# Last edited on 2008-06-15 06:24:30 by stolfi
# The Vertebrate Mitochondrial Code (transl_table=2)

#     AAs   =  FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG
#   Starts  =  --------------------------------MMMM---------------M------------
#   Base1   =  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
#   Base2   =  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
#   Base3   =  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

# DEF AS
# --- --
  AAA K- # 
  AAT N- # 
  AAC N- # 
  AAG K- # 
  ATA MM # Alternate: Bos,Homo,Mus
  ATT IM # Alternate: Homo,Mus
  ATC IM # Alternate: Mus
  ATG MM # Normal
  ACA T- # 
  ACT T- # 
  ACC T- # 
  ACG T- # 
  AGA *- # 
  AGT S- # 
  AGC S- # 
  AGG *- # 
  TAA *- # 
  TAT Y- # 
  TAC Y- # 
  TAG *- # 
  TTA L- # 
  TTT F- # 
  TTC F- # 
  TTG L- # 
  TCA S- # 
  TCT S- # 
  TCC S- # 
  TCG S- # 
  TGA W- # 
  TGT C- # 
  TGC C- # 
  TGG W- # 
  CAA Q- # 
  CAT H- # 
  CAC H- # 
  CAG Q- # 
  CTA L- # 
  CTT L- # 
  CTC L- # 
  CTG L- # 
  CCA P- # 
  CCT P- # 
  CCC P- # 
  CCG P- # 
  CGA R- # 
  CGT R- # 
  CGC R- # 
  CGG R- # 
  GAA E- # 
  GAT D- # 
  GAC D- # 
  GAG E- # 
  GTA V- # 
  GTT V- # 
  GTC V- # 
  GTG VM # Coturnix, Gallus (Desjardins and Morais, 1991)
  GCA A- # 
  GCT A- # 
  GCC A- # 
  GCG A- # 
  GGA G- # 
  GGT G- # 
  GGC G- # 
  GGG G- # 

# Note: the transcripts of several vertebrate mitochondrial genes end in U
# or UA, which become termination codons (UAA) upon subsequent
# polyadenylation.