# Last edited on 2008-06-10 20:38:49 by stolfi

FOUR_PROG = dnafour
SAMP_PROG = dnasample

PROGS := \
  ${FOUR_PROG} \
  ${SAMP_PROG}

PROGDIR := ..

RUNS := \
  NC_004545:00000000:0100:4096:4096 \
  NC_004545:00000000:0400:1024:1024 \
  NC_001489:00000000:0050:0128:0128 \
  NC_001489:00000000:0007:1024:1024 \
  \
  NC_002488:00000000:2500:1024:1024 \
  NC_002488:00000000:0500:1024:1024 \
  NC_002488:00500000:0500:1024:1024 \
  NC_002488:01000000:0500:1024:1024 \
  NC_002488:01500000:0500:1024:1024

.PHONY:: run-all run-single

# all: clean run-all
all: run-all

run-all: 
	for run in ${RUNS}; do make RUN=$$run run-single ; done

clean::
	-rm -f */*.smp */*.pot */*.eps

######################################################################
# Sub-make - caller must define ${RUN}

RUN := RUN.IS.UNDEFINED
ifneq "/${RUN}" "/RUN.IS.UNDEFINED"

FIELDS := ${subst :, ,${RUN}}
SNAME := ${word 1,${FIELDS}}
SKIP  := ${word 2,${FIELDS}}
NSEQS := ${word 3,${FIELDS}}
SZSEQ := ${word 4,${FIELDS}}
STEP  := ${word 5,${FIELDS}}

OUTNAME := ${SNAME}/${SKIP}-${NSEQS}-${SZSEQ}-${STEP}

run-single: ${OUTNAME}-pot.eps

DATADIR := ${STOLFIHOME}/programs/c/DNA/small/DATA

${OUTNAME}-pot.eps: ${OUTNAME}.pot plot-pot
	plot-pot ${OUTNAME} ${NSEQS} ${SZSEQ} 

${OUTNAME}.pot: ${OUTNAME}.smp ${PROGDIR}/${FOUR_PROG}
	cat ${OUTNAME}.smp \
          | ${PROGDIR}/${FOUR_PROG} ${NSEQS} ${SZSEQ} \
          > ${OUTNAME}.pot

${OUTNAME}.smp: ${DATADIR}/${SNAME}.bas ${PROGDIR}/${SAMP_PROG}
	mkdir -p ${SNAME}
	cat ${DATADIR}/${SNAME}.bas \
          | ${PROGDIR}/${SAMP_PROG} ${SKIP} ${NSEQS} ${SZSEQ} ${STEP} \
          > ${OUTNAME}.smp

endif
# end ${RUN}
######################################################################