=== AB005990 === locus = AB005990 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="12" ignored annotation: /map="12q13.3" CDS = 1..195,845..1035,1543..1745,1831..2031,2116..2288,2492..2664,2866..2944,3234..3431,3787..3900 ignored annotation: /codon_start=1 ignored annotation: /product="25-hydroxyvitamin D3 1alpha-hydroxylase" ignored annotation: /db_xref="PID:d1023525" ignored annotation: /db_xref="PID:g2516246" translation = MTQTLKYASRVFHRVRWAPELGASLGYREYHSARRSLADIPGPSTPSFLAELFCKGGLSRLHELQVQGAAHFGPVWLASFGTVRTVYVAAPALVEELLRQEGPRPERCSFSPWTEHRRCRQRACGLLTAEGEEWQRLRSLLAPLLLRPQAAARYAGTLNNVVCDLVRRLRRQRGRGTGPPALVRDVAGEFYKFGLEGIAAVLLGSRLGCLEAQVPPDTETFIRAVGSVFVSTLLTMAMPHWLRHLVPGPWGRLCRDWDQMFAFAQRHVERREAEAAMRNGGQPEKDLESGAHLTHFLFREELPAQSILGNVTELLLAGVDTVSNTLSWALYELSRHPEVQTALHSEITAALSPGSSAYPSATVLSQLPLLKAVVKEVLRLYPVVPGNSRVPDKDIHVGDYIIPKNTLVTLCHYATSRDPAQFPEPNSFRPARWLGEGPTPHPFASLPFGFGKRSCMGRRLAELELQMALAQILTHFEVQPEPGAAPVRPKTRTVLVPERSINLQFLDR ignored annotation: BASE COUNT 1017 a 1353 c 1250 g 1086 t // ** orig/raws/AB005990:126: missing "mRNA" entry === AB009589 === locus = AB009589 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="9" ignored annotation: /clone_lib="lambda FIX II STRATAGENE" ignored annotation: /map="9q21" ignored annotation: promoter 1..1815 ignored annotation: 5'UTR join(1816..1892,8524..8539) ignored annotation: exon 1816..1892 ignored annotation: /number=1 mRNA = 1816..1892,8524..9479,10624..11846 ignored annotation: intron 1893..8523 ignored annotation: /number=1 ignored annotation: exon 8524..9479 ignored annotation: /number=2 ignored annotation: gene 8540..10949 ignored annotation: /gene="osteomodulin" CDS = 8540..9479,10624..10949 ignored annotation: /gene="osteomodulin" ignored annotation: /codon_start=1 ignored annotation: /product="Osteomodulin" ignored annotation: /db_xref="PID:d1024887" ignored annotation: /db_xref="PID:g2696502" translation = MGFLSPIYVIFFFFGVKVHCQYETYQWDEDYDQEPDDDYQTGFPFRQNVDYGVPFHQYTLGCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKLPNLLQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLESMPPGLPSSLMYLSLENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPYNIFNLPNIVELSVGHNKLKQAFYIPRNLEHLYLQNNEIEKMNLTVMCPSIDPLHYHHLTYIRVDQNKLKEPISSYIFFCFPHIHTIYYGEQRSTNGQTIQLKTQVFRRFPDDDDESEDHDDPDNAHESPEQEGAEGHFDLHYYENQE ignored annotation: intron 9480..10623 ignored annotation: /gene="osteomodulin" ignored annotation: /number=2 ignored annotation: exon 10624..11846 ignored annotation: /number=3 ignored annotation: 3'UTR 10950..11846 ignored annotation: polyA_signal 11830..11835 ignored annotation: polyA_site 11847 ignored annotation: BASE COUNT 4337 a 2171 c 2288 g 3618 t mRNA range 1816..1892 mRNA range 8524..9479 mRNA range 10624..11846 CDS range 8540..9479 CDS range 10624..10949 seq_ini = 1 seq_fin = 12414 i = 10949 last codon bas = aa[tag]caa last codon lab = EF[DEF]YYY === AC002132 === locus = AC002132 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="19" ignored annotation: /map="19q13.1 between D19S208 and CAPNS" ignored annotation: /map="oriented centromere to telomere" ignored annotation: /map="overlaps with CH19R30879 to the left and CH19F16632 ignored annotation: to the right" ignored annotation: /clone="F24108" ignored annotation: /cell_line="UV5HL9-5B" ignored annotation: /clone_lib="LL19NC02 F2 chromosome 19-specific cosmid ignored annotation: library" ignored annotation: /cell_type="fibroblast" ignored annotation: /note="cosmid library constructed at LLNL from flow-sorted ignored annotation: chromosomes from hybrid UV5HL9-5B, which carries ignored annotation: chromosome 19 as its only human chromosome." ignored annotation: repeat_region 14..386 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 827..1081 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(1320..1587) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(3975..4184) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 5730..5853 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 5853..6220 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 6259..6484 ignored annotation: /rpt_family="ALU" mRNA = 6653..6718,6877..7245,10818..11114,11411..11668,13712..13972,21138..21425,21811..21907,23182..23281,24554..25068 ignored annotation: /gene="MAG" ignored annotation: /note="BLASTN similarity to human ESTs: R17484, F11360, ignored annotation: F09020, R42831, R45975, H23809, R89057, F04235, H23810." ignored annotation: /product="MAG" ignored annotation: gene 6653..25068 ignored annotation: /note="myelin-associated glycoprotein" ignored annotation: /gene="MAG" ignored annotation: /map="19q13.1" CDS = 6673..6718,6877..7245,10818..11114,11411..11668,13712..13972,21138..21425,21811..21907,23182..23281,24554..24718 ignored annotation: /gene="MAG" ignored annotation: /note="myelin-associated glycoprotein precursor" ignored annotation: /codon_start=1 ignored annotation: /product="MAG" ignored annotation: /db_xref="PID:g2160194" translation = MIFLTALPLFWIMISASRGGHWGAWMPSSISAFEGTCVSIPCRFDFPDELRPAVVHGVWYFNSPYPKNYPPVVFKSRTQVVHESFQGRSRLLGDLGLRNCTLLLSNVSPELGGKYYFRGDLGGYNQYTFSEHSVLDIVNTPNIVVPPEVVAGTEVEVSCMVPDNCPELRPELSWLGHEGLGEPAVLGRLREDEGTWVQVSLLHFVPTREANGHRLGCQASFPNTTLQFEGYASMDVKYPPVIVEMNSSVEAIEGSHVSLLCGADSNPPPLLTWMRDGTVLREAVAESLLLELEEVTPAEDGVYACLAENAYGQDNRTVGLSVMYAPWKPTVNGTMVAVEGETVSILCSTQSNPDPILTIFKEKQILSTVIYESELQLELPAVSPEDDGEYWCVAENQYGQRATAFNLSVEFAPVLLLESHCAAARDTVQCLCVVKSNPEPSVAFELPSRNVTVNESEREFVYSERSGLVLTSILTLRGQAQAPPRVICTARNLYGAKSLELPFQGAHRLMWAKIGPVGAVVAFAILIAIVCYITQTRRKKNVTESPSFSAGDNPPVLFSSDFRISGAPEKYESERRLGSERRLLGLRGEPPELDLSYSHSDLGKRPTKDSYTLTEELAEYAEIRVK ignored annotation: repeat_region 7563..7681 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 8011..10351 ignored annotation: /rpt_family="VNTR" ignored annotation: repeat_region complement(12004..12424) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(12696..13119) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(13410..13478) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(14181..14481) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(14597..14786) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(15813..16094) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 16941..17205 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(17706..18001) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 18794..18953 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 19739..19847 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 20080..20252 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(20701..20843) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 22302..22702 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 24031..24280 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(25836..25999) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 26167..26344 ignored annotation: /rpt_family="MER5" ignored annotation: repeat_region complement(26167..26344) ignored annotation: /rpt_family="MER5" ignored annotation: repeat_region complement(26601..26881) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 27235..27712 ignored annotation: /rpt_family="MER1" ignored annotation: repeat_region 28366..28646 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(29327..29903) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 30774..31305 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 32468..32716 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 33080..33362 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(33585..33713) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 33731..33853 ignored annotation: /rpt_family="LTR10" ignored annotation: repeat_region complement(34305..34513) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(35009..35266) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 35752..36030 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(36032..36192) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(36308..36379) ignored annotation: /note="BLASTX similarity to (1139..1162); match: 0.45, ignored annotation: score: 8.5e-14; database searched: nr; hypothetical ignored annotation: protein (L1H 3' region) - human" ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(36432..36587) ignored annotation: /note="BLASTX similarity to (1066..1117);match: 0.4, ignored annotation: score: 8.5e-14; database searched: nr; hypothetical ignored annotation: protein (L1H 3' region) - human" ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(36896..37047) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(38803..39045) ignored annotation: /rpt_family="ALU" ignored annotation: misc_feature complement(39066..39239) ignored annotation: /standard_name="Xgrail prediction" ignored annotation: /note="Xgrail 1.3c prediction, quality= excellent, score= ignored annotation: 79." ignored annotation: BASE COUNT 9654 a 10413 c 9983 g 9286 t mRNA range 6653..6718 mRNA range 6877..7245 mRNA range 10818..11114 mRNA range 11411..11668 mRNA range 13712..13972 mRNA range 21138..21425 mRNA range 21811..21907 mRNA range 23182..23281 mRNA range 24554..25068 CDS range 6673..6718 CDS range 6877..7245 CDS range 10818..11114 CDS range 11411..11668 CDS range 13712..13972 CDS range 21138..21425 CDS range 21811..21907 CDS range 23182..23281 CDS range 24554..24718 seq_ini = 1 seq_fin = 39336 i = 24718 last codon bas = ag[tga]agg last codon lab = EF[DEF]YYY === AC002366 === locus = AC002366 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="BAC CT-285I15, RPTCI1-27C22, U35B5" ignored annotation: /chromosome="X" ignored annotation: /map="Xp22" ignored annotation: repeat_region 35..127 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(1087..1502) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(5292..5579) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 5302..5553 ignored annotation: /rpt_family="SVA" ignored annotation: repeat_region complement(6009..6063) ignored annotation: /rpt_family="L1MC2" ignored annotation: repeat_region complement(7092..7382) ignored annotation: /rpt_family="L1MA5" ignored annotation: repeat_region 7423..7721 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 9771..10072 ignored annotation: /rpt_family="L1MC2" ignored annotation: repeat_region complement(10072..11146) ignored annotation: /rpt_family="THR" ignored annotation: repeat_region complement(11156..11528) ignored annotation: /rpt_family="THE1b" ignored annotation: repeat_region complement(12944..13151) ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region 13862..14010 ignored annotation: /rpt_family="MLT1f" ignored annotation: repeat_region 14063..14352 ignored annotation: /rpt_family="MER42a" ignored annotation: repeat_region 15847..16170 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(18743..19117) ignored annotation: /rpt_family="MER7" ignored annotation: repeat_region 23507..23614 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 23615..24425 ignored annotation: /rpt_family="L1PA11" ignored annotation: repeat_region complement(25475..25968) ignored annotation: /rpt_family="MLT1d" ignored annotation: STS 27234..27683 ignored annotation: /note="similar to EST with GenBank Accession Number ignored annotation: H48827" ignored annotation: /db_xref="dbSTS:G28372" ignored annotation: repeat_region complement(28186..28366) ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region 28715..28995 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(30217..30408) ignored annotation: /rpt_family="L1MA5" ignored annotation: repeat_region 31199..31364 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(33939..34460) ignored annotation: /rpt_family="L1MA2" ignored annotation: repeat_region 34952..35384 ignored annotation: /rpt_family="MLT1d" ignored annotation: repeat_region 36035..36126 ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region 36850..37035 ignored annotation: /rpt_family="MER20" ignored annotation: STS 38042..38250 ignored annotation: /db_xref="dbSTS:L47508" ignored annotation: repeat_region 38122..38510 ignored annotation: /rpt_family="MSTa" ignored annotation: repeat_region 38797..40103 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(42465..42539) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 47139..47335 ignored annotation: /rpt_family="MER3" ignored annotation: repeat_region complement(48993..49166) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(49718..49918) ignored annotation: /rpt_family="L1PA11" ignored annotation: repeat_region complement(51943..52505) ignored annotation: /rpt_family="L1MB3" ignored annotation: repeat_region 53226..53677 ignored annotation: /rpt_family="MLT1d" ignored annotation: repeat_region complement(54846..54966) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 55040..55226 ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region 55691..55837 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 56051..56486 ignored annotation: /rpt_family="L1ME3a" ignored annotation: repeat_region 58557..59030 ignored annotation: /rpt_family="MLT1d" ignored annotation: repeat_region complement(59270..59428) ignored annotation: /rpt_family="MER5" ignored annotation: repeat_region complement(59847..60030) ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region complement(61290..61384) ignored annotation: /rpt_family="L1PB1" ignored annotation: repeat_region 61683..61811 ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region 61907..62113 ignored annotation: /rpt_family="L1MB7" ignored annotation: repeat_region complement(63588..63969) ignored annotation: /rpt_family="L1MA10" ignored annotation: repeat_region 64800..65073 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(67157..67209) ignored annotation: /rpt_family="MIR" ignored annotation: gene 67637..75845 ignored annotation: /gene="HAMELX" ignored annotation: promoter 67637..68496 ignored annotation: /gene="HAMELX" ignored annotation: /note="similar to bovine amelogenin promoter" mRNA = 68495..68552,69861..69926,71863..71910,73320..73361,73632..74057,75691..75845 ignored annotation: /gene="HAMELX" ignored annotation: /product="amelogenin" CDS = 69873..69926,71863..71910,73320..73361,73632..74057,75691..75696 ignored annotation: /gene="HAMELX" ignored annotation: /note="similar to amelogenin encoded by GenBank Accession ignored annotation: Number M86932" ignored annotation: /codon_start=1 ignored annotation: /product="amelogenin" ignored annotation: /db_xref="PID:g2739350" translation = MGTWILFACLLGAAFAMPLPPHPGHPGYINFSYEVLTPLKWYQSIRPPYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVIPQQPMMPVPGQHSMTPIQHHQPNLPPPAQQPYQPQPVQPQPHQPMQPQPPVHPMQPLPPQPPLPPMFPMQPLPPMLPDLTLEAWPSTDKTKREEVD ignored annotation: repeat_region complement(77161..77331) ignored annotation: /rpt_family="MER3" ignored annotation: repeat_region complement(79184..79473) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(79881..80169) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 80196..80253 ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region 80384..80459 ignored annotation: /rpt_family="L1PB3" ignored annotation: repeat_region complement(81544..81633) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 84789..84957 ignored annotation: /rpt_family="L1MA2" ignored annotation: repeat_region 84978..85252 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 85294..85692 ignored annotation: /rpt_family="L1MB3" ignored annotation: repeat_region complement(88147..88282) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(89652..89741) ignored annotation: /rpt_family="L1PA11" ignored annotation: repeat_region 89745..90029 ignored annotation: /rpt_family="L1PA11" ignored annotation: repeat_region complement(90283..90596) ignored annotation: /rpt_family="MER1A" ignored annotation: repeat_region 90849..91266 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(91514..92000) ignored annotation: /note="L1MA8" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(92292..92491) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(93351..93401) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 93694..93772 ignored annotation: /note="MADE1" ignored annotation: /rpt_family="DNA/Mariner" ignored annotation: repeat_region complement(94209..94346) ignored annotation: /note="(TAGA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(94400..94585) ignored annotation: /note="MER5A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 94756..94794 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 95851..96003 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(96505..96535) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 96897..96930 ignored annotation: /note="L1MA3" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(97232..97438) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(97447..97704) ignored annotation: /note="AluSq" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 98322..98665 ignored annotation: /note="HSMAR2" ignored annotation: /rpt_family="DNA/Mariner" ignored annotation: repeat_region 98666..98969 ignored annotation: /note="AluSq" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 98976..99906 ignored annotation: /note="HSMAR2" ignored annotation: /rpt_family="DNA/Mariner" ignored annotation: repeat_region complement(99946..100229) ignored annotation: /note="AluYb8" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region complement(100724..100765) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 100856..101071 ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(101209..101509) ignored annotation: /note="AluSp" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 101946..101985 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 103509..103601 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 104700..104734 ignored annotation: /note="MER7B" ignored annotation: /rpt_family="DNA/MER2_type" ignored annotation: repeat_region 104827..105087 ignored annotation: /note="MER7A" ignored annotation: /rpt_family="DNA/MER2_type" ignored annotation: repeat_region 105120..105163 ignored annotation: /note="(CAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 105231..105514 ignored annotation: /note="L1MA7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(105660..105725) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(105675..105843) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 105962..105989 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(106006..106641) ignored annotation: /note="MER39b_j" ignored annotation: /rpt_family="Other/MER21_gro" ignored annotation: repeat_region complement(107669..108074) ignored annotation: /note="L1MD2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 108257..108628 ignored annotation: /note="THE1C" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region complement(110316..110743) ignored annotation: /note="L1PA7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 111211..111254 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 112256..112370 ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(112841..113286) ignored annotation: /note="MSTB" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region 113753..114088 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 114139..114262 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 114657..114761 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 114762..115193 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 115380..115525 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 115531..115825 ignored annotation: /note="AluY" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 115945..116029 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 116066..116280 ignored annotation: /note="L1ME1" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 118654..118839 ignored annotation: /note="MER5A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 119090..119110 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(119211..119412) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(119427..119457) ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 119474..119781 ignored annotation: /note="AluSq" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 119782..119814 ignored annotation: /note="(GAAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 119823..119924 ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(121052..121181) ignored annotation: /note="FLAM_A" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region complement(121281..121499) ignored annotation: /note="MER58A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 121541..121811 ignored annotation: /note="AluJb" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 121812..121889 ignored annotation: /note="(GAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 122006..122041 ignored annotation: /note="(CAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(123732..123994) ignored annotation: /note="AluJo" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 124412..124618 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 124979..125108 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 125190..125236 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 126132..126184 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(126340..126385) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(127902..128024) ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(128634..128697) ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 129269..129348 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(129351..129412) ignored annotation: /note="(GA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 129413..129442 ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 129443..129515 ignored annotation: /note="(CAT)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(130012..130126) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 131259..131515 ignored annotation: /note="L1PA8" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 131721..131761 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 131814..131964 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(132968..133512) ignored annotation: /note="L1MB7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(133517..133561) ignored annotation: /note="(GAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(133562..133865) ignored annotation: /note="AluSp" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 134686..137741 ignored annotation: /note="L1PA2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 138837..139447 ignored annotation: /note="L1PA11" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 139470..139531 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 140816..140909 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(140934..141272) ignored annotation: /note="MLT1A2" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region complement(141412..141452) ignored annotation: /note="(TGAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(141979..142359) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 143821..143907 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(144248..144282) ignored annotation: /note="(CAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(144454..144491) ignored annotation: /note="MER5A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 144545..144788 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 145978..146008 ignored annotation: /note="(CAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(146335..146533) ignored annotation: /note="MER58A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 147580..147875 ignored annotation: /note="AluY" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 148121..148163 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 148164..148218 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(149495..149552) ignored annotation: /note="MER3" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 149919..150186 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 151054..151196 ignored annotation: /note="(GAAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 151265..151759 ignored annotation: /note="MLT1D" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region 152354..152665 ignored annotation: /note="L1MB8" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(153308..153440) ignored annotation: /note="L1MB6" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(155604..155789) ignored annotation: /note="MER5A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(155802..156000) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(157114..157210) ignored annotation: /note="(CAT)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 157404..157474 ignored annotation: /note="(TAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 159283..159510 ignored annotation: /note="L1MC4" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 159739..159908 ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(159919..160024) ignored annotation: /note="MER81" ignored annotation: /rpt_family="DNA/Other" ignored annotation: repeat_region 161837..161910 ignored annotation: /note="(GAAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 162284..162452 ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(162646..163856) ignored annotation: /note="L1PA2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 164098..164309 ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(165085..165455) ignored annotation: /note="L1PA2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 165457..166551 ignored annotation: /note="L1PA2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 166553..166585 ignored annotation: /note="(GAAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 166761..166824 ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(166859..166955) ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(167005..167050) ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 167310..167420 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(167698..167840) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 168162..168340 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(168456..168500) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(168673..168889) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(168897..168942) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 169301..169635 ignored annotation: /note="L1MB8" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 169951..170112 ignored annotation: /note="MER45" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 170492..170691 ignored annotation: /note="MER63B" ignored annotation: /rpt_family="DNA/MER1_type?" ignored annotation: repeat_region 171023..171056 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(171600..171653) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 172019..172056 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 172460..172571 ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 172682..172989 ignored annotation: /note="AluJb" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 173181..173345 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 173347..173371 ignored annotation: /note="POLY_A" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 173732..173789 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 174439..174461 ignored annotation: /note="POLY_A" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 174645..174700 ignored annotation: /note="MADE1" ignored annotation: /rpt_family="DNA/Mariner" ignored annotation: repeat_region 174701..175324 ignored annotation: /note="L1MB7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(176489..176726) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(177175..177245) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 178413..178710 ignored annotation: /note="MER33" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 179791..179811 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 180855..180995 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(181002..181282) ignored annotation: /note="AluJb" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 181556..181610 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(182057..182872) ignored annotation: /note="L1MB8" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 183976..184044 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 184076..184263 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 184844..184910 ignored annotation: /note="L1MB5" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 184911..185029 ignored annotation: /note="FLAM_A" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 185037..185734 ignored annotation: /note="L1MB5" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 186268..186397 ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(186433..186556) ignored annotation: /note="L1MB6" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(186886..187092) ignored annotation: /note="L1MB6" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 187200..187226 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 189229..189567 ignored annotation: /note="MER58B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 189973..190247 ignored annotation: /note="L1MA7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 190946..191077 ignored annotation: /note="MLT1F" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region 192129..192209 ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 192375..192772 ignored annotation: /note="L1MD2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 192823..193069 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(193614..193688) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 195443..195468 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(196367..196545) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(197054..197637) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(198716..198839) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(199820..199894) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 200112..200161 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 200804..200851 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 201434..201459 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(201796..201833) ignored annotation: /note="(GAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 201888..202005 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 202867..202959 ignored annotation: /note="(GGA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 203990..204417 ignored annotation: /note="L1MB7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 204438..204501 ignored annotation: /note="MER3" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 204587..204622 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(205834..206018) ignored annotation: /note="L1PB3" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(206019..206060) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(206227..206267) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(206985..207207) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(207244..207624) ignored annotation: /note="L1ME3A" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 209092..209307 ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 210089..210314 ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 210535..210631 ignored annotation: /note="MER5A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(210735..210809) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 211595..212137 ignored annotation: /note="L1MB7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 212143..212201 ignored annotation: /note="(GGAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(212542..212603) ignored annotation: /note="LTR16B" ignored annotation: /rpt_family="LTR/Retroviral" ignored annotation: repeat_region 213561..213617 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 214210..214240 ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(214328..214585) ignored annotation: /note="MER58B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(216998..217060) ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(218059..218730) ignored annotation: /note="L1ME3" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 218733..219031 ignored annotation: /note="AluY" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region complement(219054..219171) ignored annotation: /note="L1ME3" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 219176..219378 ignored annotation: /note="MER58A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 220729..220936 ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(222501..222718) ignored annotation: /note="MER58A" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(223728..223814) ignored annotation: /note="MER5B" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(225288..225327) ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(225788..225994) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 226806..226955 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(227160..227209) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(227230..227531) ignored annotation: /note="AluSx" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 228279..228418 ignored annotation: /note="(TA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(229036..229343) ignored annotation: /note="AluY" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 230871..230949 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 231020..231411 ignored annotation: /note="L1" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 233616..233750 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(233770..234163) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(234266..234517) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region 234597..234742 ignored annotation: /note="L1ME1" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 235181..235640 ignored annotation: /note="MLT1E" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region complement(235673..235714) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 235821..235958 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(236317..236477) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 236560..236649 ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(238422..238724) ignored annotation: /note="AluJo" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region complement(239338..239363) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region complement(240362..240412) ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: repeat_region complement(240452..240669) ignored annotation: /note="MER33" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(240812..240939) ignored annotation: /note="MER3" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(241009..241078) ignored annotation: /note="(GGA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region complement(241589..241883) ignored annotation: /note="AluJo" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 242242..242471 ignored annotation: /note="AluJb" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 242568..242781 ignored annotation: /note="L1ME3A" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 242787..243082 ignored annotation: /note="AluSx" ignored annotation: /rpt_family="SINE/Alu" ignored annotation: repeat_region 243083..243111 ignored annotation: /note="(TAAA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 243112..243350 ignored annotation: /note="L1ME3A" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 243891..244250 ignored annotation: /note="MLT1A1" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region complement(245838..245997) ignored annotation: /note="MER45" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 246164..246279 ignored annotation: /note="L1MD3" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(246467..246545) ignored annotation: /note="AT_rich" ignored annotation: /rpt_family="Low_complexity" ignored annotation: repeat_region 246646..246759 ignored annotation: /note="L1" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(247016..247140) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region complement(247188..247398) ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(247401..247652) ignored annotation: /note="LINE2" ignored annotation: /rpt_family="LINE/L2" ignored annotation: repeat_region 248395..248859 ignored annotation: /note="MLT1C" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region 249743..250196 ignored annotation: /note="MSTB" ignored annotation: /rpt_family="LTR/MaLR" ignored annotation: repeat_region 250645..250695 ignored annotation: /note="(CA)n" ignored annotation: /rpt_family="Simple_repeat" ignored annotation: repeat_region 251103..252208 ignored annotation: /note="L1ME2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 252248..253085 ignored annotation: /note="L1ME2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 253104..253636 ignored annotation: /note="L1ME2" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region 253638..253670 ignored annotation: /note="MER3" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region complement(254623..254791) ignored annotation: /note="MER45" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 255210..255714 ignored annotation: /note="L1MB7" ignored annotation: /rpt_family="LINE/L1" ignored annotation: repeat_region complement(256688..256868) ignored annotation: /note="MER53" ignored annotation: /rpt_family="DNA/Other" ignored annotation: repeat_region 257125..257339 ignored annotation: /note="MER20" ignored annotation: /rpt_family="DNA/MER1_type" ignored annotation: repeat_region 259043..259142 ignored annotation: /note="MIR" ignored annotation: /rpt_family="SINE/MIR" ignored annotation: BASE COUNT 81699 a 51421 c 49221 g 76861 t mRNA range 68495..68552 mRNA range 69861..69926 mRNA range 71863..71910 mRNA range 73320..73361 mRNA range 73632..74057 mRNA range 75691..75845 CDS range 69873..69926 CDS range 71863..71910 CDS range 73320..73361 CDS range 73632..74057 CDS range 75691..75696 seq_ini = 1 seq_fin = 259202 i = 75696 last codon bas = at[taa]aag last codon lab = EF[DEF]YYY === AC002482 === locus = AC002482 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="RG208O03" ignored annotation: /clone_lib="CITB-HS-A" ignored annotation: repeat_region 4242..5282 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(6039..6639) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 6134..6552 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(7185..7411) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(7559..7809) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(7870..7968) ignored annotation: /rpt_family="L1" ignored annotation: misc_feature 8968..9080 ignored annotation: /note="match to human EST AA426245 (NID:g2107586) ignored annotation: zv83e03.r1" ignored annotation: misc_feature 8968..9080 ignored annotation: /note="match to human EST AA403048 (NID:g2055610) ignored annotation: zv63d09.r1" ignored annotation: misc_feature 8987..9080 ignored annotation: /note="match to human EST T64262 (NID:g668127) yc09a06.r1" ignored annotation: gene 9005..10609 ignored annotation: /gene="MCP-4" CDS = 9005..9080,9953..10067,10504..10609 ignored annotation: /gene="MCP-4" ignored annotation: /note="RG208O03.1; match to mRNA U46767 (NID:g1732122) and ignored annotation: protein U46767 (PID:g1732123)" ignored annotation: /codon_start=1 ignored annotation: /product="monocyte chemotactic protein" ignored annotation: /db_xref="PID:g2340091" translation = MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT ignored annotation: repeat_region complement(9161..9452) ignored annotation: /rpt_family="ALU" ignored annotation: misc_feature 9951..10067 ignored annotation: /gene="MCP-4" ignored annotation: /note="match to human EST AA426245 (NID:g2107586) ignored annotation: zv83e03.r1" ignored annotation: misc_feature 9951..10067 ignored annotation: /gene="MCP-4" ignored annotation: /note="match to human EST AA403048 (NID:g2055610) ignored annotation: zv63d09.r1" ignored annotation: misc_feature 9951..10067 ignored annotation: /gene="MCP-4" ignored annotation: /note="match to human EST T64262 (NID:g668127) yc09a06.r1" ignored annotation: misc_feature 10504..10595 ignored annotation: /gene="MCP-4" ignored annotation: /note="match to human EST T64262 (NID:g668127) yc09a06.r1" ignored annotation: misc_feature 10504..10726 ignored annotation: /note="match to human EST AA403048 (NID:g2055610) ignored annotation: zv63d09.r1" ignored annotation: misc_feature 10504..10611 ignored annotation: /note="match to human EST AA426245 (NID:g2107586) ignored annotation: zv83e03.r1" ignored annotation: misc_feature complement(10559..11088) ignored annotation: /note="match to human EST AA404346 (NID:g2059071) ignored annotation: zv63d09.s1" ignored annotation: misc_feature complement(10676..11088) ignored annotation: /note="match to human EST T64134 (NID:g667999) yc09a06.s1" ignored annotation: misc_feature 10817..11088 ignored annotation: /note="match to human EST C00820 (NID:g1433050)" ignored annotation: repeat_region complement(11388..11410) ignored annotation: /rpt_family="L1" ignored annotation: misc_feature complement(12859..12929) ignored annotation: /note="match to human EST D21008 (NID:g504828)" ignored annotation: repeat_region 14553..14656 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(16487..16594) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(16612..16901) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(18162..18384) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 19534..19647 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 19648..19686 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(26321..26348) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 27743..28035 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 28366..28392 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 28490..28512 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(28807..28827) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(29912..29993) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(30384..30672) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 31292..31317 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 33022..33045 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 33825..34152 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(34242..34369) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(34578..34859) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(36578..36610) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(37312..37342) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(37683..37838) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(37852..37959) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 40754..41037 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 41055..41338 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 41343..41363 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 43586..43607 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(46738..47032) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(57803..57835) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 57962..58250 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 58574..58843 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 59889..60178 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 60179..60213 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 60382..60421 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(61580..61868) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 62573..63819 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(68474..68765) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 70746..70784 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(76188..76493) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 76478..76656 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(81212..81508) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(81522..81619) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(81636..82262) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 84233..84492 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(85230..85263) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(85264..85565) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 85895..85925 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(86136..86206) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(92598..92887) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 93762..93780 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(103505..103626) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(104724..104749) ignored annotation: /rpt_family="L1" ignored annotation: BASE COUNT 29663 a 25319 c 24180 g 28653 t // ** orig/raws/AC002482:2026: missing "mRNA" entry === AC004022 === locus = AC004022 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="7" ignored annotation: /clone="GS155M11" ignored annotation: /clone_lib="GSBAC1" ignored annotation: /map="7q21-q22" ignored annotation: repeat_region 1..989 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 1333..1941 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 2000..2292 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 2450..2601 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 4884..5107 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 5464..5581 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 5753..6177 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 6302..6386 ignored annotation: /rpt_family="Retroviral" ignored annotation: misc_feature 7851..7934 ignored annotation: /note="match to EST AA256366 (NID:g1891905) zr79h12.r1" ignored annotation: misc_feature 8940..9032 ignored annotation: /note="match to EST AA256366 (NID:g1891905) zr79h12.r1" ignored annotation: misc_feature complement(8940..9032) ignored annotation: /note="match to EST H80516 (NID:g1058605) yu76b06.s1" ignored annotation: misc_feature complement(8942..9032) ignored annotation: /note="match to EST H49508 (NID:g989349) yq20h12.s1" ignored annotation: misc_feature complement(9293..9438) ignored annotation: /note="match to EST H49508 (NID:g989349) yq20h12.s1" ignored annotation: misc_feature 9293..9438 ignored annotation: /note="match to EST AA256366 (NID:g1891905) zr79h12.r1" ignored annotation: misc_feature complement(9293..9438) ignored annotation: /note="match to EST H80516 (NID:g1058605) yu76b06.s1" ignored annotation: repeat_region 10073..10366 ignored annotation: /rpt_family="L2" ignored annotation: misc_feature complement(11651..11823) ignored annotation: /note="match to EST H49508 (NID:g989349) yq20h12.s1" ignored annotation: repeat_region 12453..12787 ignored annotation: /rpt_family="MER2_type" ignored annotation: repeat_region 15031..15133 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 15140..15434 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 15690..15983 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 17416..17700 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 18269..19080 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 19090..19791 ignored annotation: /rpt_family="MER50" ignored annotation: repeat_region 20062..20706 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 22243..22678 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 23388..25206 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 25323..25531 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 25899..26228 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 27005..27146 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 27814..27976 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 29198..29901 ignored annotation: /rpt_family="MER50" ignored annotation: repeat_region 29917..30084 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 30165..30416 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 32285..32347 ignored annotation: /rpt_family="(GA)n" ignored annotation: repeat_region 32335..32625 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 32962..33104 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 33580..33915 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 34034..34316 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 34317..34358 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 34525..34758 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 35069..35816 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 37505..38491 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 38496..38791 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 38794..40367 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 40358..40794 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 40882..40932 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 42055..42140 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 42479..42661 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 42721..42906 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 43323..43444 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 43833..44387 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 44441..44845 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 44936..45386 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 45390..45603 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 45697..45899 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 46176..46355 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 46420..46743 ignored annotation: /rpt_family="L2" ignored annotation: gene 47311..72842 ignored annotation: /gene="H_GS115M11.1" CDS = 47311..47384,53393..53463,54997..55052,56296..56464,60209..60335,63575..63775,65420..65501,69453..69581,72684..72842 ignored annotation: /gene="H_GS115M11.1" ignored annotation: /note="match to e235828 (PID:g1262347)" ignored annotation: /codon_start=1 ignored annotation: /product="aryldiakylphosphatase" ignored annotation: /db_xref="PID:g2795823" translation = MAKLIALTLLGMGLALFRNHQSSYQTRLNALREVQPVELPNCNLVKGIETGSEDLEILPNGLAFISSGLKYPGIKSFNPNSPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTFTDEDNAMYLLVVNHPDAKSTVELFKFQEEEKSLLHLKTIRHKLLPNLNDIVAVGPEHFYGTNDHYFLDPYLQSWEMYLGLAWSYVVYYSPSEVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCHPNGMKIFFYDSENPPASEVLRIQNILTEEPKVTQVYAENGTVLQGSTVASVYKGKLLIGTVFHKALYCEL ignored annotation: repeat_region 47928..48046 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 48614..48700 ignored annotation: /rpt_family="MER1_type" ignored annotation: repeat_region 50115..50302 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 50474..50887 ignored annotation: /rpt_family="MaLR" ignored annotation: repeat_region 51165..51298 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 57042..57210 ignored annotation: /rpt_family="MER1_type" ignored annotation: repeat_region 57414..57708 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 59042..59309 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 59429..59590 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 61183..61282 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 62005..62092 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 62618..62720 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 63012..63102 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 63255..63310 ignored annotation: /rpt_family="(CA)n" ignored annotation: repeat_region 64435..64726 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 66056..66374 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 67114..67153 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 67156..67452 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 67454..67822 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 68106..68228 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 69674..69979 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 71923..72358 ignored annotation: /rpt_family="Retroviral" ignored annotation: repeat_region 73979..74275 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 77354..77505 ignored annotation: /rpt_family="Alu" ignored annotation: misc_feature 80865..81313 ignored annotation: /note="match to EST AA470846 (NID:g2198155) ne21a10.s1" ignored annotation: misc_feature complement(83678..83794) ignored annotation: /note="match to EST AA215910 (NID:g1815857)" ignored annotation: repeat_region 83800..84094 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 84101..84166 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 88388..88489 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 89239..89320 ignored annotation: /rpt_family="MER4-group" ignored annotation: repeat_region 89442..89601 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 89648..89705 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 92871..92963 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 93275..93532 ignored annotation: /rpt_family="MER1_type" ignored annotation: repeat_region 94061..94353 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 95113..95198 ignored annotation: /rpt_family="U13" ignored annotation: repeat_region 96367..96655 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 96775..96997 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 101570..101762 ignored annotation: /rpt_family="MER1_type" ignored annotation: repeat_region 105101..105221 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 106378..106476 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 107765..107921 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 108073..108346 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 111094..111388 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 113018..113290 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 113309..114133 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 114286..115551 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 115582..115626 ignored annotation: /rpt_family="Alu" ignored annotation: BASE COUNT 35288 a 22586 c 22851 g 35827 t // ** orig/raws/AC004022:2244: missing "mRNA" entry === AC004130 === locus = AC004130 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="7" ignored annotation: /clone="RG293F17" ignored annotation: /clone_lib="CITB-HS-A" ignored annotation: /map="7p15-p21" ignored annotation: repeat_region 1078..1302 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 1939..2240 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 4266..4475 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 6166..6460 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 8190..9034 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 9046..9128 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 9629..9780 ignored annotation: /rpt_family="RETROVIRAL" ignored annotation: repeat_region 10256..10552 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 10693..10742 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 11122..11270 ignored annotation: /rpt_family="MER1_TYPE" ignored annotation: repeat_region 11568..11677 ignored annotation: /rpt_family="ALU" ignored annotation: misc_feature 14096..15596 ignored annotation: /note="CpG_island (%GC=67.1, o/e=0.70, #CpGs=138)" ignored annotation: gene 15522..93712 ignored annotation: /gene="ITB8" CDS = 15522..15648,47352..47437,50727..50901,62766..63012,64381..64546,65442..65600,75118..75213,78611..78700,82575..82709,85436..85841,88343..88568,89777..89886,93330..93493,93590..93712 ignored annotation: /gene="ITB8" ignored annotation: /note="match to P26012 (PID:g124975); H_RG293F17.1" ignored annotation: /codon_start=1 ignored annotation: /product="INTEGRIN BETA-8 SUBUNIT PRECURSOR" ignored annotation: /db_xref="PID:g2842786" translation = MCGSALAFFTAAFVCLQNDRRGPASFLWAAWVFSLVLGLGQGEDNRCASSNAASCARCLALGPECGWCVQEDFISGGSRSERCDIVSNLISKGCSVDSIEYPSVHVIIPTENEINTQVTPGEVSIQLRPGAEANFMLKVHPLKKYPVDLYYLVDVSASMHNNIEKLNSVGNDLSRKMAFFSRDFRLGFGSYVDKTVSPYISIHPERIHNQCSDYNLDCMPPHGYIHVLSLTENITEFEKAVHRQKISGNIDTPEGGFDAMLQAAVCESHIGWRKEAKRLLLVMTDQTSHLALDSKLAGIVVPNDGNCHLKNNVYVKSTTMEHPSLGQLSEKLIDNNINVIFAVQGKQFHWYKDLLPLLPGTIAGEIESKAANLNNLVVEAYQKLISEVKVQVENQVQGIYFNITAICPDGSRKPGMEGCRNVTSNDEVLFNVTVTMKKCDVTGGKNYAIIKPIGFNETAKIHIHRNCSCQCEDNRGPKGKCVDETFLDSKCFQCDENKCHFDEDQFSSESCKSHKDQPVCSGRGVCVCGKCSCHKIKLGKVYGKYCEKDDFSCPYHHGNLCAGHGECEAGRCQCFSGWEGDRCQCPSAAAQHCVNSKGQVCSGRGTCVCGRCECTDPRSIGRFCEHCPTCYTACKENWNCMQCLHPHNLSQAILDQCKTSCALMEQQHYVDQTSECFSSPSYLRIFFIIFIVTFLIGLLKVLIIRQVILQWNSNKIKSSSDYRVSASKKDKLILQSVCTRAVTYRREKPEEIKMDISKLNAHETFRCNF ignored annotation: repeat_region 16367..16411 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 19318..19695 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 19719..20019 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 20171..20303 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 21192..21371 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 22060..22362 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 22627..22923 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 23461..23764 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 25495..25561 ignored annotation: /rpt_family="MARINER" ignored annotation: repeat_region 28545..28641 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 28642..28695 ignored annotation: /rpt_family="RETROVIRAL" ignored annotation: repeat_region 28981..29310 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 29362..29706 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 30602..30960 ignored annotation: /rpt_family="MALR" ignored annotation: repeat_region 33045..33124 ignored annotation: /rpt_family="MARINER" ignored annotation: repeat_region 33574..33727 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 33861..34162 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 35013..35240 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 37367..37666 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 