I had already remarked that there were two main categories of words,
\qoljc/-\qoqjc/ and \ccc/-\cscc/. Comparing the two lists, it seems
that the latter can be split into two subclasses, with and without
a gallows \lj/ (or \cljc/) in their "suffix".
So I tabulated the three classes of words:
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_AHc.*_' '_ccc[^HP]*_' '_ccc.*[HP].*_'
201 0.20 AHccgci 387 0.46 ccccgci 90 0.29 cccHcci
191 0.19 AHcccgci 139 0.16 cccci 68 0.22 ccccHcci
116 0.11 AHcie 61 0.07 ccccci 31 0.10 cccHci
94 0.09 AHcim 60 0.07 cccccgci 26 0.08 ccccHci
87 0.09 AHccci 33 0.04 cccoe 15 0.05 cccHcccgci
79 0.08 AHci 21 0.02 cccgci 11 0.04 cccHccci
54 0.05 AHcin 17 0.02 cccor 10 0.03 cccHccgci
50 0.05 AHcir 14 0.02 ccci 5 0.02 ccccHcccgci
43 0.04 AHcci 10 0.01 cccir 5 0.02 cccPccci
19 0.02 AHccccgci 10 0.01 cccc 4 0.01 ccccHccci
12 0.01 AHcccci 9 0.01 ccccgcim 4 0.01 cccH
7 0.01 AHcieci 9 0.01 ccccgcie 3 0.01 cccHcir
5 0.00 AHcccg 8 0.01 ccccir 2 0.01 cccoHci
4 0.00 AHcor 7 0.01 cccie 2 0.01 ccccPcci
4 0.00 AHcif 7 0.01 ccccie 2 0.01 ccccHccie
4 0.00 AHccgcir 7 0.01 ccccg 2 0.01 ccccHccgci
3 0.00 AHciecgci 4 0.00 ccccoe 2 0.01 cccPccccgci
3 0.00 AHcicgci 4 0.00 ccccgcir 2 0.01 cccHcim
3 0.00 AHccg 4 0.00 ccccc 2 0.01 cccHcif
2 0.00 AHcic 3 0.00 cccif 2 0.01 cccHc
2 0.00 AHccgcie 3 0.00 cccgcir 1 0.00 ccciHccci
2 0.00 AHcccgcie 3 0.00 ccccgoe 1 0.00 cccciHci
2 0.00 AHcccccgci 2 0.00 ccccieci 1 0.00 ccccgciHcir
1 0.00 AHcoeci 1 0.00 cccoeoe 1 0.00 cccccHcci
1 0.00 AHcoe 1 0.00 cccoeo 1 0.00 cccccHccci
1 0.00 AHcirci 1 0.00 cccoecgci 1 0.00 ccccPcccgci
1 0.00 AHcircgci 1 0.00 cccoecccgci 1 0.00 ccccHco
1 0.00 AHciie 1 0.00 cccoecccci 1 0.00 ccccHcccgccci
1 0.00 AHcieoe 1 0.00 ccciror 1 0.00 cccPoe
1 0.00 AHciecgcgci 1 0.00 cccirci 1 0.00 cccPci
1 0.00 AHciecccci 1 0.00 cccieoeci 1 0.00 cccPcccgci
1 0.00 AHciec 1 0.00 cccgoe 1 0.00 cccP
1 0.00 AHcicccgci 1 0.00 cccgcin 1 0.00 cccHcor
1 0.00 AHcgci 1 0.00 cccgcif 1 0.00 cccHcie
1 0.00 AHccoe 1 0.00 cccgcie 1 0.00 cccHccie
1 0.00 AHccir 1 0.00 ccccor 1 0.00 cccHccg
1 0.00 AHccie 1 0.00 ccccieor 1 0.00 cccHcccie
1 0.00 AHccgor 1 0.00 ccccgor 1 0.00 cccHcccci
1 0.00 AHccgcim 1 0.00 ccccgcif 1 0.00 cccHccccg
1 0.00 AHccgccgci 1 0.00 ccccgciecgci ---- ---- ----
1 0.00 AHccgccccgci 1 0.00 ccccgccci 307 1.00 TOT
1 0.00 AHccccg 1 0.00 cccccoe
1 0.00 AHccccci 1 0.00 cccccim
1 0.00 AHccccHcci 1 0.00 cccccie
1 0.00 AHccc 1 0.00 cccccgcir
1 0.00 AHcc 1 0.00 cccccg
---- ---- ---- 1 0.00 cccccci
1010 1.00 TOT ---- ---- ----
846 1.00 TOT
There are only 34 words that begin with "AH" but not "AHc".
Of these, 21 are "AHoe", which may well be misreadings of "AHcie".
Among the remaining words, there seems to be four additional major
classes:
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_oHc.*_' '_cgc.*_' '_oeHc.*_' '_Hc.*_'
85 0.20 oHccgci 72 0.22 cgcim 28 0.21 Hccgci 20 0.19 oeHccgci
57 0.13 oHcccgci 51 0.16 cgcir 18 0.13 Hccccgci 19 0.18 oeHccci
41 0.09 oHcim 50 0.15 cgcie 16 0.12 Hcccgci 15 0.15 oeHcccgci
40 0.09 oHcie 36 0.11 cgci 10 0.07 Hcie 10 0.10 oeHci
36 0.08 oHcir 27 0.08 cgccccgci 10 0.07 Hcccci 7 0.07 oeHcir
35 0.08 oHccci 12 0.04 cgcin 8 0.06 Hcir 7 0.07 oeHcim
28 0.06 oHci 6 0.02 cgcif 7 0.05 Hcim 5 0.05 oeHcin
22 0.05 oHcci 6 0.02 cgcieci 5 0.04 Hccci 5 0.05 oeHcie
16 0.04 oHcin 5 0.02 cgcirci 4 0.03 Hccoe 4 0.04 oeHcci
13 0.03 oHcccci 5 0.02 cgcccgci 3 0.02 Hcoe 3 0.03 oeHcccci
10 0.02 oHccccgci 4 0.01 cgcccoe 3 0.02 Hcccoe 2 0.02 oeHccccgci
6 0.01 oHcoe 3 0.01 cgciecgci 2 0.01 Hcin 1 0.01 oeHcoe
4 0.01 oHcieor 3 0.01 cgccoe 2 0.01 Hci 1 0.01 oeHcif
4 0.01 oHcieci 3 0.01 cgcccci 2 0.01 Hcci 1 0.01 oeHcicgci
4 0.01 oHccgcir 3 0.01 cgccccci 2 0.01 Hcccg 1 0.01 oeHccg
3 0.01 oHcccg 2 0.01 cgcieo 1 0.01 Hcircie 1 0.01 oeHcccir
2 0.00 oHcieoe 2 0.01 cgciecccgci 1 0.01 Hcirci 1 0.01 oeHccccci
2 0.00 oHciecgci 2 0.01 cgcieccccgci 1 0.01 Hcif --- ---- ----
2 0.00 oHccgcie 2 0.01 cgciHccgci 1 0.01 Hcieci 103 1.00 TOT
1 0.00 oHcoeor 2 0.01 cgciHcccgci 1 0.01 Hcic
1 0.00 oHcoecgci 2 0.01 cgccor 1 0.01 HciAHci
1 0.00 oHciroeof 2 0.01 cgccgci 1 0.01 Hccgcioe
1 0.00 oHcircif 2 0.01 cgccci 1 0.01 Hccgcie
1 0.00 oHcioc 2 0.01 cgcccccgci 1 0.01 HcccoHcccgci
1 0.00 oHcieccci 1 0.00 cgcirorci 1 0.01 Hcccir
1 0.00 oHciecccgci 1 0.00 cgcirof 1 0.01 Hcccie
1 0.00 oHcieccccgci 1 0.00 cgcircccci 1 0.01 HcccgoeHcgci
1 0.00 oHcieHci 1 0.00 cgcircccccgcie 1 0.01 Hcccgcif
1 0.00 oHcicgci 1 0.00 cgciie 1 0.01 Hccccgcir
1 0.00 oHcgcie 1 0.00 cgcieoe 1 0.01 Hccccci
1 0.00 oHccor 1 0.00 cgciecirci --- ---- ----
1 0.00 oHccoe 1 0.00 cgciecircg 135 1.00 TOT
1 0.00 oHccocgci 1 0.00 cgciecir
1 0.00 oHccoHcir 1 0.00 cgciecim
1 0.00 oHccgcim 1 0.00 cgciecie
1 0.00 oHccgcif 1 0.00 cgcieHci
1 0.00 oHccgcieor 1 0.00 cgcicHcci
1 0.00 oHccgccci 1 0.00 cgciHcim
1 0.00 oHccg 1 0.00 cgciHci
1 0.00 oHcccir 1 0.00 cgciHcci
1 0.00 oHcccie 1 0.00 cgciHccci
1 0.00 oHcccgcie 1 0.00 cgccoecicg
1 0.00 oHccccic 1 0.00 cgccccoe
1 0.00 oHccccci 1 0.00 cgcccccgcie
--- ---- ---- 1 0.00 cgccccc
435 1.00 TOT 1 0.00 cgcccHcccgci
--- ---- ----
326 1.00 TOT
The rest, again, seems to contain two major classes of words:
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_oec.*_' '_ec.*_'
73 0.39 eccccgci 38 0.29 oeccccgci
20 0.11 ecccci 22 0.17 oeci
8 0.04 ecgci 19 0.15 oecccci
7 0.04 ecccgci 9 0.07 oecgci
6 0.03 eci 6 0.05 oecccgci
6 0.03 eccccci 4 0.03 oeccci
6 0.03 ecccccgci 4 0.03 oeccccci
5 0.03 eccci 3 0.02 oecin
5 0.03 eccccg 3 0.02 oecim
5 0.03 eccccHcci 3 0.02 oecccoe
3 0.02 ecie 3 0.02 oeccccg
3 0.02 eccor 2 0.02 oecie
3 0.02 ecccoe 2 0.02 oecccHcci
3 0.02 ecccHcci 2 0.02 oec
2 0.01 ecir 1 0.01 oecir
2 0.01 ecim 1 0.01 oecimci
2 0.01 ecce 1 0.01 oeccieci
2 0.01 eccccHcccgci 1 0.01 oecccor
2 0.01 ecccHci 1 0.01 oecccgcir
2 0.01 ecc 1 0.01 oeccccif
1 0.01 ecif 1 0.01 oecccccgci
1 0.01 ecgoe 1 0.01 oecccccg
1 0.01 ecgcir 1 0.01 oeccccc
1 0.01 ecgcim 1 0.01 oeccccHcci
1 0.01 ecgcieor 1 0.01 oeccHci
1 0.01 ecg --- ---- ----
1 0.01 ecco 131 1.00 TOT
1 0.01 ecccir
1 0.01 ecccgciA
1 0.01 eccccor
1 0.01 eccccir
1 0.01 eccccif
1 0.01 eccccgcirci
1 0.01 eccccgcir
1 0.01 eccccgcie
1 0.01 eccccc
1 0.01 eccccHcie
1 0.01 eccccHccci
1 0.01 eccc
1 0.01 ecccPcccgci
--- ---- ----
185 1.00 TOT
Yet some more:
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_oPc.*_' '_Pc.*_' '_cic.*_' '_ciHc.*_'
18 0.49 oPccccgci 17 0.40 Pccccgci 12 0.32 ciccccgci 12 0.23 ciHccgci
4 0.11 oPcccci 4 0.10 Pcccoe 5 0.13 cicccci 12 0.23 ciHcccgci
2 0.05 oPcir 4 0.10 Pccccgcir 4 0.11 ciccccci 10 0.19 ciHccci
2 0.05 oPci 3 0.07 Pcccgci 2 0.05 cicccccgci 4 0.08 ciHcim
2 0.05 oPcccgci 3 0.07 Pcccci 1 0.03 cicir 3 0.06 ciHcie
2 0.05 oPccccci 2 0.05 Pccor 1 0.03 cicgcircie 2 0.04 ciHcir
1 0.03 oPcieci 2 0.05 Pccoe 1 0.03 cicgcircccci 2 0.04 ciHcin
1 0.03 oPcieccccgci 1 0.02 Pcir 1 0.03 cicgcim 2 0.04 ciHcci
1 0.03 oPcie 1 0.02 PciHccgci 1 0.03 cicgci 2 0.04 ciHcccgcir
1 0.03 oPcieHcim 1 0.02 Pcgoe 1 0.03 cicccoe 1 0.02 ciHci
1 0.03 oPcccieci 1 0.02 Pcgcieccor 1 0.03 cicccciecgci 1 0.02 ciHcccoe
1 0.03 oPccccgcie 1 0.02 Pcccoecgci 1 0.03 ciccccgcir 1 0.02 ciHccccgci
1 0.03 oPccccg 1 0.02 Pccciroe 1 0.03 ciccccg 1 0.02 ciHccccci
--- ---- ---- 1 0.02 Pccccgcie 1 0.03 cicccccci --- ---- ----
37 1.00 TOT --- ---- ---- 1 0.03 ciccccc 53 1.00 TOT
42 1.00 TOT 1 0.03 ciccccHcci
1 0.03 ciccccHccci
1 0.03 cicPcim
1 0.03 cicHccci
--- ---- ----
38 1.00 TOT
Yet some more (yawn):
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_APc.*_' '_rc.*_' '_Aec.*_' '_eHc.*_'
13 0.22 rcim 8 0.20 eHccgci 9 0.24 Aecccci 11 0.55 APccccgci
10 0.17 rccccgci 7 0.17 eHcccgci 7 0.19 Aeci 2 0.10 APcccgci
6 0.10 rcie 6 0.15 eHcim 7 0.19 Aeccccgci 2 0.10 APcccci
5 0.08 rcccci 4 0.10 eHcir 3 0.08 Aecccccgci 1 0.05 APci
3 0.05 rcir 3 0.07 eHccci 2 0.05 Aecim 1 0.05 APcgci
3 0.05 rcif 2 0.05 eHcin 2 0.05 Aecie 1 0.05 APccoe
2 0.03 rci 2 0.05 eHci 2 0.05 Aeccci 1 0.05 APcccoe
2 0.03 rccccg 2 0.05 eHccccgci 1 0.03 Aecir 1 0.05 APcccgcie
2 0.03 rcccccgci 1 0.02 eHcoecgci 1 0.03 Aecin --- ---- ----
2 0.03 rcccHci 1 0.02 eHcifo 1 0.03 Aecgci 20 1.00 TOT
1 0.02 rcirci 1 0.02 eHcieor 1 0.03 Aecccoe
1 0.02 rcin 1 0.02 eHcci 1 0.03 Aecccgci
1 0.02 rcieci 1 0.02 eHccgcci --- ---- ----
1 0.02 rciecce 1 0.02 eHcccg 37 1.00 TOT
1 0.02 rcicHcci 1 0.02 eHcccci
1 0.02 rccci --- ---- ----
1 0.02 rcccgci 41 1.00 TOT
1 0.02 rcccciecg
1 0.02 rccccie
1 0.02 rccccci
1 0.02 rcccc
1 0.02 rccc
--- ---- ----
60 1.00 TOT
On casual inspection, many of these classes seem to consist of two
superimposed classes, differing by a "c/cc" switch. For instance,
the '_ccc.*[HP].*_' class seems to be the union of '_cccHc.*_' and '_ccccHc.*_'.
