mo640.bib

@UNPUBLISHED{Beginners,
  AUTHOR = {N. Castells-Brooke},
  TITLE = {Beginner's guide to molecular biology},
  NOTE = {web pages},
  HTTP = {http://www.rothamsted.ac.uk/notebook/courses/guide/}
}

@BOOK{SM97,
  AUTHOR = {J. C. Setubal and J. Meidanis},
  NOTE = {ISBN: 0-534-95262-3},
  PUBLISHER = {PWS Publishing Company},
  TITLE = {Introduction to Computational Molecular Biology},
  YEAR = {1997}
}

@ARTICLE{Pevz2004,
  AUTHOR = {P. Pevzner},
  TITLE = {Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians},
  JOURNAL = {Bioinformatics},
  YEAR = 2004,
  VOLUME = 20,
  NUMBER = 14,
  PAGES = {2159--2161},
  NOTE = {Editorial},
  PDF = {Pevzner-2004.pdf}
}

@ARTICLE{Eddy2005,
  AUTHOR = {S. R. Eddy},
  TITLE = {Antedisciplinary Science},
  JOURNAL = {PLoS Comput. Biol.},
  YEAR = 2005,
  VOLUME = 1,
  NUMBER = 1,
  PAGES = {3--4},
  NOTE = {e6},
  PDF = {Eddy-2005.pdf}
}

@ARTICLE{Dool2000,
  AUTHOR = {R. F. Doolittle},
  TITLE = {On the Trail of Protein Sequences},
  JOURNAL = {Bioinformatics},
  YEAR = 2000,
  VOLUME = 16,
  NUMBER = 1,
  PAGES = {24--33},
  PDF = {Doolittle-2000.pdf}
}

@MASTERSTHESIS{Quit2005,
  AUTHOR = {J. A. A. Quitzau},
  TITLE = {Um consenso completamente resolvido entre \'arvores filogen\'eticas completamente resolvidas},
  SCHOOL = {Institute of Computing, University of Campinas},
  YEAR = 2005,
  NOTE = {Revised 2007 version},
  PS = {Quitzau-2007.ps}
}

@BOOK{Fels2004,
  AUTHOR = {J. Felsenstein},
  TITLE = {Inferring Phylogenies},
  PUBLISHER = {Sinauer Associates, Inc.},
  YEAR = 2004,
  NOTE = {ISBN: 0-87893-177-5}
}

@ARTICLE{FKW1995,
  AUTHOR = {M. Farach and S. Kannan and T. Warnow},
  TITLE = {A Robust Model for Finding Optimal Evolutionary Trees},
  JOURNAL = {Algorithmica},
  YEAR = 1995,
  VOLUME = 13,
  PAGES = {155--179},
  NOTE = {Special Issue on Computational Biology},
  PDF = {Farach-et-al-1995.pdf}
}

@INCOLLECTION{GO2005,
  AUTHOR = {D. Gusfield and S. H. Orzack},
  TITLE = {Haplotype Inference},
  BOOKTITLE = {Handbook of Computational Molecular Biology},
  PUBLISHER = {Chapman & Hall/CRC},
  YEAR = 2005,
  EDITOR = {Srinivas Aluru},
  VOLUME = 9,
  SERIES = {Information Science Series},
  CHAPTER = 18,
  PDF = {Gusfield-Orzack-2005.pdf}
}

@ARTICLE{HM1999,
  AUTHOR = {X. Huang and A. Madan},
  TITLE = {{CAP3}: A {DNA} Sequence Assembly Program},
  JOURNAL = {Genome Research},
  YEAR = 1999,
  VOLUME = 9,
  PAGES = {868--877},
  PDF = {Huang-Madan-1999.pdf}
}

@ARTICLE{PTW2001,
  AUTHOR = {P. Pevzner and H. Tang and M. S. Waterman},
  TITLE = {An {E}ulerian Path Approach to {DNA} Fragment Assembly},
  JOURNAL = {Proc. Nat. Acad. Sci. - USA},
  YEAR = 2001,
  VOLUME = 98,
  NUMBER = 17,
  PAGES = {9748--9753},
  PDF = {Pevzner-et-al-2001.pdf}
}