38876..39009 ignored annotation: /rpt_family="RETROVIRAL" ignored annotation: repeat_region 41291..41433 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 41679..41977 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 42244..42417 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 42430..42876 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 44091..44913 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 45045..45375 ignored annotation: /rpt_family="MALR" ignored annotation: repeat_region 49090..49284 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 50198..50495 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 51157..51274 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 52969..53361 ignored annotation: /rpt_family="MALR" ignored annotation: repeat_region 53486..54129 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 54325..54628 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 54702..54921 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 56264..56393 ignored annotation: /rpt_family="L2" ignored annotation: misc_feature complement(62953..63034) ignored annotation: /gene="ITB8" ignored annotation: /note="match to EST AA644567 (NID:g2569785) ab63h07.s1" ignored annotation: repeat_region 64883..65176 ignored annotation: /rpt_family="ALU" ignored annotation: misc_feature complement(65432..65781) ignored annotation: /gene="ITB8" ignored annotation: /note="match to EST AA644567 (NID:g2569785) ab63h07.s1" ignored annotation: repeat_region 68145..68326 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 69959..70272 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 71081..71262 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 71269..71485 ignored annotation: /rpt_family="MER1_TYPE" ignored annotation: repeat_region 72363..73091 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 76240..76507 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 76645..76810 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 77190..77564 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 78837..78911 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 79399..79567 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 79872..80162 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 80938..81240 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 81820..81869 ignored annotation: /rpt_family="L2" ignored annotation: repeat_region 84688..84993 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 88817..89012 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 89043..89332 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 89984..90280 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 90379..90477 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 90993..91064 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 94867..95168 ignored annotation: /rpt_family="ALU" ignored annotation: misc_feature 98971..99377 ignored annotation: /note="match to EST H00880 (NID:g863813) yj27b12.r1" ignored annotation: misc_feature complement(99176..99474) ignored annotation: /note="match to EST R24249 (NID:g779137) yh30b08.s1" ignored annotation: misc_feature complement(99211..99443) ignored annotation: /note="match to EST H00881 (NID:g863814) yj27b12.s1" ignored annotation: repeat_region 99930..100412 ignored annotation: /rpt_family="MER9" ignored annotation: repeat_region 100510..100848 ignored annotation: /rpt_family="MALR" ignored annotation: repeat_region 101361..101514 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 102988..103279 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 104046..104167 ignored annotation: /rpt_family="MER1_TYPE" ignored annotation: repeat_region 104205..104268 ignored annotation: /rpt_family="MER1_TYPE" ignored annotation: repeat_region 104365..104588 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 104589..104657 ignored annotation: /rpt_family="(TA)N" ignored annotation: repeat_region 106532..106833 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 106874..107195 ignored annotation: /rpt_family="MER2_TYPE" ignored annotation: repeat_region 107819..107869 ignored annotation: /rpt_family="(CA)N" ignored annotation: repeat_region 107941..108082 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 108092..108538 ignored annotation: /rpt_family="RETROVIRAL" ignored annotation: repeat_region 108747..109044 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 109070..109716 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 109753..110126 ignored annotation: /rpt_family="MALR" ignored annotation: repeat_region 110127..110225 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 110227..110741 ignored annotation: /rpt_family="MALR" ignored annotation: repeat_region 110746..111478 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 111485..112770 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 112758..112897 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 113032..113356 ignored annotation: /rpt_family="L1" ignored annotation: BASE COUNT 35883 a 21756 c 21914 g 36662 t // ** orig/raws/AC004130:2229: missing "mRNA" entry === AF000573 === locus = AF000573 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: promoter 1..1074 ignored annotation: /evidence=experimental ignored annotation: exon 1075..1256 ignored annotation: /number=1 mRNA = 1075..1256,7876..7947,8752..8840,13210..13315,31008..31067,32794..32885,35750..35784,36603..36682,37289..37388,39212..39336,41968..42072,45085..45211,50295..50476,55090..55449 ignored annotation: /product="homogentisate 1,2-dioxygenase" CDS = 1242..1256,7876..7947,8752..8840,13210..13315,31008..31067,32794..32885,35750..35784,36603..36682,37289..37388,39212..39336,41968..42072,45085..45211,50295..50476,55090..55239 ignored annotation: /note="This genomic sequence codes for the cDNA described ignored annotation: in Fernandez-Canon et al.: The molecular basis of ignored annotation: alkaptonuria, Nature Genetics 14: 19-24 (1996); deposited ignored annotation: in GenBank Accession Number U63008" ignored annotation: /codon_start=1 ignored annotation: /product="homogentisate 1,2-dioxygenase" ignored annotation: /db_xref="PID:g2130647" translation = MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGHVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEKASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNSRNPAEPN ignored annotation: exon 7876..7947 ignored annotation: /number=2 ignored annotation: exon 8752..8840 ignored annotation: /number=3 ignored annotation: exon 13210..13315 ignored annotation: /number=4 ignored annotation: exon 31008..31067 ignored annotation: /number=5 ignored annotation: exon 32794..32885 ignored annotation: /number=6 ignored annotation: exon 35750..35784 ignored annotation: /number=7 ignored annotation: exon 36603..36682 ignored annotation: /number=8 ignored annotation: exon 37289..37388 ignored annotation: /number=9 ignored annotation: exon 39212..39336 ignored annotation: /number=10 ignored annotation: exon 41968..42072 ignored annotation: /number=11 ignored annotation: exon 45085..45211 ignored annotation: /number=12 ignored annotation: exon 50295..50476 ignored annotation: /number=13 ignored annotation: exon 55090..55449 ignored annotation: /number=14 ignored annotation: BASE COUNT 15929 a 11683 c 11114 g 16963 t 106 others 2041 ggccaggctt gaatcaatgc tcaatgcatg catgtgtaan tgaacagaac tgcccagaac ** orig/raws/AF000573:118: invalid base letter "n" === AF005058 === locus = AF005058 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 2..5161 ignored annotation: /gene="CXCR-4" ignored annotation: TATA_signal 919..923 ignored annotation: /gene="CXCR-4" ignored annotation: exon 950..1052 ignored annotation: /gene="CXCR-4" ignored annotation: /number=1 ignored annotation: 5'UTR 950..1037 ignored annotation: /gene="CXCR-4" mRNA = 950..1052,3185..4760 ignored annotation: /gene="CXCR-4" ignored annotation: /product="chemokine receptor" CDS = 1038..1052,3185..4228 ignored annotation: /gene="CXCR-4" ignored annotation: /note="seven-transmembrane G-coupled receptor for the CXC ignored annotation: chemokine SDF-1; entry co-receptor for HIV-1 strains with ignored annotation: the syncytium-inducing phenotype" ignored annotation: /codon_start=1 ignored annotation: /product="chemokine receptor" ignored annotation: /db_xref="PID:g2735719" translation = MEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSVSRGSSLKILSKGKRGGHSSVSTESESSSFHSS ignored annotation: intron 1053..3184 ignored annotation: /gene="CXCR-4" ignored annotation: /number=1 ignored annotation: exon 3185..4760 ignored annotation: /gene="CXCR-4" ignored annotation: /number=2 ignored annotation: 3'UTR 4229..4760 ignored annotation: /gene="CXCR-4" ignored annotation: polyA_signal 4726..4731 ignored annotation: /gene="CXCR-4" ignored annotation: BASE COUNT 1160 a 1338 c 1287 g 1376 t mRNA range 950..1052 mRNA range 3185..4760 CDS range 1038..1052 CDS range 3185..4228 seq_ini = 1 seq_fin = 5161 i = 4228 last codon bas = gc[taa]cac last codon lab = EF[DEF]YYY === AF005260 === locus = AF005260 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="4" ignored annotation: /map="4p16.1" mRNA = <861..1326,2751..>3286 ignored annotation: /product="homeodomain-containing protein BAPX1" CDS = 861..1326,2751..3286 ignored annotation: /note="Drosophila bagpipe gene homolog" ignored annotation: /codon_start=1 ignored annotation: /product="homeodomain-containing protein BAPX1" ignored annotation: /db_xref="PID:g2766600" translation = MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDAGALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ ignored annotation: BASE COUNT 820 a 1325 c 1470 g 834 t mRNA range 861..1326 mRNA range 2751..3286 CDS range 861..1326 CDS range 2751..3286 seq_ini = 1 seq_fin = 4449 i = 3286 last codon bas = ag[tga]acc last codon lab = EF[DEF]NNN === AF006501 === locus = AF006501 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /clone="c1155" mRNA = 7031..7128,10095..10164,12650..12780,20414..20485,20940..21114 ignored annotation: /gene="POLRF" ignored annotation: /product="RNA polymerase II subunit 14.4 kDa" ignored annotation: gene 7031..21114 ignored annotation: /gene="POLRF" CDS = 7109..7128,10095..10164,12650..12780,20414..20485,20940..21030 ignored annotation: /gene="POLRF" ignored annotation: /codon_start=1 ignored annotation: /product="RNA polymerase II subunit 14.4 kDa" ignored annotation: /db_xref="PID:g2262073" translation = MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD ignored annotation: BASE COUNT 8760 a 10368 c 10941 g 10017 t 21 others 5581 gtgggccgaa acaggcacgg ttcctgcctg natgaaattc atgatctgga gggatagatg ** orig/raws/AF006501:152: invalid base letter "n" === AF008303 === locus = AF008303 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: repeat_region complement(32..207) ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: GC_signal 847..852 ignored annotation: GC_signal 897..902 ignored annotation: GC_signal 911..916 ignored annotation: TATA_signal 938..943 mRNA = 967..1275,3096..3986 ignored annotation: /product="prepro placental TGF-beta" ignored annotation: exon 967..1275 ignored annotation: /number=1 CDS = 1038..1275,3096..3745 ignored annotation: /note="PTGFB" ignored annotation: /codon_start=1 ignored annotation: /product="prepro placental TGF-beta" ignored annotation: /db_xref="PID:g2580620" translation = MLLVLLVLSWLPHGGALSLAEASRASFPGPSELHSEDSRFRELRKRYEDLLTRLRANQSWEDSNTDLVPAPAVRILTPEVRLGSGGHLHLRISRAALPEGLPEASRLHRALFRLSPTASRSWDVTRPLRRQLSLARPQAPALHLRLSPPPSQSDQLLAESSSARPQLELHLRPQAARGRRRARARNGDHCPLGPGRCCRLHTVRASLEDLGWADWVLSPREVQVTMCIGACPSQFRAANMHAQIKTSLHRLKPDTVPAPCCVPASYNPMVLIQKTDTGVSLQTYDDLLAKDCHCI ignored annotation: intron 1276..3095 ignored annotation: /number=1 ignored annotation: repeat_region 2077..2316 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(2632..2941) ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: exon 3096..3986 ignored annotation: /number=2 ignored annotation: mat_peptide 3407..3742 ignored annotation: /note="putative" ignored annotation: /product="placental TGB-beta" ignored annotation: polyA_signal 3964..3969 ignored annotation: BASE COUNT 891 a 1107 c 1114 g 890 t mRNA range 967..1275 mRNA range 3096..3986 CDS range 1038..1275 CDS range 3096..3745 seq_ini = 1 seq_fin = 4002 i = 3745 last codon bas = ta[tga]gca last codon lab = EF[DEF]YYY === AF009356 === locus = AF009356 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /map="1q25-q31" ignored annotation: exon <1..91 ignored annotation: /gene="RGS16" ignored annotation: /number=1 mRNA = <1..91,967..1077,1822..1886,2174..2340,3394..>3653 ignored annotation: /gene="RGS16" ignored annotation: gene <1..>3653 ignored annotation: /gene="RGS16" CDS = 48..91,967..1077,1822..1886,2174..2340,3394..3615 ignored annotation: /gene="RGS16" ignored annotation: /function="GTPase-activating protein (GAP) for G-alpha ignored annotation: proteins" ignored annotation: /note="RGS-r/RGS16" ignored annotation: /codon_start=1 ignored annotation: /product="regulator of G-protein signaling-16" ignored annotation: /db_xref="PID:g2828565" translation = MCRTLAAFPTTCLERAKEFKTRLGIFLHKSELGCDTGSTGKFEWGSKHSKENRNFSEDVLGWRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDLAAQASAASATLSSCSLDEPSHT ignored annotation: exon 967..1077 ignored annotation: /gene="RGS16" ignored annotation: /number=2 ignored annotation: exon 1822..1886 ignored annotation: /gene="RGS16" ignored annotation: /number=3 ignored annotation: exon 2174..2340 ignored annotation: /gene="RGS16" ignored annotation: /number=4 ignored annotation: exon 3394..>3653 ignored annotation: /gene="RGS16" ignored annotation: /number=5 ignored annotation: BASE COUNT 877 a 876 c 1010 g 887 t 3 others 2761 atggcagctg catttgctaa agaacacagc gccacctggt ggaannntca gagcctgcct ** orig/raws/AF009356:108: invalid base letter "n" === AF010238 === locus = AF010238 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="3" ignored annotation: /map="3p25-26" ignored annotation: repeat_region 141..438 ignored annotation: /rpt_family="Alu" ignored annotation: promoter 565..670 ignored annotation: /gene="VHL" ignored annotation: gene 565..12993 ignored annotation: /gene="VHL" ignored annotation: 5'UTR 643..714 ignored annotation: /gene="VHL" ignored annotation: /note="5'UTR" mRNA = 643..1054,5392..5514,8667..12993 ignored annotation: /gene="VHL" ignored annotation: exon 643..1054 ignored annotation: /gene="VHL" ignored annotation: /number=1 CDS = 715..1054,5392..5514,8667..8845 ignored annotation: /gene="VHL" ignored annotation: /note="elogin binding protein; VHL protein; pVHL" ignored annotation: /codon_start=1 ignored annotation: /product="von Hippel-Lindau tumor suppressor" ignored annotation: /db_xref="PID:g2282064" translation = MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD ignored annotation: intron 1055..5391 ignored annotation: /gene="VHL" ignored annotation: /number=1 ignored annotation: repeat_region 1227..1440 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 2038..2185 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 3851..4074 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 4299..4588 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 5062..5351 ignored annotation: /rpt_family="Alu" ignored annotation: exon 5392..5514 ignored annotation: /gene="VHL" ignored annotation: /number=2 ignored annotation: intron 5515..8666 ignored annotation: /gene="VHL" ignored annotation: /number=1 ignored annotation: repeat_region 5901..6187 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 6254..6558 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 6824..6981 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 7205..7493 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 7569..7620 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 7678..7867 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 8003..8292 ignored annotation: /rpt_family="Alu" ignored annotation: exon 8667..12993 ignored annotation: /gene="VHL" ignored annotation: /number=3 ignored annotation: 3'UTR 8846..12993 ignored annotation: /gene="VHL" ignored annotation: /note="3'UTR" ignored annotation: polyA_signal 12354..12359 ignored annotation: /gene="VHL" ignored annotation: polyA_signal 12408..12413 ignored annotation: /gene="VHL" ignored annotation: repeat_region 12864..13154 ignored annotation: /rpt_family="Alu" ignored annotation: polyA_signal 12988..12993 ignored annotation: /gene="VHL" ignored annotation: BASE COUNT 3570 a 3314 c 3560 g 4098 t 1 others 9781 ttgttttttt gggatggagk ctcactcttg tcacccaggc tggagtgcag tggcgccatc ** orig/raws/AF010238:288: invalid base letter "k" === AF015812 === locus = AF015812 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="17q23-q25" mRNA = 938..1151,2419..2584,2933..3029,3135..3268,3383..3448,3677..3818,3900..4060,4149..4321,4704..4814,5028..5089,5138..5197,6441..6665,6882..7586 ignored annotation: /gene="HUMP68" ignored annotation: /product="RNA helicase p68" ignored annotation: gene 938..7586 ignored annotation: /gene="HUMP68" ignored annotation: 5'UTR 938..1107 ignored annotation: /gene="HUMP68" CDS = 1108..1151,2419..2584,2933..3029,3135..3268,3383..3448,3677..3818,3900..4060,4149..4321,4704..4814,5028..5089,5138..5197,6441..6665,6882..7285 ignored annotation: /gene="HUMP68" ignored annotation: /note="nuclear protein; similar to DEAD box protein ignored annotation: encoded by GenBank Accession Number X52104" ignored annotation: /codon_start=1 ignored annotation: /product="RNA helicase p68" ignored annotation: /db_xref="PID:g2599360" translation = MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAAAPMIGYPMPTGYSQ ignored annotation: 3'UTR 7286..7586 ignored annotation: /gene="HUMP68" ignored annotation: BASE COUNT 2059 a 1513 c 1990 g 2272 t mRNA range 938..1151 mRNA range 2419..2584 mRNA range 2933..3029 mRNA range 3135..3268 mRNA range 3383..3448 mRNA range 3677..3818 mRNA range 3900..4060 mRNA range 4149..4321 mRNA range 4704..4814 mRNA range 5028..5089 mRNA range 5138..5197 mRNA range 6441..6665 mRNA range 6882..7586 CDS range 1108..1151 CDS range 2419..2584 CDS range 2933..3029 CDS range 3135..3268 CDS range 3383..3448 CDS range 3677..3818 CDS range 3900..4060 CDS range 4149..4321 CDS range 4704..4814 CDS range 5028..5089 CDS range 5138..5197 CDS range 6441..6665 CDS range 6882..7285 seq_ini = 1 seq_fin = 7834 i = 7285 last codon bas = aa[taa]gac last codon lab = EF[DEF]YYY === AF015954 === locus = AF015954 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="11q13" ignored annotation: /clone="Genome Systems clone address DMPC-HFF#1-0258-E" ignored annotation: /note="human genomic P1 clone" mRNA = <135..221,482..566,1686..1799,2455..2609,2710..2806,2889..2969,3059..3184,3349..3413,3495..3704,3788..>3898 ignored annotation: /note="C1 peptidase family member" ignored annotation: /product="lymphopain" CDS = 135..221,482..566,1686..1799,2455..2609,2710..2806,2889..2969,3059..3184,3349..3413,3495..3704,3788..3898 ignored annotation: /note="C1 peptidase family member" ignored annotation: /codon_start=1 ignored annotation: /product="lymphopain" ignored annotation: /db_xref="PID:g2582181" translation = MALTAHPSCLLALLVAGLAQGIRGPLRAQDLGPQPLELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLYGYRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVAGAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVHELLDCGRCGDGCHGGFVWDAFITVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGITKFPLTARVQKPDMKPRVSCPP ignored annotation: BASE COUNT 814 a 1239 c 1143 g 835 t mRNA range 135..221 mRNA range 482..566 mRNA range 1686..1799 mRNA range 2455..2609 mRNA range 2710..2806 mRNA range 2889..2969 mRNA range 3059..3184 mRNA range 3349..3413 mRNA range 3495..3704 mRNA range 3788..3898 CDS range 135..221 CDS range 482..566 CDS range 1686..1799 CDS range 2455..2609 CDS range 2710..2806 CDS range 2889..2969 CDS range 3059..3184 CDS range 3349..3413 CDS range 3495..3704 CDS range 3788..3898 seq_ini = 1 seq_fin = 4031 i = 3898 last codon bas = cc[tga]acc last codon lab = EF[DEF]NNN === AF016052 === locus = AF016052 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="G16-1" mRNA = 787..868,4494..4996,5251..5398,7458..9700 ignored annotation: /gene="ZNF191" ignored annotation: /product="zinc finger protein ZNF191" ignored annotation: exon 787..868 ignored annotation: /gene="ZNF191" ignored annotation: gene 787..9700 ignored annotation: /gene="ZNF191" ignored annotation: exon 4494..4996 ignored annotation: /gene="ZNF191" CDS = 4577..4996,5251..5398,7458..7996 ignored annotation: /gene="ZNF191" ignored annotation: /codon_start=1 ignored annotation: /product="zinc finger protein ZNF191" ignored annotation: /db_xref="PID:g2394174" translation = MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEIFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKREVLVEDMVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDGRTENGALAPKQELPSALESHEVPGTLSMGVPQIFKYGETCFPKGRFERKRNPSRKKQHICDECGKHFSQGSALILHQRIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTGEKPYECVQCGKSYSQSSNLFRHQRRHNAEKLLNVVKV ignored annotation: exon 5251..5398 ignored annotation: /gene="ZNF191" ignored annotation: exon 7458..9700 ignored annotation: /gene="ZNF191" ignored annotation: BASE COUNT 2653 a 1892 c 2031 g 3124 t mRNA range 787..868 mRNA range 4494..4996 mRNA range 5251..5398 mRNA range 7458..9700 CDS range 4577..4996 CDS range 5251..5398 CDS range 7458..7996 seq_ini = 1 seq_fin = 9700 i = 7996 last codon bas = tt[taa]gaa last codon lab = EF[DEF]YYY === AF016898 === locus = AF016898 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="14" ignored annotation: /map="14q24" ignored annotation: /note="fragment B" ignored annotation: exon 2704..3007 ignored annotation: /number=1 mRNA = 2704..3007,5339..5443,16180..>16695 ignored annotation: /product="B-ATF" CDS = 2945..3007,5339..5443,16180..16389 ignored annotation: /codon_start=1 ignored annotation: /product="B-ATF" ignored annotation: /db_xref="PID:g2565253" translation = MPHSSDSSDSSFSRSPPPGKQDSSDDVRRVQRREKNRIAAQKSRQRQTQKADTLHLESEDLEKQNAALRKEIKQLTEELKYFTSVLNSHEPLCSVLAASTPSPPEVVYSAHAFHQPHVSSPRFQP ignored annotation: exon 5339..5443 ignored annotation: /number=2 ignored annotation: exon 16180..>16695 ignored annotation: /number=3 ignored annotation: polyA_signal 16690..16695 ignored annotation: BASE COUNT 4746 a 3880 c 3804 g 4545 t 29 others 61 cctgaaaggn gctttcaata cactaggata atgcagctca taagtgccat aaatgaagag ** orig/raws/AF016898:48: invalid base letter "n" === AF017178 === locus = AF017178 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 273..279 ignored annotation: /gene="COL1A1" ignored annotation: gene 273..17776 ignored annotation: /gene="COL1A1" mRNA = <420..522,1986..2180,2322..2356,2468..2494,2585..2686,3409..3480,3708..3752,3911..3964,4128..4181,4680..4733,4850..4903,5234..5287,5376..5420,5537..5590,5705..5749,5928..5981,6239..6337,6426..6470,6574..6672,6804..6857,7076..7183,7278..7331,7457..7555,7721..7774,7863..7961,8858..8911,9055..9108,9212..9265,9377..9430,9882..9926,10020..10118,10416..10523,10982..11089,11310..11363,11527..11580,11799..11906,11995..12048,12175..12228,12369..12530,12632..12739,12897..13004,13112..13165,13270..13377,13758..13811,13924..14031,14370..14423,14784..14891,14983..15265,15398..15588,15877..16119,16249..17776 ignored annotation: /gene="COL1A1" ignored annotation: /product="pro alpha 1(I) collagen" CDS = 420..522,1986..2180,2322..2356,2468..2494,2585..2686,3409..3480,3708..3752,3911..3964,4128..4181,4680..4733,4850..4903,5234..5287,5376..5420,5537..5590,5705..5749,5928..5981,6239..6337,6426..6470,6574..6672,6804..6857,7076..7183,7278..7331,7457..7555,7721..7774,7863..7961,8858..8911,9055..9108,9212..9265,9377..9430,9882..9926,10020..10118,10416..10523,10982..11089,11310..11363,11527..11580,11799..11906,11995..12048,12175..12228,12369..12530,12632..12739,12897..13004,13112..13165,13270..13377,13758..13811,13924..14031,14370..14423,14784..14891,14983..15265,15398..15588,15877..16119,16249..16395 ignored annotation: /gene="COL1A1" ignored annotation: /codon_start=1 ignored annotation: /product="pro alpha 1(I) collagen" ignored annotation: /db_xref="PID:g2736081" translation = MFSFVDLRLLLLLAATALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRICVCDNGKVLCDDVICDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPVAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLKGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGFDVGPVCFL ignored annotation: exon 420..522 ignored annotation: /gene="COL1A1" ignored annotation: /number=1 ignored annotation: intron 523..1985 ignored annotation: /gene="COL1A1" ignored annotation: /number=1 ignored annotation: exon 1986..2180 ignored annotation: /gene="COL1A1" ignored annotation: /number=2 ignored annotation: intron 2181..2321 ignored annotation: /gene="COL1A1" ignored annotation: /number=2 ignored annotation: exon 2322..2356 ignored annotation: /gene="COL1A1" ignored annotation: /number=3 ignored annotation: intron 2357..2467 ignored annotation: /gene="COL1A1" ignored annotation: /number=3 ignored annotation: exon 2468..2494 ignored annotation: /gene="COL1A1" ignored annotation: /number=4 ignored annotation: intron 2495..2584 ignored annotation: /gene="COL1A1" ignored annotation: /number=4 ignored annotation: exon 2585..2686 ignored annotation: /gene="COL1A1" ignored annotation: /number=5 ignored annotation: intron 2687..3408 ignored annotation: /gene="COL1A1" ignored annotation: /number=5 ignored annotation: exon 3409..3480 ignored annotation: /gene="COL1A1" ignored annotation: /number=6 ignored annotation: intron 3481..3707 ignored annotation: /gene="COL1A1" ignored annotation: /number=6 ignored annotation: exon 3708..3752 ignored annotation: /gene="COL1A1" ignored annotation: /number=7 ignored annotation: intron 3753..3910 ignored annotation: /gene="COL1A1" ignored annotation: /number=7 ignored annotation: exon 3911..3964 ignored annotation: /gene="COL1A1" ignored annotation: /number=8 ignored annotation: intron 3965..4127 ignored annotation: /gene="COL1A1" ignored annotation: /number=8 ignored annotation: exon 4128..4181 ignored annotation: /gene="COL1A1" ignored annotation: /number=9 ignored annotation: intron 4182..4679 ignored annotation: /gene="COL1A1" ignored annotation: /number=9 ignored annotation: exon 4680..4733 ignored annotation: /gene="COL1A1" ignored annotation: /number=10 ignored annotation: intron 4734..4849 ignored annotation: /gene="COL1A1" ignored annotation: /number=10 ignored annotation: exon 4850..4903 ignored annotation: /gene="COL1A1" ignored annotation: /number=11 ignored annotation: intron 4904..5233 ignored annotation: /gene="COL1A1" ignored annotation: /number=11 ignored annotation: exon 5234..5287 ignored annotation: /gene="COL1A1" ignored annotation: /number=12 ignored annotation: intron 5288..5375 ignored annotation: /gene="COL1A1" ignored annotation: /number=12 ignored annotation: exon 5376..5420 ignored annotation: /gene="COL1A1" ignored annotation: /number=13 ignored annotation: intron 5421..5536 ignored annotation: /gene="COL1A1" ignored annotation: /number=13 ignored annotation: exon 5537..5590 ignored annotation: /gene="COL1A1" ignored annotation: /number=14 ignored annotation: intron 5591..5704 ignored annotation: /gene="COL1A1" ignored annotation: /number=14 ignored annotation: exon 5705..5749 ignored annotation: /gene="COL1A1" ignored annotation: /number=15 ignored annotation: intron 5750..5927 ignored annotation: /gene="COL1A1" ignored annotation: /number=15 ignored annotation: exon 5928..5981 ignored annotation: /gene="COL1A1" ignored annotation: /number=16 ignored annotation: intron 5982..6238 ignored annotation: /gene="COL1A1" ignored annotation: /number=16 ignored annotation: exon 6239..6337 ignored annotation: /gene="COL1A1" ignored annotation: /number=17 ignored annotation: intron 6338..6425 ignored annotation: /gene="COL1A1" ignored annotation: /number=17 ignored annotation: exon 6426..6470 ignored annotation: /gene="COL1A1" ignored annotation: /number=18 ignored annotation: intron 6471..6573 ignored annotation: /gene="COL1A1" ignored annotation: /number=18 ignored annotation: exon 6574..6672 ignored annotation: /gene="COL1A1" ignored annotation: /number=19 ignored annotation: intron 6673..6803 ignored annotation: /gene="COL1A1" ignored annotation: /number=19 ignored annotation: exon 6804..6857 ignored annotation: /gene="COL1A1" ignored annotation: /number=20 ignored annotation: intron 6858..7075 ignored annotation: /gene="COL1A1" ignored annotation: /number=20 ignored annotation: exon 7076..7183 ignored annotation: /gene="COL1A1" ignored annotation: /number=21 ignored annotation: intron 7184..7277 ignored annotation: /gene="COL1A1" ignored annotation: /number=21 ignored annotation: exon 7278..7331 ignored annotation: /gene="COL1A1" ignored annotation: /number=22 ignored annotation: intron 7332..7456 ignored annotation: /gene="COL1A1" ignored annotation: /number=22 ignored annotation: exon 7457..7555 ignored annotation: /gene="COL1A1" ignored annotation: /number=23 ignored annotation: intron 7556..7720 ignored annotation: /gene="COL1A1" ignored annotation: /number=23 ignored annotation: exon 7721..7774 ignored annotation: /gene="COL1A1" ignored annotation: /number=24 ignored annotation: intron 7775..7862 ignored annotation: /gene="COL1A1" ignored annotation: /number=24 ignored annotation: exon 7863..7961 ignored annotation: /gene="COL1A1" ignored annotation: /number=25 ignored annotation: intron 7962..8857 ignored annotation: /gene="COL1A1" ignored annotation: /number=25 ignored annotation: exon 8858..8911 ignored annotation: /gene="COL1A1" ignored annotation: /number=26 ignored annotation: intron 8912..9054 ignored annotation: /gene="COL1A1" ignored annotation: /number=26 ignored annotation: exon 9055..9108 ignored annotation: /gene="COL1A1" ignored annotation: /number=27 ignored annotation: intron 9109..9211 ignored annotation: /gene="COL1A1" ignored annotation: /number=27 ignored annotation: exon 9212..9265 ignored annotation: /gene="COL1A1" ignored annotation: /number=28 ignored annotation: intron 9266..9376 ignored annotation: /gene="COL1A1" ignored annotation: /number=28 ignored annotation: exon 9377..9430 ignored annotation: /gene="COL1A1" ignored annotation: /number=29 ignored annotation: intron 9431..9881 ignored annotation: /gene="COL1A1" ignored annotation: /number=29 ignored annotation: exon 9882..9926 ignored annotation: /gene="COL1A1" ignored annotation: /number=30 ignored annotation: intron 9927..10019 ignored annotation: /gene="COL1A1" ignored annotation: /number=30 ignored annotation: exon 10020..10118 ignored annotation: /gene="COL1A1" ignored annotation: /number=31 ignored annotation: intron 10119..10415 ignored annotation: /gene="COL1A1" ignored annotation: /number=31 ignored annotation: exon 10416..10523 ignored annotation: /gene="COL1A1" ignored annotation: /number=32 ignored annotation: intron 10524..10981 ignored annotation: /gene="COL1A1" ignored annotation: /number=32 ignored annotation: exon 10982..11089 ignored annotation: /gene="COL1A1" ignored annotation: /note="exons 33-34" ignored annotation: intron 11090..11309 ignored annotation: /gene="COL1A1" ignored annotation: /note="exons 33-34" ignored annotation: exon 11310..11363 ignored annotation: /gene="COL1A1" ignored annotation: /number=35 ignored annotation: intron 11364..11526 ignored annotation: /gene="COL1A1" ignored annotation: /number=35 ignored annotation: exon 11527..11580 ignored annotation: /gene="COL1A1" ignored annotation: /number=36 ignored annotation: intron 11581..11798 ignored annotation: /gene="COL1A1" ignored annotation: /number=36 ignored annotation: exon 11799..11906 ignored annotation: /gene="COL1A1" ignored annotation: /number=37 ignored annotation: intron 11907..11994 ignored annotation: /gene="COL1A1" ignored annotation: /number=37 ignored annotation: exon 11995..12048 ignored annotation: /gene="COL1A1" ignored annotation: /number=38 ignored annotation: intron 12049..12174 ignored annotation: /gene="COL1A1" ignored annotation: /number=38 ignored annotation: exon 12175..12228 ignored annotation: /gene="COL1A1" ignored annotation: /number=39 ignored annotation: intron 12229..12368 ignored annotation: /gene="COL1A1" ignored annotation: /number=39 ignored annotation: exon 12369..12530 ignored annotation: /gene="COL1A1" ignored annotation: /number=40 ignored annotation: intron 12531..12631 ignored annotation: /gene="COL1A1" ignored annotation: /number=40 ignored annotation: exon 12632..12739 ignored annotation: /gene="COL1A1" ignored annotation: /number=41 ignored annotation: intron 12740..12896 ignored annotation: /gene="COL1A1" ignored annotation: /number=41 ignored annotation: exon 12897..13004 ignored annotation: /gene="COL1A1" ignored annotation: /number=42 ignored annotation: intron 13005..13111 ignored annotation: /gene="COL1A1" ignored annotation: /number=42 ignored annotation: exon 13112..13165 ignored annotation: /gene="COL1A1" ignored annotation: /number=43 ignored annotation: intron 13166..13269 ignored annotation: /gene="COL1A1" ignored annotation: /number=43 ignored annotation: exon 13270..13377 ignored annotation: /gene="COL1A1" ignored annotation: /number=44 ignored annotation: intron 13378..13757 ignored annotation: /gene="COL1A1" ignored annotation: /number=44 ignored annotation: exon 13758..13811 ignored annotation: /gene="COL1A1" ignored annotation: /number=45 ignored annotation: intron 13812..13923 ignored annotation: /gene="COL1A1" ignored annotation: /number=45 ignored annotation: exon 13924..14031 ignored annotation: /gene="COL1A1" ignored annotation: /number=46 ignored annotation: intron 14032..14369 ignored annotation: /gene="COL1A1" ignored annotation: /number=46 ignored annotation: exon 14370..14423 ignored annotation: /gene="COL1A1" ignored annotation: /number=47 ignored annotation: intron 14424..14783 ignored annotation: /gene="COL1A1" ignored annotation: /number=47 ignored annotation: exon 14784..14891 ignored annotation: /gene="COL1A1" ignored annotation: /number=48 ignored annotation: intron 14892..14982 ignored annotation: /gene="COL1A1" ignored annotation: /number=48 ignored annotation: exon 14983..15265 ignored annotation: /gene="COL1A1" ignored annotation: /number=49 ignored annotation: intron 15266..15397 ignored annotation: /gene="COL1A1" ignored annotation: /number=49 ignored annotation: exon 15398..15588 ignored annotation: /gene="COL1A1" ignored annotation: /number=50 ignored annotation: intron 15589..15876 ignored annotation: /gene="COL1A1" ignored annotation: /number=50 ignored annotation: exon 15877..16119 ignored annotation: /gene="COL1A1" ignored annotation: /number=51 ignored annotation: intron 16120..16248 ignored annotation: /gene="COL1A1" ignored annotation: /number=51 ignored annotation: exon 16249..16395 ignored annotation: /gene="COL1A1" ignored annotation: /number=52 ignored annotation: polyA_signal 16644..16656 ignored annotation: /gene="COL1A1" ignored annotation: polyA_signal 17772..17776 ignored annotation: /gene="COL1A1" ignored annotation: BASE COUNT 3508 a 5727 c 5160 g 4214 t mRNA range 420..522 mRNA range 1986..2180 mRNA range 2322..2356 mRNA range 2468..2494 mRNA range 2585..2686 mRNA range 3409..3480 mRNA range 3708..3752 mRNA range 3911..3964 mRNA range 4128..4181 mRNA range 4680..4733 mRNA range 4850..4903 mRNA range 5234..5287 mRNA range 5376..5420 mRNA range 5537..5590 mRNA range 5705..5749 mRNA range 5928..5981 mRNA range 6239..6337 mRNA range 6426..6470 mRNA range 6574..6672 mRNA range 6804..6857 mRNA range 7076..7183 mRNA range 7278..7331 mRNA range 7457..7555 mRNA range 7721..7774 mRNA range 7863..7961 mRNA range 8858..8911 mRNA range 9055..9108 mRNA range 9212..9265 mRNA range 9377..9430 mRNA range 9882..9926 mRNA range 10020..10118 mRNA range 10416..10523 mRNA range 10982..11089 mRNA range 11310..11363 mRNA range 11527..11580 mRNA range 11799..11906 mRNA range 11995..12048 mRNA range 12175..12228 mRNA range 12369..12530 mRNA range 12632..12739 mRNA range 12897..13004 mRNA range 13112..13165 mRNA range 13270..13377 mRNA range 13758..13811 mRNA range 13924..14031 mRNA range 14370..14423 mRNA range 14784..14891 mRNA range 14983..15265 mRNA range 15398..15588 mRNA range 15877..16119 mRNA range 16249..17776 CDS range 420..522 CDS range 1986..2180 CDS range 2322..2356 CDS range 2468..2494 CDS range 2585..2686 CDS range 3409..3480 CDS range 3708..3752 CDS range 3911..3964 CDS range 4128..4181 CDS range 4680..4733 CDS range 4850..4903 CDS range 5234..5287 CDS range 5376..5420 CDS range 5537..5590 CDS range 5705..5749 CDS range 5928..5981 CDS range 6239..6337 CDS range 6426..6470 CDS range 6574..6672 CDS range 6804..6857 CDS range 7076..7183 CDS range 7278..7331 CDS range 7457..7555 CDS range 7721..7774 CDS range 7863..7961 CDS range 8858..8911 CDS range 9055..9108 CDS range 9212..9265 CDS range 9377..9430 CDS range 9882..9926 CDS range 10020..10118 CDS range 10416..10523 CDS range 10982..11089 CDS range 11310..11363 CDS range 11527..11580 CDS range 11799..11906 CDS range 11995..12048 CDS range 12175..12228 CDS range 12369..12530 CDS range 12632..12739 CDS range 12897..13004 CDS range 13112..13165 CDS range 13270..13377 CDS range 13758..13811 CDS range 13924..14031 CDS range 14370..14423 CDS range 14784..14891 CDS range 14983..15265 CDS range 15398..15588 CDS range 15877..16119 CDS range 16249..16395 seq_ini = 1 seq_fin = 18609 i = 16395 last codon bas = tg[taa]act last codon lab = EF[DEF]YYY === AF027807 === locus = AF027807 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: gene 1..19855 ignored annotation: /gene="CSN2" ignored annotation: promoter 1..9389 ignored annotation: /gene="CSN2" ignored annotation: TATA_signal 9360..9367 ignored annotation: /gene="CSN2" ignored annotation: exon 9390..9437 ignored annotation: /gene="CSN2" ignored annotation: /number=1 mRNA = 9390..9437,14108..14170,15036..15062,16042..16062,16158..16202,17307..17837,18756..18797,19519..19855 ignored annotation: /gene="CSN2" ignored annotation: /product="beta-casein" ignored annotation: intron 9438..14107 ignored annotation: /gene="CSN2" ignored annotation: /number=1 ignored annotation: exon 14108..14170 ignored annotation: /gene="CSN2" ignored annotation: /number=2 CDS = 14120..14170,15036..15062,16042..16062,16158..16202,17307..17837,18756..18761 ignored annotation: /gene="CSN2" ignored annotation: /codon_start=1 ignored annotation: /product="beta-casein" ignored annotation: /db_xref="PID:g2695661" translation = MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQPQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKSPTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIPQQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV ignored annotation: intron 14171..15035 ignored annotation: /gene="CSN2" ignored annotation: /number=2 ignored annotation: exon 15036..15062 ignored annotation: /gene="CSN2" ignored annotation: /number=3 ignored annotation: intron 15063..16041 ignored annotation: /gene="CSN2" ignored annotation: /number=3 ignored annotation: exon 16042..16062 ignored annotation: /gene="CSN2" ignored annotation: /number=4 ignored annotation: intron 16063..16157 ignored annotation: /gene="CSN2" ignored annotation: /number=4 ignored annotation: exon 16158..16202 ignored annotation: /gene="CSN2" ignored annotation: /number=5 ignored annotation: intron 16203..17306 ignored annotation: /gene="CSN2" ignored annotation: /number=5 ignored annotation: exon 17307..17837 ignored annotation: /gene="CSN2" ignored annotation: /number=6 ignored annotation: intron 17838..18755 ignored annotation: /gene="CSN2" ignored annotation: /number=6 ignored annotation: exon 18756..18797 ignored annotation: /gene="CSN2" ignored annotation: /number=7 ignored annotation: intron 18798..19518 ignored annotation: /gene="CSN2" ignored annotation: /number=7 ignored annotation: exon 19519..19855 ignored annotation: /gene="CSN2" ignored annotation: /number=8 ignored annotation: BASE COUNT 6388 a 3593 c 3125 g 6818 t mRNA range 9390..9437 mRNA range 14108..14170 mRNA range 15036..15062 mRNA range 16042..16062 mRNA range 16158..16202 mRNA range 17307..17837 mRNA range 18756..18797 mRNA range 19519..19855 CDS range 14120..14170 CDS range 15036..15062 CDS range 16042..16062 CDS range 16158..16202 CDS range 17307..17837 CDS range 18756..18761 seq_ini = 1 seq_fin = 19924 i = 18761 last codon bas = tc[taa]gaa last codon lab = EF[DEF]YYY === AF034632 === locus = AF034632 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="13" ignored annotation: /map="13q14-21" mRNA = <1..901,1703..>2040 ignored annotation: /gene="GPR38" ignored annotation: gene <1..>2040 ignored annotation: /gene="GPR38" CDS = 1..901,1703..2040 ignored annotation: /gene="GPR38" ignored annotation: /note="orphan G protein-coupled receptor related to growth ignored annotation: hormone secretagogue and neurotensin receptors" ignored annotation: /codon_start=1 ignored annotation: /product="GPR38" ignored annotation: /db_xref="PID:g2654159" translation = MGSPWNGSDGPEGAREPPWPALPPCDERRCSPFPLGALVPVTAVCLCLFVVGVSGNVVTVMLIGRYRDMRTTTNLYLGSMAVSDLLILLGLPFDLYRLWRSRPWVFGPLLCRLSLYVGEGCTYATLLHMTALSVERYLAICRPLRARVLVTRRRVRALIAVLWAVALLSAGPFLFLVGVEQDPGISVVPGLNGTARIASSPLASSPPLWLSRAPPPSPPSGPETAEAAALFSRECRPSPAQLGALRVMLWVTTAYFFLPFLCLSILYGLIGRELWSSRRPLRGPAASGRERGHRQTVRVLLVVVLAFIICWLPFHVGRIIYINTEDSRMMYFSQYFNIVALQLFYLSASINPILYNLISKKYRAAAFKLLLARKSRPRGFHRSRDTAGEVAGDTGGDTVGYTETSANVKTMG ignored annotation: BASE COUNT 347 a 631 c 598 g 464 t mRNA range 1..901 mRNA range 1703..2040 CDS range 1..901 CDS range 1703..2040 seq_ini = 1 seq_fin = 2040 i = 2040 last codon bas = ga[taa] last codon lab = EF[DEF] === AF037372 === locus = AF037372 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="19" ignored annotation: /map="19q13.1" ignored annotation: /tissue_type="heart" mRNA = 741..826,1464..1550,1673..1757,2185..2297 ignored annotation: /gene="COX7AH" ignored annotation: /product="cytochrome oxidase subunit VIIa-H" ignored annotation: gene 741..2297 ignored annotation: /gene="COX7AH" CDS = 812..826,1464..1550,1673..1757,2185..2237 ignored annotation: /gene="COX7AH" ignored annotation: /codon_start=1 ignored annotation: /product="cytochrome oxidase subunit VIIa-H precursor" ignored annotation: /db_xref="PID:g2708820" translation = MQALRVSQALIRSFSSTARNRFQNRVREKQKLFQEDNDIPLYLKGGIVDNILYRVTMTLCLGGTVYSLYSLGWASFPRN ignored annotation: transit_peptide join(812..826,1464..1511) ignored annotation: /gene="COX7AH" ignored annotation: mat_peptide join(1512..1550,1673..1757,2185..2234) ignored annotation: /gene="COX7AH" ignored annotation: /product="cytochrome oxidase subunit VIIa-H" ignored annotation: BASE COUNT 507 a 710 c 688 g 426 t mRNA range 741..826 mRNA range 1464..1550 mRNA range 1673..1757 mRNA range 2185..2297 CDS range 812..826 CDS range 1464..1550 CDS range 1673..1757 CDS range 2185..2237 seq_ini = 1 seq_fin = 2331 i = 2237 last codon bas = at[taa]gac last codon lab = EF[DEF]YYY === AF039307 === locus = AF039307 ignored annotation: /organism="Homo sapiens" ignored annotation: /strain="ATCC65272" ignored annotation: /db_xref="taxon:9606" ignored annotation: /db_xref="ATCC:65272" ignored annotation: /chromosome="7" ignored annotation: /map="7p15-p14" ignored annotation: /clone="c2A/4.3 (GDB:180620)" mRNA = <1799..2507,3920..>4152 ignored annotation: /gene="HOXA11" ignored annotation: gene <1799..>4152 ignored annotation: /gene="HOXA11" CDS = 1799..2507,3920..4152 ignored annotation: /gene="HOXA11" ignored annotation: /codon_start=1 ignored annotation: /product="homeobox A11" ignored annotation: /db_xref="PID:g2745851" translation = MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL ignored annotation: BASE COUNT 956 a 1230 c 1207 g 929 t mRNA range 1799..2507 mRNA range 3920..4152 CDS range 1799..2507 CDS range 3920..4152 seq_ini = 1 seq_fin = 4322 i = 4152 last codon bas = tc[taa]gac last codon lab = EF[DEF]NNN === AF041427 === locus = AF041427 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Yp, deletion interval 1A1B" ignored annotation: repeat_region complement(9..647) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(651..957) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 1234..1434 ignored annotation: /rpt_family="MLT1" ignored annotation: repeat_region complement(1716..1959) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 3230..3499 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(4615..4663) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(5447..5709) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(5806..5945) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(6416..6701) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 7913..9759 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 8762..8841 ignored annotation: /rpt_family="MER25" ignored annotation: repeat_region 9782..9890 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 11220..11514 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(14178..14425) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(14430..14746) ignored annotation: /rpt_family="MER4" ignored annotation: repeat_region complement(15641..16192) ignored annotation: /rpt_family="PAB" ignored annotation: repeat_region 16442..16568 ignored annotation: /rpt_family="MER4" ignored annotation: repeat_region 16570..16880 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(16940..17180) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 17784..17966 ignored annotation: /rpt_family="MER4" ignored annotation: repeat_region complement(18000..18232) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 18253..18414 ignored annotation: /rpt_family="MER4" ignored annotation: repeat_region complement(18663..18955) ignored annotation: /rpt_family="Alu" ignored annotation: misc_feature 18711..20301 ignored annotation: /note="CpG island" mRNA = <19693..19695,20233..20310,22145..22325,23714..23811,32667..32838,43156..43313,44861..>44962 ignored annotation: /product="ribosomal protein s4 Y isoform" CDS = 19693..19695,20233..20310,22145..22325,23714..23811,32667..32838,43156..43313,44861..44962 ignored annotation: /codon_start=1 ignored annotation: /product="ribosomal protein s4 Y isoform" ignored annotation: /db_xref="PID:g2791859" translation = MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKRLATKQSSG ignored annotation: repeat_region complement(28910..29242) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(31903..32189) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(34206..34493) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(34694..34887) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(35493..35773) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(35827..36758) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 38571..38670 ignored annotation: /rpt_family="MER4" ignored annotation: repeat_region complement(39681..40276) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(43962..44227) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(45347..45448) ignored annotation: /rpt_family="MLT1" ignored annotation: BASE COUNT 12437 a 9045 c 9912 g 14465 t mRNA range 19693..19695 mRNA range 20233..20310 mRNA range 22145..22325 mRNA range 23714..23811 mRNA range 32667..32838 mRNA range 43156..43313 mRNA range 44861..44962 CDS range 19693..19695 CDS range 20233..20310 CDS range 22145..22325 CDS range 23714..23811 CDS range 32667..32838 CDS range 43156..43313 CDS range 44861..44962 seq_ini = 1 seq_fin = 45859 i = 44962 last codon bas = gc[taa]att last codon lab = EF[DEF]NNN === AF042001 === locus = AF042001 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="8" ignored annotation: /map="8q" mRNA = <447..525,1271..1816,2724..>2905 ignored annotation: /gene="SLUG" ignored annotation: /product="zinc finger protein slug" ignored annotation: gene <447..>2905 ignored annotation: /gene="SLUG" CDS = 447..525,1271..1816,2724..2905 ignored annotation: /gene="SLUG" ignored annotation: /note="similar to mouse SLUG protein encoded by GenBank ignored annotation: Accession Number U79550; entire SLUG gene sequence is ignored annotation: contained on cosmid 185D8; cDNA encoded by IMAGE clone ignored annotation: 29339" ignored annotation: /codon_start=1 ignored annotation: /product="zinc finger protein slug" ignored annotation: /db_xref="PID:g2832266" translation = MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSESPISDEEERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH ignored annotation: BASE COUNT 1184 a 863 c 777 g 1210 t mRNA range 447..525 mRNA range 1271..1816 mRNA range 2724..2905 CDS range 447..525 CDS range 1271..1816 CDS range 2724..2905 seq_ini = 1 seq_fin = 4034 i = 2905 last codon bas = ac[tga]gtg last codon lab = EF[DEF]NNN === AF042084 === locus = AF042084 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="10" ignored annotation: /map="10q22" mRNA = 1..1032,1219..1306,1603..1757,1940..2125,2386..2514,2645..2827,3544..3640,4401..4524,4669..4843,5058..5228,5336..5445,5640..5742,5840..>6500 ignored annotation: /product="heparan glucosaminyl ignored annotation: N-deacetylase/N-sulfotransferase-2" CDS = 28..1032,1219..1306,1603..1757,1940..2125,2386..2514,2645..2827,3544..3640,4401..4524,4669..4843,5058..5228,5336..5445,5640..5742,5840..5965 ignored annotation: /codon_start=1 ignored annotation: /product="heparan glucosaminyl ignored annotation: N-deacetylase/N-sulfotransferase-2" ignored annotation: /db_xref="PID:g2792518" translation = MLQLWKVVRPARQLELHRLILLLIAFSLGSMGFLAYYVSTSPKAKEPLPLPLGDCSSGGAAGPGPARPPVPPRPPRPPETARTEPVVLVFVESAYSQLGQEIVAILESSRFRYSTELAPGRGDMPTLTDNTHGRYVLVIYENLLKYVNLDAWSRELLDRYCVEYGVGIIGFFRAHEHSLLSAQLKGFPLFLHSNLGLRDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNHSTYEPVLLASLRPAEPAVPGPVLRRARLPTVVQDLGLHDGIQRVLFGHGLSFWLHKLIFVDAVAYLTGKRLCLDLDRYILVDIDDIFVGKEGTRMKVADVEALLTTQNKLRTLVPNFTFNLGFSGKFYHTGTEEEDAGDDMLLKHRKEFWWFPHMWSHMQPHLFHNRSVLADQMRLNKQFALEHGIPTDLGYAVAPHHSGVYPIHTQLYEAWKSVWGIQVTSTEEYPHLRPARYRRGFIHNGIMVLPRQTCGLFTHTIFYNEYPGGSRELDRSIRGGELFLTVLLNPISIFMTHLSNYGNDRLGLYTFESLVRFLQCWTRLRLQTLPPVPLAQKYFELFPQERSPLWQNPCDDKRHKDIWSKEKTCDRLPKFLIVGPQKTGTTAIHFFLSLHPAVTSSFPSPSTFEEIQFFNSPNYHKGIDWYMDFFPVPSNASTDFLFEKSATYFDSEVVPRRGAALLPRAKIITVLTNPADRAYSWYQHQRAHGDPVALNYTFYQVISASSQTPLALRSLQNRCLVPGYYSTHLQRWLTYYPSGQLLIVDGQELRTNPAASMESIQKFLGITPFLNYTRTLRFDDDKGFWCQGLEGGKTRCLGRSKGRRYPDMDTESRLFLTDFFRNHNLELSKLLSRLGQPVPSWLREELQHSSLG ignored annotation: repeat_region 2892..3182 ignored annotation: /rpt_family="Alu" ignored annotation: /rpt_type=dispersed ignored annotation: repeat_region 3213..3505 ignored annotation: /rpt_family="Alu" ignored annotation: /rpt_type=dispersed ignored annotation: repeat_region 3766..4056 ignored annotation: /rpt_family="Alu" ignored annotation: /rpt_type=dispersed ignored annotation: 3'UTR 5966..>6500 ignored annotation: BASE COUNT 1421 a 1790 c 1586 g 1703 t mRNA range 1..1032 mRNA range 1219..1306 mRNA range 1603..1757 mRNA range 1940..2125 mRNA range 2386..2514 mRNA range 2645..2827 mRNA range 3544..3640 mRNA range 4401..4524 mRNA range 4669..4843 mRNA range 5058..5228 mRNA range 5336..5445 mRNA range 5640..5742 mRNA range 5840..6500 CDS range 28..1032 CDS range 1219..1306 CDS range 1603..1757 CDS range 1940..2125 CDS range 2386..2514 CDS range 2645..2827 CDS range 3544..3640 CDS range 4401..4524 CDS range 4669..4843 CDS range 5058..5228 CDS range 5336..5445 CDS range 5640..5742 CDS range 5840..5965 seq_ini = 1 seq_fin = 6500 i = 5965 last codon bas = gc[tga]tgt last codon lab = EF[DEF]YYY === D49493 === locus = D49493 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon <3490..4235 ignored annotation: /number=1 ignored annotation: 5'UTR <3490..3916 CDS = 3917..4235,13061..13986,15866..16057 ignored annotation: /codon_start=1 ignored annotation: /product="human bone morphogenetic protein-3b" ignored annotation: /db_xref="PID:d1009064" ignored annotation: /db_xref="PID:g699606" translation = MAHVPARTSPGPGPQLLLLLLPLFLLLLRDVAGSHRAPAWSALPAAADGLQGDRDLQRHPGDAAATLGPSAQDMVAVHMHRLYEKYSRQGARPGGGNTVRSFRARLEVVDQKAVYFFNLTSMQDSEMILTATFHFYSEPPRWPRALEVLCKPRAKNASGRPLPLGPPTRQHLLFRSLSQNTATQGLLRGAMALAPPPRGLWQAKDISPIVKAARRDGELLLSAQLDSEERDPGVPRPSPYAPYILVYANDLAISEPNSVAVTLQRYDPFPAGDPEPRAAPNNSADPRVRRAAQATGPLQDNELPGLDERPPRAHAQHFHKHQLWPSPFRALKPRPGRKDRRKKGQEVFMAASQVLDFDEKTMQKARRKQWDEPRVCSRRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFPMPKIVRPSNHATIQSIVRAVGIIPGIPEPCCVPDKMNSLGVLFLDENRNVVLKVYPNMSVDTCACR ignored annotation: intron 4236..13060 ignored annotation: /number=1 ignored annotation: exon 13061..13986 ignored annotation: /number=2 ignored annotation: intron 13987..15865 ignored annotation: /number=2 ignored annotation: exon 15866..>16827 ignored annotation: /number=3 ignored annotation: 3'UTR 16058..