Let's try to identify the suffixes:
/bin/rm -f .title
/bin/rm -f .table
/bin/echo "_" > .table
set noglob
set ofmt = "0"
set npat = 1
foreach pat ( \
'cc[^H]' 'cc.*H' \
'ci[^H]' 'ci.*H' \
'cg[^H]' 'cg.*H' \
'oe[^H]' 'oe.*H' \
'Ae[^H]' 'Ae.*H' \
'e[^H]' 'e.*H' \
'r[^H]' 'r.*H' \
'AH' 'oH' \
'AP' 'oP' \
'H' 'P' \
)
/n/gnu/bin/printf " %7s" "${pat}" >> .title
/bin/cat bio-j-huc-gut.wds \
| /n/gnu/bin/sed -e 's/^/_/g' -e 's/$/_/g' \
| /n/gnu/bin/egrep "_${pat}[^H]*_" \
| /n/gnu/bin/sed -e "s/_${pat}//g" \
| /n/gnu/bin/sort | uniq -c \
| /n/gnu/bin/expand \
> .suff.frq
/n/gnu/bin/join -a 1 -a 2 -1 1 -2 2 -o"${ofmt},2.1" -e 0 .table .suff.frq > .tmp
/bin/mv .tmp .table
@ npat = ${npat} + 1
set ofmt = "${ofmt},1.${npat}"
end
unset noglob
/n/gnu/bin/printf "\n" >> .title
cat .table \
| /n/gnu/bin/gawk '/./ { s=0; for(i=2;i<=NF;i++) s+=$(i); print s, $0 }' \
| sort -nr \
> .tbsort
cat .title .tbsort \
| format-suffix-table
Here are the results:
SUFFIX TOTAL cc[^H] cc.*H ci[^H] ci.*H cg[^H] cg.*H oe[^H] oe.*H
------------ ----- ------- ------- ------- ------- ------- ------- ------- -------
TOTALORUM 4262 966 322 103 58 345 18 158 115
------------ ----- ------- ------- ------- ------- ------- ------- ------- -------
cccgci 503 0 21 14 12 27 3 38 15
ccgci 455 60 15 0 12 5 6 6 20
cgci 392 388 0 0 0 2 0 0 0
ci 353 139 68 7 2 0 2 0 13
cci 327 61 160 0 4 2 2 4 8
ccci 254 1 20 5 12 3 3 21 20
cie 187 7 4 0 3 0 0 0 5
cim 167 1 5 0 4 0 1 0 7
cir 125 8 5 1 2 0 0 0 8
ccccgci 125 1 0 4 1 3 0 5 3
im 92 0 0 0 0 72 0 3 0
oe 90 33 3 3 0 1 0 0 1
e 90 37 0 0 0 17 0 7 0
i 87 14 0 0 0 36 0 22 0
cin 81 0 0 0 2 0 0 0 5
_ 78 7 4 47 0 4 0 4 0
cccci 71 0 2 5 0 3 1 4 3
ie 70 7 0 0 0 50 0 2 0
ir 69 10 0 1 0 51 0 1 0
r 42 13 0 0 0 3 0 13 0
gci 40 21 0 1 0 0 0 9 0
m 32 30 0 0 0 0 0 0 0
or 31 17 0 2 0 0 0 0 0
ccoe 22 1 0 1 0 4 0 3 0
cccg 22 0 0 1 0 0 0 3 0
coe 19 4 1 0 0 3 0 0 1
in 17 0 0 0 0 12 0 3 0
cieci 16 2 0 0 0 0 0 1 0
c 15 11 2 0 0 0 0 0 0
if 13 3 0 0 0 6 0 0 0
cor 11 1 1 0 0 2 0 0 0
cgcim 11 11 0 0 0 0 0 0 0
cgcie 10 9 0 0 0 0 0 0 0
ccgcir 10 1 0 0 0 0 0 1 0
cccoe 10 0 0 0 1 1 0 0 0
cif 9 0 2 0 0 0 0 0 1
cg 8 7 0 0 0 0 0 0 0
ccccci 8 0 0 1 1 0 0 0 1
irci 7 1 0 0 0 5 0 0 0
ieci 7 0 0 0 0 6 0 0 0
eci 7 2 0 0 0 0 0 0 0
ccg 7 1 1 0 0 0 0 0 1
cc 7 4 0 0 0 0 0 0 0
cieor 6 1 0 0 0 0 0 0 0
ciecgci 6 0 0 1 0 0 0 0 0
cicgci 5 0 0 0 0 0 0 0 1
cgcir 5 4 0 0 0 0 0 0 0
ccie 5 1 3 0 0 0 0 0 0
ccgcie 5 0 0 0 0 0 0 0 0
cccgcie 5 0 0 0 0 0 0 0 0
ccccgcir 5 0 0 0 0 0 0 0 0
Pccci 5 5 0 0 0 0 0 0 0
oecgci 4 1 0 0 0 0 0 0 0
oecccgci 4 1 0 0 0 0 0 0 0
gcir 4 3 0 0 0 0 0 0 0
ecgci 4 3 0 0 0 0 0 0 0
cgoe 4 3 0 0 0 0 0 0 0
ccor 4 0 0 0 0 0 0 1 0
cccir 4 0 0 0 0 0 0 0 1
cccie 4 0 1 0 0 0 0 0 0
cccgcir 4 0 0 1 2 0 0 0 0
ccccg 4 0 1 0 0 0 0 1 0
cccc 4 0 0 1 0 1 0 1 0
om 3 0 0 0 0 0 0 0 1
oeccccgci 3 0 0 0 0 0 0 0 0
iecgci 3 0 0 0 0 3 0 0 0
ecccci 3 1 0 0 0 0 0 1 0
circi 3 0 0 0 0 0 0 0 0
cieoe 3 0 0 0 0 0 0 0 0
cic 3 0 0 0 0 0 0 0 0
ccccgcie 3 0 0 0 0 1 0 0 0
cccccgci 3 1 0 0 0 0 0 0 0
roe 2 0 0 0 0 0 0 1 0
rcim 2 0 0 0 0 1 0 0 0
rcie 2 1 0 0 0 0 0 0 0
oeoe 2 1 0 0 0 0 0 0 0
oeci 2 0 0 0 0 0 0 0 0
oeccci 2 0 0 0 0 0 0 0 0
oecccci 2 1 0 0 0 0 0 0 0
ieo 2 0 0 0 0 2 0 0 0
iecccgci 2 0 0 0 0 2 0 0 0
ieccccgci 2 0 0 0 0 2 0 0 0
goe 2 1 0 0 0 0 0 0 0
gcim 2 0 0 1 0 0 0 0 0
eor 2 0 0 0 0 0 0 0 0
coecgci 2 0 0 0 0 0 0 0 0
co 2 0 1 0 0 0 0 0 0
cieccccgci 2 0 0 0 0 0 0 0 0
ce 2 0 0 0 0 0 0 0 0
ccir 2 0 0 0 0 0 0 0 0
ccgcim 2 0 0 0 0 0 0 0 0
cccif 2 0 0 0 0 0 0 1 0
ccc 2 0 0 0 0 0 0 0 0
cPcci 2 2 0 0 0 0 0 0 0
cPcccgci 2 2 0 0 0 0 0 0 0
Pccccgci 2 2 0 0 0 0 0 0 0
rcin 1 0 0 0 0 0 0 0 0
oroeccccgci 1 0 0 0 0 0 0 0 0
orci 1 0 0 1 0 0 0 0 0
orccci 1 0 0 0 0 0 0 0 0
of 1 0 0 0 0 0 0 1 0
oeo 1 1 0 0 0 0 0 0 0
oecircir 1 0 0 0 0 0 0 0 0
oecim 1 0 0 0 0 0 0 0 0
oeciecccgci 1 0 0 0 0 0 0 0 0
oecgcie 1 0 0 0 0 0 0 0 0
oecgccccgci 1 0 0 0 0 0 0 0 0
oecccgcie 1 0 0 0 0 0 0 0 0
oecccg 1 0 0 0 0 0 0 0 0
oeccccg 1 0 0 0 0 0 0 0 0
oePci 1 0 0 0 0 0 0 0 0
ocgcie 1 0 0 0 0 0 0 0 0
oPci 1 0 0 0 0 0 0 0 0
no 1 1 0 0 0 0 0 0 0
irorci 1 0 0 0 0 1 0 0 0
iror 1 1 0 0 0 0 0 0 0
irof 1 0 0 0 0 1 0 0 0
ircccci 1 0 0 0 0 1 0 0 0
ircccccgcie 1 0 0 0 0 1 0 0 0
imci 1 0 0 0 0 0 0 1 0
iie 1 0 0 0 0 1 0 0 0
ieoeci 1 1 0 0 0 0 0 0 0
ieoe 1 0 0 0 0 1 0 0 0
iecirci 1 0 0 0 0 1 0 0 0
iecircg 1 0 0 0 0 1 0 0 0
iecir 1 0 0 0 0 1 0 0 0
iecim 1 0 0 0 0 1 0 0 0
iecie 1 0 0 0 0 1 0 0 0
iecce 1 0 0 0 0 0 0 0 0
gcircie 1 0 0 1 0 0 0 0 0
gcircccci 1 0 0 1 0 0 0 0 0
gcin 1 1 0 0 0 0 0 0 0
gcif 1 1 0 0 0 0 0 0 0
gcieor 1 0 0 0 0 0 0 0 0
gcie 1 1 0 0 0 0 0 0 0
g 1 0 0 0 0 0 0 0 0
eof 1 0 0 0 0 0 0 0 0
eoe 1 0 0 0 0 0 0 0 0
eo 1 1 0 0 0 0 0 0 0
eccccgci 1 0 0 0 0 1 0 0 0
eccccg 1 1 0 0 0 0 0 0 0
ecccccgci 1 0 0 0 0 1 0 0 0
ePccccgci 1 0 0 0 0 1 0 0 0
coeor 1 0 0 0 0 0 0 0 0
coecicg 1 0 0 0 0 1 0 0 0
coeci 1 0 0 0 0 0 0 0 0
ciroeof 1 0 0 0 0 0 0 0 0
ciroe 1 0 1 0 0 0 0 0 0
circif 1 0 0 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 0 0
circgci 1 0 0 0 0 0 0 0 0
cioc 1 0 0 0 0 0 0 0 0
ciie 1 0 0 0 0 0 0 0 0
cifo 1 0 0 0 0 0 0 0 0
ciecgcgci 1 0 0 0 0 0 0 0 0
cieccci 1 0 0 0 0 0 0 0 0
ciecccgci 1 0 0 0 0 0 0 0 0
ciecccci 1 0 0 0 0 0 0 0 0
ciec 1 0 0 0 0 0 0 0 0
cicccgci 1 0 0 0 0 0 0 0 0
cgor 1 1 0 0 0 0 0 0 0
cgcif 1 1 0 0 0 0 0 0 0
cgciecgci 1 1 0 0 0 0 0 0 0
cgcieccor 1 0 0 0 0 0 0 0 0
cgccci 1 1 0 0 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 0
ccocgci 1 0 0 0 0 0 0 0 0
ccim 1 1 0 0 0 0 0 0 0
ccgor 1 0 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 0 0
ccgcif 1 0 0 0 0 0 0 0 0
ccgcieor 1 0 0 0 0 0 0 0 0
ccgciA 1 0 0 0 0 0 0 0 0
ccgcci 1 0 0 0 0 0 0 0 0
ccgccgci 1 0 0 0 0 0 0 0 0
ccgccci 1 0 0 0 0 0 0 0 0
ccgccccgci 1 0 0 0 0 0 0 0 0
cccor 1 0 0 0 0 0 0 0 0
cccoecgci 1 0 0 0 0 0 0 0 0
ccciroe 1 0 0 0 0 0 0 0 0
cccieci 1 0 0 0 0 0 0 0 0
ccciecgci 1 0 0 1 0 0 0 0 0
ccciecg 1 0 0 0 0 0 0 0 0
cccgcirci 1 0 0 0 0 0 0 0 0
cccgcif 1 0 0 0 0 0 0 0 0
cccgccci 1 0 1 0 0 0 0 0 0
ccccic 1 0 0 0 0 0 0 0 0
ccccc 1 0 0 1 0 0 0 0 0
ccPcccgci 1 0 0 0 0 0 0 0 0
ccPccccci 1 1 0 0 0 0 0 0 0
Poe 1 1 0 0 0 0 0 0 0
Pcim 1 0 0 1 0 0 0 0 0
Pci 1 1 0 0 0 0 0 0 0
Pcccgci 1 1 0 0 0 0 0 0 0
P 1 1 0 0 0 0 0 0 0
SUFFIX TOTAL Ae[^H] Ae.*H e[^H] e.*H r[^H] r.*H AH oH AP oP H P
------------ ----- ------ ------ ------ ------ ------ ------ ------ ------ ------ ------ ------
TOTALORUM 4262 38 13 219 61 73 3 1043 451 23 40 150 63
------------ ----- ------ ------ ------ ------ ------ ------ ------ ------ ------ ------ ------
cccgci 503 7 2 74 9 10 0 191 57 2 2 16 3
ccgci 455 1 0 7 8 1 0 201 85 0 0 28 0
cgci 392 0 0 0 0 0 0 1 0 1 0 0 0
ci 353 0 4 0 4 0 2 79 28 1 2 2 0
cci 327 2 1 5 9 1 1 43 22 0 0 2 0
ccci 254 9 3 21 4 5 0 87 35 0 0 5 0
cie 187 0 0 0 1 0 0 116 40 0 1 10 0
cim 167 0 0 0 7 0 0 94 41 0 0 7 0
cir 125 0 0 0 4 0 0 50 36 0 2 8 1
ccccgci 125 3 0 8 2 2 0 19 10 11 18 18 17
im 92 2 0 2 0 13 0 0 0 0 0 0 0
oe 90 0 0 1 1 0 0 21 10 1 1 6 8
e 90 1 0 16 1 9 0 2 0 0 0 0 0
i 87 7 0 6 0 2 0 0 0 0 0 0 0
cin 81 0 0 0 2 0 0 54 16 0 0 2 0
_ 78 0 0 5 0 0 0 2 3 1 0 1 0
cccci 71 0 1 6 1 1 0 12 13 2 4 10 3
ie 70 2 0 3 0 6 0 0 0 0 0 0 0
ir 69 1 0 2 0 3 0 0 0 0 0 0 0
r 42 0 0 10 0 3 0 0 0 0 0 0 0
gci 40 1 0 8 0 0 0 0 0 0 0 0 0
m 32 0 0 0 0 2 0 0 0 0 0 0 0
or 31 0 0 0 0 0 0 4 2 1 1 4 0
ccoe 22 1 0 3 0 0 0 1 1 1 0 4 2
cccg 22 0 0 5 1 2 0 5 3 0 0 2 0
coe 19 0 0 0 0 0 0 1 6 0 0 3 0
in 17 1 0 0 0 1 0 0 0 0 0 0 0
cieci 16 0 0 0 0 0 0 7 4 0 1 1 0
c 15 0 0 2 0 0 0 0 0 0 0 0 0
if 13 0 0 1 0 3 0 0 0 0 0 0 0
cor 11 0 0 3 0 0 0 4 0 0 0 0 0
cgcim 11 0 0 0 0 0 0 0 0 0 0 0 0
cgcie 10 0 0 0 0 0 0 0 1 0 0 0 0
ccgcir 10 0 0 0 0 0 0 4 4 0 0 0 0
cccoe 10 0 0 0 0 0 0 0 0 1 0 3 4
cif 9 0 0 0 1 0 0 4 0 0 0 1 0
cg 8 0 0 1 0 0 0 0 0 0 0 0 0
ccccci 8 0 0 0 0 0 0 1 1 0 2 1 0
irci 7 0 0 0 0 1 0 0 0 0 0 0 0
ieci 7 0 0 0 0 1 0 0 0 0 0 0 0
eci 7 0 0 4 0 1 0 0 0 0 0 0 0
ccg 7 0 0 0 0 0 0 3 1 0 0 0 0
cc 7 0 0 1 0 1 0 1 0 0 0 0 0
cieor 6 0 0 0 1 0 0 0 4 0 0 0 0
ciecgci 6 0 0 0 0 0 0 3 2 0 0 0 0
cicgci 5 0 0 0 0 0 0 3 1 0 0 0 0
cgcir 5 0 0 1 0 0 0 0 0 0 0 0 0
ccie 5 0 0 0 0 0 0 1 0 0 0 0 0
ccgcie 5 0 0 0 0 0 0 2 2 0 0 1 0
cccgcie 5 0 0 1 0 0 0 2 1 1 0 0 0
ccccgcir 5 0 0 0 0 0 0 0 0 0 0 1 4
Pccci 5 0 0 0 0 0 0 0 0 0 0 0 0
oecgci 4 0 0 0 0 0 0 1 1 0 0 1 0
oecccgci 4 0 0 0 0 0 0 0 0 0 0 1 2
gcir 4 0 0 1 0 0 0 0 0 0 0 0 0
ecgci 4 0 0 1 0 0 0 0 0 0 0 0 0
cgoe 4 0 0 0 0 0 0 0 0 0 0 0 1
ccor 4 0 0 0 0 0 0 0 1 0 0 0 2
cccir 4 0 0 1 0 0 0 0 1 0 0 1 0
cccie 4 0 0 0 0 1 0 0 1 0 0 1 0
cccgcir 4 0 0 1 0 0 0 0 0 0 0 0 0
ccccg 4 0 0 0 0 0 0 1 0 0 1 0 0
cccc 4 0 0 1 0 0 0 0 0 0 0 0 0
om 3 0 0 0 0 0 0 1 0 0 0 0 1
oeccccgci 3 0 0 0 0 0 0 1 0 0 0 0 2
iecgci 3 0 0 0 0 0 0 0 0 0 0 0 0
ecccci 3 0 0 0 1 0 0 0 0 0 0 0 0
circi 3 0 1 0 0 0 0 1 0 0 0 1 0
cieoe 3 0 0 0 0 0 0 1 2 0 0 0 0
cic 3 0 0 0 0 0 0 2 0 0 0 1 0
ccccgcie 3 0 0 0 0 0 0 0 0 0 1 0 1
cccccgci 3 0 0 0 0 0 0 2 0 0 0 0 0
roe 2 0 0 0 0 1 0 0 0 0 0 0 0
rcim 2 0 0 1 0 0 0 0 0 0 0 0 0
rcie 2 0 0 1 0 0 0 0 0 0 0 0 0
oeoe 2 0 0 0 0 0 0 1 0 0 0 0 0
oeci 2 0 0 0 0 0 0 0 0 0 2 0 0
oeccci 2 0 0 0 0 0 0 0 0 0 0 0 2
oecccci 2 0 0 0 0 0 0 0 0 0 0 0 1
ieo 2 0 0 0 0 0 0 0 0 0 0 0 0
iecccgci 2 0 0 0 0 0 0 0 0 0 0 0 0
ieccccgci 2 0 0 0 0 0 0 0 0 0 0 0 0
goe 2 0 0 1 0 0 0 0 0 0 0 0 0
gcim 2 0 0 1 0 0 0 0 0 0 0 0 0
eor 2 0 0 1 0 0 0 0 1 0 0 0 0
coecgci 2 0 0 0 1 0 0 0 1 0 0 0 0
co 2 0 0 1 0 0 0 0 0 0 0 0 0
cieccccgci 2 0 0 0 0 0 0 0 1 0 1 0 0
ce 2 0 0 2 0 0 0 0 0 0 0 0 0
ccir 2 0 0 1 0 0 0 1 0 0 0 0 0
ccgcim 2 0 0 0 0 0 0 1 1 0 0 0 0
cccif 2 0 0 1 0 0 0 0 0 0 0 0 0
ccc 2 0 0 0 0 1 0 1 0 0 0 0 0
cPcci 2 0 0 0 0 0 0 0 0 0 0 0 0
cPcccgci 2 0 0 0 0 0 0 0 0 0 0 0 0
Pccccgci 2 0 0 0 0 0 0 0 0 0 0 0 0
rcin 1 0 0 1 0 0 0 0 0 0 0 0 0
oroeccccgci 1 0 0 0 0 0 0 0 0 0 0 1 0
orci 1 0 0 0 0 0 0 0 0 0 0 0 0
orccci 1 0 0 0 0 0 0 0 0 0 0 1 0
of 1 0 0 0 0 0 0 0 0 0 0 0 0
oeo 1 0 0 0 0 0 0 0 0 0 0 0 0
oecircir 1 0 0 0 0 0 0 0 0 0 0 0 1
oecim 1 0 0 0 0 0 0 0 0 0 0 0 1
oeciecccgci 1 0 0 0 0 0 0 0 0 0 0 0 1
oecgcie 1 0 0 0 0 0 0 0 0 0 0 1 0
oecgccccgci 1 0 0 0 0 0 0 0 0 0 0 0 1
oecccgcie 1 0 0 0 0 0 0 0 0 0 0 0 1
oecccg 1 0 0 0 0 0 0 0 0 0 0 1 0
oeccccg 1 0 0 0 0 0 0 0 0 0 0 0 1
oePci 1 0 0 0 0 0 0 0 0 0 0 1 0
ocgcie 1 0 0 0 1 0 0 0 0 0 0 0 0
oPci 1 0 0 0 0 0 0 1 0 0 0 0 0
no 1 0 0 0 0 0 0 0 0 0 0 0 0
irorci 1 0 0 0 0 0 0 0 0 0 0 0 0
iror 1 0 0 0 0 0 0 0 0 0 0 0 0
irof 1 0 0 0 0 0 0 0 0 0 0 0 0
ircccci 1 0 0 0 0 0 0 0 0 0 0 0 0
ircccccgcie 1 0 0 0 0 0 0 0 0 0 0 0 0
imci 1 0 0 0 0 0 0 0 0 0 0 0 0
iie 1 0 0 0 0 0 0 0 0 0 0 0 0
ieoeci 1 0 0 0 0 0 0 0 0 0 0 0 0
ieoe 1 0 0 0 0 0 0 0 0 0 0 0 0
iecirci 1 0 0 0 0 0 0 0 0 0 0 0 0
iecircg 1 0 0 0 0 0 0 0 0 0 0 0 0
iecir 1 0 0 0 0 0 0 0 0 0 0 0 0
iecim 1 0 0 0 0 0 0 0 0 0 0 0 0
iecie 1 0 0 0 0 0 0 0 0 0 0 0 0
iecce 1 0 0 0 0 1 0 0 0 0 0 0 0
gcircie 1 0 0 0 0 0 0 0 0 0 0 0 0
gcircccci 1 0 0 0 0 0 0 0 0 0 0 0 0
gcin 1 0 0 0 0 0 0 0 0 0 0 0 0
gcif 1 0 0 0 0 0 0 0 0 0 0 0 0
gcieor 1 0 0 1 0 0 0 0 0 0 0 0 0
gcie 1 0 0 0 0 0 0 0 0 0 0 0 0
g 1 0 0 1 0 0 0 0 0 0 0 0 0
eof 1 0 0 1 0 0 0 0 0 0 0 0 0
eoe 1 0 0 0 0 0 0 0 1 0 0 0 0
eo 1 0 0 0 0 0 0 0 0 0 0 0 0
eccccgci 1 0 0 0 0 0 0 0 0 0 0 0 0
eccccg 1 0 0 0 0 0 0 0 0 0 0 0 0
ecccccgci 1 0 0 0 0 0 0 0 0 0 0 0 0
ePccccgci 1 0 0 0 0 0 0 0 0 0 0 0 0
coeor 1 0 0 0 0 0 0 0 1 0 0 0 0
coecicg 1 0 0 0 0 0 0 0 0 0 0 0 0
coeci 1 0 0 0 0 0 0 1 0 0 0 0 0
ciroeof 1 0 0 0 0 0 0 0 1 0 0 0 0
ciroe 1 0 0 0 0 0 0 0 0 0 0 0 0
circif 1 0 0 0 0 0 0 0 1 0 0 0 0
circie 1 0 0 0 0 0 0 0 0 0 0 1 0
circgci 1 0 0 0 0 0 0 1 0 0 0 0 0
cioc 1 0 0 0 0 0 0 0 1 0 0 0 0
ciie 1 0 0 0 0 0 0 1 0 0 0 0 0
cifo 1 0 0 0 1 0 0 0 0 0 0 0 0
ciecgcgci 1 0 0 0 0 0 0 1 0 0 0 0 0
cieccci 1 0 0 0 0 0 0 0 1 0 0 0 0
ciecccgci 1 0 0 0 0 0 0 0 1 0 0 0 0
ciecccci 1 0 0 0 0 0 0 1 0 0 0 0 0
ciec 1 0 0 0 0 0 0 1 0 0 0 0 0
cicccgci 1 0 0 0 0 0 0 1 0 0 0 0 0
cgor 1 0 0 0 0 0 0 0 0 0 0 0 0
cgcif 1 0 0 0 0 0 0 0 0 0 0 0 0
cgciecgci 1 0 0 0 0 0 0 0 0 0 0 0 0
cgcieccor 1 0 0 0 0 0 0 0 0 0 0 0 1
cgccci 1 0 0 0 0 0 0 0 0 0 0 0 0
ccoeci 1 0 1 0 0 0 0 0 0 0 0 0 0
ccocgci 1 0 0 0 0 0 0 0 1 0 0 0 0
ccim 1 0 0 0 0 0 0 0 0 0 0 0 0
ccgor 1 0 0 0 0 0 0 1 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 0 0 0 0 1 0
ccgcif 1 0 0 0 0 0 0 0 1 0 0 0 0
ccgcieor 1 0 0 0 0 0 0 0 1 0 0 0 0
ccgciA 1 0 0 1 0 0 0 0 0 0 0 0 0
ccgcci 1 0 0 0 1 0 0 0 0 0 0 0 0
ccgccgci 1 0 0 0 0 0 0 1 0 0 0 0 0
ccgccci 1 0 0 0 0 0 0 0 1 0 0 0 0
ccgccccgci 1 0 0 0 0 0 0 1 0 0 0 0 0
cccor 1 0 0 1 0 0 0 0 0 0 0 0 0
cccoecgci 1 0 0 0 0 0 0 0 0 0 0 0 1
ccciroe 1 0 0 0 0 0 0 0 0 0 0 0 1
cccieci 1 0 0 0 0 0 0 0 0 0 1 0 0
ccciecgci 1 0 0 0 0 0 0 0 0 0 0 0 0
ccciecg 1 0 0 0 0 1 0 0 0 0 0 0 0
cccgcirci 1 0 0 1 0 0 0 0 0 0 0 0 0
cccgcif 1 0 0 0 0 0 0 0 0 0 0 1 0
cccgccci 1 0 0 0 0 0 0 0 0 0 0 0 0
ccccic 1 0 0 0 0 0 0 0 1 0 0 0 0
ccccc 1 0 0 0 0 0 0 0 0 0 0 0 0
ccPcccgci 1 0 0 1 0 0 0 0 0 0 0 0 0
ccPccccci 1 0 0 0 0 0 0 0 0 0 0 0 0
Poe 1 0 0 0 0 0 0 0 0 0 0 0 0
Pcim 1 0 0 0 0 0 0 0 0 0 0 0 0
Pci 1 0 0 0 0 0 0 0 0 0 0 0 0
Pcccgci 1 0 0 0 0 0 0 0 0 0 0 0 0
P 1 0 0 0 0 0 0 0 0 0 0 0 0
Beware that there is some ambiguity in the "cc[^H]" column: words like "ccccic" could be
parsed as "cc" + "ccic" or as "c" + "cccic" or as "" + "ccccic". Thus, we probably
should exclude the "cc" prefix while we decide what are the valid suffixes.
