Computer Systems Department (DSC)
| Head | Period |
| Edmundo Roberto Mauro Madeira | 22/08/1996 – 21/08/2000 |
| Paulo Cesar Centoducatte | 22/08/2000 – 21/08/2004 |
| Guido Costa Souza de Araujo | 22/08/2004 – 21/08/2008 |
| Nelson Luis Saldanha da Fonseca | 22/08/2008 – 21/08/2012 |
| Mario Lúcio Cortes | 22/08/2012 – 21/08/2016 |
| Edson Borin | 22/08/2016 – 21/08/2018 |
Department of Information Systems (DSI)
| Head | Period |
| Claudia Maria Bauzer Medeiros | 22/08/1996 – 21/08/1998 |
| Luiz Eduardo Buzato | 22/08/1998 – 21/08/2000 |
| Eliane Martins | 22/08/2000 – 21/08/2002 |
| Claudia Maria Bauzer Medeiros | 22/08/2002 – 21/08/2004 |
| Ariadne Maria Brito Rizzoni Carvalho | 22/08/2004 – 21/08/2008 |
| Jacques Wainer | 22/08/2008 – 21/08/2012 |
| Eliane Martins | 22/08/2012 – 21/08/2014 |
| Anderson de Rezende Rocha | 22/08/2014 – 21/08/2016 |
| Cecilia Mary Fischer Rubira | 22/08/2016 – 21/08/2018 |
Department of Computer Theory (DTC)
| Head | Period |
| Joao Carlos Setubal | 22/08/1996 – 21/08/1998 |
| Cid Carvalho de Souza | 22/08/1998 – 21/08/2000 |
| Jorge stolfi | 22/08/2000 – 21/08/2002 |
| Richard Dahab | 22/08/2002 – 21/08/2004 |
| Cid Carvalho de Souza | 22/08/2004 – 21/08/2006 |
| Richard Dahab | 22/08/2006 – 21/08/2008 |
| Orlando Lee | 22/08/2008 – 21/08/2009 |
| Zanoni Days | 22/08/2009 – 21/08/2010 |
| Richard Dahab | 22/08/2010 – 15/06/2011 |
| Guilherme Pimentel Telles | 16/06/2011 – 21/08/2011 |
| Zanoni Days | 22/08/2011 – 21/08/2014 |
| Orlando Lee | 22/08/2014 – 21/08/2018 |