>16827 ignored annotation: polyA_signal 16810..16815 ignored annotation: BASE COUNT 4249 a 4374 c 4540 g 4123 t // ** orig/raws/D49493:350: missing "mRNA" entry === D63789 === locus = D63789 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /clone="hg44" ignored annotation: /map="1q23" ignored annotation: /tissue_type="placenta" ignored annotation: TATA_signal 2154..2158 ignored annotation: exon 2197..2278 ignored annotation: /number=1 ignored annotation: prim_transcript 2197..5349 ignored annotation: gene 2218..5230 ignored annotation: /gene="SCM-1beta" CDS = 2218..2278,4075..4189,5062..5230 ignored annotation: /gene="SCM-1beta" ignored annotation: /codon_start=1 ignored annotation: /product="SCM-1beta precursor" ignored annotation: /db_xref="PID:d1010504" ignored annotation: /db_xref="PID:g1754609" translation = MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG ignored annotation: intron 2279..4074 ignored annotation: /gene="SCM-1beta" ignored annotation: /number=1 ignored annotation: exon 4075..4189 ignored annotation: /gene="SCM-1beta" ignored annotation: /number=2 ignored annotation: mat_peptide join(4077..4189,5062..5227) ignored annotation: /gene="SCM-1beta" ignored annotation: intron 4190..5061 ignored annotation: /gene="SCM-1beta" ignored annotation: /number=2 ignored annotation: exon 5062..5349 ignored annotation: /number=3 ignored annotation: BASE COUNT 1702 a 1058 c 1248 g 1661 t // ** orig/raws/D63789:166: missing "mRNA" entry === D63861 === locus = D63861 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="4" ignored annotation: /sex="female" ignored annotation: /tissue_type="placenta" ignored annotation: repeat_region 849..890 ignored annotation: /rpt_family="(GT)n" ignored annotation: /rpt_unit=849..850 ignored annotation: repeat_unit 951..1266 ignored annotation: /note="negative orientation" ignored annotation: /rpt_family="Alu" ignored annotation: protein_bind 1447..1453 ignored annotation: /bound_moiety="Ap1" ignored annotation: misc_feature 1681..1688 ignored annotation: /note="E box for transcription factor binding site" ignored annotation: protein_bind 1752..1757 ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1759..1767 ignored annotation: /bound_moiety="EF1A" ignored annotation: protein_bind 1792..1800 ignored annotation: /bound_moiety="EF1A" ignored annotation: prim_transcript 1829..16065 ignored annotation: /note="cyclophilin 40 precursor mRNA" ignored annotation: protein_bind 1851..1856 ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1860..1865 ignored annotation: /bound_moiety="Sp1" ignored annotation: exon 1913..1997 ignored annotation: /gene="hCyP40" ignored annotation: /number=1 ignored annotation: gene 1913..15456 ignored annotation: /gene="hCyP40" CDS = 1913..1997,3718..3858,5910..6016,7996..8184,9511..9633,9792..9898,11934..12075,14346..14432,14524..14566,15368..15456 ignored annotation: /gene="hCyP40" ignored annotation: /codon_start=1 ignored annotation: /product="cyclophilin 40" ignored annotation: /db_xref="PID:d1010571" ignored annotation: /db_xref="PID:g1769812" translation = MSHPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELKEGDDGGIFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRYVDSSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKALYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMFA ignored annotation: intron 1998..3717 ignored annotation: /gene="hCyP40" ignored annotation: /number=1 ignored annotation: protein_bind 2004..2023 ignored annotation: /gene="hCyP40" ignored annotation: /bound_moiety="HSF" ignored annotation: protein_bind 2039..2047 ignored annotation: /gene="hCyP40" ignored annotation: /bound_moiety="NF-kappaB" ignored annotation: protein_bind 2057..2065 ignored annotation: /gene="hCyP40" ignored annotation: /bound_moiety="NF-kappaB" ignored annotation: protein_bind 2068..2073 ignored annotation: /gene="hCyP40" ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 2388..2397 ignored annotation: /gene="hCyP40" ignored annotation: /bound_moiety="NF-muE3" ignored annotation: exon 3718..3858 ignored annotation: /gene="hCyP40" ignored annotation: /number=2 ignored annotation: intron 3859..5909 ignored annotation: /gene="hCyP40" ignored annotation: /number=2 ignored annotation: repeat_unit 4188..4499 ignored annotation: /gene="hCyP40" ignored annotation: /note="positive orientation" ignored annotation: /rpt_family="Alu" ignored annotation: exon 5910..6016 ignored annotation: /gene="hCyP40" ignored annotation: /number=3 ignored annotation: intron 6017..7995 ignored annotation: /gene="hCyP40" ignored annotation: /number=3 ignored annotation: exon 7996..8184 ignored annotation: /gene="hCyP40" ignored annotation: /number=4 ignored annotation: intron 8185..9510 ignored annotation: /gene="hCyP40" ignored annotation: /number=4 ignored annotation: repeat_unit 8233..8518 ignored annotation: /gene="hCyP40" ignored annotation: /note="negative orientation" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 8971..9108 ignored annotation: /gene="hCyP40" ignored annotation: /note="positive orientation" ignored annotation: /rpt_family="Alu" ignored annotation: exon 9511..9533 ignored annotation: /gene="hCyP40" ignored annotation: /number=5 ignored annotation: intron 9634..9791 ignored annotation: /gene="hCyP40" ignored annotation: /number=5 ignored annotation: exon 9792..9898 ignored annotation: /gene="hCyP40" ignored annotation: /number=6 ignored annotation: intron 9899..11933 ignored annotation: /gene="hCyP40" ignored annotation: /number=6 ignored annotation: repeat_unit 10305..10602 ignored annotation: /gene="hCyP40" ignored annotation: /note="positive orientation" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 11162..11273 ignored annotation: /gene="hCyP40" ignored annotation: /note="negative orientation" ignored annotation: /rpt_family="Alu" ignored annotation: exon 11934..12075 ignored annotation: /gene="hCyP40" ignored annotation: /number=7 ignored annotation: intron 12076..14345 ignored annotation: /gene="hCyP40" ignored annotation: /number=7 ignored annotation: repeat_unit 12415..12709 ignored annotation: /gene="hCyP40" ignored annotation: /note="negative orientation" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 13242..13510 ignored annotation: /gene="hCyP40" ignored annotation: /note="negative orientation" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 13668..13970 ignored annotation: /gene="hCyP40" ignored annotation: /note="positive orientation" ignored annotation: /rpt_family="Alu" ignored annotation: exon 14346..14432 ignored annotation: /gene="hCyP40" ignored annotation: /number=8 ignored annotation: intron 14433..14523 ignored annotation: /gene="hCyP40" ignored annotation: /number=8 ignored annotation: exon 14524..14566 ignored annotation: /gene="hCyP40" ignored annotation: /number=9 ignored annotation: intron 14567..15367 ignored annotation: /gene="hCyP40" ignored annotation: /number=9 ignored annotation: exon 15368..16065 ignored annotation: /number=10 ignored annotation: polyA_signal 15612..15617 ignored annotation: repeat_unit 15645..15946 ignored annotation: /note="negative orientaion" ignored annotation: /rpt_family="Alu" ignored annotation: polyA_signal 16038..16043 ignored annotation: BASE COUNT 5025 a 3083 c 3658 g 5367 t // ** orig/raws/D63861:473: missing "mRNA" entry === D67013 === locus = D67013 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: promoter 1..361 ignored annotation: /note="AHSG promoter region" ignored annotation: CAAT_signal 269..273 ignored annotation: TATA_signal 296..303 ignored annotation: exon 362..622 ignored annotation: /number=1 ignored annotation: 5'UTR <362..409 CDS = 410..622,2952..3062,3710..3794,4454..4617,5805..5906,7126..7209,7854..8198 ignored annotation: /note="AHSG" ignored annotation: /codon_start=1 ignored annotation: /product="alpha2-HS glycoprotein" ignored annotation: /db_xref="PID:d1023520" ignored annotation: /db_xref="PID:g2521983" translation = MKSLVLLLCLAQLWGWHSAPHGPGLIYRQPNCDDPETEEAALVAIDYINQNLPWGYKHTLNQIDEVKVWPQQPSGELFEIEIDTLETTCHVLDPTPVARCSVRQLKEHAVEGDCDFQLLKLDGKFSVVYAKCDSSPDSAEDVRKVCQDCPLLAPLNDTRVVHAAKAALAAFNAQNNGSNFQLEEISRAQLVPLPPSTYVEFTVCGTDCVAKEATEAAKCNLLAEKQYGFCKATLSEKLGGAEVAVTCTVFQTQPVTSQPQPEGANEAVPTPVVDPDAPPSPPLGAPGLPPAGSPPDSHVLLAAPPGHQLHRAHYDLRHTFMGVVSLGSPSGEVSHPRKTRTVVQPSVGAAAGPVVPPCPGRIRHFKV ignored annotation: intron 623..2951 ignored annotation: /number=1 ignored annotation: exon 2952..3062 ignored annotation: /number=2 ignored annotation: intron 3063..3709 ignored annotation: /number=2 ignored annotation: exon 3710..3794 ignored annotation: /number=3 ignored annotation: intron 3795..4453 ignored annotation: /number=3 ignored annotation: exon 4454..4617 ignored annotation: /number=4 ignored annotation: intron 4618..5804 ignored annotation: /number=4 ignored annotation: exon 5805..5906 ignored annotation: /number=5 ignored annotation: intron 5907..7125 ignored annotation: /number=5 ignored annotation: exon 7126..7209 ignored annotation: /number=6 ignored annotation: intron 7210..7853 ignored annotation: /number=6 ignored annotation: exon 7854..8584 ignored annotation: /number=7 ignored annotation: 3'UTR 8199..8584 ignored annotation: polyA_signal 8564..8569 ignored annotation: 3'clip 8585..8748 ignored annotation: BASE COUNT 2424 a 2070 c 2114 g 2140 t // ** orig/raws/D67013:224: missing "mRNA" entry === D83195 === locus = D83195 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="16" ignored annotation: /map="16p13.3" ignored annotation: exon <951..1091 ignored annotation: /number=1 ignored annotation: intron 1092..1419 ignored annotation: /number=1 ignored annotation: GC_signal 1204..1209 ignored annotation: GC_signal complement(1295..1300) ignored annotation: exon 1420..1567 ignored annotation: /number=2 ignored annotation: sig_peptide 1421..1486 ignored annotation: /gene="DNASE1" ignored annotation: gene 1421..3944 ignored annotation: /gene="DNASE1" CDS = 1421..1567,1896..1984,2149..2232,2628..2743,2989..3101,3177..3331,3711..3807,3897..3944 ignored annotation: /gene="DNASE1" ignored annotation: /EC_number="3.1.21.1" ignored annotation: /codon_start=1 ignored annotation: /product="deoxyribonuclease I precursor" ignored annotation: /db_xref="PID:d1012508" ignored annotation: /db_xref="PID:g1197173" translation = MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAGMLLQGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK ignored annotation: mat_peptide join(1487..1567,1896..1984,2149..2232,2628..2743, ignored annotation: 2989..3101,3177..3331,3711..3807,3897..3941) ignored annotation: /gene="DNASE1" ignored annotation: /product="deoxyribonuclease I" ignored annotation: gene 1511 ignored annotation: /gene="DNASE1*4" ignored annotation: allele 1511 ignored annotation: /gene="DNASE1*4" ignored annotation: /citation=[4] ignored annotation: /frequency="0.0012" ignored annotation: /replace="g" ignored annotation: intron 1568..1895 ignored annotation: /gene="DNASE1" ignored annotation: /number=2 ignored annotation: exon 1896..1984 ignored annotation: /gene="DNASE1" ignored annotation: /number=3 ignored annotation: intron 1985..2148 ignored annotation: /gene="DNASE1" ignored annotation: /number=3 ignored annotation: exon 2149..2232 ignored annotation: /gene="DNASE1" ignored annotation: /number=4 ignored annotation: intron 2233..2627 ignored annotation: /gene="DNASE1" ignored annotation: /number=4 ignored annotation: exon 2628..2743 ignored annotation: /gene="DNASE1" ignored annotation: /number=5 ignored annotation: intron 2744..2988 ignored annotation: /gene="DNASE1" ignored annotation: /number=5 ignored annotation: exon 2989..3101 ignored annotation: /gene="DNASE1" ignored annotation: /number=6 ignored annotation: gene 3012 ignored annotation: /gene="DNASE1*3" ignored annotation: allele 3012 ignored annotation: /gene="DNASE1*3" ignored annotation: /citation=[3] ignored annotation: /frequency="0.0116" ignored annotation: /replace="g" ignored annotation: intron 3102..3176 ignored annotation: /gene="DNASE1" ignored annotation: /number=6 ignored annotation: exon 3177..3331 ignored annotation: /gene="DNASE1" ignored annotation: /number=7 ignored annotation: intron 3332..3710 ignored annotation: /gene="DNASE1" ignored annotation: /number=7 ignored annotation: gene 3398 ignored annotation: /gene="DNASE1*1978G" ignored annotation: allele 3398 ignored annotation: /gene="DNASE1*1978G" ignored annotation: /frequency="0.68" ignored annotation: /replace="c" ignored annotation: exon 3711..3807 ignored annotation: /gene="DNASE1" ignored annotation: /number=8 ignored annotation: allele 3737 ignored annotation: /gene="DNASE1*2" ignored annotation: /citation=[2] ignored annotation: /frequency="0.4369" ignored annotation: /replace="g" ignored annotation: gene 3737 ignored annotation: /gene="DNASE1*2" ignored annotation: intron 3808..3896 ignored annotation: /gene="DNASE1" ignored annotation: /number=8 ignored annotation: exon 3897..>4066 ignored annotation: /number=9 ignored annotation: polyA_signal 4060..4065 ignored annotation: BASE COUNT 956 a 1347 c 1312 g 977 t // ** orig/raws/D83195:238: missing "mRNA" entry === D83657 === locus = D83657 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /dev_stage="adlut" ignored annotation: /map="1q21.2-q22" ignored annotation: TATA_signal 1971..1976 ignored annotation: exon 2001..2048 ignored annotation: /number=1 ignored annotation: intron 2049..2985 ignored annotation: /number=1 ignored annotation: exon 2986..3143 ignored annotation: /number=2 CDS = 3006..3143,3631..3771 ignored annotation: /codon_start=1 ignored annotation: /product="CAAF1 (calcium-binding protein in amniotic fluid ignored annotation: 1)" ignored annotation: /db_xref="PID:d1012700" ignored annotation: /db_xref="PID:g1502285" translation = MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHKE ignored annotation: intron 3144..3630 ignored annotation: /number=2 ignored annotation: exon 3631..3890 ignored annotation: /number=3 ignored annotation: polyA_signal 3868..3873 ignored annotation: BASE COUNT 1091 a 942 c 958 g 1101 t // ** orig/raws/D83657:128: missing "mRNA" entry === D84344S3 === locus = D84344S3 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocytes" ignored annotation: /clone_lib="EMBL3" ignored annotation: /tissue_type="peripheral blood" ignored annotation: intron <1..64 ignored annotation: /number=1 ignored annotation: exon 65..256 ignored annotation: /number=2 CDS = 77..256,368..545,842..944,1275..1419 ignored annotation: /codon_start=1 ignored annotation: /product="SM22 alpha" ignored annotation: /db_xref="PID:d1022696" ignored annotation: /db_xref="PID:g2340833" translation = MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS ignored annotation: intron 257..367 ignored annotation: /number=2 ignored annotation: exon 368..545 ignored annotation: /number=3 ignored annotation: intron 546..841 ignored annotation: /number=3 ignored annotation: exon 842..944 ignored annotation: /number=4 ignored annotation: intron 945..1274 ignored annotation: /number=4 ignored annotation: exon 1275..1822 ignored annotation: /number=5 ignored annotation: BASE COUNT 390 a 497 c 558 g 377 t // ** orig/raws/D84344S3:94: missing "mRNA" entry === D85429 === locus = D85429 ignored annotation: /organism="Homo sapiens" ignored annotation: /sub_species="Japanese" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="19" ignored annotation: /clone="Hsp40-No4" ignored annotation: /map="19p13.2" ignored annotation: /tissue_type="placenta" ignored annotation: CAAT_signal complement(1859..1863) ignored annotation: misc_feature 1878..1887 ignored annotation: /note="Sp1 binding site" ignored annotation: misc_feature 1945..1954 ignored annotation: /note="Sp1 binding site" ignored annotation: CAAT_signal complement(2024..2028) ignored annotation: misc_feature 2054..2068 ignored annotation: /note="heat shock element 1" ignored annotation: misc_feature 2079..2093 ignored annotation: /note="heat shock element 2" ignored annotation: TATA_signal 2104..2109 ignored annotation: exon 2140..2390 ignored annotation: /number=1 ignored annotation: gene 2180..4589 ignored annotation: /gene="HSPF1" CDS = 2180..2390,3483..4063,4359..4589 ignored annotation: /gene="HSPF1" ignored annotation: /note="Hsp40" ignored annotation: /codon_start=1 ignored annotation: /product="heat shock protein 40" ignored annotation: /db_xref="PID:d1013503" ignored annotation: /db_xref="PID:g1816452" translation = MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSGFPMGMGGFTNVNFGRSRSAQEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI ignored annotation: intron 2391..3482 ignored annotation: /gene="HSPF1" ignored annotation: /number=1 ignored annotation: CAAT_signal complement(2543..2547) ignored annotation: /gene="HSPF1" ignored annotation: misc_feature 2592..2606 ignored annotation: /gene="HSPF1" ignored annotation: /note="heat shock element 3" ignored annotation: exon 3483..4063 ignored annotation: /gene="HSPF1" ignored annotation: /number=2 ignored annotation: intron 4064..4358 ignored annotation: /gene="HSPF1" ignored annotation: /number=2 ignored annotation: exon 4359..5760 ignored annotation: /number=3 ignored annotation: BASE COUNT 1591 a 1884 c 2111 g 1660 t // ** orig/raws/D85429:208: missing "mRNA" entry === D86992 === locus = D86992 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /clone="123E1, upstream contig" ignored annotation: /clone_lib="specific cosmid library; LL22NC03" ignored annotation: /map="22q11.2" ignored annotation: /tissue_type="human/rodent somatic cell hybrid" ignored annotation: misc_feature 1..24132 ignored annotation: /note="itv-region III" ignored annotation: exon 18391..18436 ignored annotation: /gene="VpreB" ignored annotation: /number=1 ignored annotation: gene 18391..18914 ignored annotation: /gene="VpreB" CDS = 18391..18436,18523..18914 ignored annotation: /gene="VpreB" ignored annotation: /standard_name="immunoglobulin lambda gene" ignored annotation: /codon_start=1 ignored annotation: /product="immunoglobulin light chain" ignored annotation: /db_xref="PID:d1020781" ignored annotation: /db_xref="PID:g2114213" translation = MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSSEKEEREREWEEEMEPTAARTRVP ignored annotation: exon 18523..18914 ignored annotation: /gene="VpreB" ignored annotation: /number=2 ignored annotation: BASE COUNT 6219 a 5791 c 5738 g 6384 t // ** orig/raws/D86992:462: missing "mRNA" entry === D87675 === locus = D87675 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="2Fur" ignored annotation: /chromosome="21" ignored annotation: /clone_lib="P1" ignored annotation: /map="21q21.1" ignored annotation: exon 9001..9204 ignored annotation: /number=1 ignored annotation: gene 9148..294603 ignored annotation: /gene="APP" CDS = 9148..9204,64121..64288,86196..86325,122920..123032,125075..125268,154226..154428,176087..176254,178853..178909,193794..193927,200243..200317,201043..201201,220515..220643,221581..221680,264310..264531,271195..271248,278599..278699,284404..284550,294502..294603 ignored annotation: /gene="APP" ignored annotation: /codon_start=1 ignored annotation: /product="amyloid precursor protein" ignored annotation: /db_xref="PID:d1023126" ignored annotation: /db_xref="PID:g2429081" translation = MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSAMSQSLLKTTQEPLARDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN ignored annotation: intron 9205..64120 ignored annotation: /gene="APP" ignored annotation: /number=1 ignored annotation: exon 64121..64288 ignored annotation: /gene="APP" ignored annotation: /number=2 ignored annotation: intron 64289..86195 ignored annotation: /gene="APP" ignored annotation: /number=2 ignored annotation: exon 86196..86325 ignored annotation: /gene="APP" ignored annotation: /number=3 ignored annotation: intron 86326..122919 ignored annotation: /gene="APP" ignored annotation: /number=3 ignored annotation: exon 122920..123032 ignored annotation: /gene="APP" ignored annotation: /number=4 ignored annotation: intron 123033..125074 ignored annotation: /gene="APP" ignored annotation: /number=4 ignored annotation: exon 125075..125268 ignored annotation: /gene="APP" ignored annotation: /number=5 ignored annotation: intron 125269..154225 ignored annotation: /gene="APP" ignored annotation: /number=5 ignored annotation: exon 154226..154428 ignored annotation: /gene="APP" ignored annotation: /number=6 ignored annotation: intron 154429..176086 ignored annotation: /gene="APP" ignored annotation: /number=6 ignored annotation: exon 176087..176254 ignored annotation: /gene="APP" ignored annotation: /number=7 ignored annotation: intron 176255..178852 ignored annotation: /gene="APP" ignored annotation: /number=7 ignored annotation: exon 178853..178909 ignored annotation: /gene="APP" ignored annotation: /number=8 ignored annotation: intron 178910..193793 ignored annotation: /gene="APP" ignored annotation: /number=8 ignored annotation: exon 193794..193927 ignored annotation: /gene="APP" ignored annotation: /number=9 ignored annotation: intron 193928..200242 ignored annotation: /gene="APP" ignored annotation: /number=9 ignored annotation: exon 200243..200317 ignored annotation: /gene="APP" ignored annotation: /number=10 ignored annotation: intron 200318..201042 ignored annotation: /gene="APP" ignored annotation: /number=10 ignored annotation: exon 201043..201201 ignored annotation: /gene="APP" ignored annotation: /number=11 ignored annotation: intron 201202..220514 ignored annotation: /gene="APP" ignored annotation: /number=11 ignored annotation: exon 220515..220643 ignored annotation: /gene="APP" ignored annotation: /number=12 ignored annotation: intron 220644..221580 ignored annotation: /gene="APP" ignored annotation: /number=12 ignored annotation: exon 221581..221680 ignored annotation: /gene="APP" ignored annotation: /number=13 ignored annotation: intron 221681..264309 ignored annotation: /gene="APP" ignored annotation: /number=13 ignored annotation: exon 264310..264531 ignored annotation: /gene="APP" ignored annotation: /number=14 ignored annotation: intron 264532..271194 ignored annotation: /gene="APP" ignored annotation: /number=14 ignored annotation: exon 271195..271248 ignored annotation: /gene="APP" ignored annotation: /number=15 ignored annotation: intron 271249..278598 ignored annotation: /gene="APP" ignored annotation: /number=15 ignored annotation: exon 278599..278699 ignored annotation: /gene="APP" ignored annotation: /number=16 ignored annotation: intron 278700..284403 ignored annotation: /gene="APP" ignored annotation: /number=16 ignored annotation: exon 284404..284550 ignored annotation: /gene="APP" ignored annotation: /number=17 ignored annotation: intron 284551..294501 ignored annotation: /gene="APP" ignored annotation: /number=17 ignored annotation: exon 294502..295722 ignored annotation: /number=18 ignored annotation: BASE COUNT 85134 a 59131 c 61215 g 96212 t // ** orig/raws/D87675:5198: missing "mRNA" entry === D88010 === locus = D88010 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon <1..48 CDS = 26..48,190..238,421..499,2040..2209,2466..2566,3196..3229 ignored annotation: /codon_start=1 ignored annotation: /product="ribosomal protein S13" ignored annotation: /db_xref="PID:d1014222" ignored annotation: /db_xref="PID:g1754633" translation = MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA ignored annotation: intron 49..189 ignored annotation: exon 190..238 ignored annotation: intron 239..420 ignored annotation: exon 421..499 ignored annotation: intron 500..2039 ignored annotation: repeat_region 1200..1490 ignored annotation: snRNA 1795..1885 ignored annotation: /note="snoRNA, U14-S13-3" ignored annotation: /product="U14 small nucleolar RNA" ignored annotation: exon 2040..2209 ignored annotation: intron 2210..2465 ignored annotation: exon 2466..2566 ignored annotation: intron 2567..3195 ignored annotation: snRNA 2919..3010 ignored annotation: /note="sno RNA, U14-S13-5" ignored annotation: /product="U14 small nucleolar RNA" ignored annotation: exon 3196..3270 ignored annotation: polyA_signal 3250..3255 ignored annotation: BASE COUNT 800 a 714 c 787 g 964 t 5 others 1561 ctcttaaaag gggnaggggg ntcgcnnaaa aanctgtaca ccggagcttg gagtctaatt ** orig/raws/D88010:91: invalid base letter "n" === D89060 === locus = D89060 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" CDS = 136..340,548..658,5359..5445,5767..5870,6012..6106,6840..6933,7175..7323,7774..7921,8578..8698,8823..8929,9022..9171 ignored annotation: /note="48kDa" ignored annotation: /codon_start=1 ignored annotation: /product="oligosaccharyltransferase" ignored annotation: /db_xref="PID:d1024551" ignored annotation: /db_xref="PID:g2662375" translation = MGYFRCAGAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETHSLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKNTLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVFKEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNAKWVPFDGDDIQLEFVRIDPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYERFIPSAYPYYASAFPMMLGLFIFSIVFLHMKEKEKSD ignored annotation: exon 136..340 ignored annotation: /number=1 ignored annotation: intron 341..547 ignored annotation: /number=1 ignored annotation: exon 548..658 ignored annotation: /number=2 ignored annotation: intron 659..5358 ignored annotation: /number=2 ignored annotation: exon 5359..5445 ignored annotation: /number=3 ignored annotation: intron 5446..5766 ignored annotation: /number=3 ignored annotation: exon 5767..5870 ignored annotation: /number=4 ignored annotation: intron 5871..6011 ignored annotation: /number=4 ignored annotation: exon 6012..6106 ignored annotation: /number=5 ignored annotation: intron 6107..6839 ignored annotation: /number=5 ignored annotation: exon 6840..6933 ignored annotation: /number=6 ignored annotation: intron 6934..7174 ignored annotation: /number=6 ignored annotation: exon 7175..7323 ignored annotation: /number=7 ignored annotation: intron 7324..7773 ignored annotation: /number=7 ignored annotation: exon 7774..7921 ignored annotation: /number=8 ignored annotation: intron 7922..8577 ignored annotation: /number=8 ignored annotation: exon 8578..8698 ignored annotation: /number=9 ignored annotation: intron 8699..8822 ignored annotation: /number=9 ignored annotation: exon 8823..8929 ignored annotation: /number=10 ignored annotation: intron 8930..9021 ignored annotation: /number=10 ignored annotation: exon 9022..9171 ignored annotation: /number=11 ignored annotation: BASE COUNT 2278 a 2383 c 2621 g 2554 t // ** orig/raws/D89060:253: missing "mRNA" entry === D89501 === locus = D89501 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 636..723 ignored annotation: /number=1 ignored annotation: intron 724..1982 ignored annotation: /number=1 ignored annotation: exon 1983..2050 ignored annotation: /number=2 ignored annotation: gene 1997..6874 ignored annotation: /gene="PBI" CDS = 1997..2050,6524..6874 ignored annotation: /gene="PBI" ignored annotation: /note="similar to salivary proline-rich protein P-B" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:d1014669" ignored annotation: /db_xref="PID:g1854452" translation = MKSLTWILGLWALAACFTPGESQRGPRGPYPPGPLAPPPPPRFPFGTGFVPPPHPPPYGPGRFPPPLSPPYGPGRIPPSPPPPYGPGRIQSHSLPPPYGPGYPQPPSQPRPYPPGPPFFPVNSPTDPALPTLAP ignored annotation: intron 2051..6523 ignored annotation: /gene="PBI" ignored annotation: /number=2 ignored annotation: exon 6524..7031 ignored annotation: /number=3 ignored annotation: BASE COUNT 2351 a 1397 c 1209 g 2244 t // ** orig/raws/D89501:178: missing "mRNA" entry === HS1D3HLH === locus = HS1D3HLH ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /germline ignored annotation: /tissue_type="peripheral blood" ignored annotation: /cell_type="lymphocytes" ignored annotation: /clone="cos 5 Hind III fragment" ignored annotation: /clone_lib="pcos2embl" ignored annotation: /map="1q36.1" ignored annotation: /chromosome="1" ignored annotation: variation 584 ignored annotation: /note="g/a polymorphism" ignored annotation: TATA_signal 636..640 ignored annotation: exon 665..1038 ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: gene 739..1205 ignored annotation: /gene="Id3" CDS = 739..1038,1146..1205 ignored annotation: /gene="Id3" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /db_xref="PID:g313213" ignored annotation: /db_xref="SWISS-PROT:Q02535" translation = MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDKRSFCH ignored annotation: intron 1039..1145 ignored annotation: /gene="Id3" ignored annotation: /number=1 ignored annotation: exon 1146..1219 ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: intron 1220..1739 ignored annotation: /number=2 ignored annotation: exon 1740..2190 ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: misc_feature 2123..2129 ignored annotation: /note="immediate early motif" ignored annotation: polyA_signal 2173..2178 ignored annotation: BASE COUNT 521 a 662 c 699 g 599 t // ** orig/raws/HS1D3HLH:109: missing "mRNA" entry === HS370M22 === locus = HS370M22 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /map="22q12-qter" ignored annotation: /clone="370M22" ignored annotation: /clone_lib="RPCI3" ignored annotation: repeat_region 1093..1122 ignored annotation: /note="15 copies of 2 mer 90 % conserved" ignored annotation: repeat_region 1495..1797 ignored annotation: /note="AluSp repeat: matches 1..303 of consensus" ignored annotation: repeat_region 2171..2375 ignored annotation: /note="AluJo repeat: matches 100..302 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 2443..2519 ignored annotation: /note="MIR repeat: matches 191..260 of consensus" ignored annotation: repeat_region 2664..2966 ignored annotation: /note="AluSp repeat: matches 1..303 of consensus" ignored annotation: repeat_region 3146..4279 ignored annotation: /note="TIGGER1 repeat: matches 2418..1298 of consensus" ignored annotation: repeat_region 4273..5430 ignored annotation: /note="TIGGER1 repeat: matches 1172..1 of consensus" ignored annotation: repeat_region 6761..7062 ignored annotation: /note="AluSx repeat: matches 1..302 of consensus" ignored annotation: repeat_region 7771..8069 ignored annotation: /note="AluSc repeat: matches 1..299 of consensus" ignored annotation: repeat_region 8289..8692 ignored annotation: /note="MLT1A1 repeat: matches 3..365 of consensus" ignored annotation: repeat_region 8919..8993 ignored annotation: /note="MIR repeat: matches 64..139 of consensus" ignored annotation: repeat_region 10022..10149 ignored annotation: /note="MIR2 repeat: matches 1..131 of consensus" ignored annotation: repeat_region 10152..10411 ignored annotation: /note="AluSx repeat: matches 40..299 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 11784..11920 ignored annotation: /note="MIR2 repeat: matches 146..5 of consensus" ignored annotation: repeat_region 12411..12704 ignored annotation: /note="AluY repeat: matches 293..1 of consensus" ignored annotation: repeat_region 13230..13305 ignored annotation: /note="AluSp repeat: matches 218..293 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 14003..14383 ignored annotation: /note="L1 repeat: matches 5005..5390 of consensus" ignored annotation: repeat_region 14238..15135 ignored annotation: /note="L1PA15 repeat: matches 1..904 of consensus" ignored annotation: repeat_region 15486..15509 ignored annotation: /note="6 copies of 4 mer 100 % conserved" ignored annotation: repeat_region 15511..15810 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 16405..16692 ignored annotation: /note="AluJo repeat: matches 13..302 of consensus" ignored annotation: repeat_region 16693..16724 ignored annotation: /note="8 copies of 4 mer 97 % conserved" ignored annotation: repeat_region 16879..16980 ignored annotation: /note="MIR repeat: matches 188..74 of consensus" ignored annotation: repeat_region 18353..18613 ignored annotation: /note="AluJo repeat: matches 299..1 of consensus" ignored annotation: repeat_region 19394..19747 ignored annotation: /note="THE1B repeat: matches 364..1 of consensus" ignored annotation: repeat_region 19832..19904 ignored annotation: /note="7SK repeat: matches 193..121 of consensus" ignored annotation: repeat_region 19942..20004 ignored annotation: /note="7SK repeat: matches 124..62 of consensus" ignored annotation: repeat_region 20085..20281 ignored annotation: /note="L1 repeat: matches 5190..5387 of consensus" ignored annotation: repeat_region 20137..20812 ignored annotation: /note="L1MB8 repeat: matches 1..729 of consensus" ignored annotation: exon <20814..21617 ignored annotation: /note="match: P47985" ignored annotation: /product="UQCRFS1" ignored annotation: misc_feature 21614..21904 ignored annotation: /note="match: STS G13234" ignored annotation: repeat_region 22036..22213 ignored annotation: /note="L1ME2 repeat: matches 710..902 of consensus" ignored annotation: repeat_region 22368..22434 ignored annotation: /note="MIR2 repeat: matches 144..76 of consensus" ignored annotation: repeat_region 24469..24679 ignored annotation: /note="L1 repeat: matches 5137..5350 of consensus" ignored annotation: repeat_region 24576..24682 ignored annotation: /note="L1MC1 repeat: matches 5..113 of consensus" ignored annotation: repeat_region 24683..24984 ignored annotation: /note="AluY repeat: matches 1..301 of consensus" ignored annotation: repeat_region 24986..25447 ignored annotation: /note="L1MC3 repeat: matches 100..572 of consensus" ignored annotation: repeat_region 25448..25719 ignored annotation: /note="AluJo repeat: matches 1..267 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 25728..26165 ignored annotation: /note="L1MC2 repeat: matches 639..1077 of consensus" ignored annotation: repeat_region 26374..26597 ignored annotation: /note="MIR repeat: matches 1..234 of consensus" ignored annotation: repeat_region 27032..27165 ignored annotation: /note="MIR2 repeat: matches 128..2 of consensus" ignored annotation: repeat_region 28225..28525 ignored annotation: /note="AluSg repeat: matches 1..300 of consensus" ignored annotation: repeat_region 29230..29375 ignored annotation: /note="AluY repeat: matches 155..301 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 29383..29450 ignored annotation: /note="L1 repeat: matches 4369..4440 of consensus" ignored annotation: repeat_region 29493..29659 ignored annotation: /note="L1 repeat: matches 4425..4590 of consensus" ignored annotation: repeat_region 29682..29981 ignored annotation: /note="AluSx repeat: matches 299..1 of consensus" ignored annotation: repeat_region 30073..30758 ignored annotation: /note="L1 repeat: matches 4687..5390 of consensus" ignored annotation: repeat_region 30616..31458 ignored annotation: /note="L1MB5 repeat: matches 1..896 of consensus" ignored annotation: repeat_region 31493..31559 ignored annotation: /note="L1ME1 repeat: matches 844..910 of consensus" ignored annotation: repeat_region 31583..32083 ignored annotation: /note="L1MC2 repeat: matches 561..1077 of consensus" ignored annotation: repeat_region 32716..32876 ignored annotation: /note="FAM repeat: matches 161..1 of consensus" ignored annotation: repeat_region 33765..33935 ignored annotation: /note="AluJo repeat: matches 302..135 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 33936..34227 ignored annotation: /note="AluSg repeat: matches 292..1 of consensus" ignored annotation: repeat_region 34229..34354 ignored annotation: /note="AluJb repeat: matches 143..19 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 35317..35619 ignored annotation: /note="AluSx repeat: matches 1..302 of consensus" ignored annotation: repeat_region 35620..35667 ignored annotation: /note="12 copies of 4 mer 88 % conserved" ignored annotation: repeat_region 36768..36899 ignored annotation: /note="MIR2 repeat: matches 1..135 of consensus" ignored annotation: repeat_region 36978..37103 ignored annotation: /note="FLAM_A repeat: matches 130..5 of consensus" ignored annotation: repeat_region 37123..37421 ignored annotation: /note="AluSx repeat: matches 298..1 of consensus" ignored annotation: repeat_region 37432..37484 ignored annotation: /note="FLAM repeat: matches 126..72 of consensus" ignored annotation: repeat_region 38450..38534 ignored annotation: /note="MIR2 repeat: matches 146..60 of consensus" ignored annotation: repeat_region 39764..40023 ignored annotation: /note="L1PA2 repeat: matches 584..843 of consensus" ignored annotation: repeat_region 41080..41162 ignored annotation: /note="MIR repeat: matches 206..119 of consensus" ignored annotation: repeat_region 41173..41227 ignored annotation: /note="MIR2 repeat: matches 146..87 of consensus" ignored annotation: repeat_region 43019..43321 ignored annotation: /note="AluSp repeat: matches 303..1 of consensus" ignored annotation: repeat_region 43807..43939 ignored annotation: /note="MIR2 repeat: matches 11..145 of consensus" ignored annotation: repeat_region 44033..44334 ignored annotation: /note="AluSx repeat: matches 1..302 of consensus" ignored annotation: repeat_region 45203..45499 ignored annotation: /note="AluSq repeat: matches 1..294 of consensus" ignored annotation: 5'UTR join(46642..46832,92595..92608) ignored annotation: /note="GRB2L" ignored annotation: repeat_region 48291..48350 ignored annotation: /note="MIR repeat: matches 159..216 of consensus" ignored annotation: repeat_region 48870..48934 ignored annotation: /note="AluSx repeat: matches 1..65 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 48978..49278 ignored annotation: /note="AluJb repeat: matches 302..1 of consensus" ignored annotation: repeat_region 49337..49391 ignored annotation: /note="MIR2 repeat: matches 139..85 of consensus" ignored annotation: repeat_region 49611..49909 ignored annotation: /note="AluSx repeat: matches 2..302 of consensus" ignored annotation: repeat_region 50022..50650 ignored annotation: /note="MER42c repeat: matches 1409..774 of consensus" ignored annotation: repeat_region 50893..51101 ignored annotation: /note="MIR repeat: matches 12..225 of consensus" ignored annotation: repeat_region 51108..51321 ignored annotation: /note="MIR repeat: matches 236..21 of consensus" ignored annotation: repeat_region 52992..53261 ignored annotation: /note="AluJb repeat: matches 36..300 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 53518..53605 ignored annotation: /note="MIR repeat: matches 56..144 of consensus" ignored annotation: repeat_region 55909..56208 ignored annotation: /note="AluSg repeat: matches 300..1 of consensus" ignored annotation: repeat_region 57291..57440 ignored annotation: /note="MER5A repeat: matches 11..183 of consensus" ignored annotation: repeat_region 57641..57933 ignored annotation: /note="AluJo repeat: matches 1..292 of consensus" ignored annotation: repeat_region 57982..58157 ignored annotation: /note="MER20 repeat: matches 29..214 of consensus" ignored annotation: repeat_region 58413..58713 ignored annotation: /note="AluSx repeat: matches 1..301 of consensus" ignored annotation: repeat_region 60409..60710 ignored annotation: /note="AluSx repeat: matches 1..302 of consensus" ignored annotation: repeat_region 64499..64657 ignored annotation: /note="AluJo repeat: matches 137..302 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 65359..65466 ignored annotation: /note="MIR repeat: matches 220..105 of consensus" ignored annotation: misc_feature 66394..66519 ignored annotation: /note="match: Z16533 STS containing (CA) repeat" ignored annotation: repeat_region 66446..66491 ignored annotation: /note="26 copies of copies of AC 100% conserved; differs ignored annotation: from Z23853" ignored annotation: repeat_region 66706..66905 ignored annotation: /note="MIR repeat: matches 37..225 of consensus" ignored annotation: repeat_region 67304..67432 ignored annotation: /note="AluJo repeat: matches 302..176 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 68263..68558 ignored annotation: /note="AluSx repeat: matches 1..298 of consensus" ignored annotation: repeat_region 69006..69104 ignored annotation: /note="MIR2 repeat: matches 1..95 of consensus" ignored annotation: repeat_region 69921..70217 ignored annotation: /note="AluSx repeat: matches 1..296 of consensus" ignored annotation: repeat_region 71545..71681 ignored annotation: /note="MIR2 repeat: matches 2..144 of consensus" ignored annotation: repeat_region 74632..74758 ignored annotation: /note="MER42B repeat: matches 1143..1273 of consensus" ignored annotation: repeat_region 74763..74794 ignored annotation: /note="16 copies of 2 mer 88 % conserved" ignored annotation: repeat_region 75455..75724 ignored annotation: /note="MER33 repeat: matches 45..322 of consensus" ignored annotation: repeat_region 75823..75989 ignored annotation: /note="MIR repeat: matches 43..213 of consensus" ignored annotation: repeat_region 76591..76671 ignored annotation: /note="MIR2 repeat: matches 59..142 of consensus" ignored annotation: repeat_region 77931..78235 ignored annotation: /note="AluJb repeat: matches 1..299 of consensus" ignored annotation: repeat_region 78247..78492 ignored annotation: /note="MIR repeat: matches 260..14 of consensus" ignored annotation: repeat_region 79061..79361 ignored annotation: /note="AluSq repeat: matches 1..302 of consensus" ignored annotation: repeat_region 80218..80390 ignored annotation: /note="AluJb repeat: matches 128..300 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 80677..80720 ignored annotation: /note="11 copies of 4 mer 82 % conserved" ignored annotation: repeat_region 82166..82211 ignored annotation: /note="23 copies of 2 mer 83 % conserved" ignored annotation: misc_feature 82463..82669 ignored annotation: /note="match: STS G04359" ignored annotation: repeat_region 83187..83304 ignored annotation: /note="MIR repeat: matches 153..28 of consensus" ignored annotation: repeat_region 84783..85083 ignored annotation: /note="AluY repeat: matches 1..301 of consensus" ignored annotation: repeat_region 85166..85424 ignored annotation: /note="AluSx repeat: matches 37..298 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 85868..85901 ignored annotation: /note="17 copies of 2 mer 88 % conserved" ignored annotation: repeat_region 86665..86720 ignored annotation: /note="MIR2 repeat: matches 145..94 of consensus" ignored annotation: repeat_region 88004..88295 ignored annotation: /note="AluJo repeat: matches 1..286 of consensus" ignored annotation: repeat_region 89221..89506 ignored annotation: /note="AluSc repeat: matches 299..1 of consensus" ignored annotation: repeat_region 91361..91662 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 91663..91808 ignored annotation: /note="MIR repeat: matches 204..51 of consensus" CDS = 92609..92686,101321..101412,105557..105676,111492..111660,116407..116586 ignored annotation: /codon_start=1 ignored annotation: /product="GRB2L" ignored annotation: /db_xref="PID:e1216623" ignored annotation: /db_xref="PID:g2695869" translation = MEAVAKFDFTASGEDELSFHTGDVLKILSNQEEWFKAELGSQEGYVPKNFIDIQFPKWFHEGLSRHQAENLLMGKEVGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDNKGNYFLWTEKFPSLNKLVDYYRTNSISRQKQIFLRDRTREDQRVRWARALYDFEALEDDELGFHSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMTR ignored annotation: repeat_region 93459..93527 ignored annotation: /note="3 copies of 23 mer 100 % conserved" ignored annotation: repeat_region 94779..94999 ignored annotation: /note="MIR repeat: matches 259..30 of consensus" ignored annotation: repeat_region 97527..97828 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 98339..98435 ignored annotation: /note="MIR repeat: matches 221..130 of consensus" ignored annotation: repeat_region 99117..99414 ignored annotation: /note="AluJo repeat: matches 295..1 of consensus" ignored annotation: repeat_region 99908..100196 ignored annotation: /note="AluSx repeat: matches 292..1 of consensus" ignored annotation: repeat_region 100581..100878 ignored annotation: /note="AluSc repeat: matches 3..299 of consensus" ignored annotation: repeat_region 101659..101958 ignored annotation: /note="AluJb repeat: matches 301..1 of consensus" ignored annotation: repeat_region 102001..102270 ignored annotation: /note="AluSx repeat: matches 294..1 of consensus" ignored annotation: repeat_region 103166..103451 ignored annotation: /note="AluJo repeat: matches 12..296 of consensus" ignored annotation: repeat_region 103915..104060 ignored annotation: /note="MIR2 repeat: matches 1..146 of consensus" ignored annotation: repeat_region 106167..106445 ignored annotation: /note="MER39 repeat: matches 16..298 of consensus" ignored annotation: repeat_region 106456..106715 ignored annotation: /note="AluJo repeat: matches 301..41 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 106791..106861 ignored annotation: /note="MER39 repeat: matches 434..511 of consensus" ignored annotation: repeat_region 107643..107938 ignored annotation: /note="AluJo repeat: matches 1..294 of consensus" ignored annotation: repeat_region 108163..108468 ignored annotation: /note="AluSx repeat: matches 297..3 of consensus" ignored annotation: repeat_region 109238..109526 ignored annotation: /note="AluY repeat: matches 1..290 of consensus" ignored annotation: misc_feature 109482..109984 ignored annotation: /note="match: STS G33279" ignored annotation: repeat_region 110452..110563 ignored annotation: /note="MIR repeat: matches 33..152 of consensus" ignored annotation: repeat_region 110614..110894 ignored annotation: /note="AluSx repeat: matches 5..302 of consensus" ignored annotation: repeat_region 111789..111931 ignored annotation: /note="MIR repeat: matches 48..201 of consensus" ignored annotation: repeat_region 112249..112463 ignored annotation: /note="MIR repeat: matches 38..256 of consensus" ignored annotation: repeat_region 112483..112516 ignored annotation: /note="17 copies of 2 mer 91 % conserved" ignored annotation: repeat_region 112884..112934 ignored annotation: /note="MIR repeat: matches 181..231 of consensus" ignored annotation: repeat_region 112909..112973 ignored annotation: /note="MIR2 repeat: matches 84..141 of consensus" ignored annotation: repeat_region 113961..114026 ignored annotation: /note="33 copies of 2 mer 88 % conserved" ignored annotation: repeat_region 114588..114706 ignored annotation: /note="MIR2 repeat: matches 17..146 of consensus" ignored annotation: repeat_region 115134..115436 ignored annotation: /note="AluSq repeat: matches 1..303 of consensus" ignored annotation: repeat_region 115619..115882 ignored annotation: /note="AluJo repeat: matches 299..1 of consensus" ignored annotation: repeat_region 116142..116265 ignored annotation: /note="AluJo repeat: matches 2..125 of consensus; ignored annotation: incomplete repeat" ignored annotation: 3'UTR 116581..116730 ignored annotation: /note="GRB2L" ignored annotation: repeat_region 117479..117543 ignored annotation: /note="L1 repeat: matches 3836..3777 of consensus" ignored annotation: repeat_region 117873..118004 ignored annotation: /note="3 copies of 44 mer 80 % conserved" ignored annotation: prim_transcript <118442..>118798 ignored annotation: /note="match: EST F21127" ignored annotation: repeat_region 120615..120656 ignored annotation: /note="21 copies of 2 mer 83 % conserved" ignored annotation: repeat_region 120657..120958 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 121085..121146 ignored annotation: /note="AluSc repeat: matches 258..194 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 121156..121268 ignored annotation: /note="MIR2 repeat: matches 30..146 of consensus" ignored annotation: repeat_region 122626..122759 ignored annotation: /note="MER3 repeat: matches 2..132 of consensus" ignored annotation: repeat_region 123266..123564 ignored annotation: /note="AluSg repeat: matches 1..299 of consensus" ignored annotation: repeat_region 123607..124175 ignored annotation: /note="L1MC1 repeat: matches 30..621 of consensus" ignored annotation: repeat_region 124185..124490 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 124491..124962 ignored annotation: /note="L1MC1 repeat: matches 604..1079 of consensus" ignored annotation: misc_feature 124959..125267 ignored annotation: /note="match: STS L18079" ignored annotation: repeat_region 125089..125144 ignored annotation: /note="14 copies of 4 mer 91 % conserved" ignored annotation: repeat_region 126470..126596 ignored annotation: /note="MIR repeat: matches 9..142 of consensus" ignored annotation: repeat_region 126741..126779 ignored annotation: /note="FLAM repeat: matches 86..124 of consensus" ignored annotation: repeat_region 126782..127076 ignored annotation: /note="AluSx repeat: matches 296..1 of consensus" ignored annotation: repeat_region 127094..127271 ignored annotation: /note="AluJo repeat: matches 131..302 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 127284..127582 ignored annotation: /note="AluSg repeat: matches 1..299 of consensus" ignored annotation: repeat_region 127650..127784 ignored annotation: /note="AluSq repeat: matches 1..135 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 127785..128084 ignored annotation: /note="AluSq repeat: matches 1..301 of consensus" ignored annotation: repeat_region 128086..128260 ignored annotation: /note="AluSg repeat: matches 126..300 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 128261..128288 ignored annotation: /note="14 copies of 2 mer 100 % conserved" ignored annotation: repeat_region 128291..128587 ignored annotation: /note="AluSx repeat: matches 1..297 of consensus" ignored annotation: misc_feature 129677..129859 ignored annotation: /note="match: exon trap H55317 clone C22_318" ignored annotation: repeat_region 129700..129813 ignored annotation: /note="MIR repeat: matches 25..151 of consensus" ignored annotation: repeat_region 129961..130296 ignored annotation: /note="AluSc repeat: matches 2..299 of consensus" ignored annotation: misc_feature 131684..132022 ignored annotation: /note="match: Z23853 STS containing (CA) repeat" ignored annotation: repeat_region 131855..131904 ignored annotation: /note="25 copies of AC 100% conserved; differs from ignored annotation: Z23853" ignored annotation: repeat_region 132088..132357 ignored annotation: /note="AluSq repeat: matches 33..303 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 132662..132851 ignored annotation: /note="AluJo repeat: matches 111..296 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 132903..132948 ignored annotation: /note="23 copies of 2 mer 94 % conserved" ignored annotation: repeat_region 133113..133404 ignored annotation: /note="AluSc repeat: matches 1..289 of consensus" ignored annotation: repeat_region 133407..133704 ignored annotation: /note="AluSq repeat: matches 4..303 of consensus" ignored annotation: repeat_region 135744..136040 ignored annotation: /note="AluSq repeat: matches 1..298 of consensus" ignored annotation: repeat_region 136951..137099 ignored annotation: /note="MIR repeat: matches 2..151 of consensus" ignored annotation: repeat_region 137100..137262 ignored annotation: /note="AluJo repeat: matches 300..126 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 137557..137680 ignored annotation: /note="FLAM_A repeat: matches 126..1 of consensus" ignored annotation: repeat_region 137692..137832 ignored annotation: /note="MIR repeat: matches 152..11 of consensus" ignored annotation: repeat_region 137852..137950 ignored annotation: /note="MER5A repeat: matches 11..109 of consensus" ignored annotation: repeat_region 138055..138159 ignored annotation: /note="MIR repeat: matches 192..98 of consensus" ignored annotation: repeat_region 138428..138467 ignored annotation: /note="MIR2 repeat: matches 97..136 of consensus" ignored annotation: repeat_region 138516..138799 ignored annotation: /note="AluSg repeat: matches 13..298 of consensus" ignored annotation: repeat_region 139351..139430 ignored annotation: /note="MIR repeat: matches 60..145 of consensus" ignored annotation: misc_feature 139983..140988 ignored annotation: /note="Putative CpG island" ignored annotation: repeat_region 141614..141666 ignored annotation: /note="MIR2 repeat: matches 124..71 of consensus" ignored annotation: repeat_region 142475..142694 ignored annotation: /note="MIR repeat: matches 249..2 of consensus" ignored annotation: repeat_region 143445..143510 ignored annotation: /note="MIR repeat: matches 149..85 of consensus" ignored annotation: BASE COUNT 41994 a 31978 c 30808 g 38967 t // ** orig/raws/HS370M22:2876: missing "mRNA" entry === HSACKI10 === locus = HSACKI10 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="blood (peripheral)" ignored annotation: /clone_lib="EMBL3" ignored annotation: /clone="lambda KH10(5)" ignored annotation: /chromosome="17" ignored annotation: /map="proximal to 17q21" ignored annotation: repeat_region 89..420 ignored annotation: /note="truncated Alu" ignored annotation: -10_signal 1614..1621 ignored annotation: exon 1649..2300 ignored annotation: /number=1 mRNA = 1649..2300,3142..3224,3592..3748,3836..3997,4085..4210,4525..4742,5098..5499,5805..6170 ignored annotation: prim_transcript 1649..6170 CDS = 1674..2300,3142..3224,3592..3748,3836..3997,4085..4210,4525..4742,5098..5499,5805..5811 ignored annotation: /note="unnamed protein product" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g28317" ignored annotation: /db_xref="SWISS-PROT:P13645" translation = MSVRYSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFHGSYGSSSFGGSYGGSFGGGNFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGGLLSGNEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYSKYYKTIDDLKNQILNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTLTKADLEMQIESLTEELAYLKKNHEEEMKDLRNVSTGDVNVEMNAAPGVDLTQLLNNMRSQYEQLAEQNRKDAEAWFNEKSKELTTEIDNNIEQISSYKSEITELRRNVQALEIELQSQLALKQSLEASLAETEGRYCVQLSQIHAQISALEEQLQQIRAETECQNTEYQQLLDIKIRLENEIQTYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGYGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKGPRY ignored annotation: mat_peptide join(1674..2300,3142..3224,3592..3748,3836..3997, ignored annotation: 4085..4210,4525..4742,5098..5499,5805..5808) ignored annotation: intron 2301..3141 ignored annotation: /number=1 ignored annotation: exon 3142..3224 ignored annotation: /number=2 ignored annotation: intron 3225..3591 ignored annotation: /number=2 ignored annotation: exon 3592..3748 ignored annotation: /number=3 ignored annotation: intron 3749..3835 ignored annotation: /number=3 ignored annotation: exon 3836..3997 ignored annotation: /number=4 ignored annotation: intron 3998..4084 ignored annotation: /number=4 ignored annotation: exon 4085..4210 ignored annotation: /number=5 ignored annotation: intron 4211..4524 ignored annotation: /number=5 ignored annotation: exon 4525..4742 ignored annotation: /number=6 ignored annotation: intron 4743..5097 ignored annotation: /number=6 ignored annotation: exon 5098..5499 ignored annotation: /number=7 ignored annotation: intron 5500..5804 ignored annotation: /number=7 ignored annotation: exon 5805..6170 ignored annotation: /number=8 ignored annotation: polyA_signal 6144..6149 ignored annotation: polyA_site 6170 ignored annotation: BASE COUNT 2075 a 1267 c 1341 g 1800 t mRNA range 1649..2300 mRNA range 3142..3224 mRNA range 3592..3748 mRNA range 3836..3997 mRNA range 4085..4210 mRNA range 4525..4742 mRNA range 5098..5499 mRNA range 5805..6170 CDS range 1674..2300 CDS range 3142..3224 CDS range 3592..3748 CDS range 3836..3997 CDS range 4085..4210 CDS range 4525..4742 CDS range 5098..5499 CDS range 5805..5811 seq_ini = 1 seq_fin = 6483 i = 5811 last codon bas = ac[taa]caa last codon lab = EF[DEF]YYY === HSACTH === locus = HSACTH ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="2" ignored annotation: /map="p23" ignored annotation: CAAT_signal 616..624 ignored annotation: TATA_signal 653..659 mRNA = 681..766,4475..4626,7513..8345 ignored annotation: exon 681..766 ignored annotation: /number=1 ignored annotation: intron 767..4474 ignored annotation: repeat_region 1086..1405 ignored annotation: /rpt_family="Alu" ignored annotation: exon 4475..4626 ignored annotation: /number=2 ignored annotation: gene 4495..8184 ignored annotation: /gene="POMC" CDS = 4495..4626,7513..8184 ignored annotation: /gene="POMC" ignored annotation: /codon_start=1 ignored annotation: /product="proopiomelanocortin" ignored annotation: /db_xref="PID:g28342" ignored annotation: /db_xref="SWISS-PROT:P01189" translation = MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPMFPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGGPEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKRELTGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGFMTSEKSQTPLVTLFKNAIIKNAYKKGE ignored annotation: intron 4627..7512 ignored annotation: /gene="POMC" ignored annotation: repeat_region 5334..5657 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 6511..6658 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 6776..7112 ignored annotation: /rpt_family="Alu" ignored annotation: exon 7513..8345 ignored annotation: /number=3 ignored annotation: BASE COUNT 2105 a 2225 c 2229 g 2099 t mRNA range 681..766 mRNA range 4475..4626 mRNA range 7513..8345 CDS range 4495..4626 CDS range 7513..8184 seq_ini = 1 seq_fin = 8658 i = 8184 last codon bas = ag[tga]ggg last codon lab = EF[DEF]YYY === HSALADG === locus = HSALADG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /tissue_type="liver" ignored annotation: /chromosome="9" ignored annotation: /map="q34" ignored annotation: prim_transcript <1..>15913 ignored annotation: repeat_region 482..791 ignored annotation: /rpt_family="Alu repetitive sequence" ignored annotation: repeat_region 1588..1881 ignored annotation: /rpt_family="Alu repetitive sequence" ignored annotation: protein_bind 2111..2116 ignored annotation: /note="consensus (A/T)GATA(A/G). GATA-1 is also known as ignored annotation: Eryf1, NF-E1, EF-1, EF-gamma-a and GF-1" ignored annotation: /bound_moiety="GATA-1" ignored annotation: /function="Erythroid transcription factor" ignored annotation: protein_bind 2123..2128 ignored annotation: /note="consensus (A/T)GATA(A/G). GATA-1 is also known as ignored annotation: Eryf1, NF-E1, EF-1, EF-gamma-a and GF-1" ignored annotation: /bound_moiety="GATA-1" ignored annotation: /function="Erythroid transcription factor" ignored annotation: protein_bind 2143..2148 ignored annotation: /note="consensus (A/T)GATA(A/G). GATA-1 is also known as ignored annotation: Eryf1, NF-E1, EF-1, EF-gamma-a and GF-1" ignored annotation: /bound_moiety="GATA-1" ignored annotation: /function="Erythroid transcription factor" ignored annotation: GC_signal 2556..2561 ignored annotation: GC_signal 2610..2615 ignored annotation: GC_signal 2684..2689 mRNA = 2742..2803,10451..10563,11841..11891,12387..12483,13076..13211,13332..13415,13515..13603,14180..14235,14321..14408,14483..14569,14901..15030,15643..15798 ignored annotation: /gene="ALAD" ignored annotation: /note="houskeeping promoter transcript" ignored annotation: gene 2742..15798 ignored annotation: /gene="ALAD" ignored annotation: exon 2742..2803 ignored annotation: /gene="ALAD" ignored annotation: /note="untranslated, for houskeeping promoter transcripts ignored annotation: only" ignored annotation: /number=1 ignored annotation: intron 2804..10375 ignored annotation: /gene="ALAD" ignored annotation: /note="for houskeeping promoter transcripts only" ignored annotation: /number=1 ignored annotation: repeat_region 3167..3474 ignored annotation: /rpt_family="Alu repetitive sequence" ignored annotation: repeat_region 6093..6409 ignored annotation: /rpt_family="Alu repetitive sequence" ignored annotation: misc_signal 6551..6555 ignored annotation: /gene="ALAD" ignored annotation: /function="CACCC Box" ignored annotation: /phenotype="Erythroid regulatory sequence" ignored annotation: misc_signal 6558..6562 ignored annotation: /gene="ALAD" ignored annotation: /function="CACCC Box" ignored annotation: /phenotype="Erythroid regulatory sequence" ignored annotation: protein_bind 6593..6598 ignored annotation: /gene="ALAD" ignored annotation: /note="consensus (A/T)GATA(A/G). GATA-1 is also known as ignored annotation: Eryf1, NF-E1, EF-1, EF-gamma-a and GF-1" ignored annotation: /bound_moiety="GATA-1" ignored annotation: /function="Erythroid transcription factor" ignored annotation: protein_bind 6624..6629 ignored annotation: /gene="ALAD" ignored annotation: /note="consensus (A/T)GATA(A/G). GATA-1 is also known as ignored annotation: Eryf1, NF-E1, EF-1, EF-gamma-a and GF-1" ignored annotation: /bound_moiety="GATA-1" ignored annotation: /function="Erythroid transcription factor" ignored annotation: protein_bind 6723..6728 ignored annotation: /gene="ALAD" ignored annotation: /note="consensus (A/T)GATA(A/G). GATA-1 is also known as ignored annotation: Eryf1, NF-E1, EF-1, EF-gamma-a and GF-1" ignored annotation: /bound_moiety="GATA-1" ignored annotation: /function="Erythroid transcription factor" mRNA join(6902..6968,10451..10563,11841..11891,12387..12483, ** orig/raws/HSALADG:106: more than one "mRNA" entry === HSALDCG === locus = HSALDCG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="lambda EMBL3" ignored annotation: /clone="lambda C1" ignored annotation: /chromosome="17" ignored annotation: misc_feature 1..1243 ignored annotation: /note="5'-flanking region" ignored annotation: old_sequence 25..27 ignored annotation: /citation=[1] ignored annotation: /replace="ac" ignored annotation: old_sequence 34..36 ignored annotation: /citation=[1] ignored annotation: /replace="gc" ignored annotation: old_sequence 48..49 ignored annotation: /citation=[1] ignored annotation: /replace="gct" ignored annotation: old_sequence 63..64 ignored annotation: /citation=[1] ignored annotation: /replace="tcg" ignored annotation: old_sequence 68..69 ignored annotation: /citation=[1] ignored annotation: /replace="tct" ignored annotation: old_sequence 75..76 ignored annotation: /citation=[1] ignored annotation: /replace="gcc" ignored annotation: old_sequence 84..88 ignored annotation: /citation=[1] ignored annotation: /replace="tcaagcg" ignored annotation: old_sequence 92..94 ignored annotation: /citation=[1] ignored annotation: /replace="acg" ignored annotation: old_sequence 97..107 ignored annotation: /citation=[1] ignored annotation: /replace="gacggacg" ignored annotation: old_sequence 263..264 ignored annotation: /citation=[1] ignored annotation: /replace="tgg" ignored annotation: old_sequence 357..359 ignored annotation: /citation=[1] ignored annotation: /replace="at" ignored annotation: promoter 453..457 ignored annotation: /note="CCAAT box [4]" ignored annotation: promoter 491..520 ignored annotation: /note="TATA-like sequence [4]" ignored annotation: old_sequence 657..660 ignored annotation: /citation=[1] ignored annotation: /replace="gacgt" ignored annotation: old_sequence 1047..1049 ignored annotation: /citation=[1] ignored annotation: /replace="tg" ignored annotation: old_sequence 1096..1098 ignored annotation: /citation=[1] ignored annotation: /replace="cg" ignored annotation: misc_feature 1130..1135 ignored annotation: /note="Sp1 binding site [4]" ignored annotation: exon 1189..1282 ignored annotation: /note="exon 1 [4] (start was 1244 in [1])" ignored annotation: /number=1 ignored annotation: old_sequence 1205..1207 ignored annotation: /citation=[1] ignored annotation: /replace="ag" ignored annotation: intron 1283..2516 ignored annotation: /number=1 ignored annotation: exon 2517..2640 ignored annotation: /number=2 CDS = 2529..2640,2727..2938,3055..3109,3205..3365,3483..3566,3819..3993,4126..4325,4434..4529 ignored annotation: /codon_start=1 ignored annotation: /product="aldolase C" ignored annotation: /db_xref="PID:g312137" ignored annotation: /db_xref="SWISS-PROT:P09972" translation = MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYRQVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQDKGIVVGIKVDKGVVPLAGTDGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHACPIKYTPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLNAINRCPLPRPWALTFSYGRALQASAVNAWRGQRDNAGAATEEFIKRAEVNGLAAQGKYEGSGEDGGAAAQSLYIANHAY ignored annotation: intron 2641..2726 ignored annotation: /number=2 ignored annotation: exon 2727..2938 ignored annotation: /number=3 ignored annotation: intron 2939..3054 ignored annotation: /number=3 ignored annotation: old_sequence 3017..3019 ignored annotation: /citation=[1] ignored annotation: /replace="tc" ignored annotation: old_sequence 3035..3037 ignored annotation: /citation=[1] ignored annotation: /replace="tc" ignored annotation: exon 3055..3109 ignored annotation: /number=4 ignored annotation: intron 3110..3204 ignored annotation: /number=4 ignored annotation: exon 3205..3365 ignored annotation: /number=5 ignored annotation: intron 3366..3482 ignored annotation: /number=5 ignored annotation: exon 3483..3566 ignored annotation: /number=6 ignored annotation: intron 3567..3818 ignored annotation: /number=6 ignored annotation: old_sequence 3653..3659 ignored annotation: /citation=[1] ignored annotation: /replace="gcaat" ignored annotation: old_sequence 3698..3700 ignored annotation: /citation=[1] ignored annotation: /replace="tg" ignored annotation: old_sequence 3786..3788 ignored annotation: /citation=[1] ignored annotation: /replace="ac" ignored annotation: old_sequence 3808..3810 ignored annotation: /citation=[1] ignored annotation: /replace="tc" ignored annotation: exon 3819..3993 ignored annotation: /number=7 ignored annotation: intron 3994..4125 ignored annotation: /number=7 ignored annotation: exon 4126..4325 ignored annotation: /number=8 ignored annotation: intron 4326..4433 ignored annotation: /number=8 ignored annotation: exon 4434..