Also, the "[^H]" in some prefixes shoudl be removed, since it requires non-empty
suffixes.
Let's retry again, fixing these bugs, sorting the prefixes by importance,
and excluding also the "r" prefix:
/bin/rm -f .title
/bin/rm -f .table
/bin/echo "_" > .table
set noglob
set ofmt = "0"
set npat = 1
foreach pat ( \
'AH' 'oH' 'cg' 'cc.*H' \
'e' 'oe' 'H' 'oe.*H' \
'ci' 'P' 'e.*H' 'ci.*H' \
'oP' 'Ae' 'AP' 'cg.*H' \
'Ae.*H' \
)
/n/gnu/bin/printf " %7s" "${pat}" >> .title
/bin/cat bio-j-huc-gut.wds \
| /n/gnu/bin/sed -e 's/^/_/g' -e 's/$/_/g' \
| /n/gnu/bin/egrep "_${pat}[^H]*_" \
| /n/gnu/bin/sed -e "s/_${pat}//g" -e '/../s/_$//g' \
| /n/gnu/bin/sort | uniq -c \
| /n/gnu/bin/expand \
> .suff.frq
/n/gnu/bin/join -a 1 -a 2 -1 1 -2 2 -o"${ofmt},2.1" -e 0 .table .suff.frq > .tmp
/bin/mv .tmp .table
@ npat = ${npat} + 1
set ofmt = "${ofmt},1.${npat}"
end
unset noglob
/n/gnu/bin/printf "\n" >> .title
cat .table \
| /n/gnu/bin/gawk '/./ { s=0; for(i=2;i<=NF;i++) s+=$(i); print s, $0 }' \
| sort -nr \
> .tbsort
cat .title .tbsort \
| format-suffix-table
Here are the results:
SUFFIX TOTAL AH oH cg cc.*H e oe H oe.*H ci
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
TOTALORUM 3437 1043 451 345 322 223 289 150 115 104
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
ccgci 377 201 85 2 15 0 0 28 20 0
cccgci 352 191 57 5 21 7 6 16 15 0
ci 276 79 28 36 68 6 22 2 13 0
ccccgci 256 19 10 27 0 73 38 18 3 12
cci 251 43 22 0 160 0 0 2 8 0
cim 245 94 41 72 5 2 3 7 7 0
cie 237 116 40 50 4 3 2 10 5 0
_ 228 2 3 0 4 4 131 1 0 1
ccci 202 87 35 2 20 5 4 5 20 0
cir 172 50 36 51 5 2 1 8 8 1
cccci 108 12 13 3 2 20 19 10 3 5
cin 97 54 16 12 0 0 3 2 5 0
oe 93 21 10 17 3 16 7 6 1 0
or 38 4 2 3 0 10 13 4 0 0
ccccci 24 1 1 3 0 6 4 1 1 4
m 21 0 0 0 0 0 0 0 0 21
cgci 21 1 0 0 0 8 9 0 0 1
cccoe 21 0 0 4 0 3 3 3 0 1
e 19 2 0 4 0 0 0 0 0 12
cieci 19 7 4 6 0 0 0 1 0 0
cif 16 4 0 6 2 1 0 1 1 0
cccccgci 16 2 0 2 0 6 1 0 0 2
coe 12 1 6 0 1 0 0 3 1 0
ccoe 12 1 1 3 0 0 0 4 0 0
ccccg 12 1 0 0 1 5 3 0 0 1
cccg 11 5 3 0 0 0 0 2 0 0
r 8 0 0 0 0 1 0 0 0 7
circi 8 1 0 5 0 0 0 1 0 0
ciecgci 8 3 2 3 0 0 0 0 0 0
ccor 8 0 1 2 0 3 0 0 0 0
ccgcir 8 4 4 0 0 0 0 0 0 0
ccccgcir 7 0 0 0 0 1 0 1 0 1
oeci 6 0 0 0 0 4 0 0 0 0
ccg 6 3 1 0 1 0 0 0 1 0
Pccccgci 6 0 0 0 0 1 4 0 0 1
o 5 0 0 0 0 4 1 0 0 0
cor 5 4 0 0 1 0 0 0 0 0
cieor 5 0 4 0 0 0 0 0 0 0
cicgci 5 3 1 0 0 0 0 0 1 0
ccgcie 5 2 2 0 0 0 0 1 0 0
oecgci 4 1 1 0 0 1 0 1 0 0
oeccccgci 4 1 0 1 0 0 0 0 0 0
n 4 0 0 0 0 0 0 0 0 4
cieoe 4 1 2 1 0 0 0 0 0 0
cieccccgci 4 0 1 2 0 0 0 0 0 0
ccie 4 1 0 0 3 0 0 0 0 0
cccir 4 0 1 0 0 1 0 1 1 0
cccgcie 4 2 1 0 0 0 0 0 0 0
ccccc 4 0 0 1 0 1 1 0 0 1
c 4 0 0 0 2 0 2 0 0 0
roe 3 0 0 1 0 0 0 0 0 2
om 3 1 0 0 0 0 0 0 1 0
oecccgci 3 0 0 0 0 0 0 1 0 0
f 3 0 0 0 0 0 0 0 0 3
eci 3 0 0 0 0 0 0 0 0 3
ciecccgci 3 0 1 2 0 0 0 0 0 0
cic 3 2 0 0 0 0 0 1 0 0
cccie 3 0 1 0 1 0 0 1 0 0
cccgcir 3 0 0 0 0 0 1 0 0 0
ccccgcie 3 0 0 0 0 1 0 0 0 0
cc 3 1 0 0 0 2 0 0 0 0
rci 2 0 0 0 0 0 0 0 0 2
orcim 2 0 0 1 0 1 0 0 0 0
oeccci 2 0 0 0 0 0 0 0 0 0
oecccci 2 0 0 0 0 0 1 0 0 0
mci 2 0 0 0 0 0 0 0 0 2
eor 2 0 1 0 0 0 0 0 0 1
eoe 2 0 1 0 0 0 0 0 0 1
eccci 2 0 0 0 0 0 2 0 0 0
ecccgci 2 0 0 0 0 0 0 0 0 2
eccccgci 2 0 0 1 0 0 0 0 0 1
coecgci 2 0 1 0 0 0 0 0 0 0
ciie 2 1 0 1 0 0 0 0 0 0
cieo 2 0 0 2 0 0 0 0 0 0
cgoe 2 0 0 0 0 1 0 0 0 0
cgcim 2 0 0 0 0 1 0 0 0 1
ccgcim 2 1 1 0 0 0 0 0 0 0
cce 2 0 0 0 0 2 0 0 0 0
ccccif 2 0 0 0 0 1 1 0 0 0
ccc 2 1 0 0 0 1 0 0 0 0
ror 1 0 0 0 0 0 0 0 0 1
rcir 1 0 0 0 0 0 0 0 0 1
oroeccccgci 1 0 0 0 0 0 0 1 0 0
oroe 1 0 0 0 0 0 1 0 0 0
orcin 1 0 0 0 0 1 0 0 0 0
orcie 1 0 0 0 0 1 0 0 0 0
orccci 1 0 0 0 0 0 0 1 0 0
oeor 1 0 0 0 0 1 0 0 0 0
oeof 1 0 0 0 0 1 0 0 0 0
oeoe 1 1 0 0 0 0 0 0 0 0
oecircir 1 0 0 0 0 0 0 0 0 0
oecim 1 0 0 0 0 0 0 0 0 0
oeciecccgci 1 0 0 0 0 0 0 0 0 0
oecgcie 1 0 0 0 0 0 0 1 0 0
oecgccccgci 1 0 0 0 0 0 0 0 0 0
oecccgcie 1 0 0 0 0 0 0 0 0 0
oecccg 1 0 0 0 0 0 0 1 0 0
oeccccg 1 0 0 0 0 0 0 0 0 0
oecccccgci 1 0 0 1 0 0 0 0 0 0
oePci 1 0 0 0 0 0 0 1 0 0
oePccccgci 1 0 0 1 0 0 0 0 0 0
ocgcie 1 0 0 0 0 0 0 0 0 0
ocg 1 0 0 0 0 1 0 0 0 0
occci 1 0 0 0 0 1 0 0 0 0
occccgci 1 0 0 0 0 1 0 0 0 0
oPci 1 1 0 0 0 0 0 0 0 0
eorci 1 0 0 0 0 0 0 0 0 1
eof 1 0 0 0 0 0 1 0 0 0
eciecgci 1 0 0 0 0 0 0 0 0 1
ecgcir 1 0 0 0 0 1 0 0 0 0
ecccci 1 0 0 0 0 0 0 0 0 0
eccccc 1 0 0 0 0 0 0 0 0 1
coeor 1 0 1 0 0 0 0 0 0 0
coeci 1 1 0 0 0 0 0 0 0 0
co 1 0 0 0 1 0 0 0 0 0
cirorci 1 0 0 1 0 0 0 0 0 0
cirof 1 0 0 1 0 0 0 0 0 0
ciroeof 1 0 1 0 0 0 0 0 0 0
ciroe 1 0 0 0 1 0 0 0 0 0
circif 1 0 1 0 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 1 0 0
circgci 1 1 0 0 0 0 0 0 0 0
circccci 1 0 0 1 0 0 0 0 0 0
circccccgcie 1 0 0 1 0 0 0 0 0 0
cioc 1 0 1 0 0 0 0 0 0 0
cimci 1 0 0 0 0 0 1 0 0 0
cifo 1 0 0 0 0 0 0 0 0 0
ciecirci 1 0 0 1 0 0 0 0 0 0
ciecircg 1 0 0 1 0 0 0 0 0 0
ciecir 1 0 0 1 0 0 0 0 0 0
ciecim 1 0 0 1 0 0 0 0 0 0
ciecie 1 0 0 1 0 0 0 0 0 0
ciecgcgci 1 1 0 0 0 0 0 0 0 0
cieccci 1 0 1 0 0 0 0 0 0 0
ciecccci 1 1 0 0 0 0 0 0 0 0
ciec 1 1 0 0 0 0 0 0 0 0
cicccgci 1 1 0 0 0 0 0 0 0 0
cgcircie 1 0 0 0 0 0 0 0 0 1
cgcircccci 1 0 0 0 0 0 0 0 0 1
cgcir 1 0 0 0 0 1 0 0 0 0
cgcieor 1 0 0 0 0 1 0 0 0 0
cgcieccor 1 0 0 0 0 0 0 0 0 0
cgcie 1 0 1 0 0 0 0 0 0 0
cg 1 0 0 0 0 1 0 0 0 0
ccoecicg 1 0 0 1 0 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 0 0
ccocgci 1 0 1 0 0 0 0 0 0 0
cco 1 0 0 0 0 1 0 0 0 0
ccir 1 1 0 0 0 0 0 0 0 0
ccieci 1 0 0 0 0 0 1 0 0 0
ccgor 1 1 0 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 1 0 0
ccgcif 1 0 1 0 0 0 0 0 0 0
ccgcieor 1 0 1 0 0 0 0 0 0 0
ccgcci 1 0 0 0 0 0 0 0 0 0
ccgccgci 1 1 0 0 0 0 0 0 0 0
ccgccci 1 0 1 0 0 0 0 0 0 0
ccgccccgci 1 1 0 0 0 0 0 0 0 0
cccor 1 0 0 0 0 0 1 0 0 0
cccoecgci 1 0 0 0 0 0 0 0 0 0
ccciroe 1 0 0 0 0 0 0 0 0 0
cccieci 1 0 0 0 0 0 0 0 0 0
cccgcif 1 0 0 0 0 0 0 1 0 0
cccgciA 1 0 0 0 0 1 0 0 0 0
cccgccci 1 0 0 0 1 0 0 0 0 0
ccccor 1 0 0 0 0 1 0 0 0 0
ccccoe 1 0 0 1 0 0 0 0 0 0
ccccir 1 0 0 0 0 1 0 0 0 0
cccciecgci 1 0 0 0 0 0 0 0 0 1
ccccic 1 0 1 0 0 0 0 0 0 0
ccccgcirci 1 0 0 0 0 1 0 0 0 0
cccccgcie 1 0 0 1 0 0 0 0 0 0
cccccg 1 0 0 0 0 0 1 0 0 0
cccccci 1 0 0 0 0 0 0 0 0 1
cccPcccgci 1 0 0 0 0 1 0 0 0 0
cPcim 1 0 0 0 0 0 0 0 0 1
Poe 1 0 0 0 0 1 0 0 0 0
Pcccgci 1 0 0 0 0 1 0 0 0 0
Pcccci 1 0 0 0 0 0 0 0 0 1
A 1 0 0 0 0 0 1 0 0 0
SUFFIX TOTAL P e.*H ci.*H oP Ae AP cg.*H Ae.*H
------------ ----- ----- ----- ----- ----- ----- ----- ----- -----
TOTALORUM 3437 63 61 58 40 119 23 18 13
------------ ----- ----- ----- ----- ----- ----- ----- ----- -----
ccgci 377 0 8 12 0 0 0 6 0
cccgci 352 3 9 12 2 1 2 3 2
ci 276 0 4 2 2 7 1 2 4
ccccgci 256 17 2 1 18 7 11 0 0
cci 251 0 9 4 0 0 0 2 1
cim 245 0 7 4 0 2 0 1 0
cie 237 0 1 3 1 2 0 0 0
_ 228 0 0 0 0 81 1 0 0
ccci 202 0 4 12 0 2 0 3 3
cir 172 1 4 2 2 1 0 0 0
cccci 108 3 1 0 4 9 2 1 1
cin 97 0 2 2 0 1 0 0 0
oe 93 8 1 0 1 1 1 0 0
or 38 0 0 0 1 0 1 0 0
ccccci 24 0 0 1 2 0 0 0 0
m 21 0 0 0 0 0 0 0 0
cgci 21 0 0 0 0 1 1 0 0
cccoe 21 4 0 1 0 1 1 0 0
e 19 0 1 0 0 0 0 0 0
cieci 19 0 0 0 1 0 0 0 0
cif 16 0 1 0 0 0 0 0 0
cccccgci 16 0 0 0 0 3 0 0 0
coe 12 0 0 0 0 0 0 0 0
ccoe 12 2 0 0 0 0 1 0 0
ccccg 12 0 0 0 1 0 0 0 0
cccg 11 0 1 0 0 0 0 0 0
r 8 0 0 0 0 0 0 0 0
circi 8 0 0 0 0 0 0 0 1
ciecgci 8 0 0 0 0 0 0 0 0
ccor 8 2 0 0 0 0 0 0 0
ccgcir 8 0 0 0 0 0 0 0 0
ccccgcir 7 4 0 0 0 0 0 0 0
oeci 6 0 0 0 2 0 0 0 0
ccg 6 0 0 0 0 0 0 0 0
Pccccgci 6 0 0 0 0 0 0 0 0
o 5 0 0 0 0 0 0 0 0
cor 5 0 0 0 0 0 0 0 0
cieor 5 0 1 0 0 0 0 0 0
cicgci 5 0 0 0 0 0 0 0 0
ccgcie 5 0 0 0 0 0 0 0 0
oecgci 4 0 0 0 0 0 0 0 0
oeccccgci 4 2 0 0 0 0 0 0 0
n 4 0 0 0 0 0 0 0 0
cieoe 4 0 0 0 0 0 0 0 0
cieccccgci 4 0 0 0 1 0 0 0 0
ccie 4 0 0 0 0 0 0 0 0
cccir 4 0 0 0 0 0 0 0 0
cccgcie 4 0 0 0 0 0 1 0 0
ccccc 4 0 0 0 0 0 0 0 0
c 4 0 0 0 0 0 0 0 0
roe 3 0 0 0 0 0 0 0 0
om 3 1 0 0 0 0 0 0 0
oecccgci 3 2 0 0 0 0 0 0 0
f 3 0 0 0 0 0 0 0 0
eci 3 0 0 0 0 0 0 0 0
ciecccgci 3 0 0 0 0 0 0 0 0
cic 3 0 0 0 0 0 0 0 0
cccie 3 0 0 0 0 0 0 0 0
cccgcir 3 0 0 2 0 0 0 0 0
ccccgcie 3 1 0 0 1 0 0 0 0
cc 3 0 0 0 0 0 0 0 0
rci 2 0 0 0 0 0 0 0 0
orcim 2 0 0 0 0 0 0 0 0
oeccci 2 2 0 0 0 0 0 0 0
oecccci 2 1 0 0 0 0 0 0 0
mci 2 0 0 0 0 0 0 0 0
eor 2 0 0 0 0 0 0 0 0
eoe 2 0 0 0 0 0 0 0 0
eccci 2 0 0 0 0 0 0 0 0
ecccgci 2 0 0 0 0 0 0 0 0
eccccgci 2 0 0 0 0 0 0 0 0
coecgci 2 0 1 0 0 0 0 0 0
ciie 2 0 0 0 0 0 0 0 0
cieo 2 0 0 0 0 0 0 0 0
cgoe 2 1 0 0 0 0 0 0 0
cgcim 2 0 0 0 0 0 0 0 0
ccgcim 2 0 0 0 0 0 0 0 0
cce 2 0 0 0 0 0 0 0 0
ccccif 2 0 0 0 0 0 0 0 0
ccc 2 0 0 0 0 0 0 0 0
ror 1 0 0 0 0 0 0 0 0
rcir 1 0 0 0 0 0 0 0 0
oroeccccgci 1 0 0 0 0 0 0 0 0
oroe 1 0 0 0 0 0 0 0 0
orcin 1 0 0 0 0 0 0 0 0
orcie 1 0 0 0 0 0 0 0 0
orccci 1 0 0 0 0 0 0 0 0
oeor 1 0 0 0 0 0 0 0 0
oeof 1 0 0 0 0 0 0 0 0
oeoe 1 0 0 0 0 0 0 0 0
oecircir 1 1 0 0 0 0 0 0 0
oecim 1 1 0 0 0 0 0 0 0
oeciecccgci 1 1 0 0 0 0 0 0 0
oecgcie 1 0 0 0 0 0 0 0 0
oecgccccgci 1 1 0 0 0 0 0 0 0
oecccgcie 1 1 0 0 0 0 0 0 0
oecccg 1 0 0 0 0 0 0 0 0
oeccccg 1 1 0 0 0 0 0 0 0
oecccccgci 1 0 0 0 0 0 0 0 0
oePci 1 0 0 0 0 0 0 0 0
oePccccgci 1 0 0 0 0 0 0 0 0
ocgcie 1 0 1 0 0 0 0 0 0
ocg 1 0 0 0 0 0 0 0 0
occci 1 0 0 0 0 0 0 0 0
occccgci 1 0 0 0 0 0 0 0 0
oPci 1 0 0 0 0 0 0 0 0
eorci 1 0 0 0 0 0 0 0 0
eof 1 0 0 0 0 0 0 0 0
eciecgci 1 0 0 0 0 0 0 0 0
ecgcir 1 0 0 0 0 0 0 0 0
ecccci 1 0 1 0 0 0 0 0 0
eccccc 1 0 0 0 0 0 0 0 0
coeor 1 0 0 0 0 0 0 0 0
coeci 1 0 0 0 0 0 0 0 0
co 1 0 0 0 0 0 0 0 0
cirorci 1 0 0 0 0 0 0 0 0
cirof 1 0 0 0 0 0 0 0 0
ciroeof 1 0 0 0 0 0 0 0 0
ciroe 1 0 0 0 0 0 0 0 0
circif 1 0 0 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 0 0
circgci 1 0 0 0 0 0 0 0 0
circccci 1 0 0 0 0 0 0 0 0
circccccgcie 1 0 0 0 0 0 0 0 0
cioc 1 0 0 0 0 0 0 0 0
cimci 1 0 0 0 0 0 0 0 0
cifo 1 0 1 0 0 0 0 0 0
ciecirci 1 0 0 0 0 0 0 0 0
ciecircg 1 0 0 0 0 0 0 0 0
ciecir 1 0 0 0 0 0 0 0 0
ciecim 1 0 0 0 0 0 0 0 0
ciecie 1 0 0 0 0 0 0 0 0
ciecgcgci 1 0 0 0 0 0 0 0 0
cieccci 1 0 0 0 0 0 0 0 0
ciecccci 1 0 0 0 0 0 0 0 0
ciec 1 0 0 0 0 0 0 0 0
cicccgci 1 0 0 0 0 0 0 0 0
cgcircie 1 0 0 0 0 0 0 0 0
cgcircccci 1 0 0 0 0 0 0 0 0
cgcir 1 0 0 0 0 0 0 0 0
cgcieor 1 0 0 0 0 0 0 0 0
cgcieccor 1 1 0 0 0 0 0 0 0
cgcie 1 0 0 0 0 0 0 0 0
cg 1 0 0 0 0 0 0 0 0
ccoecicg 1 0 0 0 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 1
ccocgci 1 0 0 0 0 0 0 0 0
cco 1 0 0 0 0 0 0 0 0
ccir 1 0 0 0 0 0 0 0 0
ccieci 1 0 0 0 0 0 0 0 0
ccgor 1 0 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 0 0
ccgcif 1 0 0 0 0 0 0 0 0
ccgcieor 1 0 0 0 0 0 0 0 0
ccgcci 1 0 1 0 0 0 0 0 0
ccgccgci 1 0 0 0 0 0 0 0 0
ccgccci 1 0 0 0 0 0 0 0 0
ccgccccgci 1 0 0 0 0 0 0 0 0
cccor 1 0 0 0 0 0 0 0 0
cccoecgci 1 1 0 0 0 0 0 0 0
ccciroe 1 1 0 0 0 0 0 0 0
cccieci 1 0 0 0 1 0 0 0 0
cccgcif 1 0 0 0 0 0 0 0 0
cccgciA 1 0 0 0 0 0 0 0 0
cccgccci 1 0 0 0 0 0 0 0 0
ccccor 1 0 0 0 0 0 0 0 0
ccccoe 1 0 0 0 0 0 0 0 0
ccccir 1 0 0 0 0 0 0 0 0
cccciecgci 1 0 0 0 0 0 0 0 0
ccccic 1 0 0 0 0 0 0 0 0
ccccgcirci 1 0 0 0 0 0 0 0 0
cccccgcie 1 0 0 0 0 0 0 0 0
cccccg 1 0 0 0 0 0 0 0 0
cccccci 1 0 0 0 0 0 0 0 0
cccPcccgci 1 0 0 0 0 0 0 0 0
cPcim 1 0 0 0 0 0 0 0 0
Poe 1 0 0 0 0 0 0 0 0
Pcccgci 1 0 0 0 0 0 0 0 0
Pcccci 1 0 0 0 0 0 0 0 0
A 1 0 0 0 0 0 0 0 0
Analysis:
The prefixes "e", "oe", "ci" (without "H") do not appear
to be equivalent to the other prefixes above. However,
"ec", "oec", and "cic" do appear to fit in.