@ARTICLE{SY2005,
  AUTHOR = {S. L. Salzberg and J. A. Yorke},
  TITLE = {Beware of Mis-assembled Genomes},
  JOURNAL = {Bioinformatics},
  YEAR = 2005,
  VOLUME = 21,
  NUMBER = 24,
  PAGES = {4320--4321},
  NOTE = {Letter to the Editor},
  PDF = {Salzberg-Yorke-2005.pdf}
}

@ARTICLE{ZSSY2008,
  AUTHOR = {A. V. Zimin and D. R. Smith and G. Sutton and J. A. Yorke},
  TITLE = {Assembly Reconciliation},
  JOURNAL = {Bioinformatics},
  YEAR = 2008,
  VOLUME = 24,
  NUMBER = 1,
  PAGES = {42--45},
  PDF = {Zimin-et-al-2008.pdf}
}

@ARTICLE{BP1998,
  AUTHOR = {V. Bafna and P. A. Pevzner},
  TITLE = {Sorting by Transpositions},
  JOURNAL = {{SIAM} J. Discrete Math.},
  YEAR = 1998,
  VOLUME = 11,
  NUMBER = 2,
  PAGES = {224--240},
  MONTH = {May},
  PDF = {Bafna-Pevzner-1998.pdf}
}

@UNPUBLISHED{Mnei2004,
  AUTHOR = {S. Mneimneh},
  TITLE = {Genome rearragement, sorting signed permutations by reversals},
  NOTE = {Lectures 16 and 17 from course CSE 8354 -- Computational Biology, Southern Methodist University, Dallas, USA},
  YEAR = 2004,
  HTTP = {http://engr.smu.edu/~saad/courses/cse8354/}
}

@ARTICLE{BMY2001,
  AUTHOR = {D. A. Bader and B. M. E. Moret and M. Yan},
  TITLE = {A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study},
  JOURNAL = {Journal of Computational Biology},
  YEAR = 2001,
  VOLUME = 8,
  NUMBER = 5,
  PAGES = {483--491},
  PDF = {Bader-et-al-2001.pdf}
}

@ARTICLE{YAF2005,
  AUTHOR = {S. Yancopoulos and O. Attie and R. Friedberg},
  TITLE = {Efficient sorting of genomic permutations by translocation, inversion and block interchange},
  JOURNAL = {Bioinformatics},
  YEAR = 2005,
  VOLUME = 21,
  NUMBER = 16,
  PAGES = {3340--3346},
  PDF = {Yancopoulos-et-al-2005.pdf}
}

@ARTICLE{BMS2006,
  AUTHOR = {A. Bergeron and J. Mixtacki and J. Stoye},
  TITLE = {On Sorting by Translocations},
  JOURNAL = {Journal of Computational Biology},
  YEAR = 2006,
  VOLUME = 13,
  NUMBER = 2,
  PAGES = {567--578},
  PDF = {Bergeron-et-al-2006.pdf}
}

@ARTICLE{Benz1959,
  AUTHOR = {S. Benzer},
  TITLE = {On the Topology of the Genetic Fine Structure},
  JOURNAL = {Proc. Nat. Acad. Sci. - USA},
  YEAR = 1959,
  VOLUME = 45,
  PAGES = {1607--1620},
  PDF = {Benzer-1959.pdf}
}

@ARTICLE{BL1976,
  AUTHOR = {K. S. Booth and G. S. Lueker},
  TITLE = {Testing for the Consecutive Ones Property, Interval Graphs, and Graph Planarity using {PQ}-Tree Algorithms},
  JOURNAL = {J. Comput. Systems Sci.},
  YEAR = 1976,
  VOLUME = 13,
  NUMBER = 3,
  PAGES = {335--379}
}

@ARTICLE{MPT1998,
  AUTHOR = {J. Meidanis and O. Porto and G. P. Telles},
  TITLE = {On the Consecutive Ones Property},
  JOURNAL = {Discrete Applied Mathematics},
  YEAR = 1998,
  VOLUME = 88,
  PAGES = {325--354},
  PDF = {Meidanis-Porto-Telles-1998.pdf}
}

@UNPUBLISHED{TM2007,
  AUTHOR = {G. P. Telles and J. Meidanis},
  TITLE = {Building {PQR} Trees in Almost Linear Time},
  NOTE = {Submitted for publication},
  YEAR = 2007,
  PDF = {Telles-Meidanis-2007.pdf}
}


This file has been generated by bibtex2html 1.66