# Last edited on 2008-06-15 06:28:18 by stolfi
# The Bacterial and Plant Plastid Code (transl_table=11)

#     AAs   =  FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
#   Starts  =  ---M---------------M------------MMMM---------------M------------
#   Base1   =  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
#   Base2   =  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
#   Base3   =  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

# DEF AS
# --- --
  AAA K- # 
  AAT N- # 
  AAC N- # 
  AAG K- # 
  ATA IM #
  ATT IM # Rarely, in Bacteria [114].
  ATC IM #
  ATG MM # Normal.
  ACA T- # 
  ACT T- # 
  ACC T- # 
  ACG T- # 
  AGA R- # 
  AGT S- # 
  AGC S- # 
  AGG R- # 
  TAA *- # 
  TAT Y- # 
  TAC Y- # 
  TAG *- # 
  TTA L- # 
  TTT F- # 
  TTC F- # 
  TTG LM # E. coli, about 3% proteins [112]
  TCA S- # 
  TCT S- # 
  TCC S- # 
  TCG S- # 
  TGA *- # Rarely Trp in Bacillus subtilis, E. coli [115]
  TGT C- # 
  TGC C- # 
  TGG W- # 
  CAA Q- # 
  CAT H- # 
  CAC H- # 
  CAG Q- # 
  CTA L- # 
  CTT L- # 
  CTC L- # 
  CTG LM # plasmid protein RepA in Escherichia coli [113]
  CCA P- # 
  CCT P- # 
  CCC P- # 
  CCG P- # 
  CGA R- # 
  CGT R- # 
  CGC R- # 
  CGG R- # 
  GAA E- # 
  GAT D- # 
  GAC D- # 
  GAG E- # 
  GTA V- # 
  GTT V- # 
  GTC V- # 
  GTG VM # Archaea and Bacteria [111]
  GCA A- # 
  GCT A- # 
  GCC A- # 
  GCG A- # 
  GGA G- # 
  GGT G- # 
  GGC G- # 
  GGG G- # 

# [111] Kozak 1983, Fotheringham et al. 1986, 
#   Golderer et al. 1995, Nolling et al. 1995,
#   Sazuka & Ohara 1996, Genser et al. 1998,
#   Wang et al. 2003
# [112] Blattner et al. 1997
# [113] Spiers and Bergquist, 1992
# [114] Polard et al. 1991, Liveris et al. 1993,
#   Sazuka & Ohara 1996, Binns & Masters 2002
# [115] Hatfiled and Diamond, 1993