The empty string does not appear to be a valid suffix (yeay!)
Let's redo again:
/bin/rm -f .title
/bin/rm -f .table
/bin/touch .table
set noglob
set ofmt = "0"
set npat = 1
foreach pat ( \
'AH' 'oH' 'cg' 'cc.*H' \
'ec' 'oec' 'H' 'oe.*H' \
'cic' 'P' 'e.*H' 'ci.*H' \
'oP' 'Ae' 'AP' 'cg.*H' \
'Ae.*H' \
)
/n/gnu/bin/printf " %7s" "${pat}" >> .title
/bin/cat bio-j-huc-gut.wds \
| /n/gnu/bin/sed -e 's/^/_/g' -e 's/$/_/g' \
| /n/gnu/bin/egrep "_${pat}[^H][^H]*_" \
| /n/gnu/bin/sed -e "s/_${pat}//g" -e '/../s/_$//g' \
| /n/gnu/bin/sort | uniq -c \
| /n/gnu/bin/expand \
> .suff.frq
/n/gnu/bin/join -a 1 -a 2 -1 1 -2 2 -o"${ofmt},2.1" -e 0 .table .suff.frq > .tmp
/bin/mv .tmp .table
@ npat = ${npat} + 1
set ofmt = "${ofmt},1.${npat}"
end
unset noglob
/n/gnu/bin/printf "\n" >> .title
cat .table \
| /n/gnu/bin/gawk '/./ { s=0; for(i=2;i<=NF;i++) s+=$(i); print s, $0 }' \
| sort -nr \
> .tbsort
cat .title .tbsort \
| format-suffix-table
SUFFIX TOTAL AH oH cg cc.*H ec oec H oe.*H
------------ ----- ----- ----- ----- ----- ----- ----- ----- -----
TOTALORUM 3060 1041 448 345 318 171 125 149 115
------------ ----- ----- ----- ----- ----- ----- ----- ----- -----
cccgci 462 191 57 5 21 73 38 16 15
ccgci 390 201 85 2 15 7 6 28 20
cci 260 43 22 0 160 5 4 2 8
ci 248 79 28 36 68 0 0 2 13
cim 240 94 41 72 5 0 0 7 7
ccci 237 87 35 2 20 20 19 5 20
cie 232 116 40 50 4 0 0 10 5
cir 168 50 36 51 5 0 0 8 8
ccccgci 142 19 10 27 0 6 1 18 3
cin 94 54 16 12 0 0 0 2 5
cccci 78 12 13 3 2 6 4 10 3
oe 70 21 10 17 3 0 0 6 1
i 28 0 0 0 0 6 22 0 0
cieci 20 7 4 6 0 0 1 1 0
cccg 20 5 3 0 0 5 3 2 0
ccoe 19 1 1 3 0 3 3 4 0
gci 18 0 0 0 0 8 9 0 0
or 15 4 2 3 0 0 0 4 0
cif 15 4 0 6 2 0 0 1 1
cccoe 14 0 0 4 0 0 0 3 0
coe 12 1 6 0 1 0 0 3 1
ccccci 11 1 1 3 0 0 0 1 1
ccgcir 9 4 4 0 0 0 1 0 0
cor 8 4 0 0 1 3 0 0 0
circi 8 1 0 5 0 0 0 1 0
ciecgci 8 3 2 3 0 0 0 0 0
e 7 2 0 4 0 0 0 0 0
cccccgci 7 2 0 2 0 0 0 0 0
ccor 6 0 1 2 0 0 1 0 0
ccg 6 3 1 0 1 0 0 0 1
im 5 0 0 0 0 2 3 0 0
ie 5 0 0 0 0 3 2 0 0
cieor 5 0 4 0 0 0 0 0 0
cicgci 5 3 1 0 0 0 0 0 1
ccgcie 5 2 2 0 0 0 0 1 0
cccgcie 5 2 1 0 0 1 0 0 0
ccccgcir 5 0 0 0 0 0 0 1 0
oeccccgci 4 1 0 1 0 0 0 0 0
ir 4 0 0 0 0 2 1 0 0
cieoe 4 1 2 1 0 0 0 0 0
cieccccgci 4 0 1 2 0 0 0 0 0
ccie 4 1 0 0 3 0 0 0 0
cccir 4 0 1 0 0 1 0 1 1
cccgcir 4 0 0 0 0 1 0 0 0
ccccg 4 1 0 0 1 0 1 0 0
c 4 0 0 0 2 2 0 0 0
om 3 1 0 0 0 0 0 0 1
oecgci 3 1 1 0 0 0 0 1 0
oecccgci 3 0 0 0 0 0 0 1 0
in 3 0 0 0 0 0 3 0 0
ciecccgci 3 0 1 2 0 0 0 0 0
cic 3 2 0 0 0 0 0 1 0
cgci 3 1 0 0 0 0 0 0 0
cccie 3 0 1 0 1 0 0 1 0
cccc 3 0 0 0 0 1 1 0 0
oeci 2 0 0 0 0 0 0 0 0
oeccci 2 0 0 0 0 0 0 0 0
gcim 2 0 0 0 0 1 0 0 0
coecgci 2 0 1 0 0 0 0 0 0
co 2 0 0 0 1 1 0 0 0
ciie 2 1 0 1 0 0 0 0 0
cieo 2 0 0 2 0 0 0 0 0
ce 2 0 0 0 0 2 0 0 0
ccir 2 1 0 0 0 1 0 0 0
ccgcim 2 1 1 0 0 0 0 0 0
cccif 2 0 0 0 0 1 1 0 0
ccccgcie 2 0 0 0 0 0 0 0 0
cc 2 1 0 0 0 1 0 0 0
roe 1 0 0 1 0 0 0 0 0
oroeccccgci 1 0 0 0 0 0 0 1 0
orcim 1 0 0 1 0 0 0 0 0
orccci 1 0 0 0 0 0 0 1 0
oeoe 1 1 0 0 0 0 0 0 0
oecircir 1 0 0 0 0 0 0 0 0
oecim 1 0 0 0 0 0 0 0 0
oeciecccgci 1 0 0 0 0 0 0 0 0
oecgcie 1 0 0 0 0 0 0 1 0
oecgccccgci 1 0 0 0 0 0 0 0 0
oecccgcie 1 0 0 0 0 0 0 0 0
oecccg 1 0 0 0 0 0 0 1 0
oecccci 1 0 0 0 0 0 0 0 0
oeccccg 1 0 0 0 0 0 0 0 0
oecccccgci 1 0 0 1 0 0 0 0 0
oePci 1 0 0 0 0 0 0 1 0
oePccccgci 1 0 0 1 0 0 0 0 0
ocgcie 1 0 0 0 0 0 0 0 0
oPci 1 1 0 0 0 0 0 0 0
imci 1 0 0 0 0 0 1 0 0
if 1 0 0 0 0 1 0 0 0
goe 1 0 0 0 0 1 0 0 0
gcircie 1 0 0 0 0 0 0 0 0
gcircccci 1 0 0 0 0 0 0 0 0
gcir 1 0 0 0 0 1 0 0 0
gcieor 1 0 0 0 0 1 0 0 0
g 1 0 0 0 0 1 0 0 0
eor 1 0 1 0 0 0 0 0 0
eoe 1 0 1 0 0 0 0 0 0
ecccci 1 0 0 0 0 0 0 0 0
eccccgci 1 0 0 1 0 0 0 0 0
coeor 1 0 1 0 0 0 0 0 0
coeci 1 1 0 0 0 0 0 0 0
cirorci 1 0 0 1 0 0 0 0 0
cirof 1 0 0 1 0 0 0 0 0
ciroeof 1 0 1 0 0 0 0 0 0
ciroe 1 0 0 0 1 0 0 0 0
circif 1 0 1 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 1 0
circgci 1 1 0 0 0 0 0 0 0
circccci 1 0 0 1 0 0 0 0 0
circccccgcie 1 0 0 1 0 0 0 0 0
cioc 1 0 1 0 0 0 0 0 0
cifo 1 0 0 0 0 0 0 0 0
ciecirci 1 0 0 1 0 0 0 0 0
ciecircg 1 0 0 1 0 0 0 0 0
ciecir 1 0 0 1 0 0 0 0 0
ciecim 1 0 0 1 0 0 0 0 0
ciecie 1 0 0 1 0 0 0 0 0
ciecgcgci 1 1 0 0 0 0 0 0 0
cieccci 1 0 1 0 0 0 0 0 0
ciecccci 1 1 0 0 0 0 0 0 0
ciec 1 1 0 0 0 0 0 0 0
cicccgci 1 1 0 0 0 0 0 0 0
cgoe 1 0 0 0 0 0 0 0 0
cgcieccor 1 0 0 0 0 0 0 0 0
cgcie 1 0 1 0 0 0 0 0 0
ccoecicg 1 0 0 1 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 0
ccocgci 1 0 1 0 0 0 0 0 0
ccgor 1 1 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 1 0
ccgcif 1 0 1 0 0 0 0 0 0
ccgcieor 1 0 1 0 0 0 0 0 0
ccgciA 1 0 0 0 0 1 0 0 0
ccgcci 1 0 0 0 0 0 0 0 0
ccgccgci 1 1 0 0 0 0 0 0 0
ccgccci 1 0 1 0 0 0 0 0 0
ccgccccgci 1 1 0 0 0 0 0 0 0
cccor 1 0 0 0 0 1 0 0 0
cccoecgci 1 0 0 0 0 0 0 0 0
ccciroe 1 0 0 0 0 0 0 0 0
cccieci 1 0 0 0 0 0 0 0 0
ccciecgci 1 0 0 0 0 0 0 0 0
cccgcirci 1 0 0 0 0 1 0 0 0
cccgcif 1 0 0 0 0 0 0 1 0
cccgccci 1 0 0 0 1 0 0 0 0
ccccoe 1 0 0 1 0 0 0 0 0
ccccic 1 0 1 0 0 0 0 0 0
cccccgcie 1 0 0 1 0 0 0 0 0
ccccc 1 0 0 1 0 0 0 0 0
ccc 1 1 0 0 0 0 0 0 0
ccPcccgci 1 0 0 0 0 1 0 0 0
Pcim 1 0 0 0 0 0 0 0 0
SUFFIX TOTAL cic P e.*H ci.*H oP Ae AP cg.*H Ae.*H
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
TOTALORUM 3060 35 63 61 58 40 38 22 18 13
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
cccgci 462 12 3 9 12 2 1 2 3 2
ccgci 390 0 0 8 12 0 0 0 6 0
cci 260 0 0 9 4 0 0 0 2 1
ci 248 0 0 4 2 2 7 1 2 4
cim 240 0 0 7 4 0 2 0 1 0
ccci 237 5 0 4 12 0 2 0 3 3
cie 232 0 0 1 3 1 2 0 0 0
cir 168 0 1 4 2 2 1 0 0 0
ccccgci 142 2 17 2 1 18 7 11 0 0
cin 94 0 0 2 2 0 1 0 0 0
cccci 78 4 3 1 0 4 9 2 1 1
oe 70 0 8 1 0 1 1 1 0 0
i 28 0 0 0 0 0 0 0 0 0
cieci 20 0 0 0 0 1 0 0 0 0
cccg 20 1 0 1 0 0 0 0 0 0
ccoe 19 1 2 0 0 0 0 1 0 0
gci 18 1 0 0 0 0 0 0 0 0
or 15 0 0 0 0 1 0 1 0 0
cif 15 0 0 1 0 0 0 0 0 0
cccoe 14 0 4 0 1 0 1 1 0 0
coe 12 0 0 0 0 0 0 0 0 0
ccccci 11 1 0 0 1 2 0 0 0 0
ccgcir 9 0 0 0 0 0 0 0 0 0
cor 8 0 0 0 0 0 0 0 0 0
circi 8 0 0 0 0 0 0 0 0 1
ciecgci 8 0 0 0 0 0 0 0 0 0
e 7 0 0 1 0 0 0 0 0 0
cccccgci 7 0 0 0 0 0 3 0 0 0
ccor 6 0 2 0 0 0 0 0 0 0
ccg 6 0 0 0 0 0 0 0 0 0
im 5 0 0 0 0 0 0 0 0 0
ie 5 0 0 0 0 0 0 0 0 0
cieor 5 0 0 1 0 0 0 0 0 0
cicgci 5 0 0 0 0 0 0 0 0 0
ccgcie 5 0 0 0 0 0 0 0 0 0
cccgcie 5 0 0 0 0 0 0 1 0 0
ccccgcir 5 0 4 0 0 0 0 0 0 0
oeccccgci 4 0 2 0 0 0 0 0 0 0
ir 4 1 0 0 0 0 0 0 0 0
cieoe 4 0 0 0 0 0 0 0 0 0
cieccccgci 4 0 0 0 0 1 0 0 0 0
ccie 4 0 0 0 0 0 0 0 0 0
cccir 4 0 0 0 0 0 0 0 0 0
cccgcir 4 1 0 0 2 0 0 0 0 0
ccccg 4 0 0 0 0 1 0 0 0 0
c 4 0 0 0 0 0 0 0 0 0
om 3 0 1 0 0 0 0 0 0 0
oecgci 3 0 0 0 0 0 0 0 0 0
oecccgci 3 0 2 0 0 0 0 0 0 0
in 3 0 0 0 0 0 0 0 0 0
ciecccgci 3 0 0 0 0 0 0 0 0 0
cic 3 0 0 0 0 0 0 0 0 0
cgci 3 0 0 0 0 0 1 1 0 0
cccie 3 0 0 0 0 0 0 0 0 0
cccc 3 1 0 0 0 0 0 0 0 0
oeci 2 0 0 0 0 2 0 0 0 0
oeccci 2 0 2 0 0 0 0 0 0 0
gcim 2 1 0 0 0 0 0 0 0 0
coecgci 2 0 0 1 0 0 0 0 0 0
co 2 0 0 0 0 0 0 0 0 0
ciie 2 0 0 0 0 0 0 0 0 0
cieo 2 0 0 0 0 0 0 0 0 0
ce 2 0 0 0 0 0 0 0 0 0
ccir 2 0 0 0 0 0 0 0 0 0
ccgcim 2 0 0 0 0 0 0 0 0 0
cccif 2 0 0 0 0 0 0 0 0 0
ccccgcie 2 0 1 0 0 1 0 0 0 0
cc 2 0 0 0 0 0 0 0 0 0
roe 1 0 0 0 0 0 0 0 0 0
oroeccccgci 1 0 0 0 0 0 0 0 0 0
orcim 1 0 0 0 0 0 0 0 0 0
orccci 1 0 0 0 0 0 0 0 0 0
oeoe 1 0 0 0 0 0 0 0 0 0
oecircir 1 0 1 0 0 0 0 0 0 0
oecim 1 0 1 0 0 0 0 0 0 0
oeciecccgci 1 0 1 0 0 0 0 0 0 0
oecgcie 1 0 0 0 0 0 0 0 0 0
oecgccccgci 1 0 1 0 0 0 0 0 0 0
oecccgcie 1 0 1 0 0 0 0 0 0 0
oecccg 1 0 0 0 0 0 0 0 0 0
oecccci 1 0 1 0 0 0 0 0 0 0
oeccccg 1 0 1 0 0 0 0 0 0 0
oecccccgci 1 0 0 0 0 0 0 0 0 0
oePci 1 0 0 0 0 0 0 0 0 0
oePccccgci 1 0 0 0 0 0 0 0 0 0
ocgcie 1 0 0 1 0 0 0 0 0 0
oPci 1 0 0 0 0 0 0 0 0 0
imci 1 0 0 0 0 0 0 0 0 0
if 1 0 0 0 0 0 0 0 0 0
goe 1 0 0 0 0 0 0 0 0 0
gcircie 1 1 0 0 0 0 0 0 0 0
gcircccci 1 1 0 0 0 0 0 0 0 0
gcir 1 0 0 0 0 0 0 0 0 0
gcieor 1 0 0 0 0 0 0 0 0 0
g 1 0 0 0 0 0 0 0 0 0
eor 1 0 0 0 0 0 0 0 0 0
eoe 1 0 0 0 0 0 0 0 0 0
ecccci 1 0 0 1 0 0 0 0 0 0
eccccgci 1 0 0 0 0 0 0 0 0 0
coeor 1 0 0 0 0 0 0 0 0 0
coeci 1 0 0 0 0 0 0 0 0 0
cirorci 1 0 0 0 0 0 0 0 0 0
cirof 1 0 0 0 0 0 0 0 0 0
ciroeof 1 0 0 0 0 0 0 0 0 0
ciroe 1 0 0 0 0 0 0 0 0 0
circif 1 0 0 0 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 0 0 0
circgci 1 0 0 0 0 0 0 0 0 0
circccci 1 0 0 0 0 0 0 0 0 0
circccccgcie 1 0 0 0 0 0 0 0 0 0
cioc 1 0 0 0 0 0 0 0 0 0
cifo 1 0 0 1 0 0 0 0 0 0
ciecirci 1 0 0 0 0 0 0 0 0 0
ciecircg 1 0 0 0 0 0 0 0 0 0
ciecir 1 0 0 0 0 0 0 0 0 0
ciecim 1 0 0 0 0 0 0 0 0 0
ciecie 1 0 0 0 0 0 0 0 0 0
ciecgcgci 1 0 0 0 0 0 0 0 0 0
cieccci 1 0 0 0 0 0 0 0 0 0
ciecccci 1 0 0 0 0 0 0 0 0 0
ciec 1 0 0 0 0 0 0 0 0 0
cicccgci 1 0 0 0 0 0 0 0 0 0
cgoe 1 0 1 0 0 0 0 0 0 0
cgcieccor 1 0 1 0 0 0 0 0 0 0
cgcie 1 0 0 0 0 0 0 0 0 0
ccoecicg 1 0 0 0 0 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 0 1
ccocgci 1 0 0 0 0 0 0 0 0 0
ccgor 1 0 0 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 0 0 0
ccgcif 1 0 0 0 0 0 0 0 0 0
ccgcieor 1 0 0 0 0 0 0 0 0 0
ccgciA 1 0 0 0 0 0 0 0 0 0
ccgcci 1 0 0 1 0 0 0 0 0 0
ccgccgci 1 0 0 0 0 0 0 0 0 0
ccgccci 1 0 0 0 0 0 0 0 0 0
ccgccccgci 1 0 0 0 0 0 0 0 0 0
cccor 1 0 0 0 0 0 0 0 0 0
cccoecgci 1 0 1 0 0 0 0 0 0 0
ccciroe 1 0 1 0 0 0 0 0 0 0
cccieci 1 0 0 0 0 1 0 0 0 0
ccciecgci 1 1 0 0 0 0 0 0 0 0
cccgcirci 1 0 0 0 0 0 0 0 0 0
cccgcif 1 0 0 0 0 0 0 0 0 0
cccgccci 1 0 0 0 0 0 0 0 0 0
ccccoe 1 0 0 0 0 0 0 0 0 0
ccccic 1 0 0 0 0 0 0 0 0 0
cccccgcie 1 0 0 0 0 0 0 0 0 0
ccccc 1 0 0 0 0 0 0 0 0 0
ccc 1 0 0 0 0 0 0 0 0 0
ccPcccgci 1 0 0 0 0 0 0 0 0 0
Pcim 1 1 0 0 0 0 0 0 0 0
Analysis:
The prefix "cg" seems a bit anomalous. It looks as if the "cg"
were actually the first "c" of the suffix.
