# Last edited on 2008-06-10 20:38:56 by stolfi

PROG := dnasample

PROGDIR := ..

include ${STOLFIHOME}/programs/c/GENERIC-PROGS-TEST.make

RUNS := \
  NC_004545:000000:0100:4096:5000 \
  NC_001489:000000:0074:0100:0100 \
  NC_001489:000200:0074:0100:0050

.PHONY:: run-all run-single

all: clean run-all

run-all:
	for run in ${RUNS}; do make RUN=$$run run-single ; done

clean::
	-rm -f */*.smp */*.pot */*.eps

######################################################################
# Sub-make - caller must define ${RUN}

RUN := RUN.IS.UNDEFINED
ifneq "/${RUN}" "/RUN.IS.UNDEFINED"

FIELDS := ${subst :, ,${RUN}}
SNAME := ${word 1,${FIELDS}}
SKIP  := ${word 2,${FIELDS}}
NSEQS := ${word 3,${FIELDS}}
SZSEQ := ${word 4,${FIELDS}}
STEP  := ${word 5,${FIELDS}}

FILENAME := ${SNAME}/${SKIP}-${NSEQS}-${SZSEQ}-${STEP}

run-single: ${FILENAME}.smp

DATADIR := ${STOLFIHOME}/programs/c/DNA/small/DATA

${FILENAME}.smp: ${DATADIR}/${SNAME}.fna ${PROGDIR}/${PROG}
	mkdir -p ${SNAME}
	cat ${DATADIR}/${SNAME}.fna \
          | ${PROGDIR}/${PROG} ${SKIP} ${NSEQS} ${SZSEQ} ${STEP} \
          > ${FILENAME}.smp

endif
# end ${RUN}
######################################################################