>4529 ignored annotation: /number=9 ignored annotation: old_sequence 4638..4640 ignored annotation: /citation=[1] ignored annotation: /replace="ac" ignored annotation: old_sequence 4687..4689 ignored annotation: /citation=[1] ignored annotation: /replace="ac" ignored annotation: misc_feature 4916..4921 ignored annotation: /note="pot. polyA signal" ignored annotation: old_sequence 5055..5056 ignored annotation: /citation=[1] ignored annotation: /replace="cgt" ignored annotation: old_sequence 5122..5123 ignored annotation: /citation=[1] ignored annotation: /replace="act" ignored annotation: BASE COUNT 1093 a 1480 c 1358 g 1267 t // ** orig/raws/HSALDCG:269: missing "mRNA" entry === HSAPOA2 === locus = HSAPOA2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature complement(59..64) ignored annotation: /note="seq. pot. involved in steroid hormone/receptor ignored annotation: binding" ignored annotation: misc_feature complement(632..637) ignored annotation: /note="seq. pot. involved in steroid hormone/receptor ignored annotation: binding" ignored annotation: CAAT_signal 1100..1108 ignored annotation: TATA_signal 1148..1153 ignored annotation: prim_transcript 1174..2507 ignored annotation: /gene="apo AII" mRNA = 1174..1210,1380..1455,1749..1881,2277..2507 ignored annotation: /gene="apo AII" ignored annotation: exon 1174..1210 ignored annotation: /gene="apo AII" ignored annotation: /number=1 ignored annotation: gene 1174..2507 ignored annotation: /gene="apo AII" ignored annotation: misc_feature 1182 ignored annotation: /gene="apo AII" ignored annotation: /note="5' end of cDNA" ignored annotation: intron 1211..1379 ignored annotation: /gene="apo AII" ignored annotation: /number=1 ignored annotation: exon 1380..1455 ignored annotation: /gene="apo AII" ignored annotation: /number=2 CDS = 1404..1455,1749..1881,2277..2394 ignored annotation: /gene="apo AII" ignored annotation: /codon_start=1 ignored annotation: /product="apolipoprotein" ignored annotation: /db_xref="PID:g671882" ignored annotation: /db_xref="SWISS-PROT:P02652" translation = MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTHPATQ ignored annotation: sig_peptide 1404..1455 ignored annotation: /gene="apo AII" ignored annotation: intron 1456..1748 ignored annotation: /gene="apo AII" ignored annotation: /number=2 ignored annotation: repeat_region 1711..1742 ignored annotation: /note="(GT) 16, pot. z-DNA sequence" ignored annotation: misc_feature 1711..1748 ignored annotation: /gene="apo AII" ignored annotation: /note="functional acceptor site variant sequence" ignored annotation: exon 1749..1881 ignored annotation: /gene="apo AII" ignored annotation: /number=3 ignored annotation: misc_feature 1749..1765 ignored annotation: /gene="apo AII" ignored annotation: /note="pro-peptide" ignored annotation: intron 1882..2276 ignored annotation: /gene="apo AII" ignored annotation: /number=3 ignored annotation: exon 2277..2507 ignored annotation: /gene="apo AII" ignored annotation: /number=4 ignored annotation: polyA_signal 2487..2492 ignored annotation: /gene="apo AII" ignored annotation: polyA_site 2507 ignored annotation: /gene="apo AII" ignored annotation: BASE COUNT 904 a 849 c 832 g 775 t mRNA range 1174..1210 mRNA range 1380..1455 mRNA range 1749..1881 mRNA range 2277..2507 CDS range 1404..1455 CDS range 1749..1881 CDS range 2277..2394 seq_ini = 1 seq_fin = 3360 i = 2394 last codon bas = ag[tga]agt last codon lab = EF[DEF]YYY === HSAPOAIA === locus = HSAPOAIA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 8..13 mRNA = 39..56,254..316,504..660,1249..1907 ignored annotation: exon 39..56 ignored annotation: /number=1 ignored annotation: intron 57..253 ignored annotation: /number=1 ignored annotation: exon 254..316 ignored annotation: /number=2 ignored annotation: sig_peptide join(274..316,504..514) CDS = 274..316,504..660,1249..1852 ignored annotation: /codon_start=1 ignored annotation: /product="apolipoprotein AI precursor" ignored annotation: /db_xref="PID:g296635" ignored annotation: /db_xref="SWISS-PROT:P02647" translation = MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ ignored annotation: intron 317..503 ignored annotation: /number=2 ignored annotation: exon 504..660 ignored annotation: /number=3 ignored annotation: mat_peptide join(515..660,1249..1849) ignored annotation: /product="apolipoprotein AI" ignored annotation: intron 661..1248 ignored annotation: /number=3 ignored annotation: exon 1249..1907 ignored annotation: /number=4 ignored annotation: BASE COUNT 450 a 688 c 685 g 384 t 2 others 2041 gggccaagat cgacgttgga ggacctgctg gacgcntggc tgcttacgag tgagggagta ** orig/raws/HSAPOAIA:86: invalid base letter "n" === HSARS81S === locus = HSARS81S ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: TATA_signal 524..529 ignored annotation: exon 552..635 ignored annotation: /number=1 ignored annotation: sig_peptide join(578..635,1041..1048) ignored annotation: /gene="ARS" ignored annotation: gene 578..1820 ignored annotation: /gene="ARS" CDS = 578..635,1041..1160,1687..1820 ignored annotation: /gene="ARS" ignored annotation: /standard_name="ARS(Component B)-81/s" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e265523" ignored annotation: /db_xref="PID:g1536902" translation = MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL ignored annotation: intron 636..1040 ignored annotation: /gene="ARS" ignored annotation: /number=1 ignored annotation: exon 1041..1160 ignored annotation: /gene="ARS" ignored annotation: /number=2 ignored annotation: mat_peptide join(1049..1160,1687..1817) ignored annotation: /gene="ARS" ignored annotation: intron 1161..1686 ignored annotation: /gene="ARS" ignored annotation: /number=2 ignored annotation: exon 1687..2010 ignored annotation: /number=3 ignored annotation: polyA_signal 1992..1997 ignored annotation: BASE COUNT 384 a 642 c 651 g 386 t // ** orig/raws/HSARS81S:91: missing "mRNA" entry === HSARYLA === locus = HSARYLA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="G1/1" ignored annotation: /cell_type="leukocytes" ignored annotation: /clone_lib="EMBL-3" ignored annotation: /chromosome="22" ignored annotation: misc_feature 191..200 ignored annotation: /note="GC-box 1" ignored annotation: misc_feature 201..210 ignored annotation: /note="GC-box 2" ignored annotation: misc_feature 213..222 ignored annotation: /note="GC-box 3" ignored annotation: misc_feature 240..249 ignored annotation: /note="GC-box 4" ignored annotation: prim_transcript 256..3356 mRNA = 256..847,997..1237,1352..1570,1645..1814,2127..2251,2342..2469,2720..2822,2938..3356 ignored annotation: exon 256..847 ignored annotation: /number=1 CDS = 630..847,997..1237,1352..1570,1645..1814,2127..2251,2342..2469,2720..2822,2938..3257 ignored annotation: /EC_number="3.1.6.1" ignored annotation: /codon_start=1 ignored annotation: /product="arylsulphatase a" ignored annotation: /db_xref="PID:g28860" ignored annotation: /db_xref="SWISS-PROT:P15289" translation = MGAPRSLLLALAAGLAVARPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLCTPSRAALLTGRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEARYMAFAHDLMADAQRQDRPFFLYYASHHTHYPQFSGQSFAERSGRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRTGKYKAHFFTQGSAHSDTTADPACHASSSLTAHEPPLLYDLSKDPGENYNLLGGVAGATPEVLQALKQLQLLKAQLDAAVTFGPSQVARGEDPALQICCHPGCTPRPACCHCPDPHA ignored annotation: intron 848..996 ignored annotation: /number=1 ignored annotation: exon 997..1237 ignored annotation: /number=2 ignored annotation: intron 1238..1351 ignored annotation: /number=2 ignored annotation: exon 1352..1570 ignored annotation: /number=3 ignored annotation: intron 1571..1644 ignored annotation: /number=3 ignored annotation: exon 1645..1814 ignored annotation: /number=4 ignored annotation: intron 1815..2126 ignored annotation: /number=4 ignored annotation: exon 2127..2251 ignored annotation: /number=5 ignored annotation: intron 2252..2341 ignored annotation: /number=5 ignored annotation: exon 2342..2469 ignored annotation: /number=6 ignored annotation: intron 2470..2719 ignored annotation: /number=6 ignored annotation: exon 2720..2822 ignored annotation: /number=7 ignored annotation: intron 2823..2937 ignored annotation: /number=7 ignored annotation: exon 2938..3356 ignored annotation: /number=8 ignored annotation: polyA_signal 3351..3356 ignored annotation: BASE COUNT 566 a 1290 c 1107 g 674 t mRNA range 256..847 mRNA range 997..1237 mRNA range 1352..1570 mRNA range 1645..1814 mRNA range 2127..2251 mRNA range 2342..2469 mRNA range 2720..2822 mRNA range 2938..3356 CDS range 630..847 CDS range 997..1237 CDS range 1352..1570 CDS range 1645..1814 CDS range 2127..2251 CDS range 2342..2469 CDS range 2720..2822 CDS range 2938..3257 seq_ini = 1 seq_fin = 3637 i = 3257 last codon bas = cc[tga]ggg last codon lab = EF[DEF]YYY === HSASML === locus = HSASML ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="genomic" ignored annotation: /clone="CTG3" ignored annotation: protein_bind 70..79 ignored annotation: /note="putative" ignored annotation: /bound_moiety="Sp1" mRNA = <230..541,1008..1780,2833..3004,3234..3310,3513..3658,3815..>4224 ignored annotation: /gene="ASM" ignored annotation: gene 230..4224 ignored annotation: /gene="ASM" ignored annotation: exon <230..541 ignored annotation: /gene="ASM" ignored annotation: /number=1 CDS = 230..541,1008..1780,2833..3004,3234..3310,3513..3658,3815..4224 ignored annotation: /gene="ASM" ignored annotation: /EC_number="3.1.4.12" ignored annotation: /codon_start=1 ignored annotation: /product="acid sphingomyelinase" ignored annotation: /db_xref="PID:g556809" ignored annotation: /db_xref="SWISS-PROT:P17405" translation = MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALSDSRVLWAPAEAHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQIDGNYSRSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSARADSPALCRHLMPDGSLPEAQSLWPRPLFC ignored annotation: intron 542..1007 ignored annotation: /gene="ASM" ignored annotation: /number=1 ignored annotation: exon 1008..1780 ignored annotation: /gene="ASM" ignored annotation: /number=2 ignored annotation: intron 1781..2832 ignored annotation: /gene="ASM" ignored annotation: /number=2 ignored annotation: repeat_region 1970..2104 ignored annotation: /note="first half" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 2133..2407 ignored annotation: /rpt_family="Alu" ignored annotation: exon 2833..3004 ignored annotation: /gene="ASM" ignored annotation: /number=3 ignored annotation: intron 3005..3233 ignored annotation: /gene="ASM" ignored annotation: /number=3 ignored annotation: exon 3234..3310 ignored annotation: /gene="ASM" ignored annotation: /number=4 ignored annotation: intron 3311..3512 ignored annotation: /gene="ASM" ignored annotation: /number=4 ignored annotation: exon 3513..3658 ignored annotation: /gene="ASM" ignored annotation: /number=5 ignored annotation: intron 3659..3814 ignored annotation: /gene="ASM" ignored annotation: /number=5 ignored annotation: exon 3815..>4224 ignored annotation: /gene="ASM" ignored annotation: /number=6 ignored annotation: BASE COUNT 844 a 1291 c 1159 g 1017 t mRNA range 230..541 mRNA range 1008..1780 mRNA range 2833..3004 mRNA range 3234..3310 mRNA range 3513..3658 mRNA range 3815..4224 CDS range 230..541 CDS range 1008..1780 CDS range 2833..3004 CDS range 3234..3310 CDS range 3513..3658 CDS range 3815..4224 seq_ini = 1 seq_fin = 4311 i = 4224 last codon bas = gc[tag]ggc last codon lab = EF[DEF]NNN === HSAT3 === locus = HSAT3 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /map="q23-25" ignored annotation: allele 152..259 ignored annotation: /note="polymorphism" ignored annotation: /citation=[3] ignored annotation: exon <605..645 ignored annotation: /gene="AT3" ignored annotation: /number=1 mRNA = <605..645,2944..3310,5843..6058,6964..7101,7912..8302,10336..10400,13775..>13951 ignored annotation: /gene="AT3" ignored annotation: gene 605..13951 ignored annotation: /gene="AT3" CDS = 605..645,2944..3310,5843..6058,6964..7101,7912..8302,10336..10400,13775..13951 ignored annotation: /gene="AT3" ignored annotation: /codon_start=1 ignored annotation: /product="antithrombin" ignored annotation: /db_xref="PID:g28907" ignored annotation: /db_xref="SWISS-PROT:P01008" translation = MYSNVIGTVTSGKRKVYLLSLLLIGFWDCVTCHGSPVDICTAKPRDIPMNPMCIYRSPEKKATEDEGSEQKIPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANPCVK ignored annotation: intron 646..2943 ignored annotation: /gene="AT3" ignored annotation: /number=1 ignored annotation: repeat_region complement(2193..2469) ignored annotation: /note="Alu repeat element" ignored annotation: exon 2944..3310 ignored annotation: /gene="AT3" ignored annotation: /number=2 ignored annotation: intron 3311..5842 ignored annotation: /gene="AT3" ignored annotation: /number=2 ignored annotation: repeat_region complement(3784..3965) ignored annotation: /partial ignored annotation: /note="Alu repeat element" ignored annotation: repeat_region complement(4007..4284) ignored annotation: /note="Alu repeat element" ignored annotation: exon 5843..6058 ignored annotation: /gene="AT3" ignored annotation: /note="A" ignored annotation: /number=3 ignored annotation: intron 6059..6963 ignored annotation: /gene="AT3" ignored annotation: /note="A" ignored annotation: /number=3 ignored annotation: exon 6964..7101 ignored annotation: /gene="AT3" ignored annotation: /note="B" ignored annotation: /number=3 ignored annotation: intron 7102..7911 ignored annotation: /gene="AT3" ignored annotation: /note="B" ignored annotation: /number=3 ignored annotation: repeat_region complement(7277..7558) ignored annotation: /note="Alu repeat element" ignored annotation: exon 7912..8302 ignored annotation: /gene="AT3" ignored annotation: /note="4" ignored annotation: variation 8131 ignored annotation: /gene="AT3" ignored annotation: /note="polymorphism" ignored annotation: /replace="a" ignored annotation: variation 8160 ignored annotation: /gene="AT3" ignored annotation: /note="polymorphism; Pst1 site" ignored annotation: /replace="a" ignored annotation: intron 8303..10335 ignored annotation: /gene="AT3" ignored annotation: /number=4 ignored annotation: variation 8521 ignored annotation: /gene="AT3" ignored annotation: /note="Nhe1 site; polymorphism" ignored annotation: /replace="t" ignored annotation: repeat_region 8670..8687 ignored annotation: /rpt_family="att" ignored annotation: repeat_region complement(8692..8951) ignored annotation: /note="Alu repeat element" ignored annotation: repeat_region complement(8994..9264) ignored annotation: /note="Alu repeat element" ignored annotation: repeat_region 8994..9264 ignored annotation: /note="Alu repeat element" ignored annotation: repeat_region complement(9362..9633) ignored annotation: /note="Alu repeat element" ignored annotation: repeat_region 9823..9867 ignored annotation: /rpt_family="att" ignored annotation: repeat_region complement(9871..10152) ignored annotation: /note="Alu repeat element" ignored annotation: exon 10336..10400 ignored annotation: /gene="AT3" ignored annotation: /number=5 ignored annotation: intron 10401..13774 ignored annotation: /gene="AT3" ignored annotation: /number=5 ignored annotation: variation 10427 ignored annotation: /gene="AT3" ignored annotation: /note="Dde1 site; polymorphism" ignored annotation: /replace="c" ignored annotation: repeat_region complement(10732..11011) ignored annotation: /note="Alu repeat element" ignored annotation: repeat_region complement(12124..12405) ignored annotation: /note="Alu repeat element" ignored annotation: exon 13775..13951 ignored annotation: /gene="AT3" ignored annotation: /number=6 ignored annotation: BASE COUNT 3715 a 3338 c 3217 g 3936 t mRNA range 605..645 mRNA range 2944..3310 mRNA range 5843..6058 mRNA range 6964..7101 mRNA range 7912..8302 mRNA range 10336..10400 mRNA range 13775..13951 CDS range 605..645 CDS range 2944..3310 CDS range 5843..6058 CDS range 6964..7101 CDS range 7912..8302 CDS range 10336..10400 CDS range 13775..13951 seq_ini = 1 seq_fin = 14206 i = 13951 last codon bas = ag[taa]aat last codon lab = EF[DEF]NNN === HSATPCP1 === locus = HSATPCP1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="T-cell" ignored annotation: /cell_line="AT5B1" ignored annotation: /clone_lib="lambda 2001" ignored annotation: repeat_unit 1..224 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 273..442 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 606..904 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 1449..1768 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 1769..2111 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 2627..2945 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 2646..3233 ignored annotation: /rpt_family="Alu" ignored annotation: GC_signal 4041..4046 ignored annotation: repeat_unit 4100..4792 ignored annotation: /rpt_family="Alu" ignored annotation: CAAT_signal 4538..4542 ignored annotation: CAAT_signal 4641..4645 ignored annotation: CAAT_signal 4671..4675 ignored annotation: CAAT_signal 4697..4701 ignored annotation: TATA_signal 4708..4713 mRNA = 4733..4842,5341..5388,6304..6381,7088..7266,7587..7802 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: prim_transcript 4733..7802 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: gene 4733..7802 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: exon 4733..4842 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=1 ignored annotation: intron 4843..5340 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=1 ignored annotation: GC_signal 5002..5007 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: TATA_signal 5279..5280 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: exon 5341..5388 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=2 CDS = 5350..5388,6304..6381,7088..7266,7587..7701 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g38430" ignored annotation: /db_xref="SWISS-PROT:P05496" translation = MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM ignored annotation: intron 5389..6303 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=2 ignored annotation: exon 6304..6381 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=3 ignored annotation: intron 6382..7087 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=3 ignored annotation: repeat_unit 6418..6699 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /rpt_family="Alu" ignored annotation: exon 7088..7266 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=4 ignored annotation: mat_peptide join(7154..7266,7587..7698) ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: intron 7267..7586 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=4 ignored annotation: exon 7587..7802 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: /number=5 ignored annotation: polyA_signal 7780..7785 ignored annotation: /gene="P1 gene for c subunit of human mitochondrial ATP ignored annotation: synthase" ignored annotation: repeat_unit 8879..9176 ignored annotation: /rpt_family="Alu" ignored annotation: BASE COUNT 2505 a 2208 c 2318 g 2426 t mRNA range 4733..4842 mRNA range 5341..5388 mRNA range 6304..6381 mRNA range 7088..7266 mRNA range 7587..7802 CDS range 5350..5388 CDS range 6304..6381 CDS range 7088..7266 CDS range 7587..7701 seq_ini = 1 seq_fin = 9457 i = 7701 last codon bas = tg[tga]ggc last codon lab = EF[DEF]YYY === HSB3A === locus = HSB3A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="8p11.1-8p12" ignored annotation: /chromosome="8" ignored annotation: protein_bind 15..22 ignored annotation: /note="CRE element" ignored annotation: /bound_moiety="receptor" ignored annotation: protein_bind 119..126 ignored annotation: /note="CRE element" ignored annotation: /bound_moiety="receptor" ignored annotation: protein_bind 254..259 ignored annotation: /note="GRE element" ignored annotation: /bound_moiety="glucocorticoid receptor" ignored annotation: protein_bind 264..270 ignored annotation: /note="AP-1 site" ignored annotation: /bound_moiety="AP-1" ignored annotation: CAAT_signal complement(365..369) ignored annotation: CAAT_signal 386..390 mRNA = 441..1842,2868..>3525 ignored annotation: exon 441..1842 ignored annotation: /number=1 ignored annotation: misc_feature 441..492 ignored annotation: /note="CAP site" CDS = 638..1842,2868..2889 ignored annotation: /codon_start=1 ignored annotation: /product="beta-3-adrenergic receptor" ignored annotation: /db_xref="PID:g298095" ignored annotation: /db_xref="SWISS-PROT:P13945" translation = MAPWPHENSSLAPWPDLPTLAPNTANTSGLPGVPWEAALAGALLALAVLATVGGNLLVIVAIAWTPRLQTMTNVFVTSLAAADLVMGLLVVPPAATLALTGHWPLGATGCELWTSVDVLCVTASIETLCALAVDRYLAVTNPLRYGALVTKRCARTAVVLVWVVSAAVSFAPIMSQWWRVGADAEAQRCHSNPRCCAFASNMPYVLLSSSVSFYLPLLVMLFVYARVFVVATRQLRLLRGELGRFPPEESPPAPSRSLAPAPVGTCAPPEGVPACGRRPARLLPLREHRALCTLGLIMGTFTLCWLPFFLANVLRALGGPSLVPGPAFLALNWLGYANSAFNPLIYCRSPDFRSAFRRLLCRCGRRLPPEPCAAARPALFPSGVPAARSSPAQPRLCQRLDGASWGVS ignored annotation: intron 1843..2867 ignored annotation: /number=1 ignored annotation: exon 2868..>3525 ignored annotation: /number=2 ignored annotation: polyA_signal 3520..3525 ignored annotation: terminator 3567..3576 ignored annotation: BASE COUNT 604 a 1147 c 1060 g 872 t mRNA range 441..1842 mRNA range 2868..3525 CDS range 638..1842 CDS range 2868..2889 seq_ini = 1 seq_fin = 3683 i = 2889 last codon bas = ct[tag]gcc last codon lab = EF[DEF]YYY === HSBGPG === locus = HSBGPG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 420..425 ignored annotation: exon <496..559 ignored annotation: /number=1 CDS = 496..559,817..849,1026..1095,1297..1426 ignored annotation: /codon_start=1 ignored annotation: /product="BGP" ignored annotation: /db_xref="PID:g29450" ignored annotation: /db_xref="SWISS-PROT:P02818" translation = MRALTLLALLALAALCIAGQAGAKPSGAESSKAFVSKQEGSEVVKRPRRYLYQWLGAPVPYPDPLEPRREVCELNPDCDELADHIGFQEAYRRFYGPV ignored annotation: intron 560..816 ignored annotation: /number=1 ignored annotation: exon 817..849 ignored annotation: /number=2 ignored annotation: intron 850..1025 ignored annotation: /number=2 ignored annotation: exon 1026..1095 ignored annotation: /number=3 ignored annotation: intron 1096..1296 ignored annotation: /number=3 ignored annotation: exon 1297..>1426 ignored annotation: /number=4 ignored annotation: polyA_signal 1562..1567 ignored annotation: BASE COUNT 302 a 524 c 519 g 330 t // ** orig/raws/HSBGPG:74: missing "mRNA" entry === HSBSF2 === locus = HSBSF2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="tonsillar mononuclear cells" ignored annotation: misc_feature 879..909 ignored annotation: /note="sequence homologous to 5'flanking region of IL2" ignored annotation: misc_feature 993..998 ignored annotation: /note="enhancer-like element" ignored annotation: promoter 1016..1022 ignored annotation: /note="TATA box like sequence" ignored annotation: misc_feature 1027..1032 ignored annotation: /note="enhancer-like element" ignored annotation: misc_feature 1073..1078 ignored annotation: /note="enhancer-like element" ignored annotation: misc_feature 1082..1087 ignored annotation: /note="enhancer-like element" ignored annotation: misc_feature 1084..1089 ignored annotation: /note="enhancer-like element" ignored annotation: promoter 1108..1114 ignored annotation: /note="TATA box like sequence" ignored annotation: promoter 1131..1138 ignored annotation: /note="TATA box like sequence" ignored annotation: exon <1223..1241 ignored annotation: /number=1 CDS = 1223..1241,1396..1586,2634..2747,3454..3600,5342..5509 ignored annotation: /codon_start=1 ignored annotation: /product="B cell stimulatory factor-2 (BSF-2)" ignored annotation: /db_xref="PID:g29495" ignored annotation: /db_xref="SWISS-PROT:P05231" translation = MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM ignored annotation: intron 1242..1395 ignored annotation: /number=1 ignored annotation: exon 1396..1586 ignored annotation: /number=2 ignored annotation: intron 1587..2633 ignored annotation: /number=2 ignored annotation: exon 2634..2747 ignored annotation: /number=3 ignored annotation: intron 2748..3453 ignored annotation: /number=3 ignored annotation: exon 3454..3600 ignored annotation: /number=4 ignored annotation: intron 3601..5341 ignored annotation: /number=4 ignored annotation: exon 5342..>5509 ignored annotation: /number=5 ignored annotation: polyA_signal 5831..5836 ignored annotation: polyA_signal 5909..5914 ignored annotation: BASE COUNT 1682 a 1324 c 1373 g 1582 t // ** orig/raws/HSBSF2:180: missing "mRNA" entry === HSC1INHIB === locus = HSC1INHIB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /clone_lib="cosmid genomic" ignored annotation: /clone="6d" ignored annotation: repeat_region 266..542 ignored annotation: /rpt_family="Alu" ignored annotation: CAAT_signal 1080..1083 ignored annotation: misc_feature 1100..1105 ignored annotation: /note="IL-6 element" ignored annotation: CAAT_signal 1122..1125 ignored annotation: misc_feature 1152..1166 ignored annotation: /note="c-myc element (H-DNA)" ignored annotation: exon 1183..1220 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=1 ignored annotation: /evidence=experimental mRNA = 1183..1220,1747..1819,3378..3876,5533..5667,9507..9710,9905..10044,15213..15432,17824..>18341 ignored annotation: /note="C1 inhibitor" ignored annotation: intron 1221..1746 ignored annotation: /number=1 ignored annotation: exon 1747..1819 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=2 ignored annotation: /evidence=experimental CDS = 1769..1819,3378..3876,5533..5667,9507..9710,9905..10044,15213..15432,17824..18077 ignored annotation: /codon_start=1 ignored annotation: /product="C1 inhibitor" ignored annotation: /db_xref="PID:g29535" ignored annotation: /db_xref="SWISS-PROT:P05155" translation = MASRLTLLTLLLLLLAGDRASSNPNATSSSSQDPESLQDRGEGKVATTVISKMLFVEPILEVSSLPTTNSTTNSATKITANTTDEPTTQPTTEPTTQPTIQPTQPTTQLPTDSPTQPTTGSFCPGPVTLCSDLESHSTEAVLGDALVDFSLKLYHAFSAMKKVETNMAFSPFSIASLLTQVLLGAGENTKTNLESILSYPKDFTCVHQALKGFTTKGVTSVSQIFHSPDLAIRDTFVNASRTLYSSSPRVLSNNSDANLELINTWVAKNTNNKISRLLDSLPSDTRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFKNSVIKVPMMNSKKYPVAHFIDQTLKAKVGQLQLSHNLSLVILVPQNLKHRLEDMEQALSPSVFKAIMEKLEMSKFQPTLLTLPRIKVTTSQDMLSIMEKLEFFDFSYDLNLCGLTEDPDLQVSAMQHQTVLELTETGVEAAAASAISVARTLLVFEVQQPFLFVLWDQQHKFPVFMGRVYDPRA ignored annotation: intron 1820..3377 ignored annotation: /number=2 ignored annotation: misc_feature 2416..2454 ignored annotation: /note="putative Z-DNA" ignored annotation: exon 3378..3876 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: intron 3877..5532 ignored annotation: /number=3 ignored annotation: repeat_region 4168..5356 ignored annotation: /rpt_family="Alu" ignored annotation: exon 5533..5667 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: intron 5668..9506 ignored annotation: /number=4 ignored annotation: repeat_region 5973..9027 ignored annotation: /rpt_family="Alu" ignored annotation: exon 9507..9710 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=5 ignored annotation: /evidence=experimental ignored annotation: intron 9711..9904 ignored annotation: /number=5 ignored annotation: exon 9905..10044 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=6 ignored annotation: /evidence=experimental ignored annotation: intron 10045..15212 ignored annotation: /number=6 ignored annotation: repeat_region 11175..14726 ignored annotation: /rpt_family="Alu" ignored annotation: exon 15213..15432 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=7 ignored annotation: /evidence=experimental ignored annotation: intron 15433..17823 ignored annotation: /number=7 ignored annotation: repeat_region 15917..16541 ignored annotation: /rpt_family="Alu" ignored annotation: exon 17824..18341 ignored annotation: /note="C1 inhibitor" ignored annotation: /number=8 ignored annotation: /evidence=experimental ignored annotation: repeat_region 18394..18669 ignored annotation: /rpt_family="Alu" ignored annotation: BASE COUNT 4918 a 4535 c 4335 g 4899 t mRNA range 1183..1220 mRNA range 1747..1819 mRNA range 3378..3876 mRNA range 5533..5667 mRNA range 9507..9710 mRNA range 9905..10044 mRNA range 15213..15432 mRNA range 17824..18341 CDS range 1769..1819 CDS range 3378..3876 CDS range 5533..5667 CDS range 9507..9710 CDS range 9905..10044 CDS range 15213..15432 CDS range 17824..18077 seq_ini = 1 seq_fin = 18687 i = 18077 last codon bas = cc[tga]gac last codon lab = EF[DEF]YYY === HSCBMYHC === locus = HSCBMYHC ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="cardiac" ignored annotation: /cell_type="myocyte" ignored annotation: CAAT_signal 2456..2461 ignored annotation: TATA_signal 2510..2514 CDS = 4394..4594,4897..5040,5328..5484,5616..5643,6245..6353,6436..6528,6630..6693,7147..7245,7463..7566,8215..8353,8779..8897,9024..9173,9455..9625,10220..10529,10809..10876,11251..11338,12037..12154,12303..12426,12692..12828,13086..13341,13967..14209,14394..14570,15754..15899,17029..17119,17838..18227,18463..18589,18777..18895,19065..19261,19786..19969,20153..20318,20479..20603,21157..21465,21638..21838,21962..22087,22198..22473,23358..23453,23566..23700,24227..24244 ignored annotation: /codon_start=1 ignored annotation: /product="cardiac beta myosin heavy chain" ignored annotation: /db_xref="PID:g29727" ignored annotation: /db_xref="SWISS-PROT:P12883" translation = MGDSEMAVFGAAAPYLRKSEKERLEAQTRPFDLKKDVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKERYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRLYHPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLSRIITRIQAQSRGVLARMEYKKLLERRDSLLVIQWNIRAFMGVKNWPWMKLYFKIKPLLKSAEREKEMASMKEEFTALKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRNVEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSCQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEALISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLQAELEELRAVVEQTERSRKLADRELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGTKGLNEE ignored annotation: exon 4394..4594 ignored annotation: /number=3 ignored annotation: intron 4595..4896 ignored annotation: /number=3 ignored annotation: exon 4897..5040 ignored annotation: /number=4 ignored annotation: intron 5041..5327 ignored annotation: /number=4 ignored annotation: exon 5328..5484 ignored annotation: /number=5 ignored annotation: intron 5485..5615 ignored annotation: /number=5 ignored annotation: exon 5616..5643 ignored annotation: /number=6 ignored annotation: intron 5644..6244 ignored annotation: /number=6 ignored annotation: exon 6245..6353 ignored annotation: /number=7 ignored annotation: intron 6354..6435 ignored annotation: /number=7 ignored annotation: exon 6436..6528 ignored annotation: /number=8 ignored annotation: intron 6529..6629 ignored annotation: /number=8 ignored annotation: exon 6630..6693 ignored annotation: /number=9 ignored annotation: intron 6694..7146 ignored annotation: /number=9 ignored annotation: exon 7147..7245 ignored annotation: /number=10 ignored annotation: intron 7246..7462 ignored annotation: /number=10 ignored annotation: exon 7463..7566 ignored annotation: /number=11 ignored annotation: intron 7567..8214 ignored annotation: /number=11 ignored annotation: exon 8215..8353 ignored annotation: /number=12 ignored annotation: intron 8354..8778 ignored annotation: /number=12 ignored annotation: exon 8779..8897 ignored annotation: /number=13 ignored annotation: intron 8898..9023 ignored annotation: /number=13 ignored annotation: exon 9024..9173 ignored annotation: /number=14 ignored annotation: intron 9174..9454 ignored annotation: /number=14 ignored annotation: exon 9455..9625 ignored annotation: /number=15 ignored annotation: intron 9626..10219 ignored annotation: /number=15 ignored annotation: exon 10220..10529 ignored annotation: /number=16 ignored annotation: intron 10530..10808 ignored annotation: /number=16 ignored annotation: exon 10809..10876 ignored annotation: /number=17 ignored annotation: intron 10877..11250 ignored annotation: /number=17 ignored annotation: exon 11251..11338 ignored annotation: /number=18 ignored annotation: intron 11339..12036 ignored annotation: /number=18 ignored annotation: exon 12037..12154 ignored annotation: /number=19 ignored annotation: intron 12155..12302 ignored annotation: /number=19 ignored annotation: exon 12303..12426 ignored annotation: /number=20 ignored annotation: intron 12427..12691 ignored annotation: /number=20 ignored annotation: exon 12692..12828 ignored annotation: /number=21 ignored annotation: intron 12829..13085 ignored annotation: /number=21 ignored annotation: exon 13086..13341 ignored annotation: /number=22 ignored annotation: intron 13342..13966 ignored annotation: /number=22 ignored annotation: exon 13967..14209 ignored annotation: /number=23 ignored annotation: intron 14210..14393 ignored annotation: /number=23 ignored annotation: exon 14394..14570 ignored annotation: /number=24 ignored annotation: intron 14571..15753 ignored annotation: /number=24 ignored annotation: exon 15754..15899 ignored annotation: /number=25 ignored annotation: intron 15900..17028 ignored annotation: /number=25 ignored annotation: exon 17029..17119 ignored annotation: /number=26 ignored annotation: intron 17120..17837 ignored annotation: /number=26 ignored annotation: exon 17838..18227 ignored annotation: /number=27 ignored annotation: intron 18228..18462 ignored annotation: /number=27 ignored annotation: exon 18463..18589 ignored annotation: /number=28 ignored annotation: intron 18590..18776 ignored annotation: /number=28 ignored annotation: exon 18777..18895 ignored annotation: /number=29 ignored annotation: intron 18896..19064 ignored annotation: /number=29 ignored annotation: exon 19065..19261 ignored annotation: /number=30 ignored annotation: intron 19262..19785 ignored annotation: /number=30 ignored annotation: exon 19786..19969 ignored annotation: /number=31 ignored annotation: intron 19970..20152 ignored annotation: /number=31 ignored annotation: exon 20153..20318 ignored annotation: /number=32 ignored annotation: intron 20319..20478 ignored annotation: /number=32 ignored annotation: exon 20479..20603 ignored annotation: /number=33 ignored annotation: intron 20604..21156 ignored annotation: /number=33 ignored annotation: exon 21157..21465 ignored annotation: /number=34 ignored annotation: intron 21466..21637 ignored annotation: /number=34 ignored annotation: exon 21638..21838 ignored annotation: /number=35 ignored annotation: intron 21839..21961 ignored annotation: /number=35 ignored annotation: exon 21962..22087 ignored annotation: /number=36 ignored annotation: intron 22088..22197 ignored annotation: /number=36 ignored annotation: exon 22198..22473 ignored annotation: /number=37 ignored annotation: intron 22474..23357 ignored annotation: /number=37 ignored annotation: exon 23358..23453 ignored annotation: /number=38 ignored annotation: intron 23454..23565 ignored annotation: /number=38 ignored annotation: exon 23566..23700 ignored annotation: /number=39 ignored annotation: intron 23701..24226 ignored annotation: /number=39 ignored annotation: exon 24227..24244 ignored annotation: /number=40 ignored annotation: misc_feature 24630..25000 ignored annotation: /note="putative VECTOR sequence M13mp18" ignored annotation: /citation=[3] ignored annotation: BASE COUNT 5912 a 6790 c 6491 g 5807 t // ** orig/raws/HSCBMYHC:672: missing "mRNA" entry === HSCD14G === locus = HSCD14G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /clone_lib="(lambda)gtWes" ignored annotation: /map="long arm of chromosome 5, 5q23-q31" ignored annotation: exon 51..158 ignored annotation: /number=1 CDS = 156..158,247..1371 ignored annotation: /codon_start=1 ignored annotation: /product="cd14 protein precursor" ignored annotation: /db_xref="PID:g312399" ignored annotation: /db_xref="SWISS-PROT:P08571" translation = MERASCLLLLLLPLVHVSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFLKRVDADADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSYEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSCNRLNRAPQPDELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVGVSGTLVLLQGARGFA ignored annotation: sig_peptide join(156..158,247..300) ignored annotation: intron 159..246 ignored annotation: /number=1 ignored annotation: exon 247..1494 ignored annotation: /number=2 ignored annotation: mat_peptide 301..1368 ignored annotation: /product="cd14 protein" ignored annotation: polyA_signal 1477..1482 ignored annotation: BASE COUNT 314 a 486 c 453 g 317 t // ** orig/raws/HSCD14G:83: missing "mRNA" entry === HSCD1R3 === locus = HSCD1R3 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="B-cell prolymphatic leukaemia" ignored annotation: /cell_line="D-PLL" ignored annotation: /clone_lib="D-PLL-lambda 2001" ignored annotation: /chromosome="1" ignored annotation: /map="q22-23" mRNA = >1805..1865,2158..2424,2734..3012,3580..3858,4638..4737,4833..5598 ignored annotation: exon <1805..1865 ignored annotation: /number=1 CDS = 1805..1865,2158..2424,2734..3012,3580..3858,4638..4737,4833..4854 ignored annotation: /codon_start=1 ignored annotation: /product="cd1 r3 protein" ignored annotation: /db_xref="PID:g296639" ignored annotation: /db_xref="SWISS-PROT:P15813" translation = MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ignored annotation: intron 1866..2157 ignored annotation: /number=1 ignored annotation: exon 2158..2424 ignored annotation: /number=2 ignored annotation: intron 2425..2733 ignored annotation: /number=2 ignored annotation: exon 2734..3012 ignored annotation: /number=3 ignored annotation: intron 3013..3579 ignored annotation: /number=3 ignored annotation: exon 3580..3858 ignored annotation: /number=4 ignored annotation: intron 3859..4637 ignored annotation: /number=4 ignored annotation: exon 4638..4737 ignored annotation: /number=5 ignored annotation: intron 4738..4832 ignored annotation: /number=5 ignored annotation: exon 4833..5598 ignored annotation: /number=6 ignored annotation: polyA_signal 5580..5585 ignored annotation: BASE COUNT 1690 a 1379 c 1715 g 1541 t mRNA range 1805..1865 mRNA range 2158..2424 mRNA range 2734..3012 mRNA range 3580..3858 mRNA range 4638..4737 mRNA range 4833..5598 CDS range 1805..1865 CDS range 2158..2424 CDS range 2734..3012 CDS range 3580..3858 CDS range 4638..4737 CDS range 4833..4854 seq_ini = 1 seq_fin = 6325 i = 4854 last codon bas = tg[tga]ctc last codon lab = EF[DEF]YYY === HSCDIR2 === locus = HSCDIR2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda R2G4" ignored annotation: /cell_type="B-cell prolymphocytic leukaemia" ignored annotation: /cell_line="D-PLL" ignored annotation: /clone_lib="D-PLL-lambda 2001" ignored annotation: exon <5484..5541 ignored annotation: /number=1 CDS = 5484..5541,5901..6167,6792..7061,7319..7597,7990..8087 ignored annotation: /codon_start=1 ignored annotation: /product="cd1 r2 protein" ignored annotation: /db_xref="PID:g296640" ignored annotation: /db_xref="SWISS-PROT:P15812" translation = MLLLFLLFEGLCCPGENTAAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPFEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLIIHWGGYSIFLILICLTVIVTLVILVVVDSRLKKQR ignored annotation: intron 5542..5900 ignored annotation: /number=1 ignored annotation: exon 5901..6167 ignored annotation: /number=2 ignored annotation: intron 6168..6791 ignored annotation: /number=2 ignored annotation: exon 6792..7061 ignored annotation: /number=3 ignored annotation: intron 7062..7318 ignored annotation: /number=3 ignored annotation: exon 7319..7597 ignored annotation: /number=4 ignored annotation: intron 7598..7989 ignored annotation: /number=4 ignored annotation: exon 7990..>8087 ignored annotation: /number=5 ignored annotation: BASE COUNT 2694 a 2278 c 2257 g 3122 t // ** orig/raws/HSCDIR2:235: missing "mRNA" entry === HSCEATG === locus = HSCEATG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="EBV-immortalized lymphoblast" ignored annotation: /cell_line="AG7647 (NIGMS Repository)" ignored annotation: /clone_lib="EcoRI segment of cosmid; c103.2 from Alzheimer ignored annotation: 6 cosmid library" ignored annotation: /clone="CEA4kbN-term" ignored annotation: 5'UTR 1..2616 CDS = 2617..2680,3605..3972 ignored annotation: /codon_start=1 ignored annotation: /product="carinoembryonic antigen" ignored annotation: /db_xref="PID:e306038" ignored annotation: /db_xref="PID:g1877203" translation = MESPSAPPHRWCIPWQRLLLTASLLTFWNPPTTAKLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYRE ignored annotation: repeat_unit 3469..3500 ignored annotation: /rpt_family="(AC)" ignored annotation: BASE COUNT 1048 a 1200 c 1059 g 830 t // ** orig/raws/HSCEATG:111: missing "mRNA" entry === HSCGN3PRO === locus = HSCGN3PRO ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="11q22" ignored annotation: /clone_lib="lambda gt10" ignored annotation: promoter 303..309 ignored annotation: /note="Pea-3" ignored annotation: promoter 353..359 ignored annotation: /note="Ap-1" ignored annotation: TATA_signal 372..379 mRNA = 427..550,644..>889 ignored annotation: exon 427..550 ignored annotation: /number=1 CDS = 431..550,644..889 ignored annotation: /codon_start=1 ignored annotation: /product="collagenase 3" ignored annotation: /db_xref="PID:e118563" ignored annotation: /db_xref="PID:g1945759" translation = MHPGVLAAFLFLSWTHCRALPLPSGGDEDDLSEEDLQFAERYLRSYYHPTNLAGILKENAASSMTERLREMQSFFGLEVTGKLDDNTLDVMKKPRCGVPDVGEYNVFPRTLKWSKMNLTYR ignored annotation: intron 551..643 ignored annotation: /number=1 ignored annotation: exon 644..889 ignored annotation: /number=2 ignored annotation: BASE COUNT 367 a 239 c 235 g 361 t mRNA range 427..550 mRNA range 644..889 CDS range 431..550 CDS range 644..889 seq_ini = 1 seq_fin = 1202 i = 889 last codon bas = gg[taa]atc last codon lab = EF[DEF]NNN === HSCKBG === locus = HSCKBG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="CK3-1" ignored annotation: /tissue_type="brain" ignored annotation: /clone_lib="EMBL3" ignored annotation: /map="chromosome 14q32.3" ignored annotation: CAAT_signal 724..728 ignored annotation: TATA_signal 742..749 ignored annotation: CAAT_signal 754..758 ignored annotation: exon 808..875 ignored annotation: /number=1 mRNA = 808..875,1136..1340,1464..1618,1691..1823,2208..2379,3050..3173,3331..3520,3600..4075 ignored annotation: intron 876..1135 ignored annotation: /number=1 ignored annotation: exon 1136..1340 ignored annotation: /number=2 CDS = 1148..1340,1464..1618,1691..1823,2208..2379,3050..3173,3331..3520,3600..3778 ignored annotation: /EC_number="2.7.3.2" ignored annotation: /codon_start=1 ignored annotation: /product="creatine kinase B" ignored annotation: /db_xref="PID:g29963" ignored annotation: /db_xref="SWISS-PROT:P12277" translation = MPFSNSHNALKLRFPAEDEFPDLSAHNNHMAKVLTPELYAELRAKSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKPSDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKDYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMPAQK ignored annotation: intron 1341..1463 ignored annotation: /number=2 ignored annotation: exon 1464..1618 ignored annotation: /number=3 ignored annotation: intron 1619..1690 ignored annotation: /number=3 ignored annotation: exon 1691..1823 ignored annotation: /number=4 ignored annotation: intron 1824..2207 ignored annotation: /number=4 ignored annotation: exon 2208..2379 ignored annotation: /number=5 ignored annotation: intron 2380..3049 ignored annotation: /number=5 ignored annotation: exon 3050..3173 ignored annotation: /number=6 ignored annotation: intron 3174..3330 ignored annotation: /number=6 ignored annotation: exon 3331..3520 ignored annotation: /number=7 ignored annotation: intron 3521..3599 ignored annotation: /number=7 ignored annotation: exon 3600..4075 ignored annotation: /number=8 ignored annotation: polyA_signal 3952..3957 ignored annotation: BASE COUNT 586 a 1443 c 1477 g 694 t mRNA range 808..875 mRNA range 1136..1340 mRNA range 1464..1618 mRNA range 1691..1823 mRNA range 2208..2379 mRNA range 3050..3173 mRNA range 3331..3520 mRNA range 3600..4075 CDS range 1148..1340 CDS range 1464..1618 CDS range 1691..1823 CDS range 2208..2379 CDS range 3050..3173 CDS range 3331..3520 CDS range 3600..3778 seq_ini = 1 seq_fin = 4200 i = 3778 last codon bas = aa[tga]agc last codon lab = EF[DEF]YYY === HSCKIIBE === locus = HSCKIIBE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: GC_signal 328..332 ignored annotation: GC_signal 414..418 ignored annotation: CAAT_signal 481..487 ignored annotation: GC_signal 589..593 ignored annotation: exon 683..1011 ignored annotation: /note="casein kinase II subunit beta" ignored annotation: /number=1 mRNA = 683..1011,1623..1705,2672..2774,3344..3459,3906..3981,4128..4317,4645..4875 ignored annotation: /note="casein kinase II subunit beta; major start sites" ignored annotation: /evidence=experimental ignored annotation: GC_signal 698..702 mRNA join(715..1011,1623..1705,2672..2774,3344..3459, ** orig/raws/HSCKIIBE:45: more than one "mRNA" entry === HSCOMT2 === locus = HSCOMT2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: intron 1..984 ignored annotation: exon 985..1074 ignored annotation: intron 1075..1340 ignored annotation: promoter 1120..1490 ignored annotation: exon 1341..1629 CDS = 1341..1629,1765..1958,2246..2377,2839..3039 ignored annotation: /codon_start=1 ignored annotation: /product="catechol O-methyltransferase" ignored annotation: /db_xref="PID:g403304" ignored annotation: /db_xref="SWISS-PROT:P21964" translation = MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP ignored annotation: misc_signal 1341..1343 ignored annotation: misc_signal 1491..1493 ignored annotation: intron 1630..1764 ignored annotation: exon 1765..1958 ignored annotation: intron 1959..2245 ignored annotation: exon 2246..2377 ignored annotation: intron 2378..2838 ignored annotation: exon 2839..3304 ignored annotation: misc_signal 3037..3039 ignored annotation: polyA_signal 3305..3310 ignored annotation: BASE COUNT 758 a 1063 c 1059 g 771 t // ** orig/raws/HSCOMT2:128: missing "mRNA" entry === HSCOSE === locus = HSCOSE ignored annotation: /organism="Homo sapiens" ignored annotation: /isolate="Diabetes insipidus patient IV-3" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="blood" ignored annotation: /cell_type="leukocyte" ignored annotation: /clone_lib="subgenomic plasmid library" ignored annotation: /clone="IV-3-3" ignored annotation: /chromosome="20" ignored annotation: TATA_signal 1059..1065 ignored annotation: gene 1139..3244 ignored annotation: /gene="coseg" CDS = 1139..1258,2635..2836,3012..3184 ignored annotation: /gene="coseg" ignored annotation: /codon_start=1 ignored annotation: /product="vasopressin-neurophysin precursor" ignored annotation: /db_xref="PID:g30136" ignored annotation: /db_xref="SWISS-PROT:P01185" translation = MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGVKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGFHRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY ignored annotation: exon 1139..1258 ignored annotation: /gene="coseg" ignored annotation: /number=1 mRNA = 1139..1258,2635..2836,3012..3244 ignored annotation: /gene="coseg" ignored annotation: intron 1259..2634 ignored annotation: /gene="coseg" ignored annotation: /number=1 ignored annotation: exon 2635..2836 ignored annotation: /gene="coseg" ignored annotation: /number=2 ignored annotation: allele 2657 ignored annotation: /gene="coseg" ignored annotation: /note="nucleotide different from normal allele in ADNDI ignored annotation: patient" ignored annotation: intron 2837..3011 ignored annotation: /gene="coseg" ignored annotation: /number=2 ignored annotation: misc_feature 2872 ignored annotation: /gene="coseg" ignored annotation: /note="insertion in ADNDI patient compared to normal ignored annotation: allele" ignored annotation: exon 3012..3244 ignored annotation: /gene="coseg" ignored annotation: /number=3 ignored annotation: BASE COUNT 592 a 1158 c 1167 g 605 t mRNA range 1139..1258 mRNA range 2635..2836 mRNA range 3012..3244 CDS range 1139..1258 CDS range 2635..2836 CDS range 3012..3184 seq_ini = 1 seq_fin = 3522 i = 3184 last codon bas = ac[tga]gcc last codon lab = EF[DEF]YYY === HSCPH70 === locus = HSCPH70 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="CPH-70" ignored annotation: /cell_type="leucocyte" ignored annotation: /clone_lib="Lambda EMBL3" ignored annotation: misc_feature 71..360 ignored annotation: /note="Alu repeat" ignored annotation: misc_feature 361..562 ignored annotation: /note="Alu repeat" ignored annotation: protein_bind 781..790 ignored annotation: /note="SP1 binding domain" ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1371..1380 ignored annotation: /note="SP1 binding domain" ignored annotation: /bound_moiety="Sp1" ignored annotation: TATA_signal 1585..1591 ignored annotation: exon 1616..1728 ignored annotation: /number=1 mRNA = 1616..1728,4173..4203,4318..4406,4628..4800,6215..6561 CDS = 1660..1728,4173..4203,4318..4406,4628..4800,6215..6350 ignored annotation: /EC_number="5.2.1.8" ignored annotation: /codon_start=1 ignored annotation: /product="peptidylprolyl isomerase" ignored annotation: /db_xref="PID:g30168" ignored annotation: /db_xref="SWISS-PROT:P05092" translation = MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE ignored annotation: intron 1729..4172 ignored annotation: /number=1 ignored annotation: misc_feature 2054..2063 ignored annotation: /note="general enhancer core" ignored annotation: protein_bind 2522..2537 ignored annotation: /note="NP1 binding domain" ignored annotation: /bound_moiety="NP1" ignored annotation: misc_feature 3207..3445 ignored annotation: /note="Alu repeat" ignored annotation: protein_bind 4094..4100 ignored annotation: /note="AP1 binding domain" ignored annotation: /bound_moiety="AP1" ignored annotation: exon 4173..4203 ignored annotation: /number=2 ignored annotation: intron 4204..4317 ignored annotation: /number=2 ignored annotation: exon 4318..4406 ignored annotation: /number=3 ignored annotation: intron 4407..4627 ignored annotation: /number=3 ignored annotation: exon 4628..4800 ignored annotation: /number=4 ignored annotation: intron 4801..6214 ignored annotation: /number=4 ignored annotation: misc_feature 5026..5314 ignored annotation: /note="Alu repeat" ignored annotation: misc_feature 5340..5626 ignored annotation: /note="Alu repeat" ignored annotation: misc_feature 5755..6043 ignored annotation: /note="Alu repeat" ignored annotation: exon 6215..6561 ignored annotation: /number=5 ignored annotation: polyA_signal 6538..6543 ignored annotation: BASE COUNT 1552 a 1625 c 1717 g 1817 t mRNA range 1616..1728 mRNA range 4173..4203 mRNA range 4318..4406 mRNA range 4628..4800 mRNA range 6215..6561 CDS range 1660..1728 CDS range 4173..4203 CDS range 4318..4406 CDS range 4628..4800 CDS range 6215..6350 seq_ini = 1 seq_fin = 6711 i = 6350 last codon bas = aa[taa]gtt last codon lab = EF[DEF]YYY === HSCRTRGN === locus = HSCRTRGN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="cosmid IDs: 8B7" ignored annotation: /clone_lib="QIZ, X chromosome specific library" ignored annotation: /chromosome="X" ignored annotation: /map="q28" ignored annotation: prim_transcript <2202..>10685 CDS = 2675..2936,4475..4606,5404..5653,6075..6207,7141..7275,7363..7466,7562..7686,8005..8117,8230..8367,8444..8546,8633..8733,8819..8989,9174..9314 ignored annotation: /codon_start=1 ignored annotation: /product="creatine transporter" ignored annotation: /db_xref="PID:e206450" ignored annotation: /db_xref="PID:g1628387" ignored annotation: /db_xref="SWISS-PROT:P48029" translation = MAKKSAENGIYSVSGDEKKGPLIAPGPDGAPAKGDGPVGLGTPGGRLAVPPRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEISLGQFMKAGSINVWNICPLFKGLGYASMVIVFYCNTYYIMVLAWGFYYLVKSFTTTLPWATCGHTWNTPDCVEIFRHEDCANASLANLTCDQLADRRSPVIEFWENKVLRLSGGLEVPGALNWEVTLCLLACWVLVYFCVWKGVKSTGKIVYFTATFPYVVLVVLLVRGVLLPGALDGIIYYLKPDWSKLGSPQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNNCYKDAIILALINSGTSFFAGFVVFSILGFMAAEQGVHISKVAESGPGLAFIAYPRAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGLLDLLPASYYFRFQREISVALCCALCFVIDLSMVTDGGMYVFQLFDYYSASGTTLLWQAFWECVVVAWVYGADRFMDDIACMIGYRPCPWMKWCWSFFTPLVCMGIFIFNVVYYEPLVYNNTYVYPWWGEAMGWAFALSSMLCVPLHLLGCLLRAKGTMAERWQHLTQPIWGLHHLEYRAQDADVRGLTTLTPVSESSKVVVVESVM ignored annotation: polyA_signal 10034..10038 ignored annotation: /note="putative" ignored annotation: polyA_signal 10665..10670 ignored annotation: /note="putative" ignored annotation: BASE COUNT 1994 a 3474 c 3479 g 2053 t // ** orig/raws/HSCRTRGN:248: missing "mRNA" entry === HSCSRP2S2 === locus = HSCSRP2S2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="ICRFP700J1150Q06" mRNA = U95017:874..955,404..516,3304..3472,6235..6364,7008..7101,7619..7931 ignored annotation: /gene="CSRP2" ignored annotation: /note="CRP2" ignored annotation: /product="cysteine and glycine-rich protein 2" ignored annotation: gene join(U95017:874..1178,1..7942) ignored annotation: /gene="CSRP2" ignored annotation: intron <1..403 ignored annotation: /gene="CSRP2" ignored annotation: /number=1 ignored annotation: exon 404..516 ignored annotation: /gene="CSRP2" ignored annotation: /number=2 CDS = 405..516,3304..3472,6235..6364,7008..7101,7619..7695 ignored annotation: /gene="CSRP2" ignored annotation: /note="CRP2" ignored annotation: /codon_start=1 ignored annotation: /product="cysteine and glycine-rich protein 2" ignored annotation: /db_xref="PID:g2078339" translation = MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ ignored annotation: intron 517..3303 ignored annotation: /gene="CSRP2" ignored annotation: /number=2 ignored annotation: exon 3304..3472 ignored annotation: /gene="CSRP2" ignored annotation: /number=3 ignored annotation: intron 3473..6234 ignored annotation: /gene="CSRP2" ignored annotation: /number=3 ignored annotation: exon 6235..6364 ignored annotation: /gene="CSRP2" ignored annotation: /number=4 ignored annotation: intron 6365..7007 ignored annotation: /gene="CSRP2" ignored annotation: /number=4 ignored annotation: exon 7008..7101 ignored annotation: /gene="CSRP2" ignored annotation: /number=5 ignored annotation: intron 7102..7618 ignored annotation: /gene="CSRP2" ignored annotation: /number=5 ignored annotation: exon 7619..7931 ignored annotation: /gene="CSRP2" ignored annotation: /number=6 ignored annotation: polyA_signal 7915..7920 ignored annotation: /gene="CSRP2" ignored annotation: 3'clip 7932..7942 ignored annotation: /gene="CSRP2" ignored annotation: BASE COUNT 2311 a 1595 c 1552 g 2484 t // ** orig/raws/HSCSRP2S2:220: bad range format "U95017:874..955" === HSCST3G === locus = HSCST3G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda C3" ignored annotation: /cell_type="leukocyte" ignored annotation: /clone_lib="Charon 4A" ignored annotation: /chromosome="20" ignored annotation: GC_signal 352..357 ignored annotation: GC_signal 939..944 ignored annotation: TATA_signal 960..965 ignored annotation: prim_transcript 1010..5287 mRNA = 1010..1327,3580..3693,4948..5287 ignored annotation: exon 1010..1327 ignored annotation: /number=1 CDS = 1085..1327,3580..3693,4948..5031 ignored annotation: /codon_start=1 ignored annotation: /product="cystatin C" ignored annotation: /db_xref="PID:g296643" ignored annotation: /db_xref="SWISS-PROT:P01034" translation = MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQDA ignored annotation: sig_peptide 1085..1162 ignored annotation: mat_peptide join(1163..1327,3580..3693,4948..5028) ignored annotation: /product="cystatin C" ignored annotation: intron 1328..3579 ignored annotation: /number=1 ignored annotation: exon 3580..3693 ignored annotation: /number=2 ignored annotation: intron 3694..4947 ignored annotation: /number=2 ignored annotation: exon 4948..5287 ignored annotation: /number=3 ignored annotation: polyA_signal 5271..5276 ignored annotation: BASE COUNT 1508 a 1881 c 2316 g 1587 t mRNA range 1010..1327 mRNA range 3580..3693 mRNA range 4948..5287 CDS range 1085..1327 CDS range 3580..3693 CDS range 4948..5031 seq_ini = 1 seq_fin = 7292 i = 5031 last codon bas = cc[tag]ggg last codon lab = EF[DEF]YYY === HSCST4 === locus = HSCST4 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /germline ignored annotation: /cell_type="blood leukocyte" ignored annotation: /clone_lib="Charon 4A" ignored annotation: /clone="ChC21" ignored annotation: GC_signal 344..349 ignored annotation: TATA_signal 389..393 ignored annotation: /note="tata box-like sequence" ignored annotation: exon <489..719 ignored annotation: /gene="CST4" ignored annotation: /number=1 mRNA = <489..719,2546..2659,3894..