Most valid suffixes apparently begin with "c". Thus
we should incorporate the "c" into the prefix.
The "i" suffix is bogus; it entered only because of "eci" and
"oeci". Note that "ec", "cic" and "oec" incorporate the "c" while
the other prefixes don't.
The prefixes "cc.*H", "oe.*H", etc. seem anomalous, probably
because some "H"s are actually "cHc"s. We should find out what are
the actual prefixes, and see if we can take the two classes apart.
Most productive suffixes come in pairs that differ by an extra "c"
at the beginning.
Redoing again with the extra "c"s:
/bin/rm -f .title
/bin/rm -f .table
/bin/touch .table
set noglob
set ofmt = "0"
set npat = 1
foreach pat ( \
'AH' 'oH' 'cg' 'cc.*H' \
'e' 'oe' 'H' 'Ae' \
'oe.*H' 'ci' 'P' 'e.*H' \
'ci.*H' 'oP' 'AP' 'cg.*H' \
'Ae.*H' \
)
/n/gnu/bin/printf " %7s" "${pat}" >> .title
/bin/cat bio-j-huc-gut.wds \
| /n/gnu/bin/sed -e 's/^/_/g' -e 's/$/_/g' \
| /n/gnu/bin/egrep "_${pat}c[^HPA]*_" \
| /n/gnu/bin/sed -e "s/_${pat}//g" -e '/../s/_$//g' \
| /n/gnu/bin/sort | uniq -c \
| /n/gnu/bin/expand \
> .suff.frq
/n/gnu/bin/join -a 1 -a 2 -1 1 -2 2 -o"${ofmt},2.1" -e 0 .table .suff.frq > .tmp
/bin/mv .tmp .table
@ npat = ${npat} + 1
set ofmt = "${ofmt},1.${npat}"
end
unset noglob
/n/gnu/bin/printf "\n" >> .title
cat .table \
| /n/gnu/bin/gawk '/./ { s=0; for(i=2;i<=NF;i++) s+=$(i); print s, $0 }' \
| sort -nr \
> .tbsort
cat .title .tbsort \
| format-suffix-table
Results:
SUFFIX TOTAL AH oH cg cc.*H e oe H oe.*H
------------ ----- ----- ----- ----- ----- ----- ----- ----- -----
TOTALORUM 2927 1009 433 315 315 169 127 132 113
------------ ----- ----- ----- ----- ----- ----- ----- ----- -----
ccgci 377 201 85 2 15 0 0 28 20
cccgci 352 191 57 5 21 7 6 16 15
ci 276 79 28 36 68 6 22 2 13
ccccgci 256 19 10 27 0 73 38 18 3
cci 251 43 22 0 160 0 0 2 8
cim 245 94 41 72 5 2 3 7 7
cie 237 116 40 50 4 3 2 10 5
ccci 202 87 35 2 20 5 4 5 20
cir 172 50 36 51 5 2 1 8 8
cccci 108 12 13 3 2 20 19 10 3
cin 97 54 16 12 0 0 3 2 5
ccccci 24 1 1 3 0 6 4 1 1
cgci 21 1 0 0 0 8 9 0 0
cccoe 21 0 0 4 0 3 3 3 0
cieci 19 7 4 6 0 0 0 1 0
cif 16 4 0 6 2 1 0 1 1
cccccgci 16 2 0 2 0 6 1 0 0
coe 12 1 6 0 1 0 0 3 1
ccoe 12 1 1 3 0 0 0 4 0
ccccg 12 1 0 0 1 5 3 0 0
cccg 11 5 3 0 0 0 0 2 0
circi 8 1 0 5 0 0 0 1 0
ciecgci 8 3 2 3 0 0 0 0 0
ccor 8 0 1 2 0 3 0 0 0
ccgcir 8 4 4 0 0 0 0 0 0
ccccgcir 7 0 0 0 0 1 0 1 0
ccg 6 3 1 0 1 0 0 0 1
cor 5 4 0 0 1 0 0 0 0
cieor 5 0 4 0 0 0 0 0 0
cicgci 5 3 1 0 0 0 0 0 1
ccgcie 5 2 2 0 0 0 0 1 0
cieoe 4 1 2 1 0 0 0 0 0
cieccccgci 4 0 1 2 0 0 0 0 0
ccie 4 1 0 0 3 0 0 0 0
cccir 4 0 1 0 0 1 0 1 1
cccgcie 4 2 1 0 0 0 0 0 0
ccccc 4 0 0 1 0 1 1 0 0
c 4 0 0 0 2 0 2 0 0
ciecccgci 3 0 1 2 0 0 0 0 0
cic 3 2 0 0 0 0 0 1 0
cccie 3 0 1 0 1 0 0 1 0
cccgcir 3 0 0 0 0 0 1 0 0
ccccgcie 3 0 0 0 0 1 0 0 0
cc 3 1 0 0 0 2 0 0 0
coecgci 2 0 1 0 0 0 0 0 0
ciie 2 1 0 1 0 0 0 0 0
cieo 2 0 0 2 0 0 0 0 0
cgoe 2 0 0 0 0 1 0 0 0
cgcim 2 0 0 0 0 1 0 0 0
ccgcim 2 1 1 0 0 0 0 0 0
cce 2 0 0 0 0 2 0 0 0
ccccif 2 0 0 0 0 1 1 0 0
ccc 2 1 0 0 0 1 0 0 0
coeor 1 0 1 0 0 0 0 0 0
coeci 1 1 0 0 0 0 0 0 0
co 1 0 0 0 1 0 0 0 0
cirorci 1 0 0 1 0 0 0 0 0
cirof 1 0 0 1 0 0 0 0 0
ciroeof 1 0 1 0 0 0 0 0 0
ciroe 1 0 0 0 1 0 0 0 0
circif 1 0 1 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 1 0
circgci 1 1 0 0 0 0 0 0 0
circccci 1 0 0 1 0 0 0 0 0
circccccgcie 1 0 0 1 0 0 0 0 0
cioc 1 0 1 0 0 0 0 0 0
cimci 1 0 0 0 0 0 1 0 0
cifo 1 0 0 0 0 0 0 0 0
ciecirci 1 0 0 1 0 0 0 0 0
ciecircg 1 0 0 1 0 0 0 0 0
ciecir 1 0 0 1 0 0 0 0 0
ciecim 1 0 0 1 0 0 0 0 0
ciecie 1 0 0 1 0 0 0 0 0
ciecgcgci 1 1 0 0 0 0 0 0 0
cieccci 1 0 1 0 0 0 0 0 0
ciecccci 1 1 0 0 0 0 0 0 0
ciec 1 1 0 0 0 0 0 0 0
cicccgci 1 1 0 0 0 0 0 0 0
cgcircie 1 0 0 0 0 0 0 0 0
cgcircccci 1 0 0 0 0 0 0 0 0
cgcir 1 0 0 0 0 1 0 0 0
cgcieor 1 0 0 0 0 1 0 0 0
cgcieccor 1 0 0 0 0 0 0 0 0
cgcie 1 0 1 0 0 0 0 0 0
cg 1 0 0 0 0 1 0 0 0
ccoecicg 1 0 0 1 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 0
ccocgci 1 0 1 0 0 0 0 0 0
cco 1 0 0 0 0 1 0 0 0
ccir 1 1 0 0 0 0 0 0 0
ccieci 1 0 0 0 0 0 1 0 0
ccgor 1 1 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 1 0
ccgcif 1 0 1 0 0 0 0 0 0
ccgcieor 1 0 1 0 0 0 0 0 0
ccgcci 1 0 0 0 0 0 0 0 0
ccgccgci 1 1 0 0 0 0 0 0 0
ccgccci 1 0 1 0 0 0 0 0 0
ccgccccgci 1 1 0 0 0 0 0 0 0
cccor 1 0 0 0 0 0 1 0 0
cccoecgci 1 0 0 0 0 0 0 0 0
ccciroe 1 0 0 0 0 0 0 0 0
cccieci 1 0 0 0 0 0 0 0 0
cccgcif 1 0 0 0 0 0 0 1 0
cccgccci 1 0 0 0 1 0 0 0 0
ccccor 1 0 0 0 0 1 0 0 0
ccccoe 1 0 0 1 0 0 0 0 0
ccccir 1 0 0 0 0 1 0 0 0
cccciecgci 1 0 0 0 0 0 0 0 0
ccccic 1 0 1 0 0 0 0 0 0
ccccgcirci 1 0 0 0 0 1 0 0 0
cccccgcie 1 0 0 1 0 0 0 0 0
cccccg 1 0 0 0 0 0 1 0 0
cccccci 1 0 0 0 0 0 0 0 0
SUFFIX TOTAL Ae ci P e.*H ci.*H oP AP cg.*H Ae.*H
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
TOTALORUM 2927 37 34 41 57 58 36 20 18 13
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
ccgci 377 0 0 0 8 12 0 0 6 0
cccgci 352 1 0 3 9 12 2 2 3 2
ci 276 7 0 0 4 2 2 1 2 4
ccccgci 256 7 12 17 2 1 18 11 0 0
cci 251 0 0 0 9 4 0 0 2 1
cim 245 2 0 0 7 4 0 0 1 0
cie 237 2 0 0 1 3 1 0 0 0
ccci 202 2 0 0 4 12 0 0 3 3
cir 172 1 1 1 4 2 2 0 0 0
cccci 108 9 5 3 1 0 4 2 1 1
cin 97 1 0 0 2 2 0 0 0 0
ccccci 24 0 4 0 0 1 2 0 0 0
cgci 21 1 1 0 0 0 0 1 0 0
cccoe 21 1 1 4 0 1 0 1 0 0
cieci 19 0 0 0 0 0 1 0 0 0
cif 16 0 0 0 1 0 0 0 0 0
cccccgci 16 3 2 0 0 0 0 0 0 0
coe 12 0 0 0 0 0 0 0 0 0
ccoe 12 0 0 2 0 0 0 1 0 0
ccccg 12 0 1 0 0 0 1 0 0 0
cccg 11 0 0 0 1 0 0 0 0 0
circi 8 0 0 0 0 0 0 0 0 1
ciecgci 8 0 0 0 0 0 0 0 0 0
ccor 8 0 0 2 0 0 0 0 0 0
ccgcir 8 0 0 0 0 0 0 0 0 0
ccccgcir 7 0 1 4 0 0 0 0 0 0
ccg 6 0 0 0 0 0 0 0 0 0
cor 5 0 0 0 0 0 0 0 0 0
cieor 5 0 0 0 1 0 0 0 0 0
cicgci 5 0 0 0 0 0 0 0 0 0
ccgcie 5 0 0 0 0 0 0 0 0 0
cieoe 4 0 0 0 0 0 0 0 0 0
cieccccgci 4 0 0 0 0 0 1 0 0 0
ccie 4 0 0 0 0 0 0 0 0 0
cccir 4 0 0 0 0 0 0 0 0 0
cccgcie 4 0 0 0 0 0 0 1 0 0
ccccc 4 0 1 0 0 0 0 0 0 0
c 4 0 0 0 0 0 0 0 0 0
ciecccgci 3 0 0 0 0 0 0 0 0 0
cic 3 0 0 0 0 0 0 0 0 0
cccie 3 0 0 0 0 0 0 0 0 0
cccgcir 3 0 0 0 0 2 0 0 0 0
ccccgcie 3 0 0 1 0 0 1 0 0 0
cc 3 0 0 0 0 0 0 0 0 0
coecgci 2 0 0 0 1 0 0 0 0 0
ciie 2 0 0 0 0 0 0 0 0 0
cieo 2 0 0 0 0 0 0 0 0 0
cgoe 2 0 0 1 0 0 0 0 0 0
cgcim 2 0 1 0 0 0 0 0 0 0
ccgcim 2 0 0 0 0 0 0 0 0 0
cce 2 0 0 0 0 0 0 0 0 0
ccccif 2 0 0 0 0 0 0 0 0 0
ccc 2 0 0 0 0 0 0 0 0 0
coeor 1 0 0 0 0 0 0 0 0 0
coeci 1 0 0 0 0 0 0 0 0 0
co 1 0 0 0 0 0 0 0 0 0
cirorci 1 0 0 0 0 0 0 0 0 0
cirof 1 0 0 0 0 0 0 0 0 0
ciroeof 1 0 0 0 0 0 0 0 0 0
ciroe 1 0 0 0 0 0 0 0 0 0
circif 1 0 0 0 0 0 0 0 0 0
circie 1 0 0 0 0 0 0 0 0 0
circgci 1 0 0 0 0 0 0 0 0 0
circccci 1 0 0 0 0 0 0 0 0 0
circccccgcie 1 0 0 0 0 0 0 0 0 0
cioc 1 0 0 0 0 0 0 0 0 0
cimci 1 0 0 0 0 0 0 0 0 0
cifo 1 0 0 0 1 0 0 0 0 0
ciecirci 1 0 0 0 0 0 0 0 0 0
ciecircg 1 0 0 0 0 0 0 0 0 0
ciecir 1 0 0 0 0 0 0 0 0 0
ciecim 1 0 0 0 0 0 0 0 0 0
ciecie 1 0 0 0 0 0 0 0 0 0
ciecgcgci 1 0 0 0 0 0 0 0 0 0
cieccci 1 0 0 0 0 0 0 0 0 0
ciecccci 1 0 0 0 0 0 0 0 0 0
ciec 1 0 0 0 0 0 0 0 0 0
cicccgci 1 0 0 0 0 0 0 0 0 0
cgcircie 1 0 1 0 0 0 0 0 0 0
cgcircccci 1 0 1 0 0 0 0 0 0 0
cgcir 1 0 0 0 0 0 0 0 0 0
cgcieor 1 0 0 0 0 0 0 0 0 0
cgcieccor 1 0 0 1 0 0 0 0 0 0
cgcie 1 0 0 0 0 0 0 0 0 0
cg 1 0 0 0 0 0 0 0 0 0
ccoecicg 1 0 0 0 0 0 0 0 0 0
ccoeci 1 0 0 0 0 0 0 0 0 1
ccocgci 1 0 0 0 0 0 0 0 0 0
cco 1 0 0 0 0 0 0 0 0 0
ccir 1 0 0 0 0 0 0 0 0 0
ccieci 1 0 0 0 0 0 0 0 0 0
ccgor 1 0 0 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 0 0 0 0 0 0
ccgcif 1 0 0 0 0 0 0 0 0 0
ccgcieor 1 0 0 0 0 0 0 0 0 0
ccgcci 1 0 0 0 1 0 0 0 0 0
ccgccgci 1 0 0 0 0 0 0 0 0 0
ccgccci 1 0 0 0 0 0 0 0 0 0
ccgccccgci 1 0 0 0 0 0 0 0 0 0
cccor 1 0 0 0 0 0 0 0 0 0
cccoecgci 1 0 0 1 0 0 0 0 0 0
ccciroe 1 0 0 1 0 0 0 0 0 0
cccieci 1 0 0 0 0 0 1 0 0 0
cccgcif 1 0 0 0 0 0 0 0 0 0
cccgccci 1 0 0 0 0 0 0 0 0 0
ccccor 1 0 0 0 0 0 0 0 0 0
ccccoe 1 0 0 0 0 0 0 0 0 0
ccccir 1 0 0 0 0 0 0 0 0 0
cccciecgci 1 0 1 0 0 0 0 0 0 0
ccccic 1 0 0 0 0 0 0 0 0 0
ccccgcirci 1 0 0 0 0 0 0 0 0 0
cccccgcie 1 0 0 0 0 0 0 0 0 0
cccccg 1 0 0 0 0 0 0 0 0 0
cccccci 1 0 1 0 0 0 0 0 0 0
Analysis: to a first approximation, the "ordinary" words are
{ AH oH cg cc.*H e oe H oe.*H Ae ci P e.*H ci.*H oP AP cg.*H Ae.*H } ×
{ ccgci cccgci ci ccccgci cci cim cie ccci cir cccci cin }
Rarer suffixes are
{ ccccci cgci cccoe cieci cif cccccgci coe ccoe ... }
Looking back, we see that the prefixes "cc.*H" are actually
"cccH" and "ccccH".
