MO640 - Exercises - Representation of genomes, Feijao and Meidanis 2011, Pevzner and Shamir 2004 (chapter 9), Setubal and Meidanis 1997 (chapter 7)

Exercises marked with (*) require further reading/search beyond the suggested texts.

1. (*) Determine the adjacency set of the circular human mitochondrial genome, shown below. Represent the 13 protein coding genes only.

Answer:

{ ND3_hND4L_t, ND4L_hND4_t, ND4_hND5_t, ND5_hND6_h, ND6_tCytB_t, CYTB_hND1_t, ND1_hND2_t, ND2_hCox1_t, Cox1_hCox2_t, Cox2_hAtp8_t, Atp8_hAtp6_t, Atp6_hCox3_t, Cox3_hND3_t }

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