>3977 ignored annotation: /gene="CST4" ignored annotation: gene 489..3977 ignored annotation: /gene="CST4" CDS = 489..719,2546..2659,3894..3977 ignored annotation: /gene="CST4" ignored annotation: /codon_start=1 ignored annotation: /product="cystatin D" ignored annotation: /db_xref="PID:g30264" ignored annotation: /db_xref="SWISS-PROT:P28325" translation = MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQCALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYKCRKV ignored annotation: intron 720..2545 ignored annotation: /gene="CST4" ignored annotation: /number=1 ignored annotation: exon 2546..2659 ignored annotation: /gene="CST4" ignored annotation: /number=2 ignored annotation: intron 2660..3893 ignored annotation: /gene="CST4" ignored annotation: /number=2 ignored annotation: exon 3894..>3977 ignored annotation: /gene="CST4" ignored annotation: /number=3 ignored annotation: polyA_signal 4212..4218 ignored annotation: BASE COUNT 895 a 1115 c 1236 g 1039 t mRNA range 489..719 mRNA range 2546..2659 mRNA range 3894..3977 CDS range 489..719 CDS range 2546..2659 CDS range 3894..3977 seq_ini = 1 seq_fin = 4285 i = 3977 last codon bas = tc[tag]ggg last codon lab = EF[DEF]NNN === HSCTAS === locus = HSCTAS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="Lymphocyte" ignored annotation: /clone_lib="Clontech-Human lymphocyte genomic" ignored annotation: /clone="HGLG3" mRNA = 1..331,2576..2618,2901..3042,4294..4451,6647..6775,6984..7113,8979..9132,9539..9967 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: exon 1..331 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=1 ignored annotation: gene 1..9967 ignored annotation: /gene="Human cone transducin alpha subunit" CDS = 214..331,2576..2618,2901..3042,4294..4451,6647..6775,6984..7113,8979..9132,9539..9729 ignored annotation: /partial ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g732760" translation = MGSGASAEDKELAKRSKELEKKLQEDADKEAKTVKLLLLGAGESGKSTIVKQMKIIHQDGYSPEECLEFKAIIYGNVLQSILAIIRAMTTLGIDYAEPSCADDGRQLNNLADSIEEGTMPPELVEVIRRLWKDGGVQACFERAAEYQLNDSASYYLNQLERITDPEYLPSEQDVLRSRVKTTGIIETKFSVKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLNKKDLFEEKIKKVHLSICFPEYDGNNSYDDAGNYIKSQFLDLNMRKDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF ignored annotation: intron 332..2575 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=1 ignored annotation: exon 2576..2618 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=2 ignored annotation: intron 2619..2900 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=2 ignored annotation: exon 2901..3042 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=3 ignored annotation: intron 3043..4293 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=3 ignored annotation: exon 4294..4451 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=4 ignored annotation: intron 4452..6646 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=4 ignored annotation: exon 6647..6775 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=5 ignored annotation: intron 6776..6983 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=5 ignored annotation: exon 6984..7113 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=6 ignored annotation: intron 7114..8978 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=6 ignored annotation: exon 8979..9132 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=7 ignored annotation: intron 9133..9538 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=7 ignored annotation: exon 9539..9967 ignored annotation: /gene="Human cone transducin alpha subunit" ignored annotation: /number=8 ignored annotation: BASE COUNT 2912 a 2249 c 2166 g 2640 t mRNA range 1..331 mRNA range 2576..2618 mRNA range 2901..3042 mRNA range 4294..4451 mRNA range 6647..6775 mRNA range 6984..7113 mRNA range 8979..9132 mRNA range 9539..9967 CDS range 214..331 CDS range 2576..2618 CDS range 2901..3042 CDS range 4294..4451 CDS range 6647..6775 CDS range 6984..7113 CDS range 8979..9132 CDS range 9539..9729 seq_ini = 1 seq_fin = 9967 i = 9729 last codon bas = tc[taa]tcc last codon lab = EF[DEF]YYY === HSCYCLA === locus = HSCYCLA ignored annotation: /organism="Homo sapiens" ignored annotation: /isolate="FR" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="Placental Tissue" ignored annotation: /clone="#492" ignored annotation: prim_transcript 877 ignored annotation: /note="alt. transcription start site" ignored annotation: prim_transcript 925 ignored annotation: /note="alt. transcription start site" ignored annotation: exon <1180..1392 ignored annotation: /gene="cycA" ignored annotation: /number=1 ignored annotation: gene 1180..7072 ignored annotation: /gene="cycA" CDS = 1180..1392,2162..2405,3618..3730,3944..4167,5130..5337,5797..5910,6533..6666,7024..7072 ignored annotation: /gene="cycA" ignored annotation: /codon_start=1 ignored annotation: /product="cyclin A" ignored annotation: /db_xref="PID:g510604" ignored annotation: /db_xref="SWISS-PROT:P20248" translation = MLGNSAPGPATREAGSALLALQQTALQEDQENINPEKAAPVQQPRTRAALAVLKSGNPRGLAQQQRPKTRRVAPLKDLPVNDEHVTVPPWKANSKQPAFTIHVDEAEKEAQKKPAESQKIEREDALAFNSAISLPGPRKPLVPLDYPMDGSFESPHTMDMSIVLEDEKPVSVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNL ignored annotation: intron 1393..2161 ignored annotation: /gene="cycA" ignored annotation: /number=1 ignored annotation: exon 2162..2405 ignored annotation: /gene="cycA" ignored annotation: /number=2 ignored annotation: intron 2406..3617 ignored annotation: /gene="cycA" ignored annotation: /number=2 ignored annotation: exon 3618..3730 ignored annotation: /gene="cycA" ignored annotation: /number=3 ignored annotation: intron 3731..3943 ignored annotation: /gene="cycA" ignored annotation: /number=3 ignored annotation: exon 3944..4167 ignored annotation: /gene="cycA" ignored annotation: /number=4 ignored annotation: intron 4168..5129 ignored annotation: /gene="cycA" ignored annotation: /number=4 ignored annotation: exon 5130..5337 ignored annotation: /gene="cycA" ignored annotation: /number=5 ignored annotation: intron 5338..5796 ignored annotation: /gene="cycA" ignored annotation: /number=5 ignored annotation: exon 5797..5910 ignored annotation: /gene="cycA" ignored annotation: /number=6 ignored annotation: intron 5911..6532 ignored annotation: /gene="cycA" ignored annotation: /number=6 ignored annotation: exon 6533..6666 ignored annotation: /gene="cycA" ignored annotation: /number=7 ignored annotation: intron 6667..7023 ignored annotation: /gene="cycA" ignored annotation: /number=7 ignored annotation: exon 7024..>7072 ignored annotation: /gene="cycA" ignored annotation: /number=8 ignored annotation: prim_transcript 7341 ignored annotation: /note="alt. transcription stop site" ignored annotation: prim_transcript 8266 ignored annotation: /note="alt. transcription stop site" ignored annotation: BASE COUNT 2448 a 1521 c 1761 g 2633 t // ** orig/raws/HSCYCLA:241: missing "mRNA" entry === HSCYP450 === locus = HSCYP450 ignored annotation: /organism="Homo sapiens" ignored annotation: /strain="Breast carcinoma cell line, MCF-7" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 1050..1146 ignored annotation: /note="97 bp region with 88% homology to mouse P(1)-450 5' ignored annotation: region" ignored annotation: misc_feature 1197..1252 ignored annotation: /note="56 bp region 76% homologue to mouse P(1)-450 5' ignored annotation: region" ignored annotation: misc_feature 1282..1364 ignored annotation: /note="82 bp region 71% homologue to mouse P(1)-450 5' ignored annotation: region" ignored annotation: misc_feature 1544..1604 ignored annotation: /note="61 bp region 85% homologue to mouse P(1)-450 5' ignored annotation: region" ignored annotation: precursor_RNA 1599..7915 ignored annotation: /note="cytochrome P(1)-450 primary transcript" mRNA = 1599..1694 ignored annotation: /note="exon 1" ignored annotation: intron 1695..4338 ignored annotation: /note="intron I" mRNA 4339..5189 ** orig/raws/HSCYP450:40: more than one "mRNA" entry === HSCYTOK17 === locus = HSCYTOK17 ignored annotation: /organism="Homo sapiens" ignored annotation: /strain="Cytokeratin 17" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 51..56 mRNA = 85..580,1626..1708,2147..2303,2904..3065,3567..3692,3779..3999,4100..4122,4970..5219 ignored annotation: prim_transcript 85..5219 ignored annotation: /citation=[1] ignored annotation: exon 85..580 ignored annotation: /number=1 CDS = 149..580,1626..1708,2147..2303,2904..3065,3567..3692,3779..3999,4100..4122,4970..5064 ignored annotation: /function="intermediate filament protein" ignored annotation: /citation=[1] ignored annotation: /codon_start=1 ignored annotation: /product="cytokeratin 17" ignored annotation: /db_xref="PID:g30379" ignored annotation: /db_xref="SWISS-PROT:Q04695" translation = MTTSIRQFTSSSSIKGSSGLGGGSSRTSCRLSGGLGAGSCRLGSAGGLGSTLGGSSYSSCYSFGSGGGYGSSFGGVDGLLAGGEKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQAPGPARDYSQYYRTIEELQNKILTATVDNANILLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARADLEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASLEGNLAETENRYCVQLSQIQGLIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEGEDAHLTQYKKEPVTTRQVRTIVEEVQDGKVISSREQVHQTTR ignored annotation: intron 581..1625 ignored annotation: /number=1 ignored annotation: exon 1626..1708 ignored annotation: /number=2 ignored annotation: intron 1709..2146 ignored annotation: /number=2 ignored annotation: exon 2147..2303 ignored annotation: /number=3 ignored annotation: intron 2304..2903 ignored annotation: /number=3 ignored annotation: exon 2904..3065 ignored annotation: /number=4 ignored annotation: intron 3066..3566 ignored annotation: /number=4 ignored annotation: exon 3567..3692 ignored annotation: /number=5 ignored annotation: intron 3693..3778 ignored annotation: /number=5 ignored annotation: exon 3779..3999 ignored annotation: /number=6 ignored annotation: intron 4000..4099 ignored annotation: /number=6 ignored annotation: exon 4100..4122 ignored annotation: /number=7 ignored annotation: intron 4123..4969 ignored annotation: /number=7 ignored annotation: exon 4970..5219 ignored annotation: /number=8 ignored annotation: terminator 5062..5064 ignored annotation: polyA_signal 5194..5199 ignored annotation: BASE COUNT 1086 a 1361 c 1716 g 1097 t mRNA range 85..580 mRNA range 1626..1708 mRNA range 2147..2303 mRNA range 2904..3065 mRNA range 3567..3692 mRNA range 3779..3999 mRNA range 4100..4122 mRNA range 4970..5219 CDS range 149..580 CDS range 1626..1708 CDS range 2147..2303 CDS range 2904..3065 CDS range 3567..3692 CDS range 3779..3999 CDS range 4100..4122 CDS range 4970..5064 seq_ini = 1 seq_fin = 5260 i = 5064 last codon bas = gc[tga]gga last codon lab = EF[DEF]YYY === HSCYTOK20 === locus = HSCYTOK20 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="Intestine" CDS = 4891..5280,7429..7511,9313..9469,9822..9983,10145..10270,11719..11939,12667..12704,13626..13723 ignored annotation: /function="intermadiate filament" ignored annotation: /codon_start=1 ignored annotation: /product="cytokeratin 20" ignored annotation: /db_xref="PID:g402645" ignored annotation: /db_xref="SWISS-PROT:P35900" translation = MDFSRRSFHRSLSSSLQAPVVSTVGMQRLGTTPSVYGGAGGRGIRISNSRHTVNYGSDLTGGGDLFVGNEKMAMQNLNDRLASYLEKVRTLEQSNSKLEVQIKQWYETNAPRAGRDYSAYYRQIEELRSQIKDAQLQNARCVLQIDNAKLAAEDFRLKYETERGIRLTVEADLQGLNKVFDDLTLHKTDLEIQIEELNKDLALLKKEHQEEVDGLHKHLGNTVNVEVDAAPGLNLGVIMNEMRQKYEVMAQKNLQEAKEQFERQTAVLQQQVTVNTEELKGTEVQLTELRRTSQSLEIELQSHLSMKESLEHTLEETKARYSSQLANLQSLLSSLEAQLMQIRSNMERQNNEYHILLDIKTRLEQEIATYRRLLEGEDVKTTEYQLSTLEERDIKKTRKIKTVVQEVVDGKVVSSEVKEVEENI ignored annotation: exon <4891..5280 ignored annotation: /number=1 ignored annotation: intron 5281..7428 ignored annotation: /number=1 ignored annotation: exon 7429..7511 ignored annotation: /number=2 ignored annotation: intron 7512..9312 ignored annotation: /number=2 ignored annotation: exon 9313..9469 ignored annotation: /number=3 ignored annotation: intron 9470..9821 ignored annotation: /number=3 ignored annotation: exon 9822..9983 ignored annotation: /number=4 ignored annotation: intron 9984..10144 ignored annotation: /number=4 ignored annotation: exon 10145..10270 ignored annotation: /number=5 ignored annotation: intron 10271..11718 ignored annotation: /number=5 ignored annotation: exon 11719..11939 ignored annotation: /number=6 ignored annotation: intron 11940..12666 ignored annotation: /number=6 ignored annotation: exon 12667..12704 ignored annotation: /number=7 ignored annotation: intron 12705..13625 ignored annotation: /number=7 ignored annotation: exon 13626..>13723 ignored annotation: /number=8 ignored annotation: terminator 13721..13723 ignored annotation: BASE COUNT 5854 a 3590 c 3325 g 5292 t // ** orig/raws/HSCYTOK20:378: missing "mRNA" entry === HSDAO === locus = HSDAO ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /chromosome="7" ignored annotation: /map="q35" ignored annotation: exon 901..955 ignored annotation: /number=1 mRNA = 901..955,4840..6425,7145..7430,8880..9012,9322..9668 ignored annotation: /product="amiloride binding protein" ignored annotation: intron 956..4839 ignored annotation: /number=1 ignored annotation: exon 4840..6425 ignored annotation: /number=2 CDS = 4856..6425,7145..7430,8880..9012,9322..9588 ignored annotation: /codon_start=1 ignored annotation: /product="amiloride binding protein" ignored annotation: /db_xref="PID:g463243" ignored annotation: /db_xref="SWISS-PROT:P19801" translation = MPALGWAVAAILMLQTAMAEPSPGTLPRKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPVREARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAPRGVASGQRRSWLIIQRYVEGYFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNYDYIWDFIFYPNGVMEAKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWHPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTVIVWPRDNGPNYVQRWIPEDRDCSMPPPFSYNGTYRPV ignored annotation: intron 6426..7144 ignored annotation: /number=2 ignored annotation: exon 7145..7430 ignored annotation: /number=3 ignored annotation: intron 7431..8879 ignored annotation: /number=3 ignored annotation: exon 8880..9012 ignored annotation: /number=4 ignored annotation: intron 9013..9321 ignored annotation: /number=4 ignored annotation: exon 9322..9668 ignored annotation: /number=5 ignored annotation: BASE COUNT 2526 a 2646 c 2664 g 2067 t mRNA range 901..955 mRNA range 4840..6425 mRNA range 7145..7430 mRNA range 8880..9012 mRNA range 9322..9668 CDS range 4856..6425 CDS range 7145..7430 CDS range 8880..9012 CDS range 9322..9588 seq_ini = 1 seq_fin = 9903 i = 9588 last codon bas = tg[tga]cca last codon lab = EF[DEF]YYY === HSDNAAMHI === locus = HSDNAAMHI ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="12" ignored annotation: /map="q13" ignored annotation: misc_feature 464..472 ignored annotation: /note="SF-1 response element" mRNA = 734..860,1165..1347,1586..1777,2042..2119,2332..2450,2566..2796,5773..5887,6330..6502,6708..6855,7023..7159,8056..8407 ignored annotation: exon 734..860 ignored annotation: /number=1 CDS = 812..860,1165..1347,1586..1777,2042..2119,2332..2450,2566..2796,5773..5887,6330..6502,6708..6855,7023..7159,8056..8352 ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="anti-mullerian hormone type II receptor" ignored annotation: /db_xref="PID:e185726" ignored annotation: /db_xref="PID:g1212944" translation = MLGSLGLWALLPTAVEAPPNRRTCVFFEAPGVRGSTKTLGELLDTGTELPRAIRCLYSRCCFGIWNLTQDRAQVEMQGCRDSDEPGCESLHCDPSPRAHPSPGSTLFTCSCGTDFCNANYSHLPPPGSPGTPGSQGPQAAPGESIWMALVLLGLFLLLLLLLGSIILALLQRKNYRVRGEPVPEPRPDSGRDWSVELQELPELCFSQVIREGGHAVVWAGQLQGKLVAIKAFPPRSVAQFQAERALYELPGLQHDHIVRFITASRGGPGRLLSGPLLVLELHPKGSLCHYLTQYTSDWGSSLRMALSLAQGLAFLHEERWQNGQYKPGIAHRDLSSQNVLIREDGSCAIGDLGLALVLPGLTQPPAWTPTQPQGPAAIMEAGTQRYMAPELLDKTLDLQDWGMALRRADIYSLALLLWEILSRCPDLRPDSSPPPFQLAYEAELGNTPTSDELWALAVQERRRPYIPSTWRCFATDPDGLRELLEDCWDADPEARLTAECVQQRLAALAHPQESHPFPESCPRGCPPLCPEDCTSIPAPTILPCRPQRSACHFSVQQGPCSRNPQPACTLSPV ignored annotation: sig_peptide 812..862 ignored annotation: sig_peptide join(812..860,1165..1166) ignored annotation: intron 861..1164 ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: exon 1165..1347 ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: intron 1348..1585 ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: exon 1586..1777 ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: intron 1778..2041 ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: exon 2042..2119 ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: intron 2120..2331 ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: exon 2332..2450 ignored annotation: /number=5 ignored annotation: /evidence=experimental ignored annotation: intron 2451..2565 ignored annotation: /number=5 ignored annotation: /evidence=experimental ignored annotation: exon 2566..2796 ignored annotation: /number=6 ignored annotation: /evidence=experimental ignored annotation: intron 2797..5772 ignored annotation: /number=6 ignored annotation: /evidence=experimental ignored annotation: exon 5773..5887 ignored annotation: /number=7 ignored annotation: /evidence=experimental ignored annotation: intron 5888..6329 ignored annotation: /number=7 ignored annotation: /evidence=experimental ignored annotation: exon 6330..6502 ignored annotation: /number=8 ignored annotation: /evidence=experimental ignored annotation: intron 6503..6707 ignored annotation: /number=8 ignored annotation: /evidence=experimental ignored annotation: exon 6708..6855 ignored annotation: /number=9 ignored annotation: /evidence=experimental ignored annotation: intron 6856..7022 ignored annotation: /number=9 ignored annotation: /evidence=experimental ignored annotation: exon 7023..7159 ignored annotation: /number=10 ignored annotation: /evidence=experimental ignored annotation: intron 7160..8055 ignored annotation: /number=10 ignored annotation: /evidence=experimental ignored annotation: exon 8056..8407 ignored annotation: /number=11 ignored annotation: polyA_signal 8389..8393 ignored annotation: BASE COUNT 1932 a 2262 c 2140 g 2073 t mRNA range 734..860 mRNA range 1165..1347 mRNA range 1586..1777 mRNA range 2042..2119 mRNA range 2332..2450 mRNA range 2566..2796 mRNA range 5773..5887 mRNA range 6330..6502 mRNA range 6708..6855 mRNA range 7023..7159 mRNA range 8056..8407 CDS range 812..860 CDS range 1165..1347 CDS range 1586..1777 CDS range 2042..2119 CDS range 2332..2450 CDS range 2566..2796 CDS range 5773..5887 CDS range 6330..6502 CDS range 6708..6855 CDS range 7023..7159 CDS range 8056..8352 seq_ini = 1 seq_fin = 8407 i = 8352 last codon bas = tg[taa]ata last codon lab = EF[DEF]YYY === HSDNAMIA === locus = HSDNAMIA ignored annotation: /organism="Homo sapiens" ignored annotation: /variety="caucasian" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /tissue_type="placenta" ignored annotation: /clone_lib="lambda FIX II" mRNA = 1316..1513,1595..1728,2812..2922,3240..3334 ignored annotation: /gene="MIA" ignored annotation: exon 1316..1513 ignored annotation: /gene="MIA" ignored annotation: /number=1 ignored annotation: gene 1316..3334 ignored annotation: /gene="MIA" CDS = 1387..1513,1595..1728,2812..2922,3240..3263 ignored annotation: /gene="MIA" ignored annotation: /function="melanoma inhibitory activity" ignored annotation: /codon_start=1 ignored annotation: /product="melanoma growth regulatory protein" ignored annotation: /db_xref="PID:g683460" translation = MARSLVCLGVIILLSAFSGPGVRGGPMPKLADRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVDVKTDKWDFYCQ ignored annotation: intron 1514..1594 ignored annotation: /gene="MIA" ignored annotation: /number=1 ignored annotation: exon 1595..1728 ignored annotation: /gene="MIA" ignored annotation: /number=2 ignored annotation: intron 1729..2811 ignored annotation: /gene="MIA" ignored annotation: /number=2 ignored annotation: exon 2812..2922 ignored annotation: /gene="MIA" ignored annotation: /number=3 ignored annotation: intron 2923..3239 ignored annotation: /gene="MIA" ignored annotation: /number=3 ignored annotation: exon 3240..3334 ignored annotation: /gene="MIA" ignored annotation: /number=4 ignored annotation: BASE COUNT 877 a 810 c 967 g 909 t 10 others 1 tctagacana taaaaataaa agaaatcatc caagaatggt gacttgccta ctattctact ** orig/raws/HSDNAMIA:67: invalid base letter "n" === HSE48ATGN === locus = HSE48ATGN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="8" ignored annotation: /map="q24-qter" ignored annotation: TATA_signal 1503..1507 ignored annotation: exon 1531..1606 ignored annotation: /number=1 ignored annotation: gene 1555..2849 ignored annotation: /gene="E48" CDS = 1555..1606,2384..2482,2614..2849 ignored annotation: /gene="E48" ignored annotation: /note="member of Ly-6 superfamily" ignored annotation: /codon_start=1 ignored annotation: /product="E48 antigen" ignored annotation: /db_xref="PID:e314115" ignored annotation: /db_xref="PID:g2739294" translation = MRTALLLLATLAVATGPALTLRCHVCTSSSNCKHSVVCPASSRFCKTTNTVEPLRGNLVKKDCAESCTPSYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALSLLAVILAPSL ignored annotation: intron 1607..2383 ignored annotation: /gene="E48" ignored annotation: /number=1 ignored annotation: exon 2384..2482 ignored annotation: /gene="E48" ignored annotation: /number=2 ignored annotation: intron 2483..2613 ignored annotation: /gene="E48" ignored annotation: /number=2 ignored annotation: exon 2614..3186 ignored annotation: /number=3 ignored annotation: BASE COUNT 633 a 1002 c 1023 g 525 t 3 others 1621 caaggggacg ggcgggtggg cggwtctggc ctgtgtggtc accaaatact aggagcctgg ** orig/raws/HSE48ATGN:78: invalid base letter "w" === HSEDMDGEN === locus = HSEDMDGEN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="X" ignored annotation: /cell_type="lymphoblasts" ignored annotation: /clone_lib="Xq28 specific cosmid lib in lawrist" ignored annotation: /map="q28" ignored annotation: exon 723..914 ignored annotation: /number=1 ignored annotation: gene 833..2545 ignored annotation: /gene="EDMD" CDS = 833..914,1038..1142,1290..1367,1582..1715,2101..2150,2230..2545 ignored annotation: /gene="EDMD" ignored annotation: /codon_start=1 ignored annotation: /product="emerin" ignored annotation: /db_xref="PID:e1154169" ignored annotation: /db_xref="PID:g2564243" translation = MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLFFIYHFMQAEEGNPF ignored annotation: intron 915..1037 ignored annotation: /gene="EDMD" ignored annotation: /number=1 ignored annotation: exon 1038..1142 ignored annotation: /gene="EDMD" ignored annotation: /number=2 ignored annotation: intron 1143..1289 ignored annotation: /gene="EDMD" ignored annotation: /number=2 ignored annotation: exon 1290..1367 ignored annotation: /gene="EDMD" ignored annotation: /number=3 ignored annotation: intron 1368..1581 ignored annotation: /gene="EDMD" ignored annotation: /number=3 ignored annotation: exon 1582..1715 ignored annotation: /gene="EDMD" ignored annotation: /number=4 ignored annotation: intron 1716..2100 ignored annotation: /gene="EDMD" ignored annotation: /number=4 ignored annotation: exon 2101..2150 ignored annotation: /gene="EDMD" ignored annotation: /number=5 ignored annotation: intron 2151..2229 ignored annotation: /gene="EDMD" ignored annotation: /number=5 ignored annotation: exon 2230..2869 ignored annotation: /number=6 ignored annotation: polyA_site 2848..2854 ignored annotation: BASE COUNT 564 a 1078 c 987 g 710 t // ** orig/raws/HSEDMDGEN:137: missing "mRNA" entry === HSENO2 === locus = HSENO2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="hematopoietic" ignored annotation: /cell_type="PBL" ignored annotation: /clone_lib="EMBL3" ignored annotation: /clone="lambda G3" ignored annotation: /chromosome="12" ignored annotation: /map="12p" ignored annotation: repeat_unit 205..508 ignored annotation: /note="ALU-like element" mRNA = 1100..1309,2450..2546,3044..3139,3297..3355,3662..3731,4202..4335,4561..4783,6188..6385,8198..8399,8673..8781,8961..9019,9348..10312 ignored annotation: /gene="ENO2" ignored annotation: /note="human gamma enolase" ignored annotation: gene 1100..10312 ignored annotation: /gene="ENO2" ignored annotation: exon 1100..1309 ignored annotation: /gene="ENO2" ignored annotation: /number=1 ignored annotation: intron 1310..2449 ignored annotation: /gene="ENO2" ignored annotation: /number=1 ignored annotation: exon 2450..2546 ignored annotation: /gene="ENO2" ignored annotation: /number=2 CDS = 2462..2546,3044..3139,3297..3355,3662..3731,4202..4335,4561..4783,6188..6385,8198..8399,8673..8781,8961..9019,9348..9417 ignored annotation: /gene="ENO2" ignored annotation: /codon_start=1 ignored annotation: /product="human gamma enolase" ignored annotation: /db_xref="PID:g31165" ignored annotation: /db_xref="SWISS-PROT:P09104" translation = MSIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPSVL ignored annotation: intron 2547..3043 ignored annotation: /gene="ENO2" ignored annotation: /number=2 ignored annotation: exon 3044..3139 ignored annotation: /gene="ENO2" ignored annotation: /number=3 ignored annotation: intron 3140..3296 ignored annotation: /gene="ENO2" ignored annotation: /number=3 ignored annotation: exon 3297..3355 ignored annotation: /gene="ENO2" ignored annotation: /number=4 ignored annotation: intron 3356..3661 ignored annotation: /gene="ENO2" ignored annotation: /number=4 ignored annotation: exon 3662..3731 ignored annotation: /gene="ENO2" ignored annotation: /number=5 ignored annotation: intron 3732..4201 ignored annotation: /gene="ENO2" ignored annotation: /number=5 ignored annotation: exon 4202..4335 ignored annotation: /gene="ENO2" ignored annotation: /number=6 ignored annotation: intron 4336..4560 ignored annotation: /gene="ENO2" ignored annotation: /number=6 ignored annotation: exon 4561..4783 ignored annotation: /gene="ENO2" ignored annotation: /number=7 ignored annotation: intron 4784..6187 ignored annotation: /gene="ENO2" ignored annotation: /number=7 ignored annotation: repeat_unit 4977..5260 ignored annotation: /gene="ENO2" ignored annotation: /note="ALU-like element" ignored annotation: repeat_unit 5323..5625 ignored annotation: /gene="ENO2" ignored annotation: /note="ALU-like element" ignored annotation: exon 6188..6385 ignored annotation: /gene="ENO2" ignored annotation: /number=8 ignored annotation: intron 6386..8197 ignored annotation: /gene="ENO2" ignored annotation: /number=8 ignored annotation: exon 8198..8399 ignored annotation: /gene="ENO2" ignored annotation: /number=9 ignored annotation: intron 8400..8672 ignored annotation: /gene="ENO2" ignored annotation: /number=9 ignored annotation: exon 8673..8781 ignored annotation: /gene="ENO2" ignored annotation: /number=10 ignored annotation: intron 8782..8960 ignored annotation: /gene="ENO2" ignored annotation: /number=10 ignored annotation: exon 8961..9019 ignored annotation: /gene="ENO2" ignored annotation: /number=11 ignored annotation: intron 9020..9347 ignored annotation: /gene="ENO2" ignored annotation: /number=11 ignored annotation: exon 9348..10312 ignored annotation: /gene="ENO2" ignored annotation: /number=12 ignored annotation: polyA_signal 10294..10299 ignored annotation: /gene="ENO2" ignored annotation: polyA_site 10312 ignored annotation: /gene="ENO2" ignored annotation: BASE COUNT 2285 a 2856 c 3103 g 2661 t mRNA range 1100..1309 mRNA range 2450..2546 mRNA range 3044..3139 mRNA range 3297..3355 mRNA range 3662..3731 mRNA range 4202..4335 mRNA range 4561..4783 mRNA range 6188..6385 mRNA range 8198..8399 mRNA range 8673..8781 mRNA range 8961..9019 mRNA range 9348..10312 CDS range 2462..2546 CDS range 3044..3139 CDS range 3297..3355 CDS range 3662..3731 CDS range 4202..4335 CDS range 4561..4783 CDS range 6188..6385 CDS range 8198..8399 CDS range 8673..8781 CDS range 8961..9019 CDS range 9348..9417 seq_ini = 1 seq_fin = 10905 i = 9417 last codon bas = tg[tga]ttc last codon lab = EF[DEF]YYY === HSEOTAX === locus = HSEOTAX ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="lung" ignored annotation: /cell_type="fibroblast" ignored annotation: TATA_signal 3116..3121 ignored annotation: exon 3159..3290 ignored annotation: /number=1 mRNA = 3159..3290,4502..4613,4992..5533 ignored annotation: gene 3215..5097 ignored annotation: /gene="eotaxin" CDS = 3215..3290,4502..4613,4992..5097 ignored annotation: /gene="eotaxin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e329504" ignored annotation: /db_xref="PID:g2462478" translation = MKVSAALLWLLLIAAAFSPQGLTGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCPQKAVIFKTKLAKDICADPKKRWVQDSMKYLDQKSPTPKP ignored annotation: intron 3291..4501 ignored annotation: /gene="eotaxin" ignored annotation: /number=1 ignored annotation: exon 4502..4613 ignored annotation: /gene="eotaxin" ignored annotation: /number=2 ignored annotation: intron 4614..4991 ignored annotation: /gene="eotaxin" ignored annotation: /number=2 ignored annotation: exon 4992..5533 ignored annotation: /number=3 ignored annotation: BASE COUNT 1507 a 1320 c 1140 g 1531 t 35 others 1 sncmgagtca gatacaggga armcssccmg ggggvgcybc ccggggggac acccsgggat ** orig/raws/HSEOTAX:56: invalid base letter "s" === HSERPG === locus = HSERPG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 397..627,1194..1339,1596..1682,2294..2473,2608..3327 ignored annotation: exon 397..627 ignored annotation: /number=1 ignored annotation: sig_peptide join(615..627,1194..1261) CDS = 615..627,1194..1339,1596..1682,2294..2473,2608..2763 ignored annotation: /codon_start=1 ignored annotation: /product="erythropoietin" ignored annotation: /db_xref="PID:g312304" ignored annotation: /db_xref="SWISS-PROT:P01588" translation = MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLQRYLLEAKEAENITTGCAEHCSLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQLHVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKLKLYTGEACRTGDR ignored annotation: intron 628..1193 ignored annotation: /number=1 ignored annotation: exon 1194..1339 ignored annotation: /number=2 ignored annotation: mat_peptide join(1262..1339,1596..1682,2294..2473,2608..2763) ignored annotation: /product="erythropoietin" ignored annotation: intron 1340..1595 ignored annotation: /number=2 ignored annotation: exon 1596..1682 ignored annotation: /number=3 ignored annotation: intron 1683..2293 ignored annotation: /number=3 ignored annotation: exon 2294..2473 ignored annotation: /number=4 ignored annotation: intron 2474..2607 ignored annotation: /number=4 ignored annotation: exon 2608..3327 ignored annotation: /note="3' untranslated region" ignored annotation: /number=5 ignored annotation: BASE COUNT 698 a 1034 c 991 g 675 t mRNA range 397..627 mRNA range 1194..1339 mRNA range 1596..1682 mRNA range 2294..2473 mRNA range 2608..3327 CDS range 615..627 CDS range 1194..1339 CDS range 1596..1682 CDS range 2294..2473 CDS range 2608..2763 seq_ini = 1 seq_fin = 3398 i = 2763 last codon bas = ga[tga]cca last codon lab = EF[DEF]YYY === HSFAU1 === locus = HSFAU1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="CML cosmid" ignored annotation: /clone="15.1" mRNA = 408..504,774..856,951..1095,1557..1612,1787..>1912 ignored annotation: /gene="fau 1" ignored annotation: exon 408..504 ignored annotation: /gene="fau 1" ignored annotation: /number=1 ignored annotation: gene 408..1912 ignored annotation: /gene="fau 1" ignored annotation: intron 505..773 ignored annotation: /gene="fau 1" ignored annotation: /number=1 ignored annotation: exon 774..856 ignored annotation: /gene="fau 1" ignored annotation: /number=2 CDS = 782..856,951..1095,1557..1612,1787..1912 ignored annotation: /gene="fau 1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g31305" ignored annotation: /db_xref="SWISS-PROT:P35544" ignored annotation: /db_xref="SWISS-PROT:Q05472" translation = MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS ignored annotation: intron 857..950 ignored annotation: /gene="fau 1" ignored annotation: /number=2 ignored annotation: exon 951..1095 ignored annotation: /gene="fau 1" ignored annotation: /number=3 ignored annotation: intron 1096..1556 ignored annotation: /gene="fau 1" ignored annotation: /number=3 ignored annotation: exon 1557..1612 ignored annotation: /gene="fau 1" ignored annotation: /number=4 ignored annotation: intron 1613..1786 ignored annotation: /gene="fau 1" ignored annotation: /number=4 ignored annotation: exon 1787..>1912 ignored annotation: /gene="fau 1" ignored annotation: /number=5 ignored annotation: polyA_signal 1938..1943 ignored annotation: BASE COUNT 421 a 562 c 538 g 495 t mRNA range 408..504 mRNA range 774..856 mRNA range 951..1095 mRNA range 1557..1612 mRNA range 1787..1912 CDS range 782..856 CDS range 951..1095 CDS range 1557..1612 CDS range 1787..1912 seq_ini = 1 seq_fin = 2016 i = 1912 last codon bas = ct[taa]gtc last codon lab = EF[DEF]NNN === HSFBRGG === locus = HSFBRGG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: repeat_region 1280..1309 ignored annotation: /note="direct repeat" ignored annotation: repeat_region 1310..1339 ignored annotation: /note="direct repeat" ignored annotation: CAAT_signal 1691..1694 ignored annotation: TATA_signal 1724..1728 ignored annotation: exon 1748..1876 ignored annotation: /number=1 ignored annotation: precursor_RNA 1748..9825 ignored annotation: /note="fibrinogen gamma chain variant gamma'primary ignored annotation: transcript" mRNA = 1748..1876,1973..2017,2207..2390,2510..2603,4211..4341,4645..4778,5758..5942,7426..7703,9342..9511,10054..10271 ignored annotation: /product="fibrinogen gamma chain" ignored annotation: precursor_RNA 1748..10271 ignored annotation: /note="fibrinogen gamma chain primary transcript" ignored annotation: sig_peptide 1799..1876 ignored annotation: /product="fibrinogen gamma chain" CDS = 1799..1876,1973..2017,2207..2390,2510..2603,4211..4341,4645..4778,5758..5942,7426..7703,9342..9511,10054..10068 ignored annotation: /codon_start=1 ignored annotation: /product="fibrinogen gamma chain" ignored annotation: /db_xref="PID:g577054" ignored annotation: /db_xref="SWISS-PROT:P02679" translation = MSWSLHPRNLILYFYALLFLSSTCVAYVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRIMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKIIPFNRLTIGEGQQHHLGGAKQAGDV ignored annotation: intron 1877..1972 ignored annotation: /number=1 ignored annotation: exon 1973..2017 ignored annotation: /number=2 ignored annotation: mat_peptide join(1973..2017,2207..2390,2510..2603,4211..4341, ignored annotation: 4645..4778,5758..5942,7426..7703,9342..9511,10054..10065) ignored annotation: /product="fibrinogen gamma chain" ignored annotation: intron 2018..2206 ignored annotation: /number=2 ignored annotation: exon 2207..2390 ignored annotation: /number=3 ignored annotation: intron 2391..2509 ignored annotation: /number=3 ignored annotation: exon 2510..2603 ignored annotation: /number=4 ignored annotation: intron 2604..4210 ignored annotation: /number=4 ignored annotation: exon 4211..4341 ignored annotation: /number=5 ignored annotation: intron 4342..4644 ignored annotation: /number=5 ignored annotation: exon 4645..4778 ignored annotation: /number=6 ignored annotation: intron 4779..5757 ignored annotation: /number=6 ignored annotation: exon 5758..5942 ignored annotation: /number=7 ignored annotation: intron 5943..7425 ignored annotation: /number=7 ignored annotation: exon 7426..7703 ignored annotation: /number=8 ignored annotation: intron 7704..9341 ignored annotation: /number=8 ignored annotation: misc_feature 8324..8468 ignored annotation: /note="region identical to exon 9 coding region (aa ignored annotation: 360-410)" ignored annotation: exon 9342..9511 ignored annotation: /number=9 ignored annotation: intron 9512..10053 ignored annotation: /number=9 ignored annotation: misc_feature 9808..9813 ignored annotation: /note="pot polyA site for gamma' chain" ignored annotation: polyA_site 9825 ignored annotation: /note="polyA site of gamma' chain" ignored annotation: exon 10054..10065 ignored annotation: /number=10 ignored annotation: misc_feature 10247..10252 ignored annotation: /note="pot polyA site" ignored annotation: polyA_site 10271 ignored annotation: /note="polyA site" ignored annotation: BASE COUNT 3337 a 1936 c 1991 g 3300 t mRNA range 1748..1876 mRNA range 1973..2017 mRNA range 2207..2390 mRNA range 2510..2603 mRNA range 4211..4341 mRNA range 4645..4778 mRNA range 5758..5942 mRNA range 7426..7703 mRNA range 9342..9511 mRNA range 10054..10271 CDS range 1799..1876 CDS range 1973..2017 CDS range 2207..2390 CDS range 2510..2603 CDS range 4211..4341 CDS range 4645..4778 CDS range 5758..5942 CDS range 7426..7703 CDS range 9342..9511 CDS range 10054..10068 seq_ini = 1 seq_fin = 10564 i = 10068 last codon bas = tt[taa]aag last codon lab = EF[DEF]YYY === HSFESFPS === locus = HSFESFPS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="15" ignored annotation: /map="q25-qter" ignored annotation: CAAT_signal 248..256 ignored annotation: /note="pot. CAAT-box" mRNA = <512..512,1005..1226,1379..1552,2926..3022,3152..3335,5267..5404,5478..5597,5801..5923,6053..6239,6361..6444,6940..7149,7511..7633,8015..8068,8663..8781,9056..9150,9247..9370,9610..9767,9892..10014,11372..11732 ignored annotation: exon <512..512 ignored annotation: /number=1 ignored annotation: intron 513..1004 ignored annotation: /number=1 ignored annotation: exon 1005..1226 ignored annotation: /number=2 CDS = 1014..1226,1379..1552,2926..3022,3152..3335,5267..5404,5478..5597,5801..5923,6053..6239,6361..6444,6940..7149,7511..7633,8015..8068,8663..8781,9056..9150,9247..9370,9610..9767,9892..10014,11372..11514 ignored annotation: /codon_start=1 ignored annotation: /product="NCP92" ignored annotation: /db_xref="PID:g31349" ignored annotation: /db_xref="SWISS-PROT:P07332" translation = MGFSSELCSPQGHGVLQQMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQDEVVAIHREMAAAAARIQPEAEYQGFLRQYGSAPDVPPCVTFDESLLEEGEPLEPGELQLNELTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGEPPPVLLLQDDRHSTSSSEQEREGGRTPTLEILKSHISGIFRPKFSLPPPLQLIPEVQKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRHR ignored annotation: intron 1227..1378 ignored annotation: /number=2 ignored annotation: exon 1379..1552 ignored annotation: /number=3 ignored annotation: intron 1553..2925 ignored annotation: /number=3 ignored annotation: exon 2926..3022 ignored annotation: /number=4 ignored annotation: intron 3023..3151 ignored annotation: /number=4 ignored annotation: exon 3152..3335 ignored annotation: /number=5 ignored annotation: intron 3336..5266 ignored annotation: /number=5 ignored annotation: exon 5267..5404 ignored annotation: /number=6 ignored annotation: intron 5405..5477 ignored annotation: /number=6 ignored annotation: exon 5478..5597 ignored annotation: /number=7 ignored annotation: intron 5598..5800 ignored annotation: /number=7 ignored annotation: exon 5801..5923 ignored annotation: /number=8 ignored annotation: intron 5924..6052 ignored annotation: /number=8 ignored annotation: exon 6053..6239 ignored annotation: /number=9 ignored annotation: intron 6240..6360 ignored annotation: /number=9 ignored annotation: exon 6361..6444 ignored annotation: /number=10 ignored annotation: intron 6445..6939 ignored annotation: /number=10 ignored annotation: exon 6940..7149 ignored annotation: /number=11 ignored annotation: intron 7150..7510 ignored annotation: /number=11 ignored annotation: exon 7511..7633 ignored annotation: /number=12 ignored annotation: intron 7634..8014 ignored annotation: /number=12 ignored annotation: exon 8015..8068 ignored annotation: /number=13 ignored annotation: intron 8069..8662 ignored annotation: /number=13 ignored annotation: exon 8663..8781 ignored annotation: /number=14 ignored annotation: intron 8782..9055 ignored annotation: /number=14 ignored annotation: exon 9056..9150 ignored annotation: /number=15 ignored annotation: misc_feature 9061 ignored annotation: /note="start of 0.95 kb fes/fps cDNA" ignored annotation: intron 9151..9246 ignored annotation: /number=15 ignored annotation: exon 9247..9370 ignored annotation: /number=16 ignored annotation: intron 9371..9609 ignored annotation: /number=16 ignored annotation: exon 9610..9767 ignored annotation: /number=17 ignored annotation: intron 9768..9891 ignored annotation: /number=17 ignored annotation: exon 9892..10014 ignored annotation: /number=18 ignored annotation: intron 10015..11371 ignored annotation: /number=18 ignored annotation: exon 11372..11732 ignored annotation: /number=19 ignored annotation: polyA_signal 11708..11713 ignored annotation: polyA_site 11730..11732 ignored annotation: /note="polyA sites" ignored annotation: BASE COUNT 2497 a 3568 c 3664 g 2534 t mRNA range 512..512 mRNA range 1005..1226 mRNA range 1379..1552 mRNA range 2926..3022 mRNA range 3152..3335 mRNA range 5267..5404 mRNA range 5478..5597 mRNA range 5801..5923 mRNA range 6053..6239 mRNA range 6361..6444 mRNA range 6940..7149 mRNA range 7511..7633 mRNA range 8015..8068 mRNA range 8663..8781 mRNA range 9056..9150 mRNA range 9247..9370 mRNA range 9610..9767 mRNA range 9892..10014 mRNA range 11372..11732 CDS range 1014..1226 CDS range 1379..1552 CDS range 2926..3022 CDS range 3152..3335 CDS range 5267..5404 CDS range 5478..5597 CDS range 5801..5923 CDS range 6053..6239 CDS range 6361..6444 CDS range 6940..7149 CDS range 7511..7633 CDS range 8015..8068 CDS range 8663..8781 CDS range 9056..9150 CDS range 9247..9370 CDS range 9610..9767 CDS range 9892..10014 CDS range 11372..11514 seq_ini = 1 seq_fin = 12263 i = 11514 last codon bas = gg[tga]ggc last codon lab = EF[DEF]YYY === HSFGFR4G === locus = HSFGFR4G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="5" ignored annotation: /clone_lib="Pieter de Jong's PAC" ignored annotation: /clone="32C5" ignored annotation: /map="q35" ignored annotation: exon 1152..1255 ignored annotation: /gene="FGFR-4" ignored annotation: /number=1 ignored annotation: gene 1152..12477 ignored annotation: /gene="FGFR-4" mRNA = 1152..1255,3778..3921,4621..4884,4975..5055,5167..5333,5914..6037,6550..6740,6875..7013,7367..7560,7635..7780,7883..8004,9558..9668,9761..9951,10285..10407,10515..10585,10832..10969,11643..11748,11878..12477 ignored annotation: /gene="FGFR-4" ignored annotation: intron 1256..3777 ignored annotation: /gene="FGFR-4" ignored annotation: /number=1 ignored annotation: exon 3778..3921 ignored annotation: /gene="FGFR-4" ignored annotation: /number=2 CDS = 3831..3921,4621..4884,4975..5055,5167..5333,5914..6037,6550..6740,6875..7013,7367..7560,7635..7780,7883..8004,9558..9668,9761..9951,10285..10407,10515..10585,10832..10969,11643..11748,11878..12027 ignored annotation: /gene="FGFR-4" ignored annotation: /codon_start=1 ignored annotation: /product="fibroblast growth factor 4" ignored annotation: /db_xref="PID:e1249321" ignored annotation: /db_xref="PID:g2832350" translation = MRLLLALLGILLSVPGPPVLSLEASEEVELEPCLAPSLEQQEQELTVALGQPVRLCCGRAERGGHWYKEGSRLAPAGRVRGWRGRLEIASFLPEDAGRYLCLARGSMIVLQNLTLITGDSLTSSNDDEDPKSHRDLSNRHSYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAAGNPTPTIRWLKDGQAFHGENRIGGIRLRHQHWSLVMESVVPSDRGTYTCLVENAVGSIRYNYLLDVLERSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQPHIQWLKHIVINGSSFGADGFPYVQVLKTADINSSEVEVLYLRNVSAEDAGEYTCLAGNSIGLSYQSAWLTVLPEEDPTWTAAAPEARYTDIILYASGSLALAVLLLLAGLYRGQALHGRHPRPPATVQKLSRFPLARQFSLESGSSGKSSSSLVRGVRLSSSGPALLAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDPARPDQASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAVSEEYLDLRLTFGPYSPSGGDASSTCSSSDSVFSHDPLPLGSSSFPFGSGVQT ignored annotation: intron 3922..4620 ignored annotation: /gene="FGFR-4" ignored annotation: /number=2 ignored annotation: exon 4621..4884 ignored annotation: /gene="FGFR-4" ignored annotation: /number=3 ignored annotation: intron 4885..4974 ignored annotation: /gene="FGFR-4" ignored annotation: /number=3 ignored annotation: exon 4975..5055 ignored annotation: /gene="FGFR-4" ignored annotation: /number=4 ignored annotation: intron 5056..5166 ignored annotation: /gene="FGFR-4" ignored annotation: /number=4 ignored annotation: exon 5167..5333 ignored annotation: /gene="FGFR-4" ignored annotation: /number=5 ignored annotation: intron 5334..5913 ignored annotation: /gene="FGFR-4" ignored annotation: /number=5 ignored annotation: exon 5914..6037 ignored annotation: /gene="FGFR-4" ignored annotation: /number=6 ignored annotation: intron 6038..6549 ignored annotation: /gene="FGFR-4" ignored annotation: /number=6 ignored annotation: exon 6550..6740 ignored annotation: /gene="FGFR-4" ignored annotation: /number=7 ignored annotation: intron 6741..6874 ignored annotation: /gene="FGFR-4" ignored annotation: /number=7 ignored annotation: exon 6875..7013 ignored annotation: /gene="FGFR-4" ignored annotation: /number=8 ignored annotation: intron 7014..7366 ignored annotation: /gene="FGFR-4" ignored annotation: /number=8 ignored annotation: exon 7367..7560 ignored annotation: /gene="FGFR-4" ignored annotation: /number=9 ignored annotation: intron 7561..7634 ignored annotation: /gene="FGFR-4" ignored annotation: /number=9 ignored annotation: exon 7635..7780 ignored annotation: /gene="FGFR-4" ignored annotation: /number=10 ignored annotation: intron 7781..7882 ignored annotation: /gene="FGFR-4" ignored annotation: /number=10 ignored annotation: exon 7883..8004 ignored annotation: /gene="FGFR-4" ignored annotation: /number=11 ignored annotation: intron 8005..9557 ignored annotation: /gene="FGFR-4" ignored annotation: /number=11 ignored annotation: exon 9558..9668 ignored annotation: /gene="FGFR-4" ignored annotation: /number=12 ignored annotation: intron 9669..9760 ignored annotation: /gene="FGFR-4" ignored annotation: /number=12 ignored annotation: exon 9761..9951 ignored annotation: /gene="FGFR-4" ignored annotation: /number=13 ignored annotation: intron 9952..10284 ignored annotation: /gene="FGFR-4" ignored annotation: /number=13 ignored annotation: exon 10285..10407 ignored annotation: /gene="FGFR-4" ignored annotation: /number=14 ignored annotation: intron 10408..10514 ignored annotation: /gene="FGFR-4" ignored annotation: /number=14 ignored annotation: exon 10515..10585 ignored annotation: /gene="FGFR-4" ignored annotation: /number=15 ignored annotation: intron 10586..10831 ignored annotation: /gene="FGFR-4" ignored annotation: /number=15 ignored annotation: exon 10832..10969 ignored annotation: /gene="FGFR-4" ignored annotation: /number=16 ignored annotation: intron 10970..11642 ignored annotation: /gene="FGFR-4" ignored annotation: /number=16 ignored annotation: exon 11643..11748 ignored annotation: /gene="FGFR-4" ignored annotation: /number=17 ignored annotation: intron 11749..11877 ignored annotation: /gene="FGFR-4" ignored annotation: /number=17 ignored annotation: exon 11878..12477 ignored annotation: /gene="FGFR-4" ignored annotation: /number=18 ignored annotation: BASE COUNT 2417 a 3946 c 3917 g 2815 t mRNA range 1152..1255 mRNA range 3778..3921 mRNA range 4621..4884 mRNA range 4975..5055 mRNA range 5167..5333 mRNA range 5914..6037 mRNA range 6550..6740 mRNA range 6875..7013 mRNA range 7367..7560 mRNA range 7635..7780 mRNA range 7883..8004 mRNA range 9558..9668 mRNA range 9761..9951 mRNA range 10285..10407 mRNA range 10515..10585 mRNA range 10832..10969 mRNA range 11643..11748 mRNA range 11878..12477 CDS range 3831..3921 CDS range 4621..4884 CDS range 4975..5055 CDS range 5167..5333 CDS range 5914..6037 CDS range 6550..6740 CDS range 6875..7013 CDS range 7367..7560 CDS range 7635..7780 CDS range 7883..8004 CDS range 9558..9668 CDS range 9761..9951 CDS range 10285..10407 CDS range 10515..10585 CDS range 10832..10969 CDS range 11643..11748 CDS range 11878..12027 seq_ini = 1 seq_fin = 13095 i = 12027 last codon bas = ca[tga]gca last codon lab = EF[DEF]YYY === HSFOLA === locus = HSFOLA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="human lymphocyte EMBL3" ignored annotation: GC_signal 89..99 ignored annotation: GC_signal 94..104 ignored annotation: TATA_signal 197..204 ignored annotation: CAAT_signal 296..304 ignored annotation: TATA_signal 385..392 ignored annotation: misc_feature 495..499 ignored annotation: /note="Ets motif (Pu box)" ignored annotation: misc_feature 553..558 ignored annotation: /note="Ets motif (Pu box)" ignored annotation: misc_feature 559..565 ignored annotation: /note="Ets motif (Pu box)" ignored annotation: exon 611..737 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=1 mRNA = 611..737,2383..2556,4687..4875,4993..5128,5287..5758 ignored annotation: /gene="placental folate receptor" ignored annotation: gene 611..5758 ignored annotation: /gene="placental folate receptor" ignored annotation: intron 738..2382 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=1 ignored annotation: GC_signal 802..902 ignored annotation: /gene="placental folate receptor" ignored annotation: exon 2383..2556 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=2 CDS = 2407..2556,4687..4875,4993..5128,5287..5579 ignored annotation: /gene="placental folate receptor" ignored annotation: /codon_start=1 ignored annotation: /product="folate receptor" ignored annotation: /db_xref="PID:e279925" ignored annotation: /db_xref="PID:g1655592" translation = MVWKWMPLLLLLVCVATMCSAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLLLSLALMLQLWLLG ignored annotation: intron 2557..4686 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=2 ignored annotation: exon 4687..4875 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=3 ignored annotation: intron 4876..4992 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=3 ignored annotation: exon 4993..5128 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=4 ignored annotation: intron 5129..5286 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=4 ignored annotation: exon 5287..5758 ignored annotation: /gene="placental folate receptor" ignored annotation: /number=5 ignored annotation: BASE COUNT 1507 a 1429 c 1515 g 1594 t mRNA range 611..737 mRNA range 2383..2556 mRNA range 4687..4875 mRNA range 4993..5128 mRNA range 5287..5758 CDS range 2407..2556 CDS range 4687..4875 CDS range 4993..5128 CDS range 5287..5579 seq_ini = 1 seq_fin = 6045 i = 5579 last codon bas = gc[tga]gtt last codon lab = EF[DEF]YYY === HSG17G === locus = HSG17G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="lymphoblastoid cell line-ICE5" ignored annotation: /clone_lib="cosmid" ignored annotation: /clone="COS E91" ignored annotation: /chromosome="6" ignored annotation: /map="6p21.3" ignored annotation: exon 1..506 ignored annotation: /gene="G17" ignored annotation: /number=1 mRNA = <1..506,1405..1478,1697..1944,2045..2235,2419..2554,2806..2959,3300..3388,3511..3597,3727..