There is also a "ciH" prefix.
The "ccc[^HP]*" words that we were using before appear to be
"c" prefix.
Looked for more info on "H"-containing prefixes:
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_ci.*H.*_' '_e.*H.*_' '_cg.*H.*_' '_Ae.*H.*_' '_oe.*H.*_'
8 0.13 eHccgci 12 0.21 ciHccgci
7 0.11 eHcccgci 12 0.21 ciHcccgci
6 0.10 eHcim 10 0.17 ciHccci
5 0.08 eccccHcci 4 0.07 ciHcim
4 0.07 eHcir 3 0.05 ciHcie
3 0.05 ecccHcci 2 0.03 ciHcir
3 0.05 eHccci 2 0.03 ciHcin
2 0.03 eccccHcccgci 2 0.03 ciHcci
2 0.03 ecccHci 2 0.03 ciHcccgcir
2 0.03 eHcin 1 0.02 ciroHcci
2 0.03 eHci 1 0.02 cioHci
2 0.03 eHccccgci 1 0.02 ciccccHcci
1 0.02 eoeHcim 1 0.02 ciccccHccci
1 0.02 eoHcif 1 0.02 cicHccci
1 0.02 eccccHcie 1 0.02 ciHci
1 0.02 eccccHccci 1 0.02 ciHcccoe
1 0.02 eHoe 1 0.02 ciHccccgci
1 0.02 eHocgcie 1 0.02 ciHccccci
1 0.02 eHecccci ----- ---- ----
1 0.02 eHe 58 1.00 TOT
1 0.02 eHcoecgci
1 0.02 eHcifo
1 0.02 eHcieor
1 0.02 eHcci
1 0.02 eHccgcci
1 0.02 eHcccg
1 0.02 eHcccci
----- ---- ----
61 1.00 TOT
20 0.17 oeHccgci 2 0.11 cgciHccgci 4 0.31 AeHci
19 0.17 oeHccci 2 0.11 cgciHcccgci 3 0.23 AeHccci
15 0.13 oeHcccgci 2 0.11 cgHccgci 2 0.15 AeHcccgci
10 0.09 oeHci 1 0.06 cgoeHccgci 1 0.08 AeHcirci
7 0.06 oeHcir 1 0.06 cgoHccgci 1 0.08 AeHccoeci
7 0.06 oeHcim 1 0.06 cgoHccci 1 0.08 AeHcci
5 0.04 oeHcin 1 0.06 cgcieHci 1 0.08 AeHcccci
5 0.04 oeHcie 1 0.06 cgcicHcci ----- ---- ----
4 0.03 oeHcci 1 0.06 cgciHcim 13 1.00 TOT
3 0.03 oeHcccci 1 0.06 cgciHci
2 0.02 oeoHci 1 0.06 cgciHcci
2 0.02 oecccHcci 1 0.06 cgciHccci
2 0.02 oeHccccgci 1 0.06 cgcccHcccgci
1 0.01 oeoeHccci 1 0.06 cgHccci
1 0.01 oeoHcir 1 0.06 cgHcccci
1 0.01 oeoHccccgci ----- ---- ----
1 0.01 oeccccHcci 18 1.00 TOT
1 0.01 oeccHci
1 0.01 oePocHcci
1 0.01 oeHom
1 0.01 oeHoe
1 0.01 oeHcoe
1 0.01 oeHcif
1 0.01 oeHcicgci
1 0.01 oeHccg
1 0.01 oeHcccir
1 0.01 oeHccccci
----- ---- ----
115 1.00 TOT
So it seems we got some new prefixes:
{ eH eccccH ciH ciccccH oeH cgciH AeH }
Now that we know that "ccgci" is the most common suffix, let's look for
all its prefixes:
cat bio-j-huc-gut.wds \
| egrep 'ccgci$' \
| sed -e 's/ccgci$//g' \
| wfreq
387 0.25 cc
201 0.13 AH
191 0.12 AHc
85 0.05 oH
73 0.05 ecc
60 0.04 ccc
57 0.04 oHc
38 0.02 oecc
28 0.02 H
27 0.02 cgcc
21 0.01 c
20 0.01 oeH
19 0.01 AHcc
18 0.01 oPcc
18 0.01 Hcc
17 0.01 Pcc
16 0.01 Hc
15 0.01 oeHc
15 0.01 cccHc
12 0.01 cicc
12 0.01 ciHc
12 0.01 ciH
11 0.01 APcc
10 0.01 rcc
10 0.01 oHcc
10 0.01 cccH
8 0.01 eH
7 0.00 ec
7 0.00 eHc
7 0.00 Aecc
6 0.00 oec
6 0.00 eccc
6 0.00 Ac
5 0.00 cgc
5 0.00 ccccHc
4 0.00 oePcc
4 0.00 coeHc
4 0.00 cHc
3 0.00 ccH
3 0.00 cH
3 0.00 Pc
3 0.00 Aeccc
2 0.00 rccc
2 0.00 oeHcc
2 0.00 occ
2 0.00 oPc
2 0.00 eccccHc
2 0.00 eHcc
2 0.00 coecc
2 0.00 coHc
2 0.00 ciec
2 0.00 ciccc
2 0.00 cgciecc
2 0.00 cgciec
2 0.00 cgciHc
2 0.00 cgciH
2 0.00 cgccc
2 0.00 cgH
2 0.00 cg
2 0.00 ccccH
2 0.00 cccPcc
2 0.00 Poecc
2 0.00 Poec
2 0.00 AeHc
2 0.00 Acc
2 0.00 APc
2 0.00 AHccc
1 0.00 rc
1 0.00 orccc
1 0.00 oeoHcc
1 0.00 oeccc
1 0.00 ocgcc
1 0.00 ocHc
1 0.00 oc
1 0.00 oPciecc
1 0.00 oHciecc
1 0.00 oHciec
1 0.00 oAPcc
1 0.00 eocc
1 0.00 ecccPc
1 0.00 ePcc
1 0.00 ePc
1 0.00 coeH
1 0.00 ciecc
1 0.00 ciPcc
1 0.00 ciHcc
1 0.00 cgoeccc
1 0.00 cgoecc
1 0.00 cgoePcc
1 0.00 cgoeH
1 0.00 cgoH
1 0.00 cgecc
1 0.00 cgcccHc
1 0.00 ccocPc
1 0.00 ccoHc
1 0.00 cccoec
1 0.00 ccccPc
1 0.00 cccPc
1 0.00 ccPccc
1 0.00 ccPcc
1 0.00 cPcc
1 0.00 Poeciec
1 0.00 Poecgcc
1 0.00 PciH
1 0.00 Horoecc
1 0.00 Hoec
1 0.00 HcccoHc
1 0.00 Aec
1 0.00 Acgc
1 0.00 AccHc
1 0.00 AcHc
1 0.00 AHoecc
1 0.00 AHcic
1 0.00 AHccgcc
1 0.00 AHccg
----- ---- ----
1562 1.00 TOT
Ditto with "cie":
cat bio-j-huc-gut.wds \
| egrep 'cie$' \
| sed -e 's/cie$//g' \
| wfreq
116 0.35 AH
50 0.15 cg
40 0.12 oH
14 0.04 c
12 0.04
10 0.03 H
9 0.03 ccccg
7 0.02 ccc
7 0.02 cc
6 0.02 r
5 0.02 oeH
3 0.01 e
3 0.01 ciH
2 0.01 oe
2 0.01 oHccg
2 0.01 ccccHc
2 0.01 ccH
2 0.01 Ae
2 0.01 AHccg
2 0.01 AHcccg
1 0.00 rccc
1 0.00 or
1 0.00 ocg
1 0.00 oc
1 0.00 oPccccg
1 0.00 oP
1 0.00 oHcg
1 0.00 oHcccg
1 0.00 oHcc
1 0.00 eor
1 0.00 eccccg
1 0.00 eccccH
1 0.00 eHocg
1 0.00 coeccH
1 0.00 cicgcir
1 0.00 cgcircccccg
1 0.00 cgcie
1 0.00 cgcccccg
1 0.00 ccoH
1 0.00 ccir
1 0.00 cccg
1 0.00 cccc
1 0.00 cccHcc
1 0.00 cccHc
1 0.00 cccH
1 0.00 cPc
1 0.00 cHc
1 0.00 cH
1 0.00 Poecccg
1 0.00 Pccccg
1 0.00 Hoecg
1 0.00 Hcir
1 0.00 Hccg
1 0.00 Hcc
1 0.00 APcccg
1 0.00 AHc
1 0.00 A
----- ---- ----
333 1.00 TOT
Looking for suffixes that do not begin with "c":
cat bio-j-huc-gut.wds \
| sed -e 's/^/_/g' -e 's/$/_/g' \
| compare-contexts '_AH.*_' '_cg.*_' '_cccH.*_'
72 0.20 cgcim 201 0.19 AHccgci 90 0.51 cccHcci
51 0.14 cgcir 191 0.18 AHcccgci 31 0.18 cccHci
50 0.14 cgcie 116 0.11 AHcie 15 0.08 cccHcccgci
36 0.10 cgci 94 0.09 AHcim 11 0.06 cccHccci
27 0.07 cgccccgci 87 0.08 AHccci 10 0.06 cccHccgci
17 0.05 cgoe 79 0.08 AHci 4 0.02 cccH
12 0.03 cgcin 54 0.05 AHcin 3 0.02 cccHcir
6 0.02 cgcif 50 0.05 AHcir 2 0.01 cccHcim
6 0.02 cgcieci 43 0.04 AHcci 2 0.01 cccHcif
5 0.01 cgcirci 21 0.02 AHoe 2 0.01 cccHc
5 0.01 cgcccgci 19 0.02 AHccccgci 1 0.01 cccHcor
4 0.01 cge 12 0.01 AHcccci 1 0.01 cccHcie
4 0.01 cgcccoe 7 0.01 AHcieci 1 0.01 cccHccie
3 0.01 cgor 5 0.00 AHcccg 1 0.01 cccHccg
3 0.01 cgciecgci 4 0.00 AHor 1 0.01 cccHcccie
3 0.01 cgccoe 4 0.00 AHcor 1 0.01 cccHcccci
3 0.01 cgcccci 4 0.00 AHcif 1 0.01 cccHccccg
3 0.01 cgccccci 4 0.00 AHccgcir ----- ---- ----
2 0.01 cgcieo 3 0.00 AHciecgci 177 1.00 TOT
2 0.01 cgciecccgci 3 0.00 AHcicgci
2 0.01 cgcieccccgci 3 0.00 AHccg
2 0.01 cgciHccgci 2 0.00 AHe
2 0.01 cgciHcccgci 2 0.00 AHcic
2 0.01 cgccor 2 0.00 AHccgcie
2 0.01 cgccgci 2 0.00 AHcccgcie
2 0.01 cgccci 2 0.00 AHcccccgci
2 0.01 cgcccccgci 2 0.00 AH
2 0.01 cgHccgci 1 0.00 AHom
1 0.00 cgroe 1 0.00 AHoeoe
1 0.00 cgorcim 1 0.00 AHoecgci
1 0.00 cgoeccccgci 1 0.00 AHoeccccgci
1 0.00 cgoecccccgci 1 0.00 AHoPci
1 0.00 cgoePccccgci 1 0.00 AHcoeci
1 0.00 cgoeHccgci 1 0.00 AHcoe
1 0.00 cgoHccgci 1 0.00 AHcirci
1 0.00 cgoHccci 1 0.00 AHcircgci
1 0.00 cgeccccgci 1 0.00 AHciie
1 0.00 cgcirorci 1 0.00 AHcieoe
1 0.00 cgcirof 1 0.00 AHciecgcgci
1 0.00 cgcircccci 1 0.00 AHciecccci
1 0.00 cgcircccccgcie 1 0.00 AHciec
1 0.00 cgciie 1 0.00 AHcicccgci
1 0.00 cgcieoe 1 0.00 AHcgci
1 0.00 cgciecirci 1 0.00 AHccoe
1 0.00 cgciecircg 1 0.00 AHccir
1 0.00 cgciecir 1 0.00 AHccie
1 0.00 cgciecim 1 0.00 AHccgor
1 0.00 cgciecie 1 0.00 AHccgcim
1 0.00 cgcieHci 1 0.00 AHccgccgci
1 0.00 cgcicHcci 1 0.00 AHccgccccgci
1 0.00 cgciHcim 1 0.00 AHccccg
1 0.00 cgciHci 1 0.00 AHccccci
1 0.00 cgciHcci 1 0.00 AHccccHcci
1 0.00 cgciHccci 1 0.00 AHccc
1 0.00 cgccoecicg 1 0.00 AHcc
1 0.00 cgccccoe ----- ---- ----
1 0.00 cgcccccgcie 1044 1.00 TOT
1 0.00 cgccccc
1 0.00 cgcccHcccgci
1 0.00 cgHccci
1 0.00 cgHcccci
----- ---- ----
363 1.00 TOT
So it seems that { oe or om e } are also valid suffixes.
OK, let's try to parse what we can into prefix:suffix:
split-prefix-suffix
------------------------------------------------
#! /n/gnu/bin/gawk -f
# Attempts to split words into prefix/suffix inserting ":" in between.
BEGIN {
PREFS = "^(AH|AP|Ae|AeH|H|P|cH|ccH|cccH|ccccH|cg|cgciH|ci|ciH|e|eH|eccccH|oH|oP|oe|oeH|r)"
SUFFS = "([co][^HP]*)$"
SPLIT = ( PREFS SUFFS )
}
( $0 ~ SPLIT ) {
match($0, PREFS)
k = RLENGTH
$0 = (substr($0, 1, k) ":" substr($0, k + 1))
print
next
}
/./ { print; next }
------------------------------------------------
cat bio-j-huc-gut.wds \
| split-prefix-suffix \
| egrep -v ':' \
| wfreq
387 0.24 ccccgci
139 0.09 cccci
131 0.08 oe
81 0.05 Ae
61 0.04 ccccci
60 0.04 cccccgci
41 0.03 or
33 0.02 cccoe
30 0.02 ccim
25 0.02 coe
23 0.01 ccoe
21 0.01 cim
21 0.01 cccgci
17 0.01 cccor
14 0.01 ccie
14 0.01 ccci
12 0.01 cie
11 0.01 ccir
10 0.01 cor
10 0.01 cccir
10 0.01 cccc
9 0.01 ccccgcim
9 0.01 ccccgcie
8 0.01 ccccir
7 0.00 cir
7 0.00 cccie
7 0.00 ccccie
7 0.00 ccccg
6 0.00 cce
6 0.00 c
6 0.00 Ar
6 0.00 Acccgci
5 0.00 r
5 0.00 oroe
5 0.00 orci
5 0.00 com
5 0.00 cccPccci
4 0.00 oePccccgci
4 0.00 e
4 0.00 coeHcccgci
4 0.00 cin
4 0.00 cge
4 0.00 ccccoe
4 0.00 ccccgcir
4 0.00 ccccc
4 0.00 cccH
4 0.00 cPccci
4 0.00 AcHccci
4 0.00 A
3 0.00 orcim
3 0.00 ocHcci
3 0.00 oH
3 0.00 ecccHcci
3 0.00 coecccci
3 0.00 coeHccci
3 0.00 cif
3 0.00 cieci
3 0.00 ccoecgci
3 0.00 cccif
3 0.00 cccgcir
3 0.00 ccccgoe
3 0.00 Acgci
2 0.00 rcccHci
2 0.00 oroeci
2 0.00 om
2 0.00 oeoHci
2 0.00 oeeccci
2 0.00 oecccHcci
2 0.00 ocgci
2 0.00 occcci
2 0.00 occccgci
2 0.00 ocHccci
2 0.00 ecccHci
2 0.00 coeccccgci
2 0.00 coHcccgci
2 0.00 ciroe
2 0.00 circi
2 0.00 cimci
2 0.00 ciecccgci
2 0.00 cgHccgci
2 0.00 ccoHci
2 0.00 cccoHci
2 0.00 ccccieci
2 0.00 ccccPcci
2 0.00 cccPccccgci
2 0.00 HoHoe
2 0.00 Accci
2 0.00 Accccgci
2 0.00 AHe
2 0.00 AH
1 0.00 rcicHcci
1 0.00 orcir
1 0.00 orcin
1 0.00 orcie
1 0.00 orcccci
1 0.00 orcccccgci
1 0.00 on
1 0.00 oeoeHccci
1 0.00 oeoHcir
1 0.00 oeoHccccgci
1 0.00 oeeof
1 0.00 oeccccHcci
1 0.00 oeccHci
1 0.00 oePocHcci
1 0.00 oeA
1 0.00 ocicccci
1 0.00 ocgcir
1 0.00 ocgcim
1 0.00 ocgcie
1 0.00 ocgccccgci
1 0.00 occie
1 0.00 occcgci
1 0.00 occccin
1 0.00 occccci
1 0.00 occcPoec
1 0.00 ocHcor
1 0.00 ocHccoe
1 0.00 ocHcccgci
1 0.00 oPcieHcim
1 0.00 oHeor
1 0.00 oHeoe
1 0.00 oHcieHci
1 0.00 oHccoHcir
1 0.00 oAe
1 0.00 oAPccccgci
1 0.00 oAHci
1 0.00 oA
1 0.00 o
1 0.00 er
1 0.00 eoeHcim
1 0.00 eoHcif
1 0.00 eecgcir
1 0.00 ecccPcccgci
1 0.00 ePoe
1 0.00 ePcccgci
1 0.00 ePccccgci
1 0.00 eHecccci
1 0.00 eHe
1 0.00 coeor
1 0.00 coeci
1 0.00 coecgci
1 0.00 coecccoe
1 0.00 coeccHcie
1 0.00 coeHci
1 0.00 coeHcci
1 0.00 coeHccgci
1 0.00 cocgcir
1 0.00 cocHccci
1 0.00 coHoe
1 0.00 ciror
1 0.00 ciroHcci
1 0.00 circir
1 0.00 cioHci
1 0.00 cieorci
1 0.00 cieor
1 0.00 cieoe
1 0.00 cieciecgci
1 0.00 cieccccgci
1 0.00 cieccccc
1 0.00 ciccccHcci
1 0.00 ciccccHccci
1 0.00 cicPcim
1 0.00 cicHccci
1 0.00 ciPcccci
1 0.00 ciPccccgci
1 0.00 ci
1 0.00 cgroe
1 0.00 cgoePccccgci
1 0.00 cgoeHccgci
1 0.00 cgoHccgci
1 0.00 cgoHccci
1 0.00 cgeccccgci
1 0.00 cgcieHci
1 0.00 cgcicHcci
1 0.00 cgcccHcccgci
1 0.00 cgHccci
1 0.00 cgHcccci
1 0.00 cec
1 0.00 ccor
1 0.00 ccoeo
1 0.00 ccoeci
1 0.00 ccoecccci
1 0.00 ccoeHcccci
1 0.00 ccocgcim
1 0.00 ccocPcccgci
1 0.00 ccocHcci
1 0.00 ccoHcim
1 0.00 ccoHcie
1 0.00 ccoHcccgci
1 0.00 ccircie
1 0.00 ccino
1 0.00 ccieci
1 0.00 ccieccccg
1 0.00 ccieHccci
1 0.00 cciHcim
1 0.00 cci
1 0.00 ccer
1 0.00 ccecgcim
1 0.00 ccecgci
1 0.00 cceccPccccci
1 0.00 ccec
1 0.00 cccoeoe
1 0.00 cccoeo
1 0.00 cccoecgci
1 0.00 cccoecccgci
1 0.00 cccoecccci
1 0.00 ccciror
1 0.00 cccirci
1 0.00 cccieoeci
1 0.00 ccciHccci
1 0.00 cccgoe
1 0.00 cccgcin
1 0.00 cccgcif
1 0.00 cccgcie
1 0.00 ccccor
1 0.00 ccccieor
1 0.00 cccciHci
1 0.00 ccccgor
1 0.00 ccccgcif
1 0.00 ccccgciecgci
1 0.00 ccccgciHcir
1 0.00 ccccgccci
1 0.00 cccccoe
1 0.00 cccccim
1 0.00 cccccie
1 0.00 cccccgcir
1 0.00 cccccg
1 0.00 cccccci
1 0.00 cccccHcci
1 0.00 cccccHccci
1 0.00 ccccPcccgci
1 0.00 cccPoe
1 0.00 cccPci
1 0.00 cccPcccgci
1 0.00 cccP
1 0.00 ccPcim
1 0.00 ccPccccgci
1 0.00 ccPcccccgci
1 0.00 cc
1 0.00 cPcoe
1 0.00 cPccir
1 0.00 cPccie
1 0.00 cPccgor
1 0.00 cPcccci
1 0.00 cPccccgci
1 0.00 PoecgciHci
1 0.00 PoeHcccoe
1 0.00 PoeHccci
1 0.00 PoHcin
1 0.00 PciHccgci
1 0.00 HoePci
1 0.00 HoeHcci
1 0.00 HocHccci
1 0.00 HoHcieci
1 0.00 HciAHci
1 0.00 HcccoHcccgci
1 0.00 HcccgoeHcgci
1 0.00 H
1 0.00 Arcim
1 0.00 Aoe
1 0.00 An
1 0.00 Acir
1 0.00 Acim
1 0.00 Acie
1 0.00 AciHci
1 0.00 AcgciHcci
1 0.00 Acgccci
1 0.00 Acgcccgci
1 0.00 Acgccccg
1 0.00 Acccci
1 0.00 AccHcccgci
1 0.00 AcHcci
1 0.00 AcHcccgci
1 0.00 AcHccc
1 0.00 AP
1 0.00 AHoPci
1 0.00 AHccccHcci
1 0.00 AAHccci
----- ---- ----
1585 1.00 TOT
I must do something about the "c" prefix....
