LOCUS       NC_011090            1374474 bp    DNA     linear   CON 22-DEC-2015
DEFINITION  Drosophila yakuba strain Tai18E2 chromosome 4, whole genome shotgun
            sequence.
ACCESSION   NC_011090
VERSION     NC_011090.1
DBLINK      BioProject: PRJNA29999
            BioSample: SAMN02952910
            Assembly: GCF_000005975.2
KEYWORDS    WGS; RefSeq.
SOURCE      Drosophila yakuba
  ORGANISM  Drosophila yakuba
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 1374474)
  AUTHORS   Clark,A.G., Eisen,M.B., et al.
  CONSRTM   Drosophila 12 Genomes Consortium
  TITLE     Evolution of genes and genomes on the Drosophila phylogeny
  JOURNAL   Nature 450 (7167), 203-218 (2007)
   PUBMED   17994087
REFERENCE   2  (bases 1 to 1374474)
  AUTHORS   Ranz,J.M., Maurin,D., Chan,Y.S., von Grotthuss,M., Hillier,L.W.,
            Roote,J., Ashburner,M. and Bergman,C.M.
  TITLE     Principles of genome evolution in the Drosophila melanogaster
            species group
  JOURNAL   PLoS Biol. 5 (6), E152 (2007)
   PUBMED   17550304
REFERENCE   3  (bases 1 to 1374474)
  CONSRTM   The Drosophila yakuba Sequencing Consortium
  TITLE     The Genome of Drosophila yakuba
  JOURNAL   Unpublished
REFERENCE   4  (bases 1 to 1374474)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1374474)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2015) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA
REFERENCE   6  (bases 1 to 1374474)
  CONSRTM   The Drosophila yakuba Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2006) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park Parkway, St. Louis,
            MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to CM000161.
            This is the CAF1 assembly of the Drosophila yakuba genome. It has
            9.1x coverage. The D. yakuba chromosomes were created by using the
            Drosophila melanogaster genome as a reference, as described in
            PMID: 17994087.  However, inversions were introduced to remain
            consistent with the D. yakuba assembly scaffolds. Inversions were
            only introduced between contigs and not within contigs. The
            resulting assembly is consistent with polytene chromosome banding
            data. Subsequently, major breakpoints in the D. yakuba chromosomal
            assembly relative to D. melanogaster were all validated (PMID:
            17550304).
            This line is derived from a single inseminated female collected by
            D. Lachaise in 1983 from the wild population in the Tai rainforest,
            on the border between Liberia and Ivory Coast.  The isofemale line,
            Tai18 came to J. Coyne's laboratory where it was inbred (sib-pair
            mating) for 7 generations in 2001 yielding Tai182E.  A. Llopart
            established the homokaryotypic (2Rn) subline, Tai18E2 from a pair
            mating.
            Annotation was updated in November 2015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 1.04
            Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##