>5443 ignored annotation: /gene="G17" ignored annotation: /product="PBX2" ignored annotation: gene 1..5443 ignored annotation: /gene="G17" CDS = 286..506,1405..1478,1697..1944,2045..2235,2419..2554,2806..2959,3300..3388,3511..3597,3727..3819 ignored annotation: /gene="G17" ignored annotation: /codon_start=1 ignored annotation: /product="PBX2" ignored annotation: /db_xref="PID:g634053" ignored annotation: /db_xref="SWISS-PROT:P40425" translation = MDERLLGPPPPGGGRGGLGLVSGEPGGPGEPPGGGDPGGGSGGVPGGRGKQDIGDILQQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRSSQEEEPVDPQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGGVSPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMERMVSIIHRKFSAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQGGHSRTSSPTPPSSAGSGGSFNLSGSGDMFLGMPGLNGDSYSASQVESLRHSMGPGGYGDNLGGGQMYSPREMRANGSWQEAVTPSSVTSPTEGPGSVHSDTSN ignored annotation: intron 507..1404 ignored annotation: /gene="G17" ignored annotation: /number=1 ignored annotation: exon 1405..1478 ignored annotation: /gene="G17" ignored annotation: /number=2 ignored annotation: intron 1479..1696 ignored annotation: /gene="G17" ignored annotation: /number=2 ignored annotation: exon 1697..1944 ignored annotation: /gene="G17" ignored annotation: /number=3 ignored annotation: intron 1945..2044 ignored annotation: /gene="G17" ignored annotation: /number=3 ignored annotation: exon 2045..2235 ignored annotation: /gene="G17" ignored annotation: /number=4 ignored annotation: misc_feature 2228..2235 ignored annotation: /gene="G17" ignored annotation: /note="homeobox in exon 4" ignored annotation: intron 2236..2418 ignored annotation: /gene="G17" ignored annotation: /number=4 ignored annotation: exon 2419..2554 ignored annotation: /gene="G17" ignored annotation: /number=5 ignored annotation: misc_feature 2419..2554 ignored annotation: /gene="G17" ignored annotation: /note="homeobox in exon 5" ignored annotation: intron 2555..2805 ignored annotation: /gene="G17" ignored annotation: /number=5 ignored annotation: misc_feature 2806..2853 ignored annotation: /gene="G17" ignored annotation: /note="homeobox in exon 6" ignored annotation: exon 2806..2959 ignored annotation: /gene="G17" ignored annotation: /number=6 ignored annotation: intron 2960..3299 ignored annotation: /gene="G17" ignored annotation: /number=6 ignored annotation: exon 3300..3388 ignored annotation: /gene="G17" ignored annotation: /number=7 ignored annotation: intron 3389..3510 ignored annotation: /gene="G17" ignored annotation: /number=7 ignored annotation: exon 3511..3597 ignored annotation: /gene="G17" ignored annotation: /number=8 ignored annotation: conflict 3576 ignored annotation: /gene="G17" ignored annotation: /citation=[3] ignored annotation: /replace="c" ignored annotation: intron 3598..3726 ignored annotation: /gene="G17" ignored annotation: /number=8 ignored annotation: exon 3727..5443 ignored annotation: /gene="G17" ignored annotation: /number=9 ignored annotation: conflict 4544 ignored annotation: /gene="G17" ignored annotation: /citation=[3] ignored annotation: /replace="t" ignored annotation: conflict 4657..4661 ignored annotation: /gene="G17" ignored annotation: /citation=[3] ignored annotation: /replace="gt" ignored annotation: conflict 4785..4787 ignored annotation: /gene="G17" ignored annotation: /citation=[3] ignored annotation: /replace="aggt" ignored annotation: conflict 5196..5198 ignored annotation: /gene="G17" ignored annotation: /citation=[3] ignored annotation: /replace="ga" ignored annotation: conflict 5378..5380 ignored annotation: /gene="G17" ignored annotation: /citation=[3] ignored annotation: /replace="ggcta" ignored annotation: BASE COUNT 1163 a 1610 c 1388 g 1282 t mRNA range 1..506 mRNA range 1405..1478 mRNA range 1697..1944 mRNA range 2045..2235 mRNA range 2419..2554 mRNA range 2806..2959 mRNA range 3300..3388 mRNA range 3511..3597 mRNA range 3727..5443 CDS range 286..506 CDS range 1405..1478 CDS range 1697..1944 CDS range 2045..2235 CDS range 2419..2554 CDS range 2806..2959 CDS range 3300..3388 CDS range 3511..3597 CDS range 3727..3819 seq_ini = 1 seq_fin = 5443 i = 3819 last codon bas = ac[tga]tct last codon lab = EF[DEF]YYY === HSGCAP2 === locus = HSGCAP2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /clone_lib="lambda FIX II, Stratagene, Cat. No. 9462039" ignored annotation: /sex="Male" ignored annotation: TATA_signal 950..954 ignored annotation: exon 979..1110 ignored annotation: /number=1 ignored annotation: 5'UTR 979..1020 ignored annotation: /evidence=experimental ignored annotation: gene 1021..3167 ignored annotation: /gene="GCAP-II" CDS = 1021..1110,2251..2437,3106..3167 ignored annotation: /gene="GCAP-II" ignored annotation: /codon_start=1 ignored annotation: /product="uroguanylin" ignored annotation: /db_xref="PID:e233860" ignored annotation: /db_xref="PID:g1495451" translation = MGCRAASGLLPGVAVVLLLLLQSTQSVYIQYQGFRVQLESMKKLSDLEAQWAPSPRLQAQSLLPAVCHHPALPQDLQPVCASQEASSIFKTLRTIANDDCELCVNVACTGCL ignored annotation: intron 1111..2250 ignored annotation: /gene="GCAP-II" ignored annotation: /number=1 ignored annotation: exon 2251..2437 ignored annotation: /gene="GCAP-II" ignored annotation: /number=2 ignored annotation: intron 2438..3105 ignored annotation: /gene="GCAP-II" ignored annotation: /number=2 ignored annotation: exon 3106..3390 ignored annotation: /number=3 ignored annotation: 3'UTR 3168..3390 ignored annotation: polyA_signal 3374..3379 ignored annotation: BASE COUNT 804 a 1030 c 1056 g 710 t // ** orig/raws/HSGCAP2:119: missing "mRNA" entry === HSGCSFG === locus = HSGCSFG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 296..301 ignored annotation: exon 329..403 ignored annotation: /number=1 mRNA = 329..403,580..743,1122..1229,1374..1520,1685..2702 ignored annotation: prim_transcript 329..2702 CDS = 364..403,580..743,1122..1229,1374..1520,1685..1849 ignored annotation: /codon_start=1 ignored annotation: /product="G-CSF protein" ignored annotation: /db_xref="PID:g296647" ignored annotation: /db_xref="SWISS-PROT:P09919" translation = MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRHLAQP ignored annotation: sig_peptide join(364..403,580..629) ignored annotation: intron 404..579 ignored annotation: /number=1 ignored annotation: exon 580..743 ignored annotation: /number=2 ignored annotation: mat_peptide join(630..743,1122..1229,1374..1520,1685..1846) ignored annotation: /product="mature G-CSF protein" ignored annotation: intron 744..1121 ignored annotation: /number=2 ignored annotation: exon 1122..1229 ignored annotation: /number=3 ignored annotation: intron 1230..1373 ignored annotation: /number=3 ignored annotation: exon 1374..1520 ignored annotation: /number=4 ignored annotation: intron 1521..1684 ignored annotation: /number=4 ignored annotation: exon 1685..2702 ignored annotation: /number=5 ignored annotation: polyA_signal 2685..2690 ignored annotation: polyA_site 2702 ignored annotation: BASE COUNT 599 a 839 c 917 g 605 t mRNA range 329..403 mRNA range 580..743 mRNA range 1122..1229 mRNA range 1374..1520 mRNA range 1685..2702 CDS range 364..403 CDS range 580..743 CDS range 1122..1229 CDS range 1374..1520 CDS range 1685..1849 seq_ini = 1 seq_fin = 2960 i = 1849 last codon bas = cc[tga]gcc last codon lab = EF[DEF]YYY === HSGEBCMA === locus = HSGEBCMA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="germ line" ignored annotation: /tissue_type="placenta" ignored annotation: /chromosome="16" ignored annotation: /map="p13.1" ignored annotation: /germline ignored annotation: TATA_signal 190..196 ignored annotation: exon 259..606 ignored annotation: /label=exon1 CDS = 477..606,1349..1495,2715..2992 ignored annotation: /codon_start=1 ignored annotation: /product="BCMA peptide" ignored annotation: /db_xref="PID:g471245" ignored annotation: /db_xref="SWISS-PROT:Q02223" translation = MLQMAGQCSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVTNSVKGTNAILWTCLGLSLIISLAVFVLMFLLRKISSEPLKDEFKNTGSGLLGMANIDLEKSRTGDEIILPRGLEYTVEECTCEDCIKSKPKVDSDHCFPLPAMEEGATILVTTKTNDYCKSLPAALSATEIEKSISAR ignored annotation: intron 607..1348 ignored annotation: /cons_splice=(5'site:YES,3'site:YES) ignored annotation: exon 1349..1495 ignored annotation: /label=exon2 ignored annotation: /product="BCMA peptide" ignored annotation: intron 1496..2714 ignored annotation: /cons_splice=(5'site:YES,3'site:YES) ignored annotation: exon 2715..3214 ignored annotation: /label=exon3 ignored annotation: /product="BCMA peptide" ignored annotation: polyA_site 3124 ignored annotation: /evidence=experimental ignored annotation: polyA_signal 3192..3197 ignored annotation: polyA_site 3193 ignored annotation: /evidence=experimental ignored annotation: BASE COUNT 1042 a 765 c 822 g 1159 t 14 others 1021 gggaggccga gatgggtgaa tcacctgagg tcggcagttt gagnncagcc tggccaacct ** orig/raws/HSGEBCMA:78: invalid base letter "n" === HSGGL2 === locus = HSGGL2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_RNA 57 ignored annotation: /note="capped by 7mGppp" ignored annotation: exon 57..201 ignored annotation: /number=1 ignored annotation: prim_transcript 57..1628 CDS = 110..201,324..546,1413..1541 ignored annotation: /codon_start=1 ignored annotation: /product="gamma globin" ignored annotation: /db_xref="PID:g31729" ignored annotation: /db_xref="SWISS-PROT:P02096" translation = MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQASWQKMVTAVASALSSRYH ignored annotation: intron 202..323 ignored annotation: /number=1 ignored annotation: exon 324..546 ignored annotation: /number=2 ignored annotation: intron 547..1412 ignored annotation: /number=2 ignored annotation: exon 1413..1628 ignored annotation: /number=3 ignored annotation: polyA_site 1628 ignored annotation: BASE COUNT 429 a 332 c 438 g 429 t // ** orig/raws/HSGGL2:74: missing "mRNA" entry === HSGLA === locus = HSGLA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /cell_type="lymphoblast" ignored annotation: /chromosome="X" ignored annotation: /map="q21.33" ignored annotation: repeat_unit 848..857 ignored annotation: /note="direct repeat 1" ignored annotation: /rpt_type=DIRECT ignored annotation: repeat_unit 864..873 ignored annotation: /note="direct repeat 1" ignored annotation: /rpt_type=DIRECT ignored annotation: repeat_unit 881..890 ignored annotation: /note="direct repeat 1" ignored annotation: /rpt_type=DIRECT ignored annotation: repeat_unit 897..906 ignored annotation: /note="direct repeat 1" ignored annotation: /rpt_type=DIRECT ignored annotation: TATA_signal 1089..1094 ignored annotation: prim_transcript 1120..11266 ignored annotation: exon 1120..1373 ignored annotation: /number=1 mRNA = 1120..1373,5094..5268,7269..7446,8321..8412,10131..10292,10510..10707,10978..11266 CDS = 1180..1373,5094..5268,7269..7446,8321..8412,10131..10292,10510..10707,10978..11268 ignored annotation: /EC_number="3.2.1.22" ignored annotation: /codon_start=1 ignored annotation: /product="alpha-D-galactosidase A" ignored annotation: /db_xref="PID:g31756" ignored annotation: /db_xref="SWISS-PROT:P06280" translation = MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENTMQMSLKDLL ignored annotation: sig_peptide 1180..1272 ignored annotation: mat_peptide join(1273..1373,5094..5268,7269..7446,8321..8412, ignored annotation: 10131..10292,10510..10707,10978..11265) ignored annotation: /EC_number="3.2.1.22" ignored annotation: /product="alpha-D-galactosidase A" ignored annotation: intron 1374..5093 ignored annotation: /number=1 ignored annotation: repeat_region 2851..3150 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 3155..3443 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 3828..4125 ignored annotation: /note="Alu repetitive sequence" ignored annotation: misc_feature 4211..4512 ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 5094..5268 ignored annotation: /number=2 ignored annotation: intron 5269..7268 ignored annotation: /number=2 ignored annotation: repeat_region 5351..5644 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 5759..6060 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 6306..6595 ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 7269..7446 ignored annotation: /number=3 ignored annotation: misc_feature 7317..7322 ignored annotation: /note="pot. N-linked glycosoylation site" ignored annotation: intron 7447..8320 ignored annotation: /number=3 ignored annotation: misc_feature 7945..8229 ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 8321..8412 ignored annotation: /number=4 ignored annotation: misc_feature 8350..8355 ignored annotation: /note="pot. N-linked glycosylation site" ignored annotation: intron 8413..10130 ignored annotation: /number=4 ignored annotation: repeat_region 9508..9793 ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 10131..10292 ignored annotation: /number=5 ignored annotation: misc_feature 10137..10142 ignored annotation: /note="pot. N-linked glycosylation site" ignored annotation: intron 10293..10509 ignored annotation: /number=5 ignored annotation: exon 10510..10707 ignored annotation: /number=6 ignored annotation: intron 10708..10977 ignored annotation: /number=6 ignored annotation: exon 10978..11266 ignored annotation: /number=7 ignored annotation: misc_feature 11203..11208 ignored annotation: /note="pot. N-linked glycosylation site" ignored annotation: misc_feature 11211..11215 ignored annotation: /note="snRNP binding site" ignored annotation: polyA_signal 11250..11255 ignored annotation: polyA_site 11266 ignored annotation: /note="polyA site" ignored annotation: misc_feature 11330..11620 ignored annotation: /note="pot. N-linked glycosylation site" ignored annotation: misc_feature 12101..12398 ignored annotation: /note="pot. N-linked glycosylation site" ignored annotation: BASE COUNT 3308 a 2864 c 2649 g 3615 t mRNA range 1120..1373 mRNA range 5094..5268 mRNA range 7269..7446 mRNA range 8321..8412 mRNA range 10131..10292 mRNA range 10510..10707 mRNA range 10978..11266 CDS range 1180..1373 CDS range 5094..5268 CDS range 7269..7446 CDS range 8321..8412 CDS range 10131..10292 CDS range 10510..10707 CDS range 10978..11268 seq_ini = 1 seq_fin = 12436 i = 11268 last codon bas = tt[taa]aat last codon lab = EF[DEF]NNN === HSGLTH1 === locus = HSGLTH1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="cosmid Calpha3'Bg" ignored annotation: promoter 23..27 ignored annotation: /note="CAAT-Box" ignored annotation: promoter 57..61 ignored annotation: /note="TATA-Box" ignored annotation: precursor_RNA 128..972 ignored annotation: /note="put. transcript (K562 cells); maj." mRNA = 128..375 ignored annotation: /note="put. Exon 1" ignored annotation: misc_feature 177..182 ignored annotation: /note="GGGCGG-Box" ignored annotation: misc_feature 190 ignored annotation: /note="alternate pot. transcription initiation site; min." ignored annotation: misc_feature 242 ignored annotation: /note="alt. pot. transcription initiation site; min." CDS = 281..375,460..664,774..902 ignored annotation: /codon_start=1 ignored annotation: /product="theta 1-globin" ignored annotation: /db_xref="PID:g31776" ignored annotation: /db_xref="SWISS-PROT:P09105" translation = MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSPALQASLDKFLSHVISALVSEYR ignored annotation: intron 376..459 ignored annotation: /note="Intron I" mRNA 460..664 ** orig/raws/HSGLTH1:46: more than one "mRNA" entry === HSGLUCG2 === locus = HSGLUCG2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="fetal liver genomic DNA" ignored annotation: /clone="lambdahGCG1" ignored annotation: promoter complement(535..538) ignored annotation: /note="CAAT-box (complementary strand)" ignored annotation: promoter 577..581 ignored annotation: /note="TATA-box" ignored annotation: exon 603..698 ignored annotation: /note="exon 1; untranslated leader (5' UT-region)" ignored annotation: intron 699..3665 ignored annotation: /note="intron I" ignored annotation: exon 3666..3766 ignored annotation: /note="exon 2" CDS = 3675..3766,5339..5500,7177..7314,8683..8826,9481..9487 ignored annotation: /note="prepro-glucagon" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g762941" ignored annotation: /db_xref="SWISS-PROT:P01275" translation = MKSIYFVAGLFVMLVQGSWQRSLQDTEEKSRSFSASQADPLSDPDQMNEDKRHSQGTFTSDYSKYLDSRRAQDFVQWLMNTNRNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAAKEFIAWLVKGRGRRDFPEEVAIVEELGRRHADGSFSDEMNTILDNLAARDFINWLIQTKITDRK ignored annotation: sig_peptide 3675..3734 ignored annotation: /note="signal peptide (AA -20 to -1)" ignored annotation: intron 3767..5338 ignored annotation: /note="intron II" ignored annotation: misc_feature 5339..5396 ignored annotation: /note="glicentin related pancreatic peptide (AA 12-30) ignored annotation: (5339 is 3rd base in codon)" ignored annotation: exon 5339..5500 ignored annotation: /note="exon 3" ignored annotation: misc_feature 5397..5402 ignored annotation: /note="spacer (AA 31-32; 2AA)" ignored annotation: misc_feature 5403..5489 ignored annotation: /note="glucagon (AA 33-61; 29AA)" ignored annotation: misc_feature 5490..5500 ignored annotation: /note="spacer (AA 61-65; 4AA) (5500 is 2nd base in codon)" ignored annotation: intron 5501..7176 ignored annotation: /note="intron III" ignored annotation: exon 7177..7314 ignored annotation: /note="exon 4" ignored annotation: misc_feature 7177..7195 ignored annotation: /note="spacer (AA 66-71; 6AA) (7177 is 3rd base in codon)" ignored annotation: misc_feature 7196..7306 ignored annotation: /note="glucagon-like peptide 1 (AA 72-108; 37AA)" ignored annotation: misc_feature 7307..7314 ignored annotation: /note="spacer (AA 109-111; 3AA) (7314 is 2nd base in ignored annotation: codon)" ignored annotation: intron 7315..8682 ignored annotation: /note="intron IV" ignored annotation: misc_feature 8683..8725 ignored annotation: /note="spacer (AA 112-125; 14AA) (8683 is 3rd base in ignored annotation: codon)" ignored annotation: exon 8683..8826 ignored annotation: /note="exon 5" ignored annotation: misc_feature 8683..8826 ignored annotation: /note="pro-glucagon (AA 112-159) (8683 is 3rd base in ignored annotation: codon) (8826 is 2nd base in codon)" ignored annotation: misc_feature 8726..8826 ignored annotation: /note="glucagon-like peptide 2 (AA 126-159) (8826 is 2nd ignored annotation: base in codon)" ignored annotation: intron 8827..9480 ignored annotation: /note="intron V" ignored annotation: misc_feature 9481..9484 ignored annotation: /note="glucagon-like peptide 2 (AA 159-160; 35AA total) ignored annotation: (9481 is 3rd base in codon)" ignored annotation: misc_feature 9481..9484 ignored annotation: /note="pro-glucagon (AA 159-160) (9481 is 3rd base in ignored annotation: codon)" ignored annotation: exon 9481..>9487 ignored annotation: /note="exon 6" ignored annotation: misc_feature 9950..9956 ignored annotation: /note="pot. polyA signal" ignored annotation: misc_feature 9965..9974 ignored annotation: /note="region of pot. polyA sites" ignored annotation: BASE COUNT 3397 a 1698 c 1746 g 3209 t // ** orig/raws/HSGLUCG2:270: missing "mRNA" entry === HSGMCSFG === locus = HSGMCSFG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: promoter 597..603 ignored annotation: /note="put. TATA box" ignored annotation: misc_feature 620..622 ignored annotation: /note="transcription initiation region" CDS = 662..820,914..955,1643..1768,2578..2685 ignored annotation: /note="put. GM-CSF precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g31859" ignored annotation: /db_xref="SWISS-PROT:P04141" translation = MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITFESFKENLKDFLLVIPFDCWEPVQE ignored annotation: intron 821..913 ignored annotation: /note="intron I" ignored annotation: intron 956..1642 ignored annotation: /note="intron II" ignored annotation: intron 1769..2577 ignored annotation: /note="intron III" ignored annotation: misc_feature 2998 ignored annotation: /note="polyadenylation site" ignored annotation: BASE COUNT 668 a 824 c 878 g 673 t // ** orig/raws/HSGMCSFG:96: missing "mRNA" entry === HSGROW2 === locus = HSGROW2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript (274.275)..1905 mRNA = (274.275)..344,601..761,971..1090,1184..1348,1602..1905 ignored annotation: exon (274.275)..344 ignored annotation: /number=1 CDS = 335..344,601..761,971..1090,1184..1348,1602..1799 ignored annotation: /codon_start=1 ignored annotation: /product="growth hormone" ignored annotation: /db_xref="PID:g312406" translation = MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNASLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF ignored annotation: intron 345..600 ignored annotation: /number=1 ignored annotation: exon 601..761 ignored annotation: /number=2 ignored annotation: intron 762..970 ignored annotation: /number=2 ignored annotation: exon 971..1090 ignored annotation: /number=3 ignored annotation: intron 1091..1183 ignored annotation: /number=3 ignored annotation: exon 1184..1348 ignored annotation: /number=4 ignored annotation: intron 1349..1601 ignored annotation: /number=4 ignored annotation: exon 1602..1905 ignored annotation: /number=5 ignored annotation: BASE COUNT 451 a 550 c 550 g 413 t // ** orig/raws/HSGROW2:86: bad range format "(274.275)..344" === HSGTRH === locus = HSGTRH ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="fetus" ignored annotation: /clone_lib="Maniatis lambda Charon" ignored annotation: /chromosome="8" ignored annotation: /map="p11-p21.4A" ignored annotation: TATA_signal 1009..1114 mRNA = 1039..1192,2063..2204,3720..3815,5960..6160 ignored annotation: exon 1039..1192 ignored annotation: /number=1 ignored annotation: intron 1193..2062 ignored annotation: /number=1 ignored annotation: exon 2063..2204 ignored annotation: /number=2 CDS = 2064..2204,3720..3815,5960..6001 ignored annotation: /codon_start=1 ignored annotation: /product="gonadotropin-releasing hormone" ignored annotation: /db_xref="PID:g31956" ignored annotation: /db_xref="SWISS-PROT:P01148" translation = MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLAETQRFECTTHQPRSPLRDLKGALESLIEEETGQKKI ignored annotation: intron 2206..3719 ignored annotation: /number=2 ignored annotation: exon 3720..3815 ignored annotation: /number=3 ignored annotation: intron 3816..5959 ignored annotation: /number=3 ignored annotation: exon 5960..6160 ignored annotation: /number=4 ignored annotation: polyA_signal 6138..6143 ignored annotation: BASE COUNT 2145 a 1491 c 1421 g 2167 t mRNA range 1039..1192 mRNA range 2063..2204 mRNA range 3720..3815 mRNA range 5960..6160 CDS range 2064..2204 CDS range 3720..3815 CDS range 5960..6001 seq_ini = 1 seq_fin = 7224 i = 6001 last codon bas = tt[taa]atc last codon lab = EF[DEF]YYY === HSHAP1 === locus = HSHAP1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="Lorist" ignored annotation: exon <587..587 ignored annotation: /number=1 ignored annotation: intron 588..769 ignored annotation: /number=1 ignored annotation: exon 770..895 ignored annotation: /number=2 ignored annotation: gene 838..2699 ignored annotation: /gene="HAP1" CDS = 838..895,1106..1293,1859..2051,2182..2699 ignored annotation: /gene="HAP1" ignored annotation: /codon_start=1 ignored annotation: /product="AP endonuclease 1" ignored annotation: /db_xref="PID:g32022" ignored annotation: /db_xref="SWISS-PROT:P27695" translation = MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL ignored annotation: intron 896..1105 ignored annotation: /gene="HAP1" ignored annotation: /number=2 ignored annotation: exon 1106..1293 ignored annotation: /gene="HAP1" ignored annotation: /number=3 ignored annotation: intron 1294..1858 ignored annotation: /gene="HAP1" ignored annotation: /number=3 ignored annotation: exon 1859..2051 ignored annotation: /gene="HAP1" ignored annotation: /number=4 ignored annotation: intron 2052..2181 ignored annotation: /gene="HAP1" ignored annotation: /number=4 ignored annotation: exon 2182..>2699 ignored annotation: /gene="HAP1" ignored annotation: /number=5 ignored annotation: BASE COUNT 712 a 713 c 714 g 818 t // ** orig/raws/HSHAP1:118: missing "mRNA" entry === HSHCC1GEN === locus = HSHCC1GEN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="ph3b7" ignored annotation: /dev_stage="adult" ignored annotation: /tissue_type="placenta" ignored annotation: /clone_lib="lambda FIX II, Cat.Nr. 946203, Stratagene" ignored annotation: /sex="male" ignored annotation: TATA_signal 727..733 ignored annotation: /note="putative, determined by consensus rules." ignored annotation: 5'UTR 764..833 ignored annotation: /note="first base determined by means of consensus rules" ignored annotation: exon 764..912 ignored annotation: /note="first base determined by means of consensus rules; ignored annotation: base 780 is the first base of cDNA (Z49270)" ignored annotation: /number=1 CDS = 834..912,3021..3135,3585..3672 ignored annotation: /codon_start=1 ignored annotation: /product="chemokine HCC-1" ignored annotation: /db_xref="PID:g1004267" translation = MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN ignored annotation: intron 913..3020 ignored annotation: /number=1 ignored annotation: exon 3021..3135 ignored annotation: /number=2 ignored annotation: intron 3136..3584 ignored annotation: /number=2 ignored annotation: exon 3585..3817 ignored annotation: /number=3 ignored annotation: 3'UTR 3673..3817 ignored annotation: BASE COUNT 1023 a 1048 c 1004 g 962 t // ** orig/raws/HSHCC1GEN:123: missing "mRNA" entry === HSHCF1 === locus = HSHCF1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="X.3000.11" ignored annotation: /clone_lib="genomic pWE15 cosmid" ignored annotation: /clone="430" ignored annotation: /chromosome="X" ignored annotation: /map="Xq28" ignored annotation: exon 101..249 ignored annotation: /gene="HCFC1" ignored annotation: /number=2 mRNA = 101..249,543..703,1393..1601,2520..2604,3178..3284,4413..4592,4666..5025,5336..5496,6061..6264,6579..6803,6942..7046,7290..7509,7763..7905,8060..8198,8412..8632,9250..10726,11022..11185,11834..12278,12633..12950,13081..13199,13301..13438,13790..13975,14246..14546,15171..15234,15399..17227 ignored annotation: /gene="HCFC1" ignored annotation: /product="host cell factor" ignored annotation: gene 101..17227 ignored annotation: /gene="HCFC1" CDS = 205..249,543..703,1393..1601,2520..2604,3178..3284,4413..4592,4666..5025,5336..5496,6061..6264,6579..6803,6942..7046,7290..7509,7763..7905,8060..8198,8412..8632,9250..10726,11022..11185,11834..12278,12633..12950,13081..13199,13301..13438,13790..13975,14246..14546,15171..15234,15399..15438 ignored annotation: /gene="HCFC1" ignored annotation: /codon_start=1 ignored annotation: /product="host cell factor" ignored annotation: /db_xref="PID:g558349" translation = MVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAPPTTTTIQVLPTVPGSSISVPTAARTQGVPAVLKVTGPQATTGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSSPQMSGMAALAAAAAATQKIPPSSRPTVLSVPAGTTIVKTMAVTPGTTTLPATVKVASSPVMVSVSNPATRMLKTAAAQVGTSVSSATNTSTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTIITTTQASGAGTKPTILGISSVSPSTTKPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPTITMQPVSQPTQVTLITAPSGVEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDVQPGTVTLVCSNPPCETHETGTTNTATTTVVANLGGHPQPTQVQFVCDRQEAAASLVTSTVGQQNGSVVRVCSNPPCETHETGTTNTATTATSNMAGQHGCSNPPCETHETGTTNTATTAMSSVGANHQRDARRACAAGTPAVIRISVATGALEAAQGSKPQCQTRQTSATSTTMTVMATGAPCSAGPLLGPSMAREPGGRSPAFVQLAPLSSKVRLSSPSIKDLPAGRHSHAVSTAAMTRSSVGAGEPRMAPVCESLQGGSPSTTVTVTALEALLCPSATVTQVCSNPPCETHETGTTNTATTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGTGQPEGGQQPPAGRPCETHQTTSTGTTMSVSVGALLPDATSSHRTVESGLEVAAAPSVTPQAGTALLAPFPTQRVCSNPPCETHETGTTHTATTVTSNMSSNQDPPPAASDQGEVESTQGDSVNITSSSAITTTVSSTLTRAVTTVTQSTPVPGPSVPPPEELQVSPGPRQQLPPRQLLQSASTALMGESAEVLSASQTPELPAAVDLSSTGEPSSGQESAGSAVVATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAATVTQAELGHLSAEGQEGQATTIPIVLTQQELAALVQQQQLQEAQAQQQHHHLPTEALAPADSLNDPAIESNCLNELAGTVPSTVALLPSTATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIESLGVKPDLPPPPSKAPMKKENQWFDVGVIKGTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACARGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPANKRPMSSPEMKSAPKKSKADGQ ignored annotation: intron 250..542 ignored annotation: /gene="HCFC1" ignored annotation: /number=1 ignored annotation: exon 543..703 ignored annotation: /gene="HCFC1" ignored annotation: /number=3 ignored annotation: intron 704..1392 ignored annotation: /gene="HCFC1" ignored annotation: /number=2 ignored annotation: exon 1393..1601 ignored annotation: /gene="HCFC1" ignored annotation: /number=4 ignored annotation: intron 1602..2519 ignored annotation: /gene="HCFC1" ignored annotation: /number=3 ignored annotation: exon 2520..2604 ignored annotation: /gene="HCFC1" ignored annotation: /number=5 ignored annotation: intron 2605..3177 ignored annotation: /gene="HCFC1" ignored annotation: /number=4 ignored annotation: exon 3178..3284 ignored annotation: /gene="HCFC1" ignored annotation: /number=6 ignored annotation: intron 3285..4412 ignored annotation: /gene="HCFC1" ignored annotation: /number=5 ignored annotation: exon 4413..4592 ignored annotation: /gene="HCFC1" ignored annotation: /number=7 ignored annotation: intron 4593..4665 ignored annotation: /gene="HCFC1" ignored annotation: /number=6 ignored annotation: exon 4666..5025 ignored annotation: /gene="HCFC1" ignored annotation: /number=8 ignored annotation: intron 5026..5335 ignored annotation: /gene="HCFC1" ignored annotation: /number=7 ignored annotation: exon 5336..5496 ignored annotation: /gene="HCFC1" ignored annotation: /number=9 ignored annotation: intron 5497..6060 ignored annotation: /gene="HCFC1" ignored annotation: /number=8 ignored annotation: exon 6061..6264 ignored annotation: /gene="HCFC1" ignored annotation: /number=10 ignored annotation: intron 6265..6578 ignored annotation: /gene="HCFC1" ignored annotation: /number=9 ignored annotation: exon 6579..6803 ignored annotation: /gene="HCFC1" ignored annotation: /number=10 ignored annotation: intron 6804..6941 ignored annotation: /gene="HCFC1" ignored annotation: /number=10 ignored annotation: exon 6942..7046 ignored annotation: /gene="HCFC1" ignored annotation: /number=12 ignored annotation: intron 7047..7289 ignored annotation: /gene="HCFC1" ignored annotation: /number=11 ignored annotation: exon 7290..7509 ignored annotation: /gene="HCFC1" ignored annotation: /number=13 ignored annotation: intron 7510..7762 ignored annotation: /gene="HCFC1" ignored annotation: /number=12 ignored annotation: exon 7763..7905 ignored annotation: /gene="HCFC1" ignored annotation: /number=14 ignored annotation: intron 7906..8059 ignored annotation: /gene="HCFC1" ignored annotation: /number=13 ignored annotation: exon 8060..8198 ignored annotation: /gene="HCFC1" ignored annotation: /number=15 ignored annotation: intron 8199..8411 ignored annotation: /gene="HCFC1" ignored annotation: /number=14 ignored annotation: exon 8412..8632 ignored annotation: /gene="HCFC1" ignored annotation: /number=16 ignored annotation: intron 8633..9249 ignored annotation: /gene="HCFC1" ignored annotation: /number=15 ignored annotation: exon 9250..10726 ignored annotation: /gene="HCFC1" ignored annotation: /number=17 ignored annotation: intron 10727..11021 ignored annotation: /gene="HCFC1" ignored annotation: /number=16 ignored annotation: exon 11022..11185 ignored annotation: /gene="HCFC1" ignored annotation: /number=18 ignored annotation: intron 11186..11833 ignored annotation: /gene="HCFC1" ignored annotation: /number=17 ignored annotation: exon 11834..12278 ignored annotation: /gene="HCFC1" ignored annotation: /number=19 ignored annotation: intron 12279..12632 ignored annotation: /gene="HCFC1" ignored annotation: /number=18 ignored annotation: exon 12633..12950 ignored annotation: /gene="HCFC1" ignored annotation: /number=20 ignored annotation: intron 12951..13080 ignored annotation: /gene="HCFC1" ignored annotation: /number=19 ignored annotation: exon 13081..13199 ignored annotation: /gene="HCFC1" ignored annotation: /number=21 ignored annotation: intron 13200..13300 ignored annotation: /gene="HCFC1" ignored annotation: /number=20 ignored annotation: exon 13301..13438 ignored annotation: /gene="HCFC1" ignored annotation: /number=22 ignored annotation: intron 13439..13789 ignored annotation: /gene="HCFC1" ignored annotation: /number=21 ignored annotation: exon 13790..13975 ignored annotation: /gene="HCFC1" ignored annotation: /number=23 ignored annotation: intron 13976..14245 ignored annotation: /gene="HCFC1" ignored annotation: /number=22 ignored annotation: exon 14246..14546 ignored annotation: /gene="HCFC1" ignored annotation: /number=24 ignored annotation: intron 14547..15170 ignored annotation: /gene="HCFC1" ignored annotation: /number=23 ignored annotation: exon 15171..15234 ignored annotation: /gene="HCFC1" ignored annotation: /number=25 ignored annotation: intron 15235..15398 ignored annotation: /gene="HCFC1" ignored annotation: /number=24 ignored annotation: exon 15399..17227 ignored annotation: /gene="HCFC1" ignored annotation: /number=26 ignored annotation: 3'UTR 15439..17227 ignored annotation: /gene="HCFC1" ignored annotation: polyA_signal 17203..17209 ignored annotation: /gene="HCFC1" ignored annotation: intron 17228..>17760 ignored annotation: /number=25 ignored annotation: BASE COUNT 3395 a 5476 c 5117 g 3747 t 25 others 781 gaatgtgcgc anagagcccc gtggccgggt ccctttcctc gtgctgggtt gtaaatgaga ** orig/raws/HSHCF1:267: invalid base letter "n" === HSHFE === locus = HSHFE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="ICRFy901D1223" ignored annotation: /clone_lib="ICRF YAC-library" ignored annotation: /chromosome="6" ignored annotation: /map="6p" ignored annotation: exon 1028..1324 ignored annotation: /number=1 ignored annotation: gene 1249..8035 ignored annotation: /gene="HFE(HLA-H)" CDS = 1249..1324,4652..4915,5125..5400,6494..6769,6928..7041,7995..8035 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /function="iron metabolism" ignored annotation: /note="haemochromatosis candidate gene" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e308008" ignored annotation: /db_xref="PID:g1890180" translation = MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE ignored annotation: intron 1325..4651 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=1 ignored annotation: exon 4652..4915 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=2 ignored annotation: intron 4916..5124 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=2 ignored annotation: exon 5125..5400 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=3 ignored annotation: intron 5401..6493 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=3 ignored annotation: exon 6494..6769 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=4 ignored annotation: intron 6770..6927 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=4 ignored annotation: exon 6928..7041 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=5 ignored annotation: intron 7042..7994 ignored annotation: /gene="HFE(HLA-H)" ignored annotation: /number=5 ignored annotation: exon 7995..9050 ignored annotation: /number=6 ignored annotation: intron 9051..10205 ignored annotation: /number=6 ignored annotation: exon 10206..10637 ignored annotation: /number=7 ignored annotation: polyA_signal 10617..10622 ignored annotation: BASE COUNT 3383 a 2474 c 2911 g 3378 t // ** orig/raws/HSHFE:288: missing "mRNA" entry === HSHH3X3B === locus = HSHH3X3B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /cell_line="GM2132" ignored annotation: CAAT_signal 626..630 ignored annotation: TATA_signal 696..700 ignored annotation: prim_transcript 741..3043 ignored annotation: exon 741..847 ignored annotation: /number=1 ignored annotation: 5'UTR join(741..847,1320..1329) ignored annotation: intron 848..1319 ignored annotation: /number=1 ignored annotation: exon 1320..1457 ignored annotation: /number=2 ignored annotation: gene 1330..1909 ignored annotation: /gene="hH3.3B" CDS = 1330..1457,1541..1694,1781..1909 ignored annotation: /gene="hH3.3B" ignored annotation: /function="chromatin condensation" ignored annotation: /codon_start=1 ignored annotation: /product="histone H3.3" ignored annotation: /db_xref="PID:g761716" ignored annotation: /db_xref="SWISS-PROT:P06351" translation = MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA ignored annotation: intron 1458..1540 ignored annotation: /gene="hH3.3B" ignored annotation: /number=2 ignored annotation: exon 1541..1694 ignored annotation: /gene="hH3.3B" ignored annotation: /number=3 ignored annotation: intron 1695..1780 ignored annotation: /gene="hH3.3B" ignored annotation: /number=4 ignored annotation: exon 1781..3043 ignored annotation: /number=5 ignored annotation: 3'UTR 1910..3043 ignored annotation: polyA_signal 2233..2238 ignored annotation: polyA_signal 2463..2468 ignored annotation: polyA_signal 3027..3032 ignored annotation: polyA_site 3043 ignored annotation: BASE COUNT 803 a 710 c 849 g 914 t // ** orig/raws/HSHH3X3B:123: missing "mRNA" entry === HSHHA2GEN === locus = HSHHA2GEN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="circulating lymphocytes" ignored annotation: /clone_lib="lambda DashII" ignored annotation: /clone="ghkI2.12, ghkI2.17" ignored annotation: /chromosome="17" ignored annotation: /map="q12-21" ignored annotation: TATA_signal 4506..4511 ignored annotation: /note="putative" ignored annotation: exon 4520..5048 ignored annotation: /number=1 ignored annotation: gene 4710..11791 ignored annotation: /gene="hHa2" CDS = 4710..5048,5730..5812,5977..6133,7463..7624,7703..7828,8856..9076,11662..11791 ignored annotation: /gene="hHa2" ignored annotation: /codon_start=1 ignored annotation: /product="HHa2 hair keratin type I intermediate filament" ignored annotation: /db_xref="PID:e195474" ignored annotation: /db_xref="PID:g1668740" translation = MACLPSVCLPTTFRPASCLSKTYLSSSCQAASGISGSMGPGSWYSEGAFNGNEKETMQFLNDRLASYLTRVRQLEQENAELESRIQEASHSQVLTMTPDYQSHFRTIDQLQQKILCTKAENARMVVNIDNAKLAADDFRAKYEAELAMRQLVEADINGLRRILDDLTLCKADLEAQVESLKEELMCLKKNHEEEVGSLRCQLGDRLNIEVDAAPPVDLTRVLEEMRCQYEAMVEANRRDVEEWFNMQMEELNQQVATSSEQLQNYQSDIIDLRRTVNTLEIELQAQHSLRDSLENTLTESEARYSSQLAQMQCMITNVEAQLAEIRAELERQNQEYQVLLDVRARLEGEINTYRSLLESEDCKLPCNPCSTPSCTTCVPSPCVTRTVCVPRTVGMPCSPCPQGRY ignored annotation: intron 5049..5729 ignored annotation: /gene="hHa2" ignored annotation: /number=1 ignored annotation: exon 5730..5812 ignored annotation: /gene="hHa2" ignored annotation: /number=2 ignored annotation: intron 5813..5976 ignored annotation: /gene="hHa2" ignored annotation: /number=2 ignored annotation: exon 5977..6133 ignored annotation: /gene="hHa2" ignored annotation: /number=3 ignored annotation: intron 6134..7462 ignored annotation: /gene="hHa2" ignored annotation: /number=3 ignored annotation: exon 7463..7624 ignored annotation: /gene="hHa2" ignored annotation: /number=4 ignored annotation: intron 7625..7702 ignored annotation: /gene="hHa2" ignored annotation: /number=4 ignored annotation: exon 7703..7828 ignored annotation: /gene="hHa2" ignored annotation: /number=5 ignored annotation: intron 7829..8855 ignored annotation: /gene="hHa2" ignored annotation: /number=5 ignored annotation: exon 8856..9076 ignored annotation: /gene="hHa2" ignored annotation: /number=6 ignored annotation: intron 9077..11661 ignored annotation: /gene="hHa2" ignored annotation: /number=6 ignored annotation: exon 11662..12091 ignored annotation: /number=7 ignored annotation: BASE COUNT 3568 a 3182 c 3484 g 3883 t // ** orig/raws/HSHHA2GEN:327: missing "mRNA" entry === HSHLAA1 === locus = HSHLAA1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: CAAT_signal 445..449 ignored annotation: TATA_signal 471..475 ignored annotation: exon 523..597 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=1 ignored annotation: /product="HLA-A1 Class I Antigen" CDS = 523..595,726..995,1236..1511,2091..2366,2469..2585,3028..3060,3203..3250,3420..3424 ignored annotation: /gene="HLA-A1, MHC Class I precusor" ignored annotation: /codon_start=1 ignored annotation: /product="HLA-A1 Class I Antigen precursor" ignored annotation: /db_xref="PID:g860968" ignored annotation: /db_xref="SWISS-PROT:P30443" translation = MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLTACKV ignored annotation: sig_peptide 523..597 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: gene 523..3424 ignored annotation: /gene="HLA-A1, MHC Class I precusor" ignored annotation: mat_peptide join(523..595,726..995,1236..1511,2091..2366,2469..2585, ignored annotation: 3028..3060,3203..3250,3420..3421) ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /product="HLA-A1 Class I Antigen precursor" ignored annotation: gene 523..3421 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: intron 596..725 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=1 ignored annotation: exon 726..995 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=2 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: intron 996..1235 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=2 ignored annotation: exon 1236..1511 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=3 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: intron 1512..2090 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=3 ignored annotation: exon 2091..2366 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=4 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: intron 2367..2468 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=4 ignored annotation: exon 2469..2585 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=5 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: intron 2586..3027 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=5 ignored annotation: exon 3028..3060 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=6 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: intron 3061..3202 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=6 ignored annotation: exon 3203..3250 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=7 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: intron 3251..3419 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=7 ignored annotation: exon 3420..3421 ignored annotation: /gene="HLA-A1, MHC Class I" ignored annotation: /number=8 ignored annotation: /product="HLA-A1 Class I Antigen" ignored annotation: misc_signal 3422..3424 ignored annotation: /gene="HLA-A1, MHC Class I precusor" ignored annotation: /note="termination codon" ignored annotation: polyA_signal 3718..3724 ignored annotation: BASE COUNT 769 a 1072 c 1164 g 835 t // ** orig/raws/HSHLAA1:173: missing "mRNA" entry === HSHLADMBG === locus = HSHLADMBG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="cosmid HA14" ignored annotation: /chromosome="6" ignored annotation: /map="p21.3" ignored annotation: promoter 19..28 ignored annotation: /note="NFkB" ignored annotation: promoter 73..82 ignored annotation: /note="J-box" ignored annotation: promoter 119..128 ignored annotation: /note="J-box" ignored annotation: promoter 134..147 ignored annotation: /note="Sp1" ignored annotation: promoter 313..322 ignored annotation: /note="J-box" ignored annotation: promoter 439..448 ignored annotation: /note="J-box" ignored annotation: promoter 440..458 ignored annotation: /note="X-box" ignored annotation: promoter 478..487 ignored annotation: /note="Y-box" ignored annotation: CAAT_signal 513..517 ignored annotation: promoter 574..588 ignored annotation: /note="Sp1" ignored annotation: promoter 582..591 ignored annotation: /note="NFkB" ignored annotation: promoter 740..749 ignored annotation: /note="J-box" ignored annotation: gene 756..6592 ignored annotation: /gene="HLA-DMB" CDS = 756..810,2598..2879,4107..4391,5911..6027,6186..6221,6576..6592 ignored annotation: /gene="HLA-DMB" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g512472" ignored annotation: /db_xref="SWISS-PROT:P28068" translation = MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS ignored annotation: exon 756..810 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: intron 811..2597 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=1 ignored annotation: promoter 829..838 ignored annotation: /gene="HLA-DMB" ignored annotation: /note="NFkB" ignored annotation: repeat_region 1564..1814 ignored annotation: /rpt_family="MER21" ignored annotation: repeat_region complement(1899..2025) ignored annotation: /rpt_family="MER21" ignored annotation: exon 2598..2879 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: intron 2880..4106 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=2 ignored annotation: exon 4107..4391 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: intron 4392..5910 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=3 ignored annotation: exon 5911..6027 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: intron 6028..6185 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=4 ignored annotation: exon 6186..6221 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=5 ignored annotation: /evidence=experimental ignored annotation: intron 6222..6575 ignored annotation: /gene="HLA-DMB" ignored annotation: /number=5 ignored annotation: exon 6576..6915 ignored annotation: /number=6 ignored annotation: /evidence=experimental ignored annotation: polyA_signal 6910..6915 ignored annotation: BASE COUNT 1858 a 1423 c 1717 g 1935 t // ** orig/raws/HSHLADMBG:230: missing "mRNA" entry === HSHLADZA === locus = HSHLADZA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 1..83 ignored annotation: /note="homology to Alu I repeat" ignored annotation: promoter 1649..1669 ignored annotation: /note="put. promoter sequence" ignored annotation: promoter 1686..1700 ignored annotation: /note="put. promoter sequence" ignored annotation: CAAT_signal 1720..1726 ignored annotation: /note="pot. CAT-box" ignored annotation: exon <1816..1897 ignored annotation: /number=1 ignored annotation: sig_peptide 1816..1890 mRNA = <1816..1897,3091..3339,3759..4040,4136..4271,4510..4790 CDS = 1816..1897,3091..3339,3759..4040,4136..4271,4510..4513 ignored annotation: /codon_start=1 ignored annotation: /product="DZ-alpha protein" ignored annotation: /db_xref="PID:g1335103" ignored annotation: /db_xref="SWISS-PROT:P06340" translation = MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLIIMGTYVSSVPR ignored annotation: mat_peptide join(1891..1897,3091..3339,3759..4040,4136..4271,4510) ignored annotation: /product="mature DZ-alpha protein" ignored annotation: intron 1898..3090 ignored annotation: /number=1 ignored annotation: exon 3091..3339 ignored annotation: /number=2 ignored annotation: intron 3340..3758 ignored annotation: /number=2 ignored annotation: exon 3759..4040 ignored annotation: /number=3 ignored annotation: intron 4041..4135 ignored annotation: /number=3 ignored annotation: exon 4136..4241 ignored annotation: /number=4 ignored annotation: intron 4272..4509 ignored annotation: /number=4 ignored annotation: exon 4510..4790 ignored annotation: /number=5 ignored annotation: polyA_signal 4767..4772 ignored annotation: polyA_site 4790 ignored annotation: /note="put. polyA site" ignored annotation: misc_feature 5467..>5691 ignored annotation: /note="homology to Alu I repeat" ignored annotation: BASE COUNT 1353 a 1567 c 1308 g 1463 t mRNA range 1816..1897 mRNA range 3091..3339 mRNA range 3759..4040 mRNA range 4136..4271 mRNA range 4510..4790 CDS range 1816..1897 CDS range 3091..3339 CDS range 3759..4040 CDS range 4136..4271 CDS range 4510..4513 seq_ini = 1 seq_fin = 5691 i = 4513 last codon bas = gg[taa]tga last codon lab = NF[DEF]YYY === HSHNRNPA === locus = HSHNRNPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="pES5" ignored annotation: /tissue_type="liver" ignored annotation: /clone_lib="lambdaCh4A." ignored annotation: misc_feature 695 ignored annotation: /note="mRNA initiation site" ignored annotation: exon 695..813 ignored annotation: /number=1 mRNA = 695..813,1377..1493,1789..1935,2084..2294,2388..2480,2567..2659,2794..2868,3806..3961,4252..4311,4543..5240 ignored annotation: misc_feature 715 ignored annotation: /note="mRNA initiation site" ignored annotation: misc_feature 735 ignored annotation: /note="mRNA initiation site" CDS = 799..813,1377..1493,1789..1935,2084..2294,2388..2480,2567..2659,2794..2868,3806..3961,4252..4307 ignored annotation: /codon_start=1 ignored annotation: /product="hnrnp a1 protein" ignored annotation: /db_xref="PID:g296650" ignored annotation: /db_xref="SWISS-PROT:P09651" translation = MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF ignored annotation: intron 814..1376 ignored annotation: /number=1 ignored annotation: exon 1377..1493 ignored annotation: /number=2 ignored annotation: intron 1494..1788 ignored annotation: /number=2 ignored annotation: exon 1789..1935 ignored annotation: /number=3 ignored annotation: intron 1936..2083 ignored annotation: /number=3 ignored annotation: exon 2084..2294 ignored annotation: /number=4 ignored annotation: intron 2295..2387 ignored annotation: /number=4 ignored annotation: exon 2388..2480 ignored annotation: /number=5 ignored annotation: intron 2481..2566 ignored annotation: /number=5 ignored annotation: exon 2567..2659 ignored annotation: /number=6 ignored annotation: intron 2660..2793 ignored annotation: /number=6 ignored annotation: exon 2794..2868 ignored annotation: /number=7 ignored annotation: intron 2869..3805 ignored annotation: /number=7 ignored annotation: exon 3806..3961 ignored annotation: /number=8 ignored annotation: intron 3962..4251 ignored annotation: /number=8 ignored annotation: exon 4252..4311 ignored annotation: /number=9 ignored annotation: intron 4312..4542 ignored annotation: /number=9 ignored annotation: exon 4543..5240 ignored annotation: /number=10 ignored annotation: BASE COUNT 1476 a 1052 c 1270 g 1570 t mRNA range 695..813 mRNA range 1377..1493 mRNA range 1789..1935 mRNA range 2084..2294 mRNA range 2388..2480 mRNA range 2567..2659 mRNA range 2794..2868 mRNA range 3806..3961 mRNA range 4252..4311 mRNA range 4543..5240 CDS range 799..813 CDS range 1377..1493 CDS range 1789..1935 CDS range 2084..2294 CDS range 2388..2480 CDS range 2567..2659 CDS range 2794..2868 CDS range 3806..3961 CDS range 4252..4307 seq_ini = 1 seq_fin = 5368 i = 4307 last codon bas = tt[taa]tta last codon lab = EF[DEF]YYY === HSHOX3D === locus = HSHOX3D ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="pcos2EMBL" ignored annotation: /map="q12-q13" ignored annotation: TATA_signal 2251..2256 ignored annotation: /evidence=experimental mRNA = 2280..2808,3507..4589 ignored annotation: /gene="HOX3D" ignored annotation: /evidence=experimental ignored annotation: misc_feature 2280 ignored annotation: /gene="HOX3D" ignored annotation: /note="transcription start site" ignored annotation: /evidence=experimental ignored annotation: exon 2280..2808 ignored annotation: /gene="HOX3D" ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: gene 2280..4589 ignored annotation: /gene="HOX3D" CDS = 2355..2808,3507..3721 ignored annotation: /gene="HOX3D" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="homeoprotein HOX3D" ignored annotation: /db_xref="PID:g32388" ignored annotation: /db_xref="SWISS-PROT:Q00444" translation = MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL ignored annotation: intron 2809..3506 ignored annotation: /gene="HOX3D" ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: exon 3507..4589 ignored annotation: /gene="HOX3D" ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: BASE COUNT 1037 a 1522 c 1332 g 1077 t mRNA range 2280..2808 mRNA range 3507..4589 CDS range 2355..2808 CDS range 3507..3721 seq_ini = 1 seq_fin = 4968 i = 3721 last codon bas = tt[tag]agg last codon lab = EF[DEF]YYY === HSHOX51 === locus = HSHOX51 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda 13G." ignored annotation: /dev_stage="adult" ignored annotation: /chromosome="2" ignored annotation: /map="q31-37" ignored annotation: TATA_signal 347..350 ignored annotation: exon 376..2051 ignored annotation: /number=1 mRNA = 376..2051,2593..6053 ignored annotation: prim_transcript 376..6053 CDS = 1619..2051,2593..2927 ignored annotation: /codon_start=1 ignored annotation: /product="hox 5.1 protein" ignored annotation: /db_xref="PID:g296652" ignored annotation: /db_xref="SWISS-PROT:P09016" translation = MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL ignored annotation: intron 2052..2592 ignored annotation: /number=1 ignored annotation: exon 2593..6053 ignored annotation: /number=2 ignored annotation: misc_feature 2619..2801 ignored annotation: /note="homeobox" ignored annotation: polyA_signal 3192..3197 ignored annotation: polyA_signal 5971..5976 ignored annotation: polyA_signal 6039..6044 ignored annotation: BASE COUNT 1587 a 1433 c 1686 g 1599 t mRNA range 376..2051 mRNA range 2593..6053 CDS range 1619..2051 CDS range 2593..2927 seq_ini = 1 seq_fin = 6305 i = 2927 last codon bas = ta[tag]aag last codon lab = EF[DEF]YYY === HSHSC70 === locus = HSHSC70 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="phage521" ignored annotation: /clone_lib="human liver DNA in lambda L47.1" ignored annotation: misc_feature 4..17 ignored annotation: /note="heat shock consensus element" ignored annotation: misc_feature 109..113 ignored annotation: /note="regulatory sequence" ignored annotation: misc_feature 178..191 ignored annotation: /note="heat shock consensus element" ignored annotation: TATA_signal 199..203 mRNA = 227..304,1035..1244,1567..1772,2097..2249,2337..2892,3104..3306,3535..3733,3881..4113,4445..>4630 ignored annotation: exon 227..304 ignored annotation: /number=1 ignored annotation: prim_transcript 227..>4630 ignored annotation: intron 305..1034 ignored annotation: /number=1 ignored annotation: exon 1035..1244 ignored annotation: /number=2 CDS = 1040..1244,1567..1772,2097..2249,2337..2892,3104..3306,3535..3733,3881..4113,4445..4630 ignored annotation: /codon_start=1 ignored annotation: /product="71 Kd heat shock cognate protein" ignored annotation: /db_xref="PID:g32467" ignored annotation: /db_xref="SWISS-PROT:P11142" translation = MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD ignored annotation: intron 1245..1566 ignored annotation: /number=2 ignored annotation: exon 1567..1772 ignored annotation: /number=3 ignored annotation: intron 1773..2096 ignored annotation: /number=3 ignored annotation: exon 2097..2249 ignored annotation: /number=4 ignored annotation: intron 2250..2336 ignored annotation: /number=4 ignored annotation: exon 2337..2892 ignored annotation: /number=5 ignored annotation: intron 2893..3103 ignored annotation: /number=5 ignored annotation: exon 3104..3306 ignored annotation: /number=6 ignored annotation: intron 3307..3534 ignored annotation: /number=6 ignored annotation: exon 3535..3733 ignored annotation: /number=7 ignored annotation: intron 3734..3880 ignored annotation: /number=7 ignored annotation: exon 3881..4113 ignored annotation: /number=8 ignored annotation: intron 4114..4444 ignored annotation: /number=8 ignored annotation: exon 4445..>4630 ignored annotation: /number=9 ignored annotation: polyA_signal 4843..4848 ignored annotation: BASE COUNT 1411 a 1079 c 1420 g 1498 t mRNA range 227..304 mRNA range 1035..1244 mRNA range 1567..1772 mRNA range 2097..2249 mRNA range 2337..2892 mRNA range 3104..3306 mRNA range 3535..3733 mRNA range 3881..4113 mRNA range 4445..4630 CDS range 1040..1244 CDS range 1567..1772 CDS range 2097..2249 CDS range 2337..2892 CDS range 3104..3306 CDS range 3535..3733 CDS range 3881..4113 CDS range 4445..4630 seq_ini = 1 seq_fin = 5408 i = 4630 last codon bas = at[taa]gcc last codon lab = EF[DEF]NNN === HSIFNAR === locus = HSIFNAR ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="DAUDI" ignored annotation: /chromosome="21" ignored annotation: /map="21q22.1" ignored annotation: prim_transcript <1..31791 ignored annotation: prim_transcript <1..32293 mRNA = 660..829,11201..11324,16768..16943,19033..19187,19300..19441,21017..21131,24861..25060,25159..25313,28528..28678,29408..29553,31085..31791 ignored annotation: exon 660..829 ignored annotation: /number=1 mRNA join(660..829,11201..11324,16768..16943,19033..19187, ** orig/raws/HSIFNAR:40: more than one "mRNA" entry === HSIFNG === locus = HSIFNG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 347..588 ignored annotation: /number=1 mRNA = 347..588,1828..1896,1992..2174,4600..5319 ignored annotation: prim_transcript 347..5319 CDS = 475..588,1828..1896,1992..2174,4600..4734 ignored annotation: /codon_start=1 ignored annotation: /product="immune interferon" ignored annotation: /db_xref="PID:g32676" ignored annotation: /db_xref="SWISS-PROT:P01579" translation = MKYTSYILAFQLCIVLGSLGCYCQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFRGRRASQ ignored annotation: intron 589..1827 ignored annotation: /number=1 ignored annotation: exon 1828..1896 ignored annotation: /number=2 ignored annotation: intron 1897..1991 ignored annotation: /number=2 ignored annotation: exon 1992..2174 ignored annotation: /number=3 ignored annotation: intron 2175..4599 ignored annotation: /number=3 ignored annotation: exon 4600..5319 ignored annotation: /number=4 ignored annotation: polyA_site 5319 ignored annotation: BASE COUNT 1829 a 1012 c 1170 g 1950 t mRNA range 347..588 mRNA range 1828..1896 mRNA range 1992..2174 mRNA range 4600..5319 CDS range 475..588 CDS range 1828..1896 CDS range 1992..2174 CDS range 4600..4734 seq_ini = 1 seq_fin = 5961 i = 4734 last codon bas = ag[taa]tgg last codon lab = EF[DEF]YYY === HSIGK12 === locus = HSIGK12 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: unsure 263 ignored annotation: /note="may be C or T" ignored annotation: misc_feature 299..313 ignored annotation: /note="put. regulatory element pd" ignored annotation: misc_feature 330..339 ignored annotation: /note="put. regulatory element dc" ignored annotation: TATA_signal 372..379 ignored annotation: exon <427..481 ignored annotation: /note="leader peptide" ignored annotation: /number=1 CDS = 427..481,608..723 ignored annotation: /codon_start=1 ignored annotation: /product="immunoglobulin kappa light chain subgroup V" ignored annotation: /db_xref="PID:g642240" translation = MDMRVPAQLLGLLLLWLPGARCAIQLTQSPSSLSASVGDRVTITCRASQGISSALA ignored annotation: intron 482..607 ignored annotation: /number=1 ignored annotation: exon 608..903 ignored annotation: /number=2 ignored annotation: misc_feature 906..912 ignored annotation: /note="heptanucleotide box, not canonical" ignored annotation: misc_feature 1581..2064 ignored annotation: /note="L-sequence region" ignored annotation: unsure 2257 ignored annotation: /note="not unambiguously determined" ignored annotation: unsure 2300 ignored annotation: /note="not unambiguously determined" ignored annotation: BASE COUNT 685 a 497 c 510 g 657 t 3 others 241 ttacctggga cacctgggga caytgaactg gtgctgagtt actgagatga gccagccctg ** orig/raws/HSIGK12:69: invalid base letter "y" === HSIL05 === locus = HSIL05 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: promoter 1339..1344 ignored annotation: /note="TATA-box" ignored annotation: precursor_RNA 1363..6403 ignored annotation: /note="primary transcript" CDS = 1416..1562,1653..1712,4005..4148,6010..6120 ignored annotation: /codon_start=1 ignored annotation: /product="interleukin" ignored annotation: /db_xref="PID:g33784" ignored annotation: /db_xref="SWISS-PROT:P01585" translation = MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIISTLT ignored annotation: intron 1563..1652 ignored annotation: /note="intron I" ignored annotation: intron 1713..4004 ignored annotation: /note="intron II" ignored annotation: intron 4149..6009 ignored annotation: /note="intron III" ignored annotation: misc_feature 6382..6387 ignored annotation: /note="polyadenylation signal" ignored annotation: BASE COUNT 2342 a 1113 c 1064 g 2165 t // ** orig/raws/HSIL05:166: missing "mRNA" entry === HSIL1AG === locus = HSIL1AG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 254..393 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 1375..1382 ignored annotation: /note="direct repeat 1" ignored annotation: misc_signal 1375..1390 ignored annotation: /note="pot. transcription activator (seq. homolog. to ignored annotation: adenovirus 2 major late promoter transcription factor ignored annotation: (MLTF) binding site)" ignored annotation: repeat_unit 1375..1382 ignored annotation: /note="inverted repeat A" ignored annotation: repeat_unit 1383..1390 ignored annotation: /note="inverted repeat A'" ignored annotation: repeat_region 1383..1390 ignored annotation: /note="direct repeat 1" ignored annotation: TATA_signal 1407..1413 ignored annotation: prim_transcript 1438..11643 ignored annotation: exon 1438..1488 ignored annotation: /number=1 mRNA = 1438..1488,2153..2207,3166..3214,4103..4325,6262..6432,7815..7939,10290..11643 ignored annotation: intron 1489..2152 ignored annotation: /number=1 ignored annotation: exon 2153..2207 ignored annotation: /number=2 CDS = 2161..2207,3166..3214,4103..4325,6262..6432,7815..7939,10290..10490 ignored annotation: /codon_start=1 ignored annotation: /product="IL-1-alpha" ignored annotation: /db_xref="PID:g33786" ignored annotation: /db_xref="SWISS-PROT:P01583" translation = MAKVPDMFEDLKNCYSENEEDSSSIDHLSLNQKSFYHVSYGPLHEGCMDQSVSLSISETSKTSKLTFKESMVVVATNGKVLKKRRLSLSQSITDDDLEAIANDSEEEIIKPRSSPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLYVTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA ignored annotation: intron 2208..3165 ignored annotation: /number=2 ignored annotation: exon 3166..3214 ignored annotation: /number=3 ignored annotation: intron 3215..4102 ignored annotation: /number=3 ignored annotation: exon 4103..4325 ignored annotation: /number=4 ignored annotation: intron 4326..6261 ignored annotation: /number=4 ignored annotation: misc_feature 4893..5174 ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 6262..6432 ignored annotation: /number=5 ignored annotation: intron 6433..7814 ignored annotation: /number=5 ignored annotation: misc_feature 7695..7744 ignored annotation: /note="poly [dA-dC] tract" ignored annotation: exon 7815..7939 ignored annotation: /number=6 ignored annotation: intron 7940..10289 ignored annotation: /number=6 ignored annotation: misc_feature 8466..8483 ignored annotation: /note="poly[dA-dC] tract" ignored annotation: repeat_region 8912..9137 ignored annotation: /note="5 x 46 bp repeat" ignored annotation: misc_feature 9770..9806 ignored annotation: /note="poly [dT-dG] tract" ignored annotation: exon 10290..11643 ignored annotation: /number=7 ignored annotation: polyA_site 11643 ignored annotation: /note="polyA site" ignored annotation: misc_feature 11863..11970 ignored annotation: /note="Alu repetitive sequence" ignored annotation: BASE COUNT 3708 a 2489 c 2226 g 3547 t mRNA range 1438..1488 mRNA range 2153..2207 mRNA range 3166..3214 mRNA range 4103..4325 mRNA range 6262..6432 mRNA range 7815..7939 mRNA range 10290..11643 CDS range 2161..2207 CDS range 3166..3214 CDS range 4103..4325 CDS range 6262..6432 CDS range 7815..7939 CDS range 10290..10490 seq_ini = 1 seq_fin = 11970 i = 10490 last codon bas = cg[tag]gtc last codon lab = EF[DEF]YYY === HSIL1RECA === locus = HSIL1RECA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="lambda EMBL3 genomic library" ignored annotation: /chromosome="2" ignored annotation: /map="q13-14.1" ignored annotation: TATA_signal 5949..5953 ignored annotation: exon 5989..6120 ignored annotation: /number=1 mRNA = 5989..6120,7952..8040,9418..9530,11029..12386 CDS = 6005..6120,7952..8040,9418..9530,11029..11244 ignored annotation: /codon_start=1 ignored annotation: /product="Interleukin-1 receptor antagonist" ignored annotation: /db_xref="PID:g33799" ignored annotation: /db_xref="SWISS-PROT:P18510" translation = MEICRGLRSHLITLLLFLFHSETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE ignored annotation: intron 6121..7951 ignored annotation: /number=1 ignored annotation: exon 7952..8040 ignored annotation: /number=2 ignored annotation: intron 8041..9417 ignored annotation: /number=2 ignored annotation: exon 9418..9530 ignored annotation: /number=3 ignored annotation: intron 9531..11028 ignored annotation: /number=3 ignored annotation: exon 11029..12386 ignored annotation: /number=4 ignored annotation: BASE COUNT 3217 a 2980 c 3072 g 3294 t 2 others 12421 tttgggtata gagtgctgag gaaactgaaa gaccaatgtg tyttycttac cccagaggct ** orig/raws/HSIL1RECA:265: invalid base letter "y" === HSINSU === locus = HSINSU ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 1340..1823 ignored annotation: /note="polymorphic region (tandem repeats)" ignored annotation: conflict 2101 ignored annotation: /note="G is AGG in [2]" ignored annotation: /citation=[2] ignored annotation: misc_feature 2156..2161 ignored annotation: /note="TATAAA (Hogness) box" mRNA = 2186..2227 ignored annotation: /note="preproinsulin mRNA (part 1)" ignored annotation: precursor_RNA 2186..3615 ignored annotation: /note="preproinsulin primary transcript" ignored annotation: intron 2228..2406 ignored annotation: /note="intron" ignored annotation: allele 2401 ignored annotation: /note="T can be A (see [2])" mRNA 2407..2610 ** orig/raws/HSINSU:63: more than one "mRNA" entry === HSINT1G === locus = HSINT1G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: promoter 259..263 ignored annotation: /note="pot. TATA-box" CDS = 465..568,1282..1535,2238..2503,2966..3454 ignored annotation: /codon_start=1 ignored annotation: /product="int-1 protein" ignored annotation: /db_xref="PID:g33936" ignored annotation: /db_xref="SWISS-PROT:P04628" translation = MGLWALLPGWVSATLLLALAALPAALAANSSGRWWGIVNVASSTNLLTDSKSLQLVLEPSLQLLSRKQRRLIRQNPGILHSVSGGLQSAVRECKWQFRNRRWNCPTAPGPHLFGKIVNRGCRETAFIFAITSAGVTHSVARSCSEGSIESCTCDYRRRGPGGPDWHWGGCSDNIDFGRLFGREFVDSGEKGRDLRFLMNLHNNEAGRTTVFSEMRQECKCHGMSGSCTVRTCWMRLPTLRAVGDVLRDRFDGASRVLYGNRGSNRASRAELLRLEPEDPAHKPPSPHDLVYFEKSPNFCTYSGRLGTAGTAGRACNSSSPALDGCELLCCGRGHRTRTQRVTERCNCTFHWCCHVSCRNCTHTRVLHECL ignored annotation: intron 569..1281 ignored annotation: /note="intron I" ignored annotation: intron 1536..2237 ignored annotation: /note="intron II" ignored annotation: intron 2504..2965 ignored annotation: /note="intron III" ignored annotation: misc_feature 4410..4415 ignored annotation: /note="pot. polyadenylation signal" ignored annotation: BASE COUNT 805 a 1523 c 1320 g 874 t // ** orig/raws/HSINT1G:121: missing "mRNA" entry === HSINT2 === locus = HSINT2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="q13" ignored annotation: misc_feature 445 ignored annotation: /note="pot. transcription start site" ignored annotation: misc_feature 479 ignored annotation: /note="pot. alt. transcription start site" ignored annotation: misc_feature 507 ignored annotation: /note="pot. alt. transcription start site" ignored annotation: misc_feature 527 ignored annotation: /note="pot. alt. transcription start site" CDS = 936..1155,3445..3548,9197..9592 ignored annotation: /codon_start=1 ignored annotation: /product="int-2 preprotein" ignored annotation: /db_xref="PID:g312409" ignored annotation: /db_xref="SWISS-PROT:P11487" translation = MGLIWLLLLSLLEPGWPAAGPGARLRRDAGGRGGVYEHLGGAPRRRKLYCATKYHLQLHPSGRVNGSLENSAYSILEITAVEVGIVAIRGLFSGRYLAMNKRGRLYASEHYSAECEFVERIHELGYNTYASRLYRTVSSTPGARRQPSAERLWYVSVNGKGRPRRGFKTRRTQKSSLFLPRVLDHRDHEMVRQLQSGLPRPPGKGVQPRRRRQKQSPDNLEPSHVQASRLGSQLEASAH ignored annotation: sig_peptide 936..986 ignored annotation: exon <936..1155 ignored annotation: /number=1 ignored annotation: mat_peptide join(987..1155,3445..3548,9197..9589) ignored annotation: /product="int-2 protein" ignored annotation: intron 1152..3444 ignored annotation: /number=1 ignored annotation: exon 3445..3548 ignored annotation: /number=2 ignored annotation: intron 3549..9196 ignored annotation: /number=2 ignored annotation: exon 9197..9929 ignored annotation: /number=3 ignored annotation: polyA_signal 9911..9916 ignored annotation: /note="pot. polyA signal" ignored annotation: polyA_site 9929 ignored annotation: /note="polyA site" ignored annotation: BASE COUNT 2166 a 3822 c 3181 g 2439 t // ** orig/raws/HSINT2:261: missing "mRNA" entry === HSL7A === locus = HSL7A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="COS 1.1" ignored annotation: /clone_lib="cosmid h2a" ignored annotation: repeat_region 1068..1363 ignored annotation: /note="Alu-like sequence" ignored annotation: exon 2040..2072 ignored annotation: /number=1 mRNA = 2040..2072,2746..2866,3375..3524,3740..3880,4084..4163,4441..4571,4849..4918,5109..5273 ignored annotation: precursor_RNA 2040..5273 ignored annotation: /note="primary transcript" CDS = 2070..2072,2746..2866,3375..3524,3740..3880,4084..4163,4441..4571,4849..4918,5109..5213 ignored annotation: /codon_start=1 ignored annotation: /product="L7a protein" ignored annotation: /db_xref="PID:g34203" ignored annotation: /db_xref="SWISS-PROT:P11518" translation = MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG ignored annotation: intron 2073..2745 ignored annotation: /number=1 ignored annotation: exon 2746..2866 ignored annotation: /number=2 ignored annotation: intron 2867..3374 ignored annotation: /number=2 ignored annotation: exon 3375..3524 ignored annotation: /number=3 ignored annotation: intron 3525..3739 ignored annotation: /number=3 ignored annotation: exon 3740..3880 ignored annotation: /number=4 ignored annotation: intron 3881..4083 ignored annotation: /number=4 ignored annotation: exon 4084..4163 ignored annotation: /number=5 ignored annotation: intron 4164..4440 ignored annotation: /number=5 ignored annotation: exon 4441..4571 ignored annotation: /number=6 ignored annotation: intron 4572..4848 ignored annotation: /number=6 ignored annotation: exon 4849..4918 ignored annotation: /number=7 ignored annotation: intron 4919..5108 ignored annotation: /number=7 ignored annotation: exon 5109..5273 ignored annotation: /number=8 ignored annotation: BASE COUNT 1228 a 1572 c 1431 g 1275 t mRNA range 2040..2072 mRNA range 2746..2866 mRNA range 3375..3524 mRNA range 3740..3880 mRNA range 4084..4163 mRNA range 4441..4571 mRNA range 4849..4918 mRNA range 5109..5273 CDS range 2070..2072 CDS range 2746..2866 CDS range 3375..3524 CDS range 3740..3880 CDS range 4084..4163 CDS range 4441..4571 CDS range 4849..4918 CDS range 5109..5213 seq_ini = 1 seq_fin = 5506 i = 5213 last codon bas = gt[taa]atg last codon lab = EF[DEF]YYY === HSLCATG === locus = HSLCATG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="(lambda)charon30" ignored annotation: CAAT_signal 709..716 ignored annotation: TATA_signal 786..790 ignored annotation: prim_transcript 809..5052 mRNA = 809..990,1724..1880,1960..2075,2170..2265,2349..2573,4458..5052 ignored annotation: exon 809..990 ignored annotation: /number=1 CDS = 837..990,1724..1880,1960..2075,2170..2265,2349..2573,4458..5032 ignored annotation: /codon_start=1 ignored annotation: /product="lecithin-cholesterol acyltransferase (LCAT)" ignored annotation: /db_xref="PID:g34287" ignored annotation: /db_xref="SWISS-PROT:P04180" translation = MGPPGSPWQWVTLLLGLLLPPAAPFWLLNVLFPPHTTPKAELSNHTRPVILVPGCLGNQLEAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGLVSNAPGVQIRVPGFGKTYSVEYLDSSKLAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLEPGQQEEYYRKLAGLVEEMHAAYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPSRMAWPEDHVFISTPSFNYTGRDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIYDHGFPYTDPVGVLYEDGDDTVATRSTELCGLWQGRQPQPVHLLPLHGIQHLNMVFSNLTLEHINAILLGAYRQGPPASPTASPEPPPPE ignored annotation: intron 991..1723 ignored annotation: /number=1 ignored annotation: exon 1724..1880 ignored annotation: /number=2 ignored annotation: intron 1881..1959 ignored annotation: /number=2 ignored annotation: exon 1960..2075 ignored annotation: /number=3 ignored annotation: intron 2076..2169 ignored annotation: /number=3 ignored annotation: exon 2170..2265 ignored annotation: /number=4 ignored annotation: intron 2266..2348 ignored annotation: /number=4 ignored annotation: exon 2349..2573 ignored annotation: /number=5 ignored annotation: intron 2574..4457 ignored annotation: /number=5 ignored annotation: repeat_region complement(3306..3585) ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region complement(3609..3914) ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region complement(3916..4207) ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 4458..5052 ignored annotation: /number=6 ignored annotation: polyA_signal 5028..5033 ignored annotation: repeat_region 5424..5748 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 5961..6261 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 6352..6643 ignored annotation: /note="Alu repetitive sequence" ignored annotation: repeat_region 6656..6901 ignored annotation: /note="Alu repetitive sequence" ignored annotation: BASE COUNT 1473 a 2028 c 1933 g 1467 t mRNA range 809..990 mRNA range 1724..1880 mRNA range 1960..2075 mRNA range 2170..2265 mRNA range 2349..2573 mRNA range 4458..5052 CDS range 837..990 CDS range 1724..1880 CDS range 1960..2075 CDS range 2170..2265 CDS range 2349..2573 CDS range 4458..5032 seq_ini = 1 seq_fin = 6901 i = 5032 last codon bas = aa[taa]aga last codon lab = EF[DEF]YYY === HSLH01 === locus = HSLH01 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: sig_peptide join(550..564,917..961) ignored annotation: /gene="HCG" CDS = 550..564,917..1084,1319..1561 ignored annotation: /gene="HCG" ignored annotation: /codon_start=1 ignored annotation: /product="beta-Luteinizing hormone" ignored annotation: /db_xref="PID:e332193" ignored annotation: /db_xref="PID:g2292893" translation = MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHPQLSGLLFL ignored annotation: gene 550..1561 ignored annotation: /gene="HCG" ignored annotation: mat_peptide join(962..1084,1319..1558) ignored annotation: /gene="HCG" ignored annotation: BASE COUNT 274 a 530 c 527 g 331 t // ** orig/raws/HSLH01:67: missing "mRNA" entry === HSLPAPGEN === locus = HSLPAPGEN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="cosmid library" ignored annotation: /chromosome="11" ignored annotation: /map="11q13" ignored annotation: promoter 60..600 mRNA = 636..701,1968..2808 ignored annotation: /evidence=experimental ignored annotation: /product="LPAP" ignored annotation: exon 636..701 ignored annotation: /number=1 ignored annotation: /evidence=experimental CDS = 699..701,1968..2585 ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="LPAP" ignored annotation: /db_xref="PID:e242825" ignored annotation: /db_xref="PID:g1729766" translation = MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARLGAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSPEQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDLHAFAGSAAWDDSARAAGGQGLHVTAL ignored annotation: intron 702..1967 ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: exon 1968..2808 ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: BASE COUNT 603 a 1019 c 983 g 526 t mRNA range 636..701 mRNA range 1968..2808 CDS range 699..701 CDS range 1968..2585 seq_ini = 1 seq_fin = 3131 i = 2585 last codon bas = tg[tag]agg last codon lab = EF[DEF]YYY === HSLWBGTPT === locus = HSLWBGTPT ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /germline ignored annotation: /cell_type="leukocyte" ignored annotation: /clone_lib="HL11115 (Clontech)" ignored annotation: /clone="LW clone 1" ignored annotation: /chromosome="19" ignored annotation: /map="p13" ignored annotation: promoter 1..404 ignored annotation: exon 405..807 ignored annotation: /number=1 ignored annotation: gene 414..1506 ignored annotation: /gene="LW" CDS = 414..807,938..1240,1388..1506 ignored annotation: /gene="LW" ignored annotation: /note="transmembrane protein" ignored annotation: /codon_start=1 ignored annotation: /product="LW blood group" ignored annotation: /db_xref="PID:e214717" ignored annotation: /db_xref="PID:g1491708" translation = MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKCLAMKSQA ignored annotation: variation 712 ignored annotation: /gene="LW" ignored annotation: /note="A in LWa, G in LWb" ignored annotation: /replace="g" ignored annotation: intron 808..937 ignored annotation: /gene="LW" ignored annotation: /number=1 ignored annotation: exon 938..1240 ignored annotation: /gene="LW" ignored annotation: /number=2 ignored annotation: intron 1241..1387 ignored annotation: /gene="LW" ignored annotation: /number=2 ignored annotation: exon 1388..1924 ignored annotation: /number=3 ignored annotation: BASE COUNT 382 a 571 c 584 g 409 t // ** orig/raws/HSLWBGTPT:100: missing "mRNA" entry === HSMB1GENE === locus = HSMB1GENE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="MB4" ignored annotation: /chromosome="14" ignored annotation: /map="q11.2" ignored annotation: exon 588..785 ignored annotation: /gene="MB1" ignored annotation: /number=1 CDS = 588..785,1799..2105,5577..5863 ignored annotation: /gene="MB1" ignored annotation: /codon_start=1 ignored annotation: /product="proteasome" ignored annotation: /db_xref="PID:e223606" ignored annotation: /db_xref="PID:g1262338" translation = MALASVLERPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP ignored annotation: gene 588..5863 ignored annotation: /gene="MB1" ignored annotation: intron 786..1798 ignored annotation: /gene="MB1" ignored annotation: /number=1 ignored annotation: repeat_region complement(1332..1580) ignored annotation: /rpt_family="alu" ignored annotation: exon 1799..2105 ignored annotation: /gene="MB1" ignored annotation: /number=2 ignored annotation: intron 2106..5576 ignored annotation: /gene="MB1" ignored annotation: /number=2 ignored annotation: repeat_region complement(2252..2332) ignored annotation: /rpt_family="alu" ignored annotation: repeat_region 2334..2556 ignored annotation: /rpt_family="alu" ignored annotation: repeat_region 2578..2880 ignored annotation: /rpt_family="alu" ignored annotation: repeat_region complement(3005..3311) ignored annotation: /rpt_family="alu" ignored annotation: repeat_region complement(3371..3654) ignored annotation: /rpt_family="alu" ignored annotation: repeat_region complement(4519..4803) ignored annotation: /rpt_family="alu" ignored annotation: repeat_region complement(4969..5169) ignored annotation: /rpt_family="alu" ignored annotation: misc_feature 5190^5191 ignored annotation: /gene="MB1" ignored annotation: /note="deletion of about 1kb" ignored annotation: repeat_region 5204..5503 ignored annotation: /rpt_family="alu" ignored annotation: exon 5577..5863 ignored annotation: /gene="MB1" ignored annotation: /number=3 ignored annotation: BASE COUNT 1551 a 1518 c 1655 g 1778 t // ** orig/raws/HSMB1GENE:189: missing "mRNA" entry === HSMECDAG === locus = HSMECDAG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="peripheral blood leukocytes" ignored annotation: /cell_line="peripheral blood leukocytes" ignored annotation: /clone_lib="LN87" ignored annotation: /clone="lambda2" ignored annotation: /chromosome="12" ignored annotation: /map="q12-q13" ignored annotation: enhancer 529..536 ignored annotation: /note="AP-1 binding site" ignored annotation: promoter 612..621 ignored annotation: /note="Sp1 binding site" mRNA = 658..715,1316..1392,2328..2516,2701..2775,2870..2965,3403..3543,3768..3851,4038..4190 ignored annotation: /note="ME491/CD63 antigen" ignored annotation: exon 658..715 ignored annotation: /number=1 ignored annotation: intron 716..1315 ignored annotation: /number=1 ignored annotation: exon 1316..1392 ignored annotation: /number=2 CDS = 1327..1392,2328..2516,2701..2775,2870..2965,3403..3543,3768..3851,4038..4103 ignored annotation: /codon_start=1 ignored annotation: /product="ME491 /CD63 antigen" ignored annotation: /db_xref="PID:g430756" ignored annotation: /db_xref="SWISS-PROT:P08962" translation = MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM ignored annotation: intron 1393..2327 ignored annotation: /number=2 ignored annotation: exon 2328..2516 ignored annotation: /number=3 ignored annotation: intron 2517..2700 ignored annotation: /number=3 ignored annotation: exon 2701..2775 ignored annotation: /number=4 ignored annotation: intron 2776..2869 ignored annotation: /number=4 ignored annotation: exon 2870..2965 ignored annotation: /number=5 ignored annotation: intron 2966..3402 ignored annotation: /number=5 ignored annotation: exon 3403..3543 ignored annotation: /number=6 ignored annotation: intron 3544..3767 ignored annotation: /number=6 ignored annotation: exon 3768..3851 ignored annotation: /number=7 ignored annotation: intron 3852..4037 ignored annotation: /number=7 ignored annotation: exon 4038..4190 ignored annotation: /number=8 ignored annotation: polyA_signal 4164..4170 ignored annotation: BASE COUNT 817 a 1125 c 1467 g 961 t mRNA range 658..715 mRNA range 1316..1392 mRNA range 2328..2516 mRNA range 2701..2775 mRNA range 2870..2965 mRNA range 3403..3543 mRNA range 3768..3851 mRNA range 4038..4190 CDS range 1327..1392 CDS range 2328..2516 CDS range 2701..2775 CDS range 2870..2965 CDS range 3403..3543 CDS range 3768..3851 CDS range 4038..4103 seq_ini = 1 seq_fin = 4370 i = 4103 last codon bas = tg[tag]ggg last codon lab = EF[DEF]YYY === HSMED === locus = HSMED ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="tonsil genomic library in lambda gt WES lambda ignored annotation: B" ignored annotation: repeat_region 287..551 ignored annotation: /note="tandemly arranged direct repeats" ignored annotation: CAAT_signal 1114..1118 ignored annotation: TATA_signal 1230..1234 ignored annotation: exon <1287..1353 ignored annotation: /number=1 ignored annotation: sig_peptide join(1287..1353,1786..1805) ignored annotation: /product="pot. leader peptide" CDS = 1287..1353,1786..1942,2173..2314,4485..4715,4882..5088 ignored annotation: /codon_start=1 ignored annotation: /product="serine protease" ignored annotation: /db_xref="PID:g296665" ignored annotation: /db_xref="SWISS-PROT:P08246" translation = MTLGRRLACLFLACVLPALLLGGTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQRSEDNPCPHPRDPDPASRTH ignored annotation: intron 1354..1785 ignored annotation: /number=1 ignored annotation: exon 1786..1942 ignored annotation: /number=2 ignored annotation: mat_peptide join(1806..1942,2173..2314,4485..4715,4882..5085) ignored annotation: intron 1943..2172 ignored annotation: /number=2 ignored annotation: exon 2173..2314 ignored annotation: /number=3 ignored annotation: intron 2315..4484 ignored annotation: /number=3 ignored annotation: repeat_region 2538..2957 ignored annotation: /note="tandemly arranged direct repeats" ignored annotation: exon 4485..4715 ignored annotation: /number=4 ignored annotation: intron 4716..4881 ignored annotation: /number=4 ignored annotation: exon 4882..>5088 ignored annotation: /number=5 ignored annotation: polyA_signal 5146..5151 ignored annotation: BASE COUNT 1129 a 1526 c 1563 g 1074 t // ** orig/raws/HSMED:161: missing "mRNA" entry === HSMGSAG === locus = HSMGSAG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="blood" ignored annotation: /clone_lib="lambda fix blood genomic" ignored annotation: TATA_signal 21..27 mRNA = 51..229,328..451,565..648,1180..1895 ignored annotation: /gene="MGSA" ignored annotation: gene 51..1895 ignored annotation: /gene="MGSA" ignored annotation: prim_transcript 51..1895 ignored annotation: /gene="MGSA" ignored annotation: exon 51..229 ignored annotation: /gene="MGSA" ignored annotation: /number=1 CDS = 130..229,328..451,565..648,1180..1195 ignored annotation: /gene="MGSA" ignored annotation: /codon_start=1 ignored annotation: /product="melanoma growth stimulatory activity preprotein" ignored annotation: /db_xref="PID:g34626" ignored annotation: /db_xref="SWISS-PROT:P09341" translation = MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN ignored annotation: sig_peptide 130..329 ignored annotation: /gene="MGSA" ignored annotation: intron 230..327 ignored annotation: /gene="MGSA" ignored annotation: /number=1 ignored annotation: exon 328..451 ignored annotation: /gene="MGSA" ignored annotation: /number=2 ignored annotation: mat_peptide join(330..451,565..648,1180..1195) ignored annotation: /gene="MGSA" ignored annotation: /product="melanoma growth stimulatory activity protein" ignored annotation: intron 452..564 ignored annotation: /gene="MGSA" ignored annotation: /number=2 ignored annotation: exon 565..648 ignored annotation: /gene="MGSA" ignored annotation: /number=3 ignored annotation: intron 649..1179 ignored annotation: /gene="MGSA" ignored annotation: /number=3 ignored annotation: exon 1180..1895 ignored annotation: /gene="MGSA" ignored annotation: /number=4 ignored annotation: BASE COUNT 466 a 501 c 450 g 478 t mRNA range 51..229 mRNA range 328..451 mRNA range 565..648 mRNA range 1180..1895 CDS range 130..229 CDS range 328..451 CDS range 565..648 CDS range 1180..1195 seq_ini = 1 seq_fin = 1895 i = 1195 last codon bas = ac[tga]cca last codon lab = EF[DEF]YYY === HSMHCPU15 === locus = HSMHCPU15 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /haplotype="HLA DR 7" ignored annotation: /cell_line="MANN" ignored annotation: /clone="U15" ignored annotation: /chromosome="6" ignored annotation: prim_transcript 465..5833 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: exon 465..570 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=1 mRNA = 465..570,2424..2491,3547..3678,4289..4418,4648..4789,5688..5833 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: gene 465..5833 ignored annotation: /gene="MHC-encoded proteasome subunit gene" CDS = 511..570,2424..2491,3547..3678,4289..4418,4648..4789,5688..5815 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g34656" ignored annotation: /db_xref="SWISS-PROT:P28065" translation = MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE ignored annotation: intron 571..2423 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=1 ignored annotation: exon 2424..2491 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=2 ignored annotation: intron 2492..3546 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=2 ignored annotation: repeat_unit 3208..3505 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /rpt_family="ALU" ignored annotation: exon 3547..3678 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=3 ignored annotation: intron 3679..4288 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=3 ignored annotation: exon 4289..4418 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=4 ignored annotation: intron 4419..4647 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=4 ignored annotation: exon 4648..4789 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=5 ignored annotation: intron 4790..5687 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=5 ignored annotation: repeat_unit 5076..5354 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /rpt_family="ALU" ignored annotation: exon 5688..5833 ignored annotation: /gene="MHC-encoded proteasome subunit gene" ignored annotation: /number=6 ignored annotation: BASE COUNT 1490 a 1311 c 1545 g 1487 t mRNA range 465..570 mRNA range 2424..2491 mRNA range 3547..3678 mRNA range 4289..4418 mRNA range 4648..4789 mRNA range 5688..5833 CDS range 511..570 CDS range 2424..2491 CDS range 3547..3678 CDS range 4289..4418 CDS range 4648..4789 CDS range 5688..5815 seq_ini = 1 seq_fin = 5833 i = 5815 last codon bas = ag[tga]acc last codon lab = EF[DEF]YYY === HSMICAGEN === locus = HSMICAGEN ignored annotation: /organism="Homo sapiens" ignored annotation: /note="maps to class I region of major histocompatibility ignored annotation: complex; MICA4 allele" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="mann" ignored annotation: /clone_lib="M32A cosmid clone" ignored annotation: /chromosome="6" ignored annotation: /map="p21.3" ignored annotation: exon <1..109 ignored annotation: /note="leader peptide" ignored annotation: /number=1 ignored annotation: gene 40..11548 ignored annotation: /gene="MICA" CDS = 40..109,6950..7204,7479..7766,8354..8632,8732..8869,11421..11548 ignored annotation: /gene="MICA" ignored annotation: /codon_start=1 ignored annotation: /product="MHC class I chain-related protein A" ignored annotation: /db_xref="PID:e221069" ignored annotation: /db_xref="PID:g1405893" translation = MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYDRQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDATQLGFQPLMSALGSTGSTEGA ignored annotation: intron 110..6949 ignored annotation: /gene="MICA" ignored annotation: /number=1 ignored annotation: exon 6950..7204 ignored annotation: /gene="MICA" ignored annotation: /note="extracellular alpha 1 domain" ignored annotation: /number=2 ignored annotation: intron 7205..7478 ignored annotation: /gene="MICA" ignored annotation: /number=2 ignored annotation: exon 7479..7766 ignored annotation: /gene="MICA" ignored annotation: /note="extracellular alpha 2 domain" ignored annotation: /number=3 ignored annotation: intron 7767..8353 ignored annotation: /gene="MICA" ignored annotation: /number=3 ignored annotation: exon 8354..8632 ignored annotation: /gene="MICA" ignored annotation: /note="extracellular alpha 3 domain" ignored annotation: /number=4 ignored annotation: intron 8633..8731 ignored annotation: /gene="MICA" ignored annotation: /number=4 ignored annotation: exon 8732..8869 ignored annotation: /gene="MICA" ignored annotation: /note="transmembrane segment" ignored annotation: /number=5 ignored annotation: intron 8870..11420 ignored annotation: /gene="MICA" ignored annotation: /number=5 ignored annotation: exon 11421..>11722 ignored annotation: /note="cytoplasmic tail" ignored annotation: /number=6 ignored annotation: BASE COUNT 2414 a 2996 c 2828 g 3484 t // ** orig/raws/HSMICAGEN:289: missing "mRNA" entry === HSMOGG === locus = HSMOGG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="ICRFc109A2434" ignored annotation: /clone_lib="ICRF cosmid library" ignored annotation: /chromosome="6" mRNA = 764..1253,3274..3621,10106..10219,11597..11617,11860..11880,14238..14354,14658..14678,15129..16324 ignored annotation: /product="myelin oligodendrocyte glycoprotein" ignored annotation: prim_transcript 764..16324 ignored annotation: exon 764..1253 ignored annotation: /number=1 CDS = 1166..1253,3274..3621,10106..10219,11597..11617,11860..11880,14238..14354,14658..14678,15129..15142 ignored annotation: /codon_start=1 ignored annotation: /product="myelin oligodendrocyte glycoprotein" ignored annotation: /db_xref="PID:g793839" translation = MASLSRPSLPSCLCSFLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGEGKVTLRIRNVRFSDEGGFTCFFRDHSYQEEAAMELKVEDPFYWVSPGVLVLLAVLPVLLLQITLGLVFLCLQYRLRGKLRAEIENLHRTFDPHFLRVPCWKITLFVIVPVLGPLVALIICYNWLHRRLAGQFLEELRNPF ignored annotation: intron 1254..3273 ignored annotation: /number=1 ignored annotation: exon 3274..3621 ignored annotation: /number=2 ignored annotation: intron 3622..10105 ignored annotation: /number=2 ignored annotation: misc_feature 4519..4544 ignored annotation: /note="polymorphic (CA)n" ignored annotation: exon 10106..10219 ignored annotation: /number=3 ignored annotation: intron 10220..11596 ignored annotation: /number=3 ignored annotation: exon 11597..11617 ignored annotation: /number=4 ignored annotation: intron 11618..11859 ignored annotation: /number=4 ignored annotation: exon 11860..11880 ignored annotation: /number=5 ignored annotation: intron 11881..14237 ignored annotation: /number=5 ignored annotation: exon 14238..14354 ignored annotation: /number=6 ignored annotation: intron 14355..14657 ignored annotation: /number=6 ignored annotation: exon 14658..14678 ignored annotation: /number=7 ignored annotation: intron 14679..15128 ignored annotation: /number=7 ignored annotation: exon 15129..16323 ignored annotation: /number=8 ignored annotation: misc_feature 16250..16289 ignored annotation: /note="polymorphic (TAAA)n" ignored annotation: BASE COUNT 4624 a 4120 c 3991 g 4803 t mRNA range 764..1253 mRNA range 3274..3621 mRNA range 10106..10219 mRNA range 11597..11617 mRNA range 11860..11880 mRNA range 14238..14354 mRNA range 14658..14678 mRNA range 15129..16324 CDS range 1166..1253 CDS range 3274..3621 CDS range 10106..10219 CDS range 11597..11617 CDS range 11860..11880 CDS range 14238..14354 CDS range 14658..14678 CDS range 15129..15142 seq_ini = 1 seq_fin = 17538 i = 15142 last codon bas = tc[tga]gtg last codon lab = EF[DEF]YYY === HSMTIXG === locus = HSMTIXG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /clone="lambda 47" ignored annotation: /chromosome="16" ignored annotation: /map="16q13" ignored annotation: TATA_signal 107..112 ignored annotation: prim_transcript 137..>1715 ignored annotation: exon 137..235 ignored annotation: /number=1 mRNA = 137..235,831..896,1624..1715 CDS = 208..235,831..896,1624..1715 ignored annotation: /codon_start=1 ignored annotation: /product="metallothionein IX" ignored annotation: /db_xref="PID:g517351" ignored annotation: /db_xref="SWISS-PROT:P80297" translation = MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCCA ignored annotation: intron 236..830 ignored annotation: /number=1 ignored annotation: exon 831..896 ignored annotation: /number=2 ignored annotation: intron 897..1623 ignored annotation: /number=2 ignored annotation: exon 1624..1715 ignored annotation: /number=3 ignored annotation: polyA_signal 1843..1848 ignored annotation: BASE COUNT 362 a 535 c 488 g 473 t mRNA range 137..235 mRNA range 831..896 mRNA range 1624..1715 CDS range 208..235 CDS range 831..896 CDS range 1624..1715 seq_ini = 1 seq_fin = 1858 i = 1715 last codon bas = cc[tga]tgc last codon lab = EF[DEF]NNN === HSMTS1G === locus = HSMTS1G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda 44" ignored annotation: /tissue_type="spleen" ignored annotation: exon 664..721 ignored annotation: /gene="mts1" ignored annotation: /number=1 ignored annotation: gene 664..2701 ignored annotation: /gene="mts1" ignored annotation: exon 953..1000 ignored annotation: /gene="mts1" ignored annotation: /function="alternative spliced" ignored annotation: /product="exon 1b" ignored annotation: exon 1659..1815 ignored annotation: /gene="mts1" ignored annotation: /number=2 CDS = 1675..1815,2537..2701 ignored annotation: /gene="mts1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g580320" ignored annotation: /db_xref="SWISS-PROT:P26447" translation = MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK ignored annotation: exon 2537..2701 ignored annotation: /gene="mts1" ignored annotation: /number=3 ignored annotation: BASE COUNT 646 a 756 c 852 g 748 t // ** orig/raws/HSMTS1G:118: missing "mRNA" entry === HSMYBPC3 === locus = HSMYBPC3 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /chromosome="11" ignored annotation: /map="p11.2" ignored annotation: exon 1..58 ignored annotation: /number=1 mRNA = 1..58,1174..1440,2059..2172,2561..2659,2750..2898,4178..4295,4812..4860,5036..5065,5237..5290,5687..5689,6072..6089,6346..6509,8199..8331,8561..8563,8678..8802,8888..8993,9079..9245,9667..9832,10579..10685,10791..10820,12032..12171,12418..12498,13137..13296,14021..14125,14236..14424,15668..15802,16470..16637,17668..17756,17926..18121,18346..18485,18706..18865,18977..19113,19421..19607,19797..19833,19961..20662 ignored annotation: gene 34..19807 ignored annotation: /gene="MYBPC3" CDS = 34..58,1174..1440,2059..2172,2561..2659,2750..2898,4178..4295,4812..4860,5036..5065,5237..5290,5687..5689,6072..6089,6346..6509,8199..8331,8561..8563,8678..8802,8888..8993,9079..9245,9667..9832,10579..10685,10791..10820,12032..12171,12418..12498,13137..13296,14021..14125,14236..14424,15668..15802,16470..16637,17668..17756,17926..18121,18346..18485,18706..18865,18977..19113,19421..19607,19797..19807 ignored annotation: /gene="MYBPC3" ignored annotation: /codon_start=1 ignored annotation: /product="myosin binding protein C gene" ignored annotation: /db_xref="PID:e314013" ignored annotation: /db_xref="PID:g2058322" translation = MPEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKVIEAEKAEPMLAPAPAPAEATGAPGEAPAPAAELGESAPSPKGSSSAALNGPTPGAPDDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFECSNFNLTVHEAMGTGDLDLLSAFRRTSLAGGGRRISDSHEDTGILDFSSLLKKRDSFRTPRDSKLEAPAEEDVWEILRQAPPSEYERIAFQYGVTDLRGMLKRLKGMRRDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVKEPPVLITRPLEDQLVMVGQRVEFECEVSEEGAQVKWLKDGVELTREETFKYRFKKDGQRHHLIINEAMLEDAGHYALCTSGGQALAELIVQEKKLEVYQSIADLMVGAKDQAVFKCEVSDENVRGVWLKNGKELVPDSRIKVSHIGRVHKLTIDDVTPADEADYSFVPEGFACNLSAKLHFMEVKIDFVPRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAPKISNVGEDSCTVQWEPPAYDGGQPILGYILERKKKKSYRWMQLNFDLIQELSHEARRMIEGVVYEMRVYAVNAIGMSRPSPASQPFMPIGPPSEPTHLAVEDVSDTTVSLKWRPPERVGAGGLDGYSVEYCPEGCSEWVAALQGLTEHTSILVKDLPTGARLLFRVRAHNMAGPGAPVTTTEPVTVQEILQRPRLQLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTWTKEGQPLAGEEVSIRNSPTDTILFIRAARRVHSGTYQVTVRIENMEDKATLVLQVVDKPSPPQDLRVTDAWGLNVALEWKPPQDVGNTELWGYTVQKADKKTMEWFTVLEHYRRTHCVVPELIIGNGYYFRVFSQNMVGFSDRAATTKEPVFIPRPGITYEPPNYKALDFSEAPSFTQPLVNRSVIAGYTAMLCCAVRGSPKPKISWFKNGLDLGEDARFRMFSKQGVLTLEIRKPCPFDGGIYVCRATNLQGEARCECRLEVRVPQ ignored annotation: exon 1174..1440 ignored annotation: /gene="MYBPC3" ignored annotation: /number=2 ignored annotation: exon 2059..2172 ignored annotation: /gene="MYBPC3" ignored annotation: /number=3 ignored annotation: exon 2561..2659 ignored annotation: /gene="MYBPC3" ignored annotation: /number=4 ignored annotation: exon 2750..2898 ignored annotation: /gene="MYBPC3" ignored annotation: /number=5 ignored annotation: exon 4178..4295 ignored annotation: /gene="MYBPC3" ignored annotation: /number=6 ignored annotation: exon 4812..4860 ignored annotation: /gene="MYBPC3" ignored annotation: /number=7 ignored annotation: exon 5036..5065 ignored annotation: /gene="MYBPC3" ignored annotation: /number=8 ignored annotation: exon 5237..5290 ignored annotation: /gene="MYBPC3" ignored annotation: /number=9 ignored annotation: exon 5687..5689 ignored annotation: /gene="MYBPC3" ignored annotation: /number=10 ignored annotation: exon 6072..6089 ignored annotation: /gene="MYBPC3" ignored annotation: /number=11 ignored annotation: exon 6346..6509 ignored annotation: /gene="MYBPC3" ignored annotation: /number=12 ignored annotation: exon 8199..8331 ignored annotation: /gene="MYBPC3" ignored annotation: /number=13 ignored annotation: exon 8561..8563 ignored annotation: /gene="MYBPC3" ignored annotation: /number=14 ignored annotation: exon 8678..8802 ignored annotation: /gene="MYBPC3" ignored annotation: /number=15 ignored annotation: exon 8888..8993 ignored annotation: /gene="MYBPC3" ignored annotation: /number=16 ignored annotation: exon 9079..9245 ignored annotation: /gene="MYBPC3" ignored annotation: /number=17 ignored annotation: exon 9667..9832 ignored annotation: /gene="MYBPC3" ignored annotation: /number=18 ignored annotation: exon 10579..10685 ignored annotation: /gene="MYBPC3" ignored annotation: /number=19 ignored annotation: exon 10791..10820 ignored annotation: /gene="MYBPC3" ignored annotation: /number=20 ignored annotation: exon 12032..12171 ignored annotation: /gene="MYBPC3" ignored annotation: /number=21 ignored annotation: exon 12418..12498 ignored annotation: /gene="MYBPC3" ignored annotation: /number=22 ignored annotation: exon 13137..13296 ignored annotation: /gene="MYBPC3" ignored annotation: /number=23 ignored annotation: exon 14021..14125 ignored annotation: /gene="MYBPC3" ignored annotation: /number=24 ignored annotation: exon 14236..14424 ignored annotation: /gene="MYBPC3" ignored annotation: /number=25 ignored annotation: exon 15668..15802 ignored annotation: /gene="MYBPC3" ignored annotation: /number=26 ignored annotation: exon 16470..16637 ignored annotation: /gene="MYBPC3" ignored annotation: /number=27 ignored annotation: exon 17668..17756 ignored annotation: /gene="MYBPC3" ignored annotation: /number=28 ignored annotation: exon 17926..18121 ignored annotation: /gene="MYBPC3" ignored annotation: /number=29 ignored annotation: exon 18346..18485 ignored annotation: /gene="MYBPC3" ignored annotation: /number=30 ignored annotation: exon 18706..18865 ignored annotation: /gene="MYBPC3" ignored annotation: /number=31 ignored annotation: exon 18977..19113 ignored annotation: /gene="MYBPC3" ignored annotation: /number=32 ignored annotation: exon 19421..19607 ignored annotation: /gene="MYBPC3" ignored annotation: /number=33 ignored annotation: exon 19797..19833 ignored annotation: /number=34 ignored annotation: exon 19961..20662 ignored annotation: /number=35 ignored annotation: BASE COUNT 4529 a 5783 c 6125 g 4214 t 11 others 7501 agccannnnn nnnnnntggg caacagaggt gctagtggag cgctgggaag gagtacacac ** orig/raws/HSMYBPC3:309: invalid base letter "n" === HSN10C3 === locus = HSN10C3 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /map="22q12" ignored annotation: /clone="N10C3" ignored annotation: /clone_lib="L22NCO3L" ignored annotation: repeat_region 730..767 ignored annotation: /note="19 copies of 2 mer 100 % conserved" ignored annotation: repeat_region 806..1001 ignored annotation: /note="MIR repeat: matches 260..41 of consensus" ignored annotation: repeat_region 1016..1105 ignored annotation: /note="MIR repeat: matches 98..184 of consensus" ignored annotation: repeat_region 1718..1819 ignored annotation: /note="5S repeat: matches 105..1 of consensus" ignored annotation: repeat_region 2241..2520 ignored annotation: /partial ignored annotation: /note="AluSx repeat: matches 1..282 of consensus" ignored annotation: repeat_region 2525..2603 ignored annotation: /partial ignored annotation: /note="AluJo repeat: matches 233..159 of consensus" ignored annotation: repeat_region 2607..2658 ignored annotation: /note="26 copies of 2 mer 98 % conserved" ignored annotation: repeat_region 2678..2813 ignored annotation: /note="FLAM_C repeat: matches 133..3 of consensus" ignored annotation: repeat_region 3278..3514 ignored annotation: /note="MIR repeat: matches 4..260 of consensus" ignored annotation: repeat_region 3953..4046 ignored annotation: /note="L1MA10 repeat: matches 999..909 of consensus" ignored annotation: repeat_region 4072..4230 ignored annotation: /partial ignored annotation: /note="AluJo repeat: matches 300..136 of consensus" ignored annotation: repeat_region 4244..4388 ignored annotation: /note="MIR repeat: matches 149..2 of consensus" ignored annotation: repeat_region 5073..5218 ignored annotation: /note="MIR repeat: matches 148..4 of consensus" ignored annotation: misc_feature 5587..8515 ignored annotation: /note="Putative CpG island" ignored annotation: repeat_region 5789..5830 ignored annotation: /note="6 copies of 7 mer 91 % conserved" ignored annotation: unsure 6440..6511 CDS = 6585..6647,14677..14773,17026..17115,18723..18928,20322..20466,24703..24827 ignored annotation: /codon_start=1 ignored annotation: /product="platelet-derived growth factor B chain (PDGF-B)" ignored annotation: /db_xref="PID:e275137" ignored annotation: /db_xref="PID:g1621242" ignored annotation: /db_xref="SWISS-PROT:P01127" translation = MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA ignored annotation: repeat_region 7242..7337 ignored annotation: /note="48 copies of 2 mer 88 % conserved" ignored annotation: unsure 7548..7554 ignored annotation: /note="single clone" ignored annotation: unsure 7648..7702 ignored annotation: /note="single clone" ignored annotation: repeat_region 11439..11506 ignored annotation: /note="MIR repeat: matches 190..118 of consensus" ignored annotation: repeat_region 11579..11768 ignored annotation: /note="MER20 repeat: matches 218..1 of consensus" ignored annotation: repeat_region 11898..12026 ignored annotation: /note="MIR repeat: matches 46..174 of consensus" ignored annotation: repeat_region 12303..12345 ignored annotation: /note="MIR2 repeat: matches 145..103 of consensus" ignored annotation: repeat_region 16518..16549 ignored annotation: /note="8 copies of 4 mer 88 % conserved" ignored annotation: repeat_region 17345..17483 ignored annotation: /note="MIR repeat: matches 194..51 of consensus" ignored annotation: repeat_region 17763..18057 ignored annotation: /note="AluSc repeat: matches 1..295 of consensus" ignored annotation: repeat_region 18185..18260 ignored annotation: /note="MIR repeat: matches 193..117 of consensus" ignored annotation: repeat_region 18514..18600 ignored annotation: /note="MIR repeat: matches 144..50 of consensus" ignored annotation: repeat_region 21159..21355 ignored annotation: /partial ignored annotation: /note="AluJb repeat: matches 93..292 of consensus" ignored annotation: repeat_region 21656..21943 ignored annotation: /note="AluSx repeat: matches 290..1 of consensus" ignored annotation: repeat_region 21944..22244 ignored annotation: /note="AluJo repeat: matches 296..1 of consensus" ignored annotation: repeat_region 22952..23065 ignored annotation: /note="MIR repeat: matches 110..241 of consensus" ignored annotation: repeat_region 23157..23292 ignored annotation: /partial ignored annotation: /note="AluSq repeat: matches 1..136 of consensus" ignored annotation: repeat_region 23294..23592 ignored annotation: /note="AluSx repeat: matches 3..301 of consensus" ignored annotation: repeat_region 23593..23673 ignored annotation: /note="MIR repeat: matches 131..47 of consensus" ignored annotation: repeat_region 23977..24378 ignored annotation: /note="MLT1G repeat: matches 412..12 of consensus" ignored annotation: repeat_region 24388..24593 ignored annotation: /note="MIR repeat: matches 233..28 of consensus" ignored annotation: misc_feature <25233..26863 ignored annotation: /note="match: STS G06144" ignored annotation: repeat_region 27331..27400 ignored annotation: /note="MIR repeat: matches 46..115 of consensus" ignored annotation: repeat_region 28857..28913 ignored annotation: /note="3 copies of 19 mer 84 % conserved" ignored annotation: repeat_region 29303..29379 ignored annotation: /note="MIR2 repeat: matches 63..141 of consensus" ignored annotation: repeat_region 29647..30222 ignored annotation: /note="144 copies of 4 mer 83 % conserved" ignored annotation: repeat_region 31470..31520 ignored annotation: /note="3 copies of 17 mer 100 % conserved" ignored annotation: repeat_region 31591..32482 ignored annotation: /note="L1PA2 repeat: matches 893..1 of consensus" ignored annotation: repeat_region 32331..33726 ignored annotation: /note="L1 repeat: matches 5390..3981 of consensus" ignored annotation: repeat_region 33823..34117 ignored annotation: /note="AluSq repeat: matches 303..1 of consensus" ignored annotation: repeat_region 35050..35230 ignored annotation: /partial ignored annotation: /note="AluJo repeat: matches 302..121 of consensus" ignored annotation: repeat_region 35270..35392 ignored annotation: /partial ignored annotation: /note="AluJb repeat: matches 122..1 of consensus" ignored annotation: repeat_region 36607..36893 ignored annotation: /note="AluSx repeat: matches 288..1 of consensus" ignored annotation: repeat_region 36950..37244 ignored annotation: /note="AluSx repeat: matches 3..302 of consensus" ignored annotation: repeat_region 37860..38054 ignored annotation: /note="L1MA10 repeat: matches 291..485 of consensus" ignored annotation: repeat_region 38056..38117 ignored annotation: /partial ignored annotation: /note="AluY repeat: matches 1..62 of consensus" ignored annotation: BASE COUNT 7996 a 10576 c 10309 g 9233 t 3 others 9421 cttcttccgg gaaagagtga anngggcccc actgcccttt gccatccagc ttcctctggc ** orig/raws/HSN10C3:321: invalid base letter "n" === HSN44A4 === locus = HSN44A4 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /map="22q11.2-qter" ignored annotation: /clone="N44A4" ignored annotation: /clone_lib="LL22NCO3" ignored annotation: repeat_region 457..751 ignored annotation: /note="AluSx repeat: matches 1..297 of consensus" ignored annotation: repeat_region 1361..1641 ignored annotation: /note="AluY repeat: matches 301..20 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 1699..1872 ignored annotation: /note="AluJo repeat: matches 294..120 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 1884..2184 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 2693..2834 ignored annotation: /note="MIR2 repeat: matches 5..146 of consensus" ignored annotation: repeat_region 3862..4017 ignored annotation: /note="MIR repeat: matches 12..191 of consensus" ignored annotation: repeat_region 4028..4328 ignored annotation: /note="AluJo repeat: matches 2..299 of consensus" ignored annotation: repeat_region 4477..4679 ignored annotation: /note="AluSp repeat: matches 1..203 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 4742..4845 ignored annotation: /note="26 copies of 4 mer 85 % conserved" ignored annotation: repeat_region 5094..5153 ignored annotation: /note="15 copies of 4 mer 93 % conserved" ignored annotation: repeat_region 5159..5202 ignored annotation: /note="MIR2 repeat: matches 75..28 of consensus" ignored annotation: repeat_region 6381..6417 ignored annotation: /note="MIR repeat: matches 114..78 of consensus" ignored annotation: repeat_region 7377..7561 ignored annotation: /note="MIR repeat: matches 216..35 of consensus" ignored annotation: repeat_region 7866..8012 ignored annotation: /note="MIR repeat: matches 236..81 of consensus" ignored annotation: repeat_region 8132..8415 ignored annotation: /note="AluSg repeat: matches 17..300 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 8948..9054 ignored annotation: /note="MIR2 repeat: matches 114..10 of consensus" ignored annotation: repeat_region 9216..9284 ignored annotation: /note="MLT1F repeat: matches 541..467 of consensus" ignored annotation: repeat_region 9344..9634 ignored annotation: /note="MLT1F repeat: matches 372..79 of consensus" ignored annotation: repeat_region 9488..9700 ignored annotation: /note="MLT1G repeat: matches 224..13 of consensus" ignored annotation: repeat_region 9714..9829 ignored annotation: /note="AluSx repeat: matches 2..117 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 10112..10386 ignored annotation: /note="AluJo repeat: matches 273..1 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 10518..10919 ignored annotation: /note="MLT2B repeat: matches 1..404 of consensus" ignored annotation: repeat_region 10926..10969 ignored annotation: /note="22 copies of 2 mer 82 % conserved" ignored annotation: repeat_region 10975..11027 ignored annotation: /note="MLT2B repeat: matches 392..444 of consensus" ignored annotation: repeat_region 11868..12172 ignored annotation: /note="AluSx repeat: matches 1..302 of consensus" ignored annotation: repeat_region 12379..12504 ignored annotation: /note="FLAM_A repeat: matches 131..1 of consensus" ignored annotation: repeat_region 13224..13385 ignored annotation: /note="MIR repeat: matches 191..21 of consensus" ignored annotation: repeat_region 13916..13995 ignored annotation: /note="MIR2 repeat: matches 146..67 of consensus" ignored annotation: repeat_region 14254..14290 ignored annotation: /note="MIR repeat: matches 155..191 of consensus" ignored annotation: repeat_region 14376..14679 ignored annotation: /note="AluJb repeat: matches 1..302 of consensus" ignored annotation: repeat_region 15142..15202 ignored annotation: /note="MIR repeat: matches 71..131 of consensus" ignored annotation: repeat_region 15305..15604 ignored annotation: /note="AluSx repeat: matches 1..301 of consensus" ignored annotation: repeat_region 16028..16148 ignored annotation: /note="MIR repeat: matches 147..21 of consensus" ignored annotation: repeat_region 16580..16721 ignored annotation: /note="MIR repeat: matches 20..163 of consensus" ignored annotation: repeat_region 17527..17602 ignored annotation: /note="MIR repeat: matches 84..160 of consensus" ignored annotation: repeat_region 18447..18531 ignored annotation: /note="MIR repeat: matches 105..192 of consensus" ignored annotation: repeat_region 18590..18887 ignored annotation: /note="AluSp repeat: matches 2..303 of consensus" ignored annotation: repeat_region 19184..19211 ignored annotation: /note="14 copies of 2 mer 89 % conserved" ignored annotation: repeat_region 19342..19629 ignored annotation: /note="AluSq repeat: matches 299..1 of consensus" ignored annotation: repeat_region 19630..19929 ignored annotation: /note="AluSx repeat: matches 296..1 of consensus" ignored annotation: repeat_region 19956..20102 ignored annotation: /note="AluSx repeat: matches 159..302 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 20110..20147 ignored annotation: /note="19 copies of 2 mer 100 % conserved" ignored annotation: repeat_region 20152..20280 ignored annotation: /note="AluJb repeat: matches 130..2 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 20298..20356 ignored annotation: /note="MIR repeat: matches 105..47 of consensus" ignored annotation: repeat_region 20857..20953 ignored annotation: /note="MIR repeat: matches 48..146 of consensus" ignored annotation: repeat_region 20957..21091 ignored annotation: /note="AluSq repeat: matches 1..136 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 21098..21397 ignored annotation: /note="AluSx repeat: matches 1..299 of consensus" ignored annotation: repeat_region 21463..21631 ignored annotation: /note="AluSg repeat: matches 127..294 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 22539..22659 ignored annotation: /note="MIR repeat: matches 2..128 of consensus" ignored annotation: repeat_region 23337..23530 ignored annotation: /note="MIR repeat: matches 49..246 of consensus" ignored annotation: misc_feature 23633..24891 ignored annotation: /note="Putative CpG island" ignored annotation: prim_transcript <24259..>37289 ignored annotation: /note="match: multiple ESTs; match: W65437 R56892 N79982 ignored annotation: R82499 D54224; match: W97815 C03366 W91698 N21530 F04963; ignored annotation: match: H25337 N20527 N71711 H67636 H21979; match: T11718 ignored annotation: W61343 W41264 W47608 W75482; match: F08031 H23204 W16498 ignored annotation: W46459 W46595; match: W85826 W85827 W46596 W59944 H11706; ignored annotation: match: D82630 C21397 D54950 N90630 T28031; match: N31547 ignored annotation: N29226 H82692 H79624 N69107; match: R25364 H69844 W94022 ignored annotation: W33751 R84813; match: W47413 R74851 R69901 N99662 W65436" ignored annotation: repeat_region 24265..24299 ignored annotation: /note="5 copies of 7 mer 89 % conserved" CDS = 24419..24505,35825..36478 ignored annotation: /codon_start=1 ignored annotation: /product="14-3-3 protein" ignored annotation: /db_xref="PID:e311853" ignored annotation: /db_xref="PID:g1941923" translation = MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEAGEGN ignored annotation: repeat_region 25470..25585 ignored annotation: /note="MER5A repeat: matches 74..189 of consensus" ignored annotation: repeat_region 28075..28360 ignored annotation: /note="AluJo repeat: matches 300..1 of consensus" ignored annotation: repeat_region 28825..29127 ignored annotation: /note="AluSp repeat: matches 303..3 of consensus" ignored annotation: repeat_region 29187..29337 ignored annotation: /note="AluYa5 repeat: matches 296..146 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 29371..29497 ignored annotation: /note="MIR repeat: matches 163..10 of consensus" ignored annotation: repeat_region 29763..29800 ignored annotation: /note="19 copies of 2 mer 100 % conserved" ignored annotation: repeat_region 30587..30879 ignored annotation: /note="AluSx repeat: matches 296..1 of consensus" ignored annotation: repeat_region 30906..30939 ignored annotation: /note="17 copies of 2 mer 88 % conserved" ignored annotation: repeat_region 33090..33190 ignored annotation: /note="U13 repeat: matches 1..102 of consensus" ignored annotation: repeat_region 34177..34626 ignored annotation: /note="MLT1C repeat: matches 464..8 of consensus" ignored annotation: repeat_region 35131..35427 ignored annotation: /note="AluSc repeat: matches 299..1 of consensus" ignored annotation: repeat_region 37956..38255 ignored annotation: /note="AluSx repeat: matches 302..1 of consensus" ignored annotation: repeat_region 38566..38689 ignored annotation: /note="AluJb repeat: matches 127..266 of consensus; ignored annotation: incomplete repeat" ignored annotation: repeat_region 38751..38774 ignored annotation: /note="12 copies of 2 mer 96 % conserved" ignored annotation: repeat_region 38801..39099 ignored annotation: /note="AluSq repeat: matches 299..1 of consensus" ignored annotation: repeat_region 39180..39247 ignored annotation: /note="MIR repeat: matches 144..73 of consensus" ignored annotation: unsure 39430..39497 ignored annotation: /note="single clone area" ignored annotation: repeat_region 39470..39768 ignored annotation: /note="AluSq repeat: matches 1..300 of consensus" ignored annotation: unsure 40029 ignored annotation: /note="uncertain base" ignored annotation: repeat_region 40208..40490 ignored annotation: /note="AluSp repeat: matches 1..283 of consensus; ignored annotation: incomplete repeat" ignored annotation: BASE COUNT 10205 a 9485 c 10000 g 10972 t // ** orig/raws/HSN44A4:909: missing "mRNA" entry === HSNCAMX1 === locus = HSNCAMX1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="B5" ignored annotation: /clone_lib="cosmid" ignored annotation: /chromosome="X" CDS = 1533..1608,4127..4141,4672..4777,5015..5217,6192..6314,6411..6581,6871..6982,7131..7315,7437..7568,7708..7851,8417..8528,8642..8808,8911..9067,9248..9372,9460..9570,9817..10014,10246..10316,10499..10721,11551..11666,11870..12071,12160..12282,12376..12549,12666..12785,12893..13048,13352..13486,13820..13892,13990..14001,14475..14706 ignored annotation: /codon_start=1 ignored annotation: /product="neural cell adhesion molecule L1" ignored annotation: /db_xref="PID:g472989" ignored annotation: /db_xref="SWISS-PROT:P32004" translation = MVVALRYVWPLLLCSPCLLIQIPEEYEGHHVMEPPVITEQSPRRLVVFPTDDISLKCEASGKPEVQFRWTRDGVHFKPKEELGVTVYQSPHSGSFTITGNNSNFAQRFQGIYRCFASNKLGTAMSHEIRLMAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIKQDERVTMGQNGNLYFANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTVEAAPYWLHKPQSHLYGPGETARLDCQVQGRPQPEVTWRINGIPVEELAKDQKYRIQRGALILSNVQPSDTMVTQCEARNRHGLLLANAYIYVVQLPAKILTADNQTYMAVQGSTAYLLCKAFGAPVPSVQWLDEDGTTVLQDERFFPYANGTLGIRDLQANDTGRYFCLAANDQNNVTIMANLKVKDATQITQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRGDGRDLQELGDSDKYFIEDGRLVIHSLDYSDQGNYSCVASTELDVVESRAQLLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDIEFEDKEMAPEKWYSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGPGEPSPVSETVVTPEAAPEKNPVDVKGEGNETTNMVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSDPFLVVSNTSTFVPYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRHIHKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFTFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLRDPELRTHNLTDLSPHLRYRFQLQATTKEGPGEAIVREGGTMALSGISDFGNISATAGENYSVVSWVPKEGQCNFRFHILFKALGEEKGGASLSPQYVSYNQSSYTQWDLQPDTDYEIHLFKERMFRHQMAVKTNGTGRVRLPPAGFATEGWFIGFVSAIILLLLVLLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGNDSSGATSPINPAVALE ignored annotation: exon 1533..1608 ignored annotation: /number=1 ignored annotation: /label=ex1 ignored annotation: prim_transcript <1533..>14706 ignored annotation: intron 1609..4126 ignored annotation: exon 4127..4141 ignored annotation: /number=2 ignored annotation: /label=ex2 ignored annotation: intron 4142..4671 ignored annotation: exon 4672..4777 ignored annotation: /number=3 ignored annotation: /label=ex3 ignored annotation: intron 4778..5014 ignored annotation: exon 5015..5217 ignored annotation: /number=4 ignored annotation: /label=ex4 ignored annotation: intron 5218..6191 ignored annotation: exon 6192..6314 ignored annotation: /number=5 ignored annotation: /label=ex5 ignored annotation: intron 6315..6410 ignored annotation: exon 6411..6581 ignored annotation: /number=6 ignored annotation: /label=ex6 ignored annotation: intron 6582..6870 ignored annotation: exon 6871..6982 ignored annotation: /number=7 ignored annotation: /label=ex7 ignored annotation: intron 6983..7130 ignored annotation: exon 7131..7315 ignored annotation: /number=8 ignored annotation: /label=ex8 ignored annotation: intron 7316..7436 ignored annotation: exon 7437..7568 ignored annotation: /number=9 ignored annotation: /label=ex9 ignored annotation: intron 7569..7707 ignored annotation: exon 7708..7851 ignored annotation: /number=10 ignored annotation: /label=ex10 ignored annotation: intron 7852..8416 ignored annotation: exon 8417..8528 ignored annotation: /number=11 ignored annotation: /label=ex11 ignored annotation: intron 8529..8641 ignored annotation: exon 8642..8808 ignored annotation: /number=12 ignored annotation: /label=ex12 ignored annotation: intron 8809..8910 ignored annotation: exon 8911..9067 ignored annotation: /number=13 ignored annotation: /label=ex13 ignored annotation: intron 9068..9247 ignored annotation: exon 9248..9372 ignored annotation: /number=14 ignored annotation: /label=ex14 ignored annotation: intron 9373..9459 ignored annotation: exon 9460..9570 ignored annotation: /number=15 ignored annotation: /label=ex15 ignored annotation: intron 9571..9816 ignored annotation: exon 9817..10014 ignored annotation: /number=16 ignored annotation: /label=ex16 ignored annotation: intron 10015..10245 ignored annotation: exon 10246..10316 ignored annotation: /number=17 ignored annotation: /label=ex17 ignored annotation: intron 10317..10498 ignored annotation: exon 10499..10721 ignored annotation: /number=18 ignored annotation: /label=ex18 ignored annotation: intron 10722..11550 ignored annotation: exon 11551..11666 ignored annotation: /number=19 ignored annotation: /label=ex19 ignored annotation: intron 11667..11869 ignored annotation: exon 11870..12071 ignored annotation: /number=20 ignored annotation: /label=ex20 ignored annotation: intron 12072..12159 ignored annotation: exon 12160..12282 ignored annotation: /number=21 ignored annotation: /label=ex21 ignored annotation: intron 12283..12375 ignored annotation: exon 12376..12549 ignored annotation: /number=22 ignored annotation: /label=ex22 ignored annotation: intron 12550..12665 ignored annotation: exon 12666..12785 ignored annotation: /number=23 ignored annotation: /label=ex23 ignored annotation: intron 12786..12892 ignored annotation: exon 12893..13048 ignored annotation: /number=24 ignored annotation: /label=ex24 ignored annotation: intron 13049..13351 ignored annotation: exon 13352..13486 ignored annotation: /number=25 ignored annotation: /label=ex25 ignored annotation: intron 13487..13819 ignored annotation: exon 13820..13892 ignored annotation: /number=26 ignored annotation: /label=ex26 ignored annotation: intron 13893..13989 ignored annotation: exon 13990..14001 ignored annotation: /number=27 ignored annotation: /label=ex27 ignored annotation: intron 14002..14474 ignored annotation: exon 14475..14706 ignored annotation: /number=28 ignored annotation: /label=ex28 ignored annotation: BASE COUNT 3053 a 5067 c 4630 g 3538 t // ** orig/raws/HSNCAMX1:448: missing "mRNA" entry === HSNFLG === locus = HSNFLG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="pHNFL" ignored annotation: misc_binding 164..173 ignored annotation: /bound_moiety="sp1" ignored annotation: CAAT_signal 239..246 ignored annotation: /note="putative" ignored annotation: TATA_signal 273..278 ignored annotation: /note="putative" ignored annotation: exon 300..1442 ignored annotation: /note="putative" ignored annotation: /number=1 CDS = 396..1442,2625..2749,3135..3454,3978..4120 ignored annotation: /codon_start=1 ignored annotation: /product="NF-L" ignored annotation: /db_xref="PID:e259346" ignored annotation: /db_xref="PID:g1279504" translation = MSSFSYEPYYSTSYKRRYVETPRVHISVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATTNEKQALRGEREEGLEETLRNLQARYEEEVLSREDAEGRLMERRKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQAQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQSSQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQTEVEETIEASKAEEAKDEPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKEEEEGGEGEEGEETKEAEEEEKKVEGAGEEQAAKKKD ignored annotation: intron 1443..2624 ignored annotation: /number=1 ignored annotation: exon 2625..2749 ignored annotation: /number=2 ignored annotation: intron 2750..3134 ignored annotation: /number=2 ignored annotation: exon 3135..3454 ignored annotation: /number=3 ignored annotation: intron 3455..3977 ignored annotation: /number=3 ignored annotation: exon 3977..