cat bio-j-huc-gut.wds \
| split-prefix-suffix \
| egrep ':' \
| sed -e 's/^.*://g' \
| wfreq
All suffixes recognized by the code:
376 0.12 ccgci
355 0.11 cccgci
267 0.08 ci
265 0.08 ccccgci
255 0.08 cim
243 0.08 cie
240 0.08 cci
201 0.06 ccci
174 0.06 cir
111 0.04 cccci
102 0.03 oe
98 0.03 cin
41 0.01 or
25 0.01 ccccci
21 0.01 cgci
21 0.01 cccoe
20 0.01 cieci
18 0.01 cif
18 0.01 cccccgci
14 0.00 ccccg
13 0.00 coe
12 0.00 ccoe
11 0.00 cccg
9 0.00 circi
8 0.00 ciecgci
8 0.00 ccor
8 0.00 ccgcir
7 0.00 oeci
7 0.00 ccccgcir
6 0.00 cor
6 0.00 ccg
5 0.00 om
5 0.00 o
5 0.00 cieor
5 0.00 cicgci
5 0.00 ccie
5 0.00 ccgcie
4 0.00 oecgci
4 0.00 oeccccgci
4 0.00 cieoe
4 0.00 cieccccgci
4 0.00 cccir
4 0.00 cccgcie
4 0.00 ccccc
4 0.00 c
3 0.00 oecccgci
3 0.00 ciecccgci
3 0.00 cic
3 0.00 cccie
3 0.00 cccgcir
3 0.00 ccccgcie
3 0.00 ccc
3 0.00 cc
2 0.00 oroe
2 0.00 orcim
2 0.00 oeccci
2 0.00 oecccci
2 0.00 coecgci
2 0.00 ciie
2 0.00 cieo
2 0.00 cgoe
2 0.00 cgcim
2 0.00 ccgcim
2 0.00 cce
2 0.00 ccccif
1 0.00 oroeccccgci
1 0.00 orcin
1 0.00 orcie
1 0.00 orccci
1 0.00 oeor
1 0.00 oeof
1 0.00 oeoe
1 0.00 oecircir
1 0.00 oecim
1 0.00 oeciecccgci
1 0.00 oecgcie
1 0.00 oecgccccgci
1 0.00 oecccgcie
1 0.00 oecccg
1 0.00 oeccccg
1 0.00 oecccccgci
1 0.00 ocgcie
1 0.00 ocg
1 0.00 occci
1 0.00 occccgci
1 0.00 coeor
1 0.00 coeci
1 0.00 co
1 0.00 cirorci
1 0.00 cirof
1 0.00 ciroeof
1 0.00 ciroe
1 0.00 circif
1 0.00 circie
1 0.00 circgci
1 0.00 circccci
1 0.00 circccccgcie
1 0.00 cioc
1 0.00 cimci
1 0.00 cifo
1 0.00 ciecirci
1 0.00 ciecircg
1 0.00 ciecir
1 0.00 ciecim
1 0.00 ciecie
1 0.00 ciecgcgci
1 0.00 ciecce
1 0.00 cieccci
1 0.00 ciecccci
1 0.00 ciec
1 0.00 cicccgci
1 0.00 cgcircie
1 0.00 cgcircccci
1 0.00 cgcir
1 0.00 cgcieor
1 0.00 cgcieccor
1 0.00 cgcie
1 0.00 cg
1 0.00 ccoecicg
1 0.00 ccoeci
1 0.00 ccocgci
1 0.00 cco
1 0.00 ccir
1 0.00 ccin
1 0.00 ccieci
1 0.00 ccgor
1 0.00 ccgcioe
1 0.00 ccgcif
1 0.00 ccgcieor
1 0.00 ccgcci
1 0.00 ccgccgci
1 0.00 ccgccci
1 0.00 ccgccccgci
1 0.00 cccor
1 0.00 cccoecgci
1 0.00 ccciroe
1 0.00 cccieci
1 0.00 cccgcif
1 0.00 cccgciA
1 0.00 cccgccci
1 0.00 ccccor
1 0.00 ccccoe
1 0.00 ccccir
1 0.00 cccciecgci
1 0.00 cccciecg
1 0.00 ccccie
1 0.00 ccccic
1 0.00 ccccgcirci
1 0.00 cccccgcie
1 0.00 cccccg
1 0.00 cccccci
1 0.00 cccc
----- ---- ----
3157 1.00 TOT
In reverse-lex order:
1 0.00 cccgciA
4 0.00 c
3 0.00 cc
3 0.00 ccc
1 0.00 cccc
4 0.00 ccccc
1 0.00 ciec
3 0.00 cic
1 0.00 ccccic
1 0.00 cioc
2 0.00 cce
1 0.00 ciecce
243 0.08 cie
5 0.00 ccie
3 0.00 cccie
1 0.00 ccccie
1 0.00 ciecie
1 0.00 cgcie
5 0.00 ccgcie
4 0.00 cccgcie
3 0.00 ccccgcie
1 0.00 cccccgcie
1 0.00 circccccgcie
1 0.00 oecccgcie
1 0.00 oecgcie
1 0.00 ocgcie
1 0.00 circie
1 0.00 cgcircie
1 0.00 orcie
2 0.00 ciie
102 0.03 oe
13 0.00 coe
12 0.00 ccoe
21 0.01 cccoe
1 0.00 ccccoe
4 0.00 cieoe
1 0.00 oeoe
2 0.00 cgoe
1 0.00 ccgcioe
1 0.00 ciroe
1 0.00 ccciroe
2 0.00 oroe
18 0.01 cif
2 0.00 ccccif
1 0.00 ccgcif
1 0.00 cccgcif
1 0.00 circif
1 0.00 oeof
1 0.00 ciroeof
1 0.00 cirof
1 0.00 cg
6 0.00 ccg
11 0.00 cccg
14 0.00 ccccg
1 0.00 cccccg
1 0.00 oeccccg
1 0.00 oecccg
1 0.00 cccciecg
1 0.00 ccoecicg
1 0.00 ocg
1 0.00 ciecircg
267 0.08 ci
240 0.08 cci
201 0.06 ccci
111 0.04 cccci
25 0.01 ccccci
1 0.00 cccccci
1 0.00 ciecccci
2 0.00 oecccci
1 0.00 circccci
1 0.00 cgcircccci
1 0.00 cieccci
2 0.00 oeccci
1 0.00 ccgccci
1 0.00 cccgccci
1 0.00 occci
1 0.00 orccci
1 0.00 ccgcci
20 0.01 cieci
1 0.00 ccieci
1 0.00 cccieci
7 0.00 oeci
1 0.00 coeci
1 0.00 ccoeci
21 0.01 cgci
376 0.12 ccgci
355 0.11 cccgci
265 0.08 ccccgci
18 0.01 cccccgci
1 0.00 oecccccgci
4 0.00 cieccccgci
4 0.00 oeccccgci
1 0.00 oroeccccgci
1 0.00 ccgccccgci
1 0.00 oecgccccgci
1 0.00 occccgci
3 0.00 ciecccgci
1 0.00 oeciecccgci
3 0.00 oecccgci
1 0.00 cicccgci
1 0.00 ccgccgci
8 0.00 ciecgci
1 0.00 cccciecgci
4 0.00 oecgci
2 0.00 coecgci
1 0.00 cccoecgci
1 0.00 ciecgcgci
5 0.00 cicgci
1 0.00 ccocgci
1 0.00 circgci
1 0.00 cimci
9 0.00 circi
1 0.00 ciecirci
1 0.00 ccccgcirci
1 0.00 cirorci
255 0.08 cim
1 0.00 ciecim
1 0.00 oecim
2 0.00 cgcim
2 0.00 ccgcim
2 0.00 orcim
5 0.00 om
98 0.03 cin
1 0.00 ccin
1 0.00 orcin
5 0.00 o
1 0.00 co
1 0.00 cco
2 0.00 cieo
1 0.00 cifo
174 0.06 cir
1 0.00 ccir
4 0.00 cccir
1 0.00 ccccir
1 0.00 ciecir
1 0.00 cgcir
8 0.00 ccgcir
3 0.00 cccgcir
7 0.00 ccccgcir
1 0.00 oecircir
41 0.01 or
6 0.00 cor
8 0.00 ccor
1 0.00 cccor
1 0.00 ccccor
1 0.00 cgcieccor
5 0.00 cieor
1 0.00 cgcieor
1 0.00 ccgcieor
1 0.00 oeor
1 0.00 coeor
1 0.00 ccgor
Note the isolated peaks at suffixes that beging with "ci" or "o".
These sharp peaks are evidence that the prefixes recognized above
do NOT have alternates with a "c" appended. That is, the suffixes
21 0.01 cgci
376 0.12 ccgci
355 0.11 cccgci
265 0.08 ccccgci
18 0.01 cccccgci
appear to be different suffixes, and not the same "ccgci"
suffix attached to different prefixes.
Here are the most significant suffixes:
243 0.08 cie
102 0.03 oe
13 0.00 coe
12 0.00 ccoe
21 0.01 cccoe
18 0.01 cif
11 0.00 cccg
14 0.00 ccccg
267 0.08 ci
240 0.08 cci
201 0.06 ccci
111 0.04 cccci
25 0.01 ccccci
20 0.01 cieci
21 0.01 cgci
376 0.12 ccgci
355 0.11 cccgci
265 0.08 ccccgci
18 0.01 cccccgci
255 0.08 cim
98 0.03 cin
174 0.06 cir
41 0.01 or
Removing the strings of "c":
cat bio-j-huc-gut.wds \
| split-prefix-suffix \
| egrep ':c' \
| sed -e 's/^.*:c*//g' \
| wfreq
1035 0.35 gci
845 0.29 i
255 0.09 im
252 0.09 ie
180 0.06 ir
99 0.03 in
47 0.02 oe
33 0.01 g
22 0.01 ieci
20 0.01 if
19 0.01 gcir
16 0.01 or
15 0.01
14 0.00 gcie
9 0.00 irci
9 0.00 iecgci
5 0.00 ieor
5 0.00 icgci
4 0.00 ieoe
4 0.00 ieccccgci
4 0.00 ic
4 0.00 gcim
3 0.00 oecgci
3 0.00 iecccgci
2 0.00 oeci
2 0.00 o
2 0.00 iroe
2 0.00 iie
2 0.00 ieo
2 0.00 goe
2 0.00 gcif
2 0.00 gcieor
2 0.00 gccci
2 0.00 e
1 0.00 oeor
1 0.00 oecicg
1 0.00 ocgci
1 0.00 irorci
1 0.00 irof
1 0.00 iroeof
1 0.00 ircif
1 0.00 ircie
1 0.00 ircgci
1 0.00 ircccci
1 0.00 ircccccgcie
1 0.00 ioc
1 0.00 imci
1 0.00 ifo
1 0.00 iecirci
1 0.00 iecircg
1 0.00 iecir
1 0.00 iecim
1 0.00 iecie
1 0.00 iecgcgci
1 0.00 iecg
1 0.00 iecce
1 0.00 ieccci
1 0.00 iecccci
1 0.00 iec
1 0.00 icccgci
1 0.00 gor
1 0.00 gcircie
1 0.00 gcirci
1 0.00 gcircccci
1 0.00 gcioe
1 0.00 gcieccor
1 0.00 gciA
1 0.00 gcci
1 0.00 gccgci
1 0.00 gccccgci
----- ---- ----
2958 1.00 TOT
Redefined suffixes, and added a few prefixes:
split-prefix-suffix
------------------------------------------------
#! /n/gnu/bin/gawk -f
# Attempts to split words into prefix/suffix inserting ":" in between.
BEGIN {
PREFS = "^(AH|AP|Ae|AeH|H|P|cH|ccH|cccH|ccccH|cg|cgciH|ci|ciH|e|eH|ecccH|eccccH|oH|oP|oe|oeH|oecccH|coeH|r|c)"
SUFFS = "([coe][cgiroe]*([mnrfe]|))$"
SPLIT = ( PREFS SUFFS )
}
( $0 ~ SPLIT ) {
match($0, PREFS)
k = RLENGTH
$0 = (substr($0, 1, k) ":" substr($0, k + 1))
print
next
}
/./ { print; next }
------------------------------------------------
Here are the suffixes recognized by this code:
746 0.18 cccgci
398 0.09 ccgci
343 0.08 ccci
325 0.08 ccccgci
285 0.07 cim
271 0.06 ci
260 0.06 cci
257 0.06 cie
185 0.04 cir
172 0.04 cccci
127 0.03 oe
98 0.02 cin
51 0.01 or
45 0.01 ccoe
36 0.01 coe
26 0.01 ccccci
25 0.01 ccor
25 0.01 cccoe
21 0.00 cieci
21 0.00 cgci
19 0.00 e
18 0.00 cif
18 0.00 cccg
18 0.00 cccccgci
15 0.00 ccccg
13 0.00 cccgcie
13 0.00 ccc
12 0.00 ccie
12 0.00 cccir
11 0.00 ccir
11 0.00 ccgcir
10 0.00 om
10 0.00 cccie
9 0.00 circi
9 0.00 cccgcim
8 0.00 oeci
8 0.00 ciecgci
8 0.00 ccccgcir
7 0.00 cor
7 0.00 cccgcir
6 0.00 oeccccgci
6 0.00 ce
6 0.00 ccgcie
6 0.00 ccg
5 0.00 oecgci
5 0.00 oecccci
5 0.00 o
5 0.00 coecgci
5 0.00 cieor
5 0.00 cicgci
5 0.00 cccc
5 0.00 c
4 0.00 cieoe
4 0.00 cieccccgci
4 0.00 ccccc
3 0.00 oecccgci
3 0.00 eci
3 0.00 ciecccgci
3 0.00 cic
3 0.00 ccif
3 0.00 cccieci
3 0.00 cccgoe
3 0.00 ccccgcie
3 0.00 cc
2 0.00 oroe
2 0.00 orcim
2 0.00 oeor
2 0.00 oeccci
2 0.00 eor
2 0.00 eoe
2 0.00 eccci
2 0.00 ecccgci
2 0.00 eccccgci
2 0.00 coeci
2 0.00 circie
2 0.00 ciie
2 0.00 cieo
2 0.00 cgoe
2 0.00 cgcim
2 0.00 ccgcim
2 0.00 ccgcif
2 0.00 cce
2 0.00 cccor
2 0.00 cccgcif
2 0.00 cccgccci
2 0.00 ccccoe
2 0.00 ccccif
2 0.00 ccccie
1 0.00 oroeccccgci
1 0.00 orcin
1 0.00 orcie
1 0.00 orccci
1 0.00 oeof
1 0.00 oeoe
1 0.00 oecircir
1 0.00 oecim
1 0.00 oeciecccgci
1 0.00 oecgcie
1 0.00 oecgccccgci
1 0.00 oecccoe
1 0.00 oecccgcie
1 0.00 oecccg
1 0.00 oeccccg
1 0.00 oecccccgci
1 0.00 ocgcir
1 0.00 ocgcie
1 0.00 ocg
1 0.00 occci
1 0.00 occccgci
1 0.00 eorci
1 0.00 eof
1 0.00 eciecgci
1 0.00 ecgcir
1 0.00 ecccci
1 0.00 eccccc
1 0.00 ec
1 0.00 coeor
1 0.00 coeo
1 0.00 coecccci
1 0.00 cocgcim
1 0.00 co
1 0.00 cirorci
1 0.00 cirof
1 0.00 ciroeof
1 0.00 ciroe
1 0.00 circif
1 0.00 circgci
1 0.00 circccci
1 0.00 circccccgcie
1 0.00 cioc
1 0.00 ciecirci
1 0.00 ciecircg
1 0.00 ciecir
1 0.00 ciecim
1 0.00 ciecie
1 0.00 ciecgcgci
1 0.00 ciecce
1 0.00 cieccci
1 0.00 ciecccci
1 0.00 cieccccg
1 0.00 ciec
1 0.00 cicccgci
1 0.00 cgcircie
1 0.00 cgcircccci
1 0.00 cgcir
1 0.00 cgcieor
1 0.00 cgcieccor
1 0.00 cgcie
1 0.00 cg
1 0.00 cer
1 0.00 cecgcim
1 0.00 cecgci
1 0.00 cec
1 0.00 ccoeoe
1 0.00 ccoeo
1 0.00 ccoecicg
1 0.00 ccoeci
1 0.00 ccoecgci
1 0.00 ccoecccgci
1 0.00 ccoecccci
1 0.00 ccocgci
1 0.00 cco
1 0.00 cciror
1 0.00 ccirci
1 0.00 ccin
1 0.00 ccieoeci
1 0.00 ccieci
1 0.00 ccgor
1 0.00 ccgoe
1 0.00 ccgcioe
1 0.00 ccgcin
1 0.00 ccgcieor
1 0.00 ccgcci
1 0.00 ccgccgci
1 0.00 ccgccci
1 0.00 ccgccccgci
1 0.00 cccoecgci
1 0.00 ccciroe
1 0.00 cccieor
1 0.00 cccgor
1 0.00 cccgciecgci
1 0.00 ccccor
1 0.00 ccccir
1 0.00 ccccim
1 0.00 cccciecgci
1 0.00 cccciecg
1 0.00 ccccic
1 0.00 ccccgcirci
1 0.00 cccccgcie
1 0.00 cccccg
1 0.00 cccccci
----- ---- ----
4207 1.00 TOT
In reverse lex order:
5 0.00 c
3 0.00 cc
13 0.00 ccc
5 0.00 cccc
4 0.00 ccccc
1 0.00 eccccc
1 0.00 ec
1 0.00 cec
1 0.00 ciec
3 0.00 cic
1 0.00 ccccic
1 0.00 cioc
19 0.00 e
6 0.00 ce
2 0.00 cce
1 0.00 ciecce
257 0.06 cie
12 0.00 ccie
10 0.00 cccie
2 0.00 ccccie
1 0.00 ciecie
1 0.00 cgcie
6 0.00 ccgcie
13 0.00 cccgcie
3 0.00 ccccgcie
1 0.00 cccccgcie
1 0.00 circccccgcie
1 0.00 oecccgcie
1 0.00 oecgcie
1 0.00 ocgcie
2 0.00 circie
1 0.00 cgcircie
1 0.00 orcie
2 0.00 ciie
127 0.03 oe
36 0.01 coe
45 0.01 ccoe
25 0.01 cccoe
2 0.00 ccccoe
1 0.00 oecccoe
2 0.00 eoe
4 0.00 cieoe
1 0.00 oeoe
1 0.00 ccoeoe
2 0.00 cgoe
1 0.00 ccgoe
3 0.00 cccgoe
1 0.00 ccgcioe
1 0.00 ciroe
1 0.00 ccciroe
2 0.00 oroe
18 0.00 cif
3 0.00 ccif
2 0.00 ccccif
2 0.00 ccgcif
2 0.00 cccgcif
1 0.00 circif
1 0.00 eof
1 0.00 oeof
1 0.00 ciroeof
1 0.00 cirof
1 0.00 cg
6 0.00 ccg
18 0.00 cccg
15 0.00 ccccg
1 0.00 cccccg
1 0.00 cieccccg
1 0.00 oeccccg
1 0.00 oecccg
1 0.00 cccciecg
1 0.00 ccoecicg
1 0.00 ocg
1 0.00 ciecircg
271 0.06 ci
260 0.06 cci
343 0.08 ccci
172 0.04 cccci
26 0.01 ccccci
1 0.00 cccccci
1 0.00 ecccci
1 0.00 ciecccci
5 0.00 oecccci
1 0.00 coecccci
1 0.00 ccoecccci
1 0.00 circccci
1 0.00 cgcircccci
2 0.00 eccci
1 0.00 cieccci
2 0.00 oeccci
1 0.00 ccgccci
2 0.00 cccgccci
1 0.00 occci
1 0.00 orccci
1 0.00 ccgcci
3 0.00 eci
21 0.00 cieci
1 0.00 ccieci
3 0.00 cccieci
8 0.00 oeci
2 0.00 coeci
1 0.00 ccoeci
1 0.00 ccieoeci
21 0.00 cgci
398 0.09 ccgci
746 0.18 cccgci
325 0.08 ccccgci
18 0.00 cccccgci
1 0.00 oecccccgci
2 0.00 eccccgci
4 0.00 cieccccgci
6 0.00 oeccccgci
1 0.00 oroeccccgci
1 0.00 ccgccccgci
1 0.00 oecgccccgci
1 0.00 occccgci
2 0.00 ecccgci
3 0.00 ciecccgci
1 0.00 oeciecccgci
3 0.00 oecccgci
1 0.00 ccoecccgci
1 0.00 cicccgci
1 0.00 ccgccgci
1 0.00 cecgci
8 0.00 ciecgci
1 0.00 cccciecgci
1 0.00 eciecgci
1 0.00 cccgciecgci
5 0.00 oecgci
5 0.00 coecgci
1 0.00 ccoecgci
1 0.00 cccoecgci
1 0.00 ciecgcgci
5 0.00 cicgci
1 0.00 ccocgci
1 0.00 circgci
9 0.00 circi
1 0.00 ccirci
1 0.00 ciecirci
1 0.00 ccccgcirci
1 0.00 eorci
1 0.00 cirorci
285 0.07 cim
1 0.00 ccccim
1 0.00 ciecim
1 0.00 oecim
2 0.00 cgcim
2 0.00 ccgcim
9 0.00 cccgcim
1 0.00 cecgcim
1 0.00 cocgcim
2 0.00 orcim
10 0.00 om
98 0.02 cin
1 0.00 ccin
1 0.00 ccgcin
1 0.00 orcin
5 0.00 o
1 0.00 co
1 0.00 cco
2 0.00 cieo
1 0.00 coeo
1 0.00 ccoeo
1 0.00 cer
185 0.04 cir
11 0.00 ccir
12 0.00 cccir
1 0.00 ccccir
1 0.00 ciecir
1 0.00 cgcir
11 0.00 ccgcir
7 0.00 cccgcir
8 0.00 ccccgcir
1 0.00 ecgcir
1 0.00 ocgcir
1 0.00 oecircir
51 0.01 or
7 0.00 cor
25 0.01 ccor
2 0.00 cccor
1 0.00 ccccor
1 0.00 cgcieccor
2 0.00 eor
5 0.00 cieor
1 0.00 cccieor
1 0.00 cgcieor
1 0.00 ccgcieor
2 0.00 oeor
1 0.00 coeor
1 0.00 ccgor
1 0.00 cccgor
1 0.00 cciror
These are the significant ones (15 or more occurrences):
19 0.00 e
257 0.06 cie
127 0.03 oe
36 0.01 coe
45 0.01 ccoe
25 0.01 cccoe
18 0.00 cif
18 0.00 cccg
15 0.00 ccccg
271 0.06 ci
260 0.06 cci
343 0.08 ccci
172 0.04 cccci
26 0.01 ccccci
21 0.00 cieci
21 0.00 cgci
398 0.09 ccgci
746 0.18 cccgci
325 0.08 ccccgci
18 0.00 cccccgci
285 0.07 cim
98 0.02 cin
185 0.04 cir
51 0.01 or
25 0.01 ccor
Stripping the "[coe]c*" prefix of all suffixes:
cat bio-j-huc-gut.wds \
| split-prefix-suffix \
| egrep ':' \
| sed -e 's/^.*:[coe]c*//g' \
| wfreq
1513 0.36 gci
1080 0.26 i
286 0.07 im
281 0.07 ie
209 0.05 ir
135 0.03 e
110 0.03 oe
99 0.02 in
56 0.01
51 0.01 r
42 0.01 g
37 0.01 or
29 0.01 gcir
25 0.01 ieci
25 0.01 gcie
23 0.01 if
13 0.00 gcim
10 0.00 m
10 0.00 irci
10 0.00 iecgci
8 0.00 eci
7 0.00 oecgci
6 0.00 ieor
6 0.00 goe
6 0.00 ecgci
6 0.00 eccccgci
5 0.00 icgci
5 0.00 ecccci
4 0.00 ieoe
4 0.00 ieccccgci
4 0.00 ic
4 0.00 gcif
3 0.00 oeci
3 0.00 iecccgci
3 0.00 gccci
3 0.00 ecccgci
2 0.00 roe
2 0.00 rcim
2 0.00 oeo
2 0.00 oecccci
2 0.00 o
2 0.00 iroe
2 0.00 ircie
2 0.00 iie
2 0.00 ieo
2 0.00 gor
2 0.00 gcieor
2 0.00 eor
2 0.00 eccci
1 0.00 roeccccgci
1 0.00 rcin
1 0.00 rcie
1 0.00 rccci
1 0.00 orci
1 0.00 of
1 0.00 oeor
1 0.00 oeoe
1 0.00 oecicg
1 0.00 oecccgci
1 0.00 ocgcim
1 0.00 ocgci
1 0.00 irorci
1 0.00 iror
1 0.00 irof
1 0.00 iroeof
1 0.00 ircif
1 0.00 ircgci
1 0.00 ircccci
1 0.00 ircccccgcie
1 0.00 ioc
1 0.00 ieoeci
1 0.00 iecirci
1 0.00 iecircg
1 0.00 iecir
1 0.00 iecim
1 0.00 iecie
1 0.00 iecgcgci
1 0.00 iecg
1 0.00 iecce
1 0.00 ieccci
1 0.00 iecccci
1 0.00 ieccccg
1 0.00 iec
1 0.00 icccgci
1 0.00 gcircie
1 0.00 gcirci
1 0.00 gcircccci
1 0.00 gcioe
1 0.00 gcin
1 0.00 gciecgci
1 0.00 gcieccor
1 0.00 gcci
1 0.00 gccgci
1 0.00 gccccgci
1 0.00 er
1 0.00 eof
1 0.00 eoe
1 0.00 ecircir
1 0.00 ecim
1 0.00 eciecccgci
1 0.00 ecgcim
1 0.00 ecgcie
1 0.00 ecgccccgci
1 0.00 ecccoe
1 0.00 ecccgcie
1 0.00 ecccg
1 0.00 eccccg
1 0.00 ecccccgci
1 0.00 ec
----- ---- ----
4207 1.00 TOT
The significant ones (mostly >40 cases)
56 0.01 _
135 0.03 e
42 0.01 g
1513 0.36 gci
1080 0.26 i
281 0.07 ie
23 0.01 if
286 0.07 im
99 0.02 in
209 0.05 ir
110 0.03 oe
37 0.01 or
51 0.01 r
Redefined split-prefix-suffix accordingly:
SUFFS = "([coe]c*(|e|g|gci|i|ie|if|im|in|ir|oe|or|r))$"
Let's see what prefixes we get now:
cat bio-j-huc-gut.wds \
| split-prefix-suffix \
| egrep ':' \
| sed -e 's/:.*$//g' \
| wfreq
1000 0.25 AH
921 0.23 c
412 0.11 oH
307 0.08 cg
194 0.05 e
173 0.04 cccH
147 0.04 oe
134 0.03 H
107 0.03 ccccH
103 0.03 oeH
65 0.02 r
51 0.01 ciH
50 0.01 ci
40 0.01 eH
40 0.01 P
38 0.01 Ae
34 0.01 oP
21 0.01 cH
21 0.01 AP
19 0.00 ccH
11 0.00 AeH
10 0.00 coeH
9 0.00 eccccH
8 0.00 cgciH
5 0.00 ecccH
2 0.00 oecccH
----- ---- ----
3922 1.00 TOT
Keping only the significant ones ( >20 occurrences:
1000 0.25 AH
21 0.01 AP
38 0.01 Ae
134 0.03 H
40 0.01 P
921 0.23 c
21 0.01 cH
173 0.04 cccH
107 0.03 ccccH
307 0.08 cg
50 0.01 ci
51 0.01 ciH
194 0.05 e
40 0.01 eH
412 0.11 oH
34 0.01 oP
147 0.04 oe
103 0.03 oeH
65 0.02 r
Fixing split-prefix-suffix:
PREFS = "^(AH|AP|Ae|H|P|c|cH|cccH|ccccH|cg|ci|ciH|e|eH|oH|oP|oe|oeH|r)"
Listing again the suffixes, without "[coe]c*" prefixes:
cat bio-j-huc-gut.wds \
| split-prefix-suffix \
| egrep ':' \
| sed -e 's/^.*:[coe]c*//g' \
| wfreq
1497 0.39 gci
1042 0.27 i
284 0.07 im
278 0.07 ie
208 0.05 ir
132 0.03 e
109 0.03 oe
99 0.03 in
56 0.01
51 0.01 r
42 0.01 g
37 0.01 or
23 0.01 if
----- ---- ----
3858 1.00 TOT
The complete suffixes:
736 0.19 cccgci
392 0.10 ccgci
333 0.09 ccci
325 0.08 ccccgci
283 0.07 cim
257 0.07 ci
254 0.07 cie
247 0.06 cci
184 0.05 cir
171 0.04 cccci
124 0.03 oe
98 0.03 cin
51 0.01 or
45 0.01 ccoe
35 0.01 coe
26 0.01 ccccci
25 0.01 ccor
25 0.01 cccoe
21 0.01 cgci
19 0.00 e
18 0.00 cif
18 0.00 cccg
18 0.00 cccccgci
15 0.00 ccccg
13 0.00 ccc
12 0.00 ccie
12 0.00 cccir
11 0.00 ccir
10 0.00 cccie
7 0.00 cor
6 0.00 ce
6 0.00 ccg
5 0.00 o
5 0.00 cccc
5 0.00 c
4 0.00 ccccc
3 0.00 eci
3 0.00 ccif
3 0.00 cc
2 0.00 eor
2 0.00 eoe
2 0.00 eccci
2 0.00 ecccgci
2 0.00 eccccgci
2 0.00 cce
2 0.00 cccor
2 0.00 ccccoe
2 0.00 ccccif
2 0.00 ccccie
1 0.00 ocg
1 0.00 occci
1 0.00 occccgci
1 0.00 ecccci
1 0.00 eccccc
1 0.00 ec
1 0.00 cg
1 0.00 ccin
1 0.00 ccccor
1 0.00 ccccir
1 0.00 ccccim
1 0.00 cccccg
1 0.00 cccccci
----- ---- ----
3858 1.00 TOT
Removed suffixes beginning with "e":
SUFFS = "([co]c*(|e|g|gci|i|ie|if|im|in|ir|oe|or|r))$"
Tabulating prefixes:
998 0.26 AH
920 0.24 c
410 0.11 oH
302 0.08 cg
194 0.05 e
173 0.05 cccH
145 0.04 oe
134 0.04 H
107 0.03 ccccH
103 0.03 oeH
65 0.02 r
51 0.01 ciH
40 0.01 P
38 0.01 eH
38 0.01 Ae
34 0.01 oP
29 0.01 ci
21 0.01 cH
21 0.01 AP
----- ---- ----
3823 1.00 TOT
It looks like "P" is equivalent to "H"...
Recomputing prefix/suffix table:
/bin/rm -f .title
/bin/rm -f .table
/bin/touch .table
set noglob
set ofmt = "0"
set npat = 1
foreach pat ( \
'AH' 'c' 'oH' 'cg' \
'e' 'cccH' 'oe' 'H' \
'ccccH' 'oeH' 'r' 'ciH' \
'P' 'eH' 'Ae' 'oP' \
'ci' 'cH' 'AP' \
)
/n/gnu/bin/printf " %7s" "${pat}" >> .title
/bin/cat bio-j-huc-gut.wds \
| /n/gnu/bin/sed -e 's/^/_/g' -e 's/$/_/g' \
| /n/gnu/bin/egrep "_${pat}[co][^HPA]*_" \
| /n/gnu/bin/sed -e "s/_${pat}//g" -e '/../s/_$//g' \
| /n/gnu/bin/sort | uniq -c \
| /n/gnu/bin/expand \
> .suff.frq
/n/gnu/bin/join -a 1 -a 2 -1 1 -2 2 -o"${ofmt},2.1" -e 0 .table .suff.frq > .tmp
/bin/mv .tmp .table
@ npat = ${npat} + 1
set ofmt = "${ofmt},1.${npat}"
end
unset noglob
/n/gnu/bin/printf "\n" >> .title
cat .table \
| /n/gnu/bin/gawk '/./ { s=0; for(i=2;i<=NF;i++) s+=$(i); print s, $0 }' \
| sort -nr \
> .tbsort
cat .title .tbsort \
| format-suffix-table
TOTAL AH oH c H oeH ciH cH eH cccH ccccH cg P e oe Ae r oP ci AP
----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
SUFFIX \ TOT 4104 1038 446 998 148 105 53 21 43 173 109 338 63 212 150 38 73 40 34 22
------------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
ci 257 79 28 1 2 10 1 1 2 31 26 36 0 6 22 7 2 2 0 1
cci 247 43 22 14 2 4 2 1 1 90 68 0 0 0 0 0 0 0 0 0
ccci 333 87 35 139 5 19 10 6 3 11 4 2 0 5 4 2 1 0 0 0
cccci 171 12 13 61 10 3 0 0 1 1 0 3 3 20 19 9 5 4 5 2
ccccci 26 1 1 1 1 1 1 0 0 0 0 3 0 6 4 0 1 2 4 0
cccccci 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
cgci 21 1 0 0 0 0 0 0 0 0 0 0 0 8 9 1 0 0 1 1
ccgci 392 201 85 21 28 20 12 3 8 10 2 2 0 0 0 0 0 0 0 0
cccgci 736 191 57 387 16 15 12 4 7 15 5 5 3 7 6 1 1 2 0 2
ccccgci 325 19 10 60 18 2 1 0 2 0 0 27 17 73 38 7 10 18 12 11
cccccgci 18 2 0 0 0 0 0 0 0 0 0 2 0 6 1 3 2 0 2 0
cim 283 94 41 30 7 7 4 0 6 2 0 72 0 2 3 2 13 0 0 0
ccccim 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cie 254 116 40 14 10 5 3 1 0 1 0 50 0 3 2 2 6 1 0 0
ccie 12 1 0 7 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0
cccie 10 0 1 7 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
ccccie 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
cir 184 50 36 11 8 7 2 1 4 3 0 51 1 2 1 1 3 2 1 0
ccir 11 1 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccir 12 0 1 8 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
ccccir 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
cin 98 54 16 0 2 5 2 0 2 0 0 12 0 0 3 1 1 0 0 0
ccin 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
cif 18 4 0 0 1 1 0 0 0 2 0 6 0 1 0 0 3 0 0 0
ccif 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oe 124 21 10 25 6 1 0 0 1 0 0 17 8 16 7 1 9 1 0 1
coe 35 1 6 23 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
ccoe 45 1 1 33 4 0 0 0 0 0 0 3 2 0 0 0 0 0 0 1
cccoe 25 0 0 4 3 0 1 0 0 0 0 4 4 3 3 1 0 0 1 1
or 51 4 2 10 4 0 0 0 0 0 0 3 0 10 13 0 3 1 0 1
cor 7 4 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
ccor 25 0 1 17 0 0 0 0 0 0 0 2 2 3 0 0 0 0 0 0
cccor 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
ccccor 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
om 10 1 0 5 0 1 0 0 0 0 0 0 1 0 0 0 2 0 0 0
cccg 18 5 3 7 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
ccccg 15 1 0 1 0 0 0 0 0 1 0 0 0 5 3 0 2 1 1 0
cieci 21 7 4 1 1 0 0 0 0 0 0 6 0 0 0 0 1 1 0 0
cccgcie 13 2 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
ccc 13 1 0 10 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0
ccgcir 11 4 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccgcim 9 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oeci 8 0 0 1 0 0 0 0 0 0 0 0 0 4 0 0 1 2 0 0
circi 8 1 0 0 1 0 0 0 0 0 0 5 0 0 0 0 1 0 0 0
ciecgci 8 3 2 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0
ccccgcir 8 0 0 1 1 0 0 0 0 0 0 0 4 1 0 0 0 0 1 0
cccgcir 7 0 0 4 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0
oeccccgci 6 1 0 2 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0
ccg 6 3 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
ce 6 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgcie 6 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oecgci 5 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
oecccci 5 0 0 3 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0
o 5 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0
coecgci 5 0 1 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
cieor 5 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
cicgci 5 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccc 5 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
c 5 0 0 1 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0
cieoe 4 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
cieccccgci 4 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0
ccccc 4 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0
oecccgci 3 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
ciecccgci 3 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
cic 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccieci 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
cccgoe 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccccgcie 3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0
cc 3 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
oroe 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0
orcim 2 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
oeor 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
oeccci 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
coeci 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
circie 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ciie 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
cieo 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
cgoe 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
cgcim 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0
ccgcim 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgcif 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cce 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
cccgcif 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccgccci 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
ccccoe 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ccccif 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
oroeccccgci 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
orcin 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
orcie 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
orccci 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oeof 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
oeoe 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oecircir 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
oecim 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
oeciecccgci 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
oecgcie 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oecgccccgci 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
oecccoe 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oecccgcie 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
oecccg 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
oeccccg 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
oecccccgci 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ocgcir 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ocgcie 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
ocg 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
occci 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
occccgci 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
coeor 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
coeo 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
coecccci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cocgcim 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
co 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
cirorci 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
cirof 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ciroeof 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
circif 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
circgci 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
circccci 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
circccccgcie 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
cioc 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cino 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cimci 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
cifo 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
ciecirci 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ciecircg 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ciecir 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ciecim 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ciecie 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ciecgcgci 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ciecce 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
cieccci 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ciecccci 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cieccccg 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ciec 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cicccgci 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cgcircie 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
cgcircccci 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
cgcir 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
cgcieor 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
cgcieccor 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
cgcie 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cg 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
cer 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cecgcim 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cecgci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cec 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccoeoe 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccoeo 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccoecicg 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ccoecgci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccoecccgci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccoecccci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccocgci 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cco 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
cciror 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccirci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccieoeci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccieci 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
ccgor 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgoe 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgcioe 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgcin 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgcieor 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgcci 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
ccgccgci 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgccci 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccgccccgci 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccoecgci 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
ccciroe 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
cccieor 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccgor 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccgciecgci 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
cccciecgci 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
cccciecg 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
ccccic 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ccccgcirci 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
cccccgcie 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
cccccg 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
Redefined split-prefix-suffix with only the significant suffixes:
SUFFS = "(ccc3ci|cc3ci|ccci|cccc3ci|cim|ci|cix|cci|ci2|cccci|ox|cin|o2|ccox|cox|ccccci|cccox|cco2)$"