>4407 ignored annotation: /number=4 ignored annotation: polyA_signal 4407..4415 ignored annotation: BASE COUNT 1288 a 1047 c 1180 g 1167 t // ** orig/raws/HSNFLG:153: missing "mRNA" entry === HSNFM === locus = HSNFM ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="lambda gt11" ignored annotation: TATA_signal 678..683 ignored annotation: exon <742..1821 ignored annotation: /number=1 mRNA = <742..1821,2550..2674,4006..6038 ignored annotation: /product="NF-M" CDS = 742..1821,2550..2674,4006..5551 ignored annotation: /codon_start=1 ignored annotation: /product="NF-M" ignored annotation: /db_xref="PID:g35046" ignored annotation: /db_xref="SWISS-PROT:P07197" translation = MSYTLDSLGNPSAYRRVTETRSSFSRVSGSPSSGFRSQSWSRGSPSTVSSSYKRSMLAPRLAYSSAMLSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTFAGSITGPLYTHRPPITISSKIQKTKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAASMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNGEVEGKEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEKVVVTKTVEKITSEGGDGATKYITKSVTVTQKVEEHEETFEEKLVSTKKVEKVTSHAIVKEVTQSD ignored annotation: intron 1822..2549 ignored annotation: /number=1 ignored annotation: exon 2550..2674 ignored annotation: /number=2 ignored annotation: intron 2675..4005 ignored annotation: /number=2 ignored annotation: exon 4006..6038 ignored annotation: /number=3 ignored annotation: polyA_signal 5849..5854 ignored annotation: polyA_signal 6015..6020 ignored annotation: polyA_site 6038 ignored annotation: /note="polyA site" ignored annotation: BASE COUNT 1851 a 1317 c 1779 g 1289 t mRNA range 742..1821 mRNA range 2550..2674 mRNA range 4006..6038 CDS range 742..1821 CDS range 2550..2674 CDS range 4006..5551 seq_ini = 1 seq_fin = 6236 i = 5551 last codon bas = ac[taa]gat last codon lab = EF[DEF]YYY === HSNGALGEN === locus = HSNGALGEN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: TATA_signal 1663..1669 ignored annotation: exon 1696..1902 ignored annotation: /number=1 ignored annotation: misc_feature 1696 ignored annotation: /note="CAP-site" ignored annotation: prim_transcript 1696..5691 ignored annotation: gene 1765..5358 ignored annotation: /gene="NGAL" CDS = 1765..1902,2476..2612,3877..3956,4145..4264,4422..4523,5339..5358 ignored annotation: /gene="NGAL" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e256056" ignored annotation: /db_xref="PID:g1657331" ignored annotation: /db_xref="SWISS-PROT:P80188" translation = MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKYLGLPENHIVFPVPIDQCIDG ignored annotation: intron 1903..2475 ignored annotation: /gene="NGAL" ignored annotation: /number=1 ignored annotation: exon 2476..2612 ignored annotation: /gene="NGAL" ignored annotation: /number=2 ignored annotation: intron 2613..3876 ignored annotation: /gene="NGAL" ignored annotation: /number=2 ignored annotation: exon 3877..3956 ignored annotation: /gene="NGAL" ignored annotation: /number=3 ignored annotation: intron 3957..4144 ignored annotation: /gene="NGAL" ignored annotation: /number=3 ignored annotation: exon 4145..4264 ignored annotation: /gene="NGAL" ignored annotation: /number=4 ignored annotation: intron 4265..4421 ignored annotation: /gene="NGAL" ignored annotation: /number=4 ignored annotation: exon 4422..4523 ignored annotation: /gene="NGAL" ignored annotation: /number=5 ignored annotation: intron 4524..5338 ignored annotation: /gene="NGAL" ignored annotation: /number=5 ignored annotation: exon 5339..5365 ignored annotation: /number=6 ignored annotation: intron 5366..5549 ignored annotation: /number=6 ignored annotation: exon 5550..5691 ignored annotation: /number=7 ignored annotation: polyA_signal 5673..5678 ignored annotation: BASE COUNT 1207 a 1782 c 1766 g 1114 t // ** orig/raws/HSNGALGEN:180: missing "mRNA" entry === HSODCG === locus = HSODCG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="blood" ignored annotation: /cell_type="CML cells." ignored annotation: TATA_signal 763..767 mRNA = 795..1001,3858..3967,4073..4191,4475..4648,4855..5027,5286..5420,5551..5632,5809..5892,6948..7110,7193..7305,7399..7613,8254..8740 ignored annotation: prim_transcript 795..8740 ignored annotation: exon 795..1001 ignored annotation: /number=1 ignored annotation: intron 1002..3857 ignored annotation: /number=1 ignored annotation: misc_feature 2682..2980 ignored annotation: /note="Alu repeat I" ignored annotation: misc_feature 3211..3477 ignored annotation: /note="Alu repeat II" ignored annotation: exon 3858..3967 ignored annotation: /number=2 ignored annotation: intron 3968..4072 ignored annotation: /number=2 ignored annotation: exon 4073..4191 ignored annotation: /number=3 CDS = 4090..4191,4475..4648,4855..5027,5286..5420,5551..5632,5809..5892,6948..7110,7193..7305,7399..7613,8254..8398 ignored annotation: /EC_number="4.1.1.17" ignored annotation: /codon_start=1 ignored annotation: /product="ornithine decarboxylase (ODC)" ignored annotation: /db_xref="PID:g296667" ignored annotation: /db_xref="SWISS-PROT:P11926" translation = MNNFGNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFPPEVEEQDASTLPVSCAWESGMKRHRAACASASINV ignored annotation: intron 4192..4474 ignored annotation: /number=3 ignored annotation: exon 4475..4648 ignored annotation: /number=4 ignored annotation: intron 4649..4854 ignored annotation: /number=4 ignored annotation: exon 4855..5027 ignored annotation: /number=5 ignored annotation: intron 5028..5285 ignored annotation: /number=5 ignored annotation: exon 5286..5420 ignored annotation: /number=6 ignored annotation: intron 5421..5550 ignored annotation: /number=6 ignored annotation: exon 5551..5632 ignored annotation: /number=7 ignored annotation: intron 5633..5808 ignored annotation: /number=7 ignored annotation: exon 5809..5892 ignored annotation: /number=8 ignored annotation: intron 5893..6947 ignored annotation: /number=8 ignored annotation: misc_feature 6123..6410 ignored annotation: /note="Alu repeat III" ignored annotation: exon 6948..7110 ignored annotation: /number=9 ignored annotation: intron 7111..7192 ignored annotation: /number=9 ignored annotation: exon 7193..7305 ignored annotation: /number=10 ignored annotation: intron 7306..7398 ignored annotation: /number=10 ignored annotation: exon 7399..7613 ignored annotation: /number=11 ignored annotation: intron 7614..8253 ignored annotation: /number=11 ignored annotation: exon 8254..8740 ignored annotation: /number=12 ignored annotation: BASE COUNT 2280 a 1970 c 2372 g 2421 t mRNA range 795..1001 mRNA range 3858..3967 mRNA range 4073..4191 mRNA range 4475..4648 mRNA range 4855..5027 mRNA range 5286..5420 mRNA range 5551..5632 mRNA range 5809..5892 mRNA range 6948..7110 mRNA range 7193..7305 mRNA range 7399..7613 mRNA range 8254..8740 CDS range 4090..4191 CDS range 4475..4648 CDS range 4855..5027 CDS range 5286..5420 CDS range 5551..5632 CDS range 5809..5892 CDS range 6948..7110 CDS range 7193..7305 CDS range 7399..7613 CDS range 8254..8398 seq_ini = 1 seq_fin = 9043 i = 8398 last codon bas = tg[tag]ata last codon lab = EF[DEF]YYY === HSODF2 === locus = HSODF2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="8" ignored annotation: /map="8q22" ignored annotation: gene 280..1275 ignored annotation: /gene="ODF2 (allele 2)" ignored annotation: exon 280..599 ignored annotation: /gene="ODF2 (allele 2)" ignored annotation: /number=1 CDS = 280..599,843..1275 ignored annotation: /gene="ODF2 (allele 2)" ignored annotation: /codon_start=1 ignored annotation: /product="outer dense fiber protein" ignored annotation: /db_xref="PID:g474426" translation = MAALSCLLDSVRRDIKKVDRELRQLRCIDEFSTRCLCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYPCCLCDYKLYCLRPSLRSLERKAIRAIEDEKRELAKLRRTTNRILASSCCSSNILGSVNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSCVKIESPCYPCTSPCSPCSPCNPCNPCSPCNPCSPYDPCNPCYPCGSRFSCRKMIL ignored annotation: intron 600..842 ignored annotation: /gene="ODF2 (allele 2)" ignored annotation: /number=1 ignored annotation: exon 843..1275 ignored annotation: /gene="ODF2 (allele 2)" ignored annotation: /number=2 ignored annotation: polyA_signal 1390..1395 ignored annotation: BASE COUNT 394 a 315 c 332 g 389 t // ** orig/raws/HSODF2:76: missing "mRNA" entry === HSP53G === locus = HSP53G ignored annotation: /organism="Homo sapiens" ignored annotation: /strain="caucasian" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="p13" mRNA = 843..949,11689..11790,11906..11927,12021..12299,13055..13238,13320..13432,14000..14109,14452..14588,14681..14754,17572..17678,18599..19876 ignored annotation: /gene="p53" ignored annotation: prim_transcript 843..19876 ignored annotation: /gene="p53" ignored annotation: exon 843..949 ignored annotation: /gene="p53" ignored annotation: /number=1 ignored annotation: gene 843..19876 ignored annotation: /gene="p53" ignored annotation: intron 950..11688 ignored annotation: /gene="p53" ignored annotation: /number=1 ignored annotation: repeat_unit 2581..2587 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 2588..2877 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 2890..2896 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 3915..3929 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 3950..4223 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 4224..4238 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 4319..4327 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 4328..4603 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 4631..4639 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 4786..5574 ignored annotation: /gene="p53" ignored annotation: /note="rearranged cluster" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 5802..5811 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 5812..6100 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 6127..6136 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 6221..6236 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 6237..6517 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 6531..6546 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 6548..7812 ignored annotation: /gene="p53" ignored annotation: /note="rearranged cluster" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 8703..8982 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 9087..9098 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 9099..9377 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 9391..9402 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 9513..10332 ignored annotation: /gene="p53" ignored annotation: /note="rearranged cluster" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 11065..11069 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 11070..11357 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 11374..11378 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: exon 11689..11790 ignored annotation: /gene="p53" ignored annotation: /number=2 CDS = 11717..11790,11906..11927,12021..12299,13055..13238,13320..13432,14000..14109,14452..14588,14681..14754,17572..17678,18599..18680 ignored annotation: /gene="p53" ignored annotation: /codon_start=1 ignored annotation: /product="protein p53" ignored annotation: /db_xref="PID:g35214" translation = MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD ignored annotation: intron 11791..11905 ignored annotation: /gene="p53" ignored annotation: /number=2 ignored annotation: exon 11906..11927 ignored annotation: /gene="p53" ignored annotation: /number=3 ignored annotation: intron 11928..12020 ignored annotation: /gene="p53" ignored annotation: /number=3 ignored annotation: exon 12021..12299 ignored annotation: /gene="p53" ignored annotation: /number=4 ignored annotation: intron 12300..13054 ignored annotation: /gene="p53" ignored annotation: /number=4 ignored annotation: repeat_unit 12588..12597 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 12598..12882 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 12901..12910 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: exon 13055..13238 ignored annotation: /gene="p53" ignored annotation: /number=5 ignored annotation: intron 13239..13319 ignored annotation: /gene="p53" ignored annotation: /number=5 ignored annotation: exon 13320..13432 ignored annotation: /gene="p53" ignored annotation: /number=6 ignored annotation: intron 13433..13999 ignored annotation: /gene="p53" ignored annotation: /number=6 ignored annotation: repeat_unit 13617..13630 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 13631..13913 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 13930..13943 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: exon 14000..14109 ignored annotation: /gene="p53" ignored annotation: /number=7 ignored annotation: intron 14110..14451 ignored annotation: /gene="p53" ignored annotation: /number=7 ignored annotation: exon 14452..14588 ignored annotation: /gene="p53" ignored annotation: /number=8 ignored annotation: intron 14589..14680 ignored annotation: /gene="p53" ignored annotation: /number=8 ignored annotation: exon 14681..14754 ignored annotation: /gene="p53" ignored annotation: /number=9 ignored annotation: intron 14755..17571 ignored annotation: /gene="p53" ignored annotation: /number=9 ignored annotation: repeat_unit 15171..16491 ignored annotation: /gene="p53" ignored annotation: /note="rearranged cluster" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 16633..17397 ignored annotation: /gene="p53" ignored annotation: /note="rearranged cluster" ignored annotation: /rpt_family="ALU" ignored annotation: exon 17572..17678 ignored annotation: /gene="p53" ignored annotation: /number=10 ignored annotation: intron 17679..18598 ignored annotation: /gene="p53" ignored annotation: /number=10 ignored annotation: repeat_unit 18076..18091 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: repeat_unit 18092..18371 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 18389..18404 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: exon 18599..19876 ignored annotation: /gene="p53" ignored annotation: /number=11 ignored annotation: repeat_unit 19424..19431 ignored annotation: /gene="p53" ignored annotation: /note="3' ALU-flanking" ignored annotation: repeat_unit 19431..19752 ignored annotation: /gene="p53" ignored annotation: /rpt_family="ALU" ignored annotation: repeat_unit 19753..19760 ignored annotation: /gene="p53" ignored annotation: /note="5'-ALU flanking" ignored annotation: BASE COUNT 5246 a 4970 c 5107 g 4980 t mRNA range 843..949 mRNA range 11689..11790 mRNA range 11906..11927 mRNA range 12021..12299 mRNA range 13055..13238 mRNA range 13320..13432 mRNA range 14000..14109 mRNA range 14452..14588 mRNA range 14681..14754 mRNA range 17572..17678 mRNA range 18599..19876 CDS range 11717..11790 CDS range 11906..11927 CDS range 12021..12299 CDS range 13055..13238 CDS range 13320..13432 CDS range 14000..14109 CDS range 14452..14588 CDS range 14681..14754 CDS range 17572..17678 CDS range 18599..18680 seq_ini = 1 seq_fin = 20303 i = 18680 last codon bas = ac[tga]cat last codon lab = EF[DEF]YYY === HSPACAP === locus = HSPACAP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: intron <1..7538 ignored annotation: /number=1 ignored annotation: exon 7539..7649 ignored annotation: /number=2 CDS = 7540..7649,9813..9944,10420..10518,11601..11790 ignored annotation: /codon_start=1 ignored annotation: /product="PACAP precursor" ignored annotation: /db_xref="PID:e214691" ignored annotation: /db_xref="PID:g1132550" translation = MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFGGSEPPGAGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL ignored annotation: sig_peptide 7540..7611 ignored annotation: intron 7650..9812 ignored annotation: /number=2 ignored annotation: exon 9813..9944 ignored annotation: /number=3 ignored annotation: intron 9945..10419 ignored annotation: /number=3 ignored annotation: exon 10420..10518 ignored annotation: /number=4 ignored annotation: mat_peptide 10421..10507 ignored annotation: /product="PRP" ignored annotation: intron 10519..11600 ignored annotation: /number=4 ignored annotation: exon 11601..13197 ignored annotation: /number=5 ignored annotation: mat_peptide 11653..11769 ignored annotation: /product="PACAP" ignored annotation: polyA_signal 13177..13182 ignored annotation: BASE COUNT 4465 a 3817 c 4125 g 4634 t // ** orig/raws/HSPACAP:350: missing "mRNA" entry === HSPAT133 === locus = HSPAT133 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="lambda fix" ignored annotation: /chromosome="2" ignored annotation: /map="2p13" ignored annotation: TATA_signal 1050..1056 ignored annotation: exon 1080..1446 ignored annotation: /gene="pAT133" ignored annotation: /number=1 mRNA = 1080..1446,1847..3690 ignored annotation: /gene="pAT133" ignored annotation: prim_transcript 1080..3690 ignored annotation: /gene="pAT133" ignored annotation: gene 1080..3690 ignored annotation: /gene="pAT133" CDS = 1311..1446,1847..3171 ignored annotation: /gene="pAT133" ignored annotation: /codon_start=1 ignored annotation: /product="zinc finger protein" ignored annotation: /db_xref="PID:g38424" ignored annotation: /db_xref="SWISS-PROT:Q05215" translation = MLHLSEFSEPDALLVKSTEGCCAEPSAELPRLPARDAPAATGYPGAGDFLSWALNSCGASGDLADSCFLEGPAPTPPPGLSYSGSFFIQAVPEHPHDPEALFNLMSGVLGLAPFPGPEAAASRSPLDAPFPAGSDALLPGPPDLYSPDLGAAPFPEAFWEASPCAGAPSQCLYEPQLSPPDVKPGLRRPPASPALDAVSAFKGPYAPWELLSVGAPGNCGSQGDYQAAPEARFPVIGTKIEDLLSISCPAELPAVPANRLYPSGAYDAFPLAPGDLGEGAEGLPGLLTPPSGEGGSSGDGGEFLASTQPQLSPLGLRSAAAADFPKPLVADIPGSSGVAAPPVPPPPPTPFPQAKARRKGRRGGKCSTRCFCPRPHAKAFACPVESCVRSFARSDELNRHLRIHTGHKPFQCRICLRNFSRSDHLTSHVRTHTGEKPFACDVCGRRFARSDEKKRHSKVHLKQKARAEERLKGLGFYSLGLSFASL ignored annotation: intron 1447..1846 ignored annotation: /gene="pAT133" ignored annotation: /number=1 ignored annotation: exon 1847..3690 ignored annotation: /gene="pAT133" ignored annotation: /number=2 ignored annotation: polyA_signal 3671..3677 ignored annotation: /gene="pAT133" ignored annotation: BASE COUNT 724 a 1165 c 1063 g 768 t mRNA range 1080..1446 mRNA range 1847..3690 CDS range 1311..1446 CDS range 1847..3171 seq_ini = 1 seq_fin = 3720 i = 3171 last codon bas = tc[tga]gca last codon lab = EF[DEF]YYY === HSPCK1 === locus = HSPCK1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="14" ignored annotation: /cell_type="lymphocyte" ignored annotation: /map="q11.2-12/14" mRNA = <1..73,2527..2772,3835..4019,4107..4310,4680..4867,5187..5349,5625..5843,8381..8518,8788..8883,9138..9733 ignored annotation: /gene="PCK1" ignored annotation: gene 1..9733 ignored annotation: /gene="PCK1" ignored annotation: exon <1..73 ignored annotation: /gene="PCK1" ignored annotation: /number=1 CDS = 45..73,2527..2772,3835..4019,4107..4310,4680..4867,5187..5349,5625..5843,8381..8518,8788..8883,9138..9592 ignored annotation: /gene="PCK1" ignored annotation: /EC_number="4.1.1.32" ignored annotation: /codon_start=1 ignored annotation: /product="phosphoenolpyruvate carboxykinase (GTP)" ignored annotation: /db_xref="PID:e1198354" ignored annotation: /db_xref="PID:g2661752" translation = MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGIHICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHVPDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKALCAAAFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSATTNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPGDKEPCAHPNSRFCAPARQCPIMDPAWEAPEGVPIDAIIFGGRRPKGVPLVYEAFNWRHGVFVGRAMRSESTAAAEHKGKIIMHDPFAMRPFFGYNFGHYLEHWLSMEGRKGAQLPRIFHVNWFRRDEAGHFLWPGFGENARVLDWICRRLEGEDSARETPIGLVPKEGALDLSGLRAIDTTQLFSLPKDFWEQEVRDIRSYLTEQVNQDLPKEVLAELEALERRVHKM ignored annotation: intron 74..2526 ignored annotation: /gene="PCK1" ignored annotation: /number=1 ignored annotation: exon 2527..2772 ignored annotation: /gene="PCK1" ignored annotation: /number=2 ignored annotation: intron 2773..3834 ignored annotation: /gene="PCK1" ignored annotation: /number=2 ignored annotation: exon 3835..4019 ignored annotation: /gene="PCK1" ignored annotation: /number=3 ignored annotation: intron 4020..4106 ignored annotation: /gene="PCK1" ignored annotation: /number=3 ignored annotation: exon 4107..4310 ignored annotation: /gene="PCK1" ignored annotation: /number=4 ignored annotation: intron 4311..4679 ignored annotation: /gene="PCK1" ignored annotation: /number=4 ignored annotation: exon 4680..4867 ignored annotation: /gene="PCK1" ignored annotation: /number=5 ignored annotation: intron 4868..5186 ignored annotation: /gene="PCK1" ignored annotation: /number=5 ignored annotation: exon 5187..5349 ignored annotation: /gene="PCK1" ignored annotation: /number=6 ignored annotation: intron 5350..5624 ignored annotation: /gene="PCK1" ignored annotation: /number=6 ignored annotation: exon 5625..5843 ignored annotation: /gene="PCK1" ignored annotation: /number=7 ignored annotation: intron 5844..8380 ignored annotation: /gene="PCK1" ignored annotation: /number=7 ignored annotation: exon 8381..8518 ignored annotation: /gene="PCK1" ignored annotation: /number=8 ignored annotation: intron 8519..8787 ignored annotation: /gene="PCK1" ignored annotation: /number=8 ignored annotation: exon 8788..8883 ignored annotation: /gene="PCK1" ignored annotation: /number=9 ignored annotation: intron 8884..9137 ignored annotation: /gene="PCK1" ignored annotation: /number=9 ignored annotation: exon 9138..9592 ignored annotation: /gene="PCK1" ignored annotation: /number=10 ignored annotation: BASE COUNT 2337 a 2849 c 2494 g 2367 t mRNA range 1..73 mRNA range 2527..2772 mRNA range 3835..4019 mRNA range 4107..4310 mRNA range 4680..4867 mRNA range 5187..5349 mRNA range 5625..5843 mRNA range 8381..8518 mRNA range 8788..8883 mRNA range 9138..9733 CDS range 45..73 CDS range 2527..2772 CDS range 3835..4019 CDS range 4107..4310 CDS range 4680..4867 CDS range 5187..5349 CDS range 5625..5843 CDS range 8381..8518 CDS range 8788..8883 CDS range 9138..9592 seq_ini = 1 seq_fin = 10047 i = 9592 last codon bas = tg[tga]cct last codon lab = EF[DEF]YYY === HSPEX === locus = HSPEX ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="X" ignored annotation: /map="p22.1" ignored annotation: repeat_region complement(365..507) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(1650..1952) ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region 2529..2601 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 2605..2906 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 2913..2982 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(2983..3286) ignored annotation: /rpt_family="AluJb" ignored annotation: repeat_region 3288..3349 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(4041..4866) ignored annotation: /rpt_family="LTR1" ignored annotation: repeat_region 4981..5086 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 5589..5674 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(6876..7150) ignored annotation: /rpt_family="AluSc" ignored annotation: repeat_region 7355..7652 ignored annotation: /rpt_family="AluJb" ignored annotation: repeat_region complement(8133..8321) ignored annotation: /rpt_family="L1MA1" ignored annotation: repeat_region complement(9030..9289) ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region complement(9289..9584) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(9612..9905) ignored annotation: /rpt_family="AluSg" ignored annotation: repeat_region complement(10721..11023) ignored annotation: /rpt_family="AluSx" ignored annotation: gene 12024..226970 ignored annotation: /gene="PEX" ignored annotation: exon <12024..12141 ignored annotation: /gene="PEX" ignored annotation: /number=1 CDS = 12024..12141,17487..17555,26068..26229,55406..55492,56494..56720,69447..69515,73001..73117,75973..76056,78024..78169,90485..90578,93476..93604,112540..112641,147329..147406,157290..157393,169461..169519,191921..191975,198053..198120,200630..200760,205460..205525,206524..206628,224350..224426,226868..226970 ignored annotation: /gene="PEX" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e290125" ignored annotation: /db_xref="PID:g1834505" translation = MEAETGSSVETGKKANRGTRIALVVFVGGTLVLGTILFLVSQGLLSLQAKQEYCLKPECIEAAAAILSKVNLSVDPCDNFFRFACDGWISNNPIPEDMPSYGVYPWLRHNVDLKLKELLEKSISRRRDTEAIQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLESNIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSPDDKASNEHILKLDQATLSLAVREDYLDNSTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISELSAMIPQFDWLGYIKKVIDTRLYPHLKDISPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVDVYFQEDKKEMMEELVEGVRWAFIDMLEKENEWMDAGTKRKAKEKARAVLAKVGYPEFIMNDTHVNEDLKAIKFSEADYFGNVLQTRKYLAQSDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSTESEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLREAFRAYRKWINDRRQGLEEPLLPGITFTNNQLFFLSYAHVRCNSYRPEAAREQVQIGAHSPPQFRVNGAISNFEEFQKAFNCPPNSTMNRGMDSCRLW ignored annotation: intron 12142..17486 ignored annotation: /gene="PEX" ignored annotation: /number=1 ignored annotation: repeat_region 13717..13859 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(15076..15377) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 15834..16134 ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region complement(17060..17238) ignored annotation: /rpt_family="MER5A" ignored annotation: exon 17487..17555 ignored annotation: /gene="PEX" ignored annotation: /number=2 ignored annotation: intron 17556..26067 ignored annotation: /gene="PEX" ignored annotation: /number=2 ignored annotation: repeat_region complement(17995..18285) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 18803..18971 ignored annotation: /rpt_family="AluSp" ignored annotation: repeat_region complement(19264..19325) ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region 19380..19497 ignored annotation: /rpt_family="FLAM_A" ignored annotation: repeat_region complement(20326..20512) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 21362..21517 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 21521..21852 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(22406..22593) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 23448..23748 ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region complement(23882..24014) ignored annotation: /rpt_family="AluJb" ignored annotation: repeat_region complement(25271..25417) ignored annotation: /rpt_family="MLT1G" ignored annotation: repeat_region complement(25583..25884) ignored annotation: /rpt_family="AluSx" ignored annotation: exon 26068..26229 ignored annotation: /gene="PEX" ignored annotation: /number=3 ignored annotation: intron 26230..55405 ignored annotation: /gene="PEX" ignored annotation: /number=3 ignored annotation: repeat_region complement(28133..28431) ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region complement(28436..28545) ignored annotation: /rpt_family="L1PA7" ignored annotation: repeat_region 28609..28894 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 29314..29608 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 30268..30566 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region complement(30597..30731) ignored annotation: /rpt_family="MER42" ignored annotation: repeat_region complement(30598..30700) ignored annotation: /rpt_family="MER42" ignored annotation: repeat_region complement(31244..31545) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 31650..31756 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 31766..31970 ignored annotation: /rpt_family="L1PB2" ignored annotation: repeat_region 31983..32111 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(33150..33452) ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 33910..34212 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 34252..34396 ignored annotation: /rpt_family="L1MA4A" ignored annotation: repeat_region complement(34582..34875) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 35537..35719 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 35720..35798 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 35904..36229 ignored annotation: /rpt_family="MER33" ignored annotation: repeat_region 36340..36626 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 36744..36868 ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region 37224..37289 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 37395..37432 ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region complement(37824..38122) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 39028..39190 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region complement(40658..40750) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(40796..40849) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(40850..41184) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region complement(41209..41261) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region complement(41264..41297) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(41324..41628) ignored annotation: /rpt_family="MER33" ignored annotation: repeat_region complement(41649..41773) ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region complement(41779..42077) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(43164..43558) ignored annotation: /rpt_family="L1PA15" ignored annotation: repeat_region complement(43553..43610) ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(44448..44741) ignored annotation: /rpt_family="AluSc" ignored annotation: repeat_region 45980..46279 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region 46696..46842 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(46845..47155) ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 47156..47206 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 47629..47745 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 47867..48168 ignored annotation: /rpt_family="AluS" ignored annotation: repeat_region 49416..49708 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region 50836..50962 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 50963..51264 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 51268..51448 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 51631..51738 ignored annotation: /rpt_family="L1ME3" ignored annotation: repeat_region complement(52266..52495) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(52661..52955) ignored annotation: /rpt_family="AluSg" ignored annotation: repeat_region 53815..54109 ignored annotation: /rpt_family="AluSx" ignored annotation: exon 55406..55492 ignored annotation: /gene="PEX" ignored annotation: /number=4 ignored annotation: intron 55493..56493 ignored annotation: /gene="PEX" ignored annotation: /number=4 ignored annotation: exon 56494..56720 ignored annotation: /gene="PEX" ignored annotation: /number=5 ignored annotation: intron 56721..69446 ignored annotation: /gene="PEX" ignored annotation: /number=5 ignored annotation: repeat_region 58823..58976 ignored annotation: /rpt_family="MER42c" ignored annotation: repeat_region complement(61147..61236) ignored annotation: /rpt_family="L1MA4" ignored annotation: repeat_region complement(61230..61626) ignored annotation: /rpt_family="L1PA3" ignored annotation: repeat_region complement(61477..61801) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 61796..62288 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(62287..62685) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(62695..63148) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(63180..63303) ignored annotation: /rpt_family="FLAM_A" ignored annotation: repeat_region complement(63318..64306) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 64311..64611 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region complement(64612..65016) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(66917..67180) ignored annotation: /rpt_family="L1ME1" ignored annotation: repeat_region complement(67129..67719) ignored annotation: /rpt_family="L1MD2" ignored annotation: repeat_region complement(67572..68043) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(68044..68339) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(68437..68733) ignored annotation: /rpt_family="AluSq" ignored annotation: exon 69447..69515 ignored annotation: /gene="PEX" ignored annotation: /number=6 ignored annotation: intron 69516..73000 ignored annotation: /gene="PEX" ignored annotation: /number=6 ignored annotation: repeat_region 69868..70005 ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region complement(70738..71092) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region complement(71391..71690) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(71766..72067) ignored annotation: /rpt_family="AluSg" ignored annotation: repeat_region complement(72094..72164) ignored annotation: /rpt_family="MIR2" ignored annotation: exon 73001..73117 ignored annotation: /gene="PEX" ignored annotation: /number=7 ignored annotation: intron 73118..75972 ignored annotation: /gene="PEX" ignored annotation: /number=7 ignored annotation: exon 75973..76056 ignored annotation: /gene="PEX" ignored annotation: /number=8 ignored annotation: intron 76057..78023 ignored annotation: /gene="PEX" ignored annotation: /number=8 ignored annotation: repeat_region complement(76785..77074) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 77523..77833 ignored annotation: /rpt_family="AluSx" ignored annotation: exon 78024..78169 ignored annotation: /gene="PEX" ignored annotation: /number=9 ignored annotation: intron 78170..90484 ignored annotation: /gene="PEX" ignored annotation: /number=9 ignored annotation: repeat_region 79205..79357 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 79908..80213 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(80981..81514) ignored annotation: /rpt_family="L1MA2" ignored annotation: repeat_region complement(81986..82106) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(82333..83179) ignored annotation: /rpt_family="L1PB2" ignored annotation: repeat_region 84127..84225 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(84236..84282) ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region complement(84352..84534) ignored annotation: /rpt_family="MER" ignored annotation: repeat_region 84692..84799 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 84840..84954 ignored annotation: /rpt_family="MER46" ignored annotation: repeat_region 85507..85814 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region complement(85916..86065) ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region 86086..86185 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 86858..86922 ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region 87342..87533 ignored annotation: /rpt_family="L1PB2" ignored annotation: repeat_region 87687..87977 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(88939..89053) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(89156..89423) ignored annotation: /rpt_family="MER6" ignored annotation: repeat_region complement(89483..89632) ignored annotation: /rpt_family="L1PA5" ignored annotation: repeat_region 89630..89797 ignored annotation: /rpt_family="L1PA4" ignored annotation: repeat_region complement(89808..90153) ignored annotation: /rpt_family="MER6" ignored annotation: exon 90485..90578 ignored annotation: /gene="PEX" ignored annotation: /number=10 ignored annotation: intron 90579..93475 ignored annotation: /gene="PEX" ignored annotation: /number=10 ignored annotation: repeat_region complement(91165..91297) ignored annotation: /rpt_family="FLAM_A" ignored annotation: repeat_region 91643..91939 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(92966..93267) ignored annotation: /rpt_family="AluSx" ignored annotation: exon 93476..93604 ignored annotation: /gene="PEX" ignored annotation: /number=11 ignored annotation: intron 93605..112539 ignored annotation: /gene="PEX" ignored annotation: /number=11 ignored annotation: repeat_region complement(94004..94063) ignored annotation: /rpt_family="L1MA9" ignored annotation: repeat_region 94064..94362 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(94363..95337) ignored annotation: /rpt_family="L1MA9" ignored annotation: repeat_region complement(95730..96357) ignored annotation: /rpt_family="PABL" ignored annotation: repeat_region 97163..97200 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(97221..97313) ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(98085..98167) ignored annotation: /rpt_family="AluSg" ignored annotation: repeat_region complement(98609..98914) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(99106..99319) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(100144..100401) ignored annotation: /rpt_family="MER3" ignored annotation: repeat_region complement(102006..102296) ignored annotation: /rpt_family="AluJ" ignored annotation: repeat_region 102399..102522 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(102847..103147) ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region complement(105887..106188) ignored annotation: /rpt_family="AluS" ignored annotation: repeat_region complement(107074..107379) ignored annotation: /rpt_family="AluS" ignored annotation: repeat_region 107831..108388 ignored annotation: /rpt_family="MER44B" ignored annotation: repeat_region 109275..109585 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 109801..109886 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 109906..110030 ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region complement(110057..110356) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 110359..110418 ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region complement(111116..111424) ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region complement(111898..112201) ignored annotation: /rpt_family="AluJb" ignored annotation: repeat_region complement(112202..112337) ignored annotation: /rpt_family="AluJb" ignored annotation: exon 112540..112641 ignored annotation: /gene="PEX" ignored annotation: /number=12 ignored annotation: intron 112642..147328 ignored annotation: /gene="PEX" ignored annotation: /number=12 ignored annotation: repeat_region 113326..113629 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(113768..113921) ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 116630..116793 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 118017..118252 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(118496..118649) ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region complement(118653..118847) ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region complement(118967..119143) ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(119497..119797) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(119872..120081) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 120082..120266 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 120986..121286 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(122139..122200) ignored annotation: /rpt_family="L1MB5" ignored annotation: repeat_region 122185..122456 ignored annotation: /rpt_family="L1MA4A" ignored annotation: repeat_region complement(122459..122771) ignored annotation: /rpt_family="L1MB5" ignored annotation: repeat_region 123043..123196 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(124022..124170) ignored annotation: /rpt_family="MER42c" ignored annotation: repeat_region 124208..124342 ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region 124346..124649 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 124654..124693 ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region complement(124955..125138) ignored annotation: /rpt_family="MER42c" ignored annotation: repeat_region 125554..125853 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(127031..127203) ignored annotation: /rpt_family="MLT1F" ignored annotation: repeat_region complement(127370..127783) ignored annotation: /rpt_family="L1MA7" ignored annotation: repeat_region complement(127642..127844) ignored annotation: /rpt_family="L1ME1" ignored annotation: repeat_region 128482..128786 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region complement(129169..129214) ignored annotation: /rpt_family="MER5B" ignored annotation: repeat_region 129260..129293 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(129288..129392) ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 131173..131352 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 131596..131916 ignored annotation: /rpt_family="L1ME3" ignored annotation: repeat_region complement(132011..132300) ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region 133167..133204 ignored annotation: /rpt_family="L1MA1" ignored annotation: repeat_region 133457..133672 ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region 133694..133796 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(133945..134228) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(134260..134303) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 135040..135172 ignored annotation: /rpt_family="MER34" ignored annotation: repeat_region complement(135890..136198) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 136228..136357 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 138386..138537 ignored annotation: /rpt_family="BC200" ignored annotation: repeat_region complement(138889..138940) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(139100..139283) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region 139284..139586 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region complement(139597..139789) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region 139870..140163 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 140279..140458 ignored annotation: /rpt_family="AluSg" ignored annotation: repeat_region 141969..142168 ignored annotation: /rpt_family="MER20" ignored annotation: repeat_region complement(142451..142489) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(145548..146498) ignored annotation: /rpt_family="L1MA8" ignored annotation: repeat_region complement(146507..146811) ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region complement(146812..146973) ignored annotation: /rpt_family="L1" ignored annotation: exon 147329..147406 ignored annotation: /gene="PEX" ignored annotation: /number=13 ignored annotation: intron 147407..157289 ignored annotation: /gene="PEX" ignored annotation: /number=13 ignored annotation: repeat_region complement(148431..148610) ignored annotation: /rpt_family="IR" ignored annotation: repeat_region 148747..148968 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 149348..149600 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(150094..150450) ignored annotation: /rpt_family="THE1C" ignored annotation: repeat_region 152518..152597 ignored annotation: /rpt_family="MADE1" ignored annotation: repeat_region complement(154366..154667) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 155128..155420 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(155812..155917) ignored annotation: /rpt_family="L1ME3A" ignored annotation: exon 157290..157393 ignored annotation: /gene="PEX" ignored annotation: /number=14 ignored annotation: intron 157394..169460 ignored annotation: /gene="PEX" ignored annotation: /number=15 ignored annotation: repeat_region complement(157998..158115) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(158348..158689) ignored annotation: /rpt_family="L1PB1" ignored annotation: repeat_region complement(159507..160447) ignored annotation: /rpt_family="L1MA3" ignored annotation: repeat_region complement(160412..161364) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(164655..164764) ignored annotation: /rpt_family="MLT1F" ignored annotation: repeat_region complement(164774..165072) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(165079..165135) ignored annotation: /rpt_family="MLT1F" ignored annotation: repeat_region complement(165303..165460) ignored annotation: /rpt_family="MLT1G" ignored annotation: repeat_region complement(166064..166342) ignored annotation: /rpt_family="MLT1E" ignored annotation: repeat_region complement(166379..166653) ignored annotation: /rpt_family="MLT1D" ignored annotation: repeat_region 166956..167065 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(167299..167373) ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region complement(167635..168370) ignored annotation: /rpt_family="L1MA3" ignored annotation: repeat_region 168473..168606 ignored annotation: /rpt_family="AluSq" ignored annotation: exon 169461..169519 ignored annotation: /gene="PEX" ignored annotation: /number=15 ignored annotation: intron 169520..191920 ignored annotation: /gene="PEX" ignored annotation: /number=15 ignored annotation: repeat_region complement(170036..170344) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 170365..170515 ignored annotation: /rpt_family="L1ME1" ignored annotation: repeat_region 170549..170730 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 170754..170926 ignored annotation: /rpt_family="L1ME1" ignored annotation: repeat_region complement(172516..172966) ignored annotation: /rpt_family="L1ME3" ignored annotation: repeat_region 174329..174628 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 174678..174908 ignored annotation: /rpt_family="L1ME3" ignored annotation: repeat_region 174912..175210 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region 176286..176760 ignored annotation: /rpt_family="MLT1F" ignored annotation: repeat_region 176824..177015 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 177258..177351 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(177815..178177) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region complement(178388..178888) ignored annotation: /rpt_family="MER44C" ignored annotation: repeat_region complement(178910..178988) ignored annotation: /rpt_family="MER44A" ignored annotation: repeat_region complement(179084..179261) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 179344..179643 ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(180194..180499) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(181257..181526) ignored annotation: /rpt_family="L1ME3" ignored annotation: repeat_region 181873..182044 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(182944..183108) ignored annotation: /rpt_family="ER5B" ignored annotation: repeat_region complement(183178..183279) ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region complement(185372..185512) ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region complement(186762..186904) ignored annotation: /rpt_family="MER33" ignored annotation: repeat_region complement(186915..187082) ignored annotation: /rpt_family="L1PA6" ignored annotation: repeat_region complement(187432..187554) ignored annotation: /rpt_family="L1MB6" ignored annotation: repeat_region 187585..187765 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 190230..190285 ignored annotation: /rpt_family="MER45" ignored annotation: repeat_region complement(190706..191059) ignored annotation: /rpt_family="THE1B" ignored annotation: repeat_region 191487..191601 ignored annotation: /rpt_family="MER45" ignored annotation: exon 191921..191975 ignored annotation: /gene="PEX" ignored annotation: /number=16 ignored annotation: intron 191976..198052 ignored annotation: /gene="PEX" ignored annotation: /number=16 ignored annotation: repeat_region complement(193014..193499) ignored annotation: /rpt_family="MLT1D" ignored annotation: repeat_region complement(194702..194786) ignored annotation: /rpt_family="L1MA2" ignored annotation: repeat_region complement(195534..195836) ignored annotation: /rpt_family="AluSp" ignored annotation: repeat_region complement(197243..197380) ignored annotation: /rpt_family="MLT1G" ignored annotation: exon 198053..198120 ignored annotation: /gene="PEX" ignored annotation: /number=17 ignored annotation: intron 198121..200629 ignored annotation: /gene="PEX" ignored annotation: /number=17 ignored annotation: repeat_region 198197..198295 ignored annotation: /rpt_family="U4B" ignored annotation: repeat_region complement(198635..198933) ignored annotation: /rpt_family="AluSc" ignored annotation: repeat_region 199644..199720 ignored annotation: /rpt_family="MIR2" ignored annotation: exon 200630..200760 ignored annotation: /gene="PEX" ignored annotation: /number=18 ignored annotation: intron 200761..205459 ignored annotation: /gene="PEX" ignored annotation: /number=18 ignored annotation: repeat_region 200835..200950 ignored annotation: /rpt_family="MER5A" ignored annotation: repeat_region 201376..201599 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region 202480..202764 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region 202871..202928 ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(203012..203299) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region complement(203900..204340) ignored annotation: /rpt_family="MLT1D" ignored annotation: repeat_region 203970..203994 ignored annotation: /rpt_type=TANDEM ignored annotation: repeat_region complement(204411..204476) ignored annotation: /rpt_family="MLT1D" ignored annotation: exon 205460..205525 ignored annotation: /gene="PEX" ignored annotation: /number=19 ignored annotation: intron 205526..206523 ignored annotation: /gene="PEX" ignored annotation: /number=19 ignored annotation: exon 206524..206628 ignored annotation: /gene="PEX" ignored annotation: /number=20 ignored annotation: intron 206629..224349 ignored annotation: /gene="PEX" ignored annotation: /number=20 ignored annotation: repeat_region complement(207758..208657) ignored annotation: /rpt_family="L1PA7" ignored annotation: repeat_region complement(208513..213376) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(213455..213688) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(213997..214317) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(214377..214731) ignored annotation: /rpt_family="MLT1A1" ignored annotation: repeat_region 217032..217158 ignored annotation: /rpt_family="AluSq" ignored annotation: repeat_region 217160..217736 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 217837..222706 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 222562..223454 ignored annotation: /rpt_family="L1PA2" ignored annotation: repeat_region 223457..223640 ignored annotation: /rpt_family="AluSx" ignored annotation: exon 224350..224426 ignored annotation: /gene="PEX" ignored annotation: /number=21 ignored annotation: intron 224427..226867 ignored annotation: /gene="PEX" ignored annotation: /number=21 ignored annotation: repeat_region 226281..226588 ignored annotation: /rpt_family="L1ME3" ignored annotation: exon 226868..>226970 ignored annotation: /gene="PEX" ignored annotation: /number=22 ignored annotation: repeat_region 231337..231636 ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region complement(233426..233550) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(233820..234020) ignored annotation: /rpt_family="MIR" ignored annotation: repeat_region complement(234303..234767) ignored annotation: /rpt_family="L1MA8" ignored annotation: repeat_region complement(234769..235068) ignored annotation: /rpt_family="AluY" ignored annotation: repeat_region complement(235069..235405) ignored annotation: /rpt_family="L1MA4A" ignored annotation: repeat_region 236866..237176 ignored annotation: /rpt_family="AluJo" ignored annotation: repeat_region 237215..237287 ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region complement(237290..237429) ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region complement(238181..238479) ignored annotation: /rpt_family="AluSx" ignored annotation: repeat_region 238979..239277 ignored annotation: /rpt_family="AluJb" ignored annotation: repeat_region 239402..239886 ignored annotation: /rpt_family="L1PA7" ignored annotation: repeat_region 240417..241212 ignored annotation: /rpt_family="L1ME3A" ignored annotation: BASE COUNT 68803 a 47704 c 50274 g 76044 t // ** orig/raws/HSPEX:4842: missing "mRNA" entry === HSPLAPL === locus = HSPLAPL ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="sperm cells" ignored annotation: /clone_lib="EMBL3" CDS = 336..402,482..598,711..826,1017..1250 ignored annotation: /codon_start=1 ignored annotation: /product="PLAP-like protein" ignored annotation: /db_xref="PID:g35510" ignored annotation: /db_xref="SWISS-PROT:P10696" translation = MQGPWVLLLLGLRLQLSLGIIPVEEENPDFWNRQAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPETFLAMDRFPYVALSKTYSVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKRGDVGPRVGSGPGDRPLSHI ignored annotation: exon <336..402 ignored annotation: /number=1 ignored annotation: intron 403..481 ignored annotation: /number=1 ignored annotation: exon 482..598 ignored annotation: /number=2 ignored annotation: intron 599..710 ignored annotation: /number=2 ignored annotation: exon 711..826 ignored annotation: /number=3 ignored annotation: intron 827..1016 ignored annotation: /number=3 ignored annotation: exon 1017..>1250 ignored annotation: /number=4 ignored annotation: BASE COUNT 272 a 401 c 377 g 232 t // ** orig/raws/HSPLAPL:74: missing "mRNA" entry === HSPNMTB === locus = HSPNMTB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /clone_lib="ghPNMT1101" ignored annotation: /chromosome="17" ignored annotation: misc_feature 814..829 ignored annotation: /note="pot. glucocorticoid response element" ignored annotation: misc_feature 998..1012 ignored annotation: /note="pot. glucocorticoid response element" ignored annotation: protein_bind 1027..1037 ignored annotation: /note="pot. Sp1 binding site" ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1395..1404 ignored annotation: /note="pot. Sp1 binding site" ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1407..1416 ignored annotation: /note="pot. Sp1 binding site" ignored annotation: /bound_moiety="Sp1" ignored annotation: TATA_signal 1640..1648 ignored annotation: exon 1670..1894 ignored annotation: /number=1 mRNA = 1670..1894,2846..3053,3168..3688 CDS = 1693..1894,2846..3053,3168..3606 ignored annotation: /EC_number="2.1.1.28" ignored annotation: /codon_start=1 ignored annotation: /product="phenylethanolamine n-methyltransferase" ignored annotation: /db_xref="PID:g296668" ignored annotation: /db_xref="SWISS-PROT:P11086" translation = MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL ignored annotation: intron 1895..2845 ignored annotation: /number=1 ignored annotation: misc_feature 2243..2597 ignored annotation: /note="Alu sequence" ignored annotation: misc_feature 2392..2406 ignored annotation: /note="pot. glucocorticoid response element" ignored annotation: exon 2846..3053 ignored annotation: /number=2 ignored annotation: intron 3054..3167 ignored annotation: /number=2 mRNA 3168..3688 ** orig/raws/HSPNMTB:70: more than one "mRNA" entry === HSPPTII === locus = HSPPTII ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon <1..234 ignored annotation: /number=1 CDS = 127..234,598..773,2918..2990 ignored annotation: /EC_number="5.3.2.1" ignored annotation: /codon_start=1 ignored annotation: /product="phenylpyruvate tautomerase II" ignored annotation: /db_xref="PID:e311354" ignored annotation: /db_xref="PID:g2104581" translation = MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL ignored annotation: intron 235..597 ignored annotation: /number=1 ignored annotation: exon 598..773 ignored annotation: /number=2 ignored annotation: intron 774..2917 ignored annotation: /number=2 ignored annotation: exon 2918..>3173 ignored annotation: /number=3 ignored annotation: BASE COUNT 698 a 832 c 843 g 773 t 27 others 1021 cacccccggg gcantgcaag ggtcatgtgg gattgtctgt gtgctgtacc tgccttggca ** orig/raws/HSPPTII:61: invalid base letter "n" === HSPR264SC === locus = HSPR264SC ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="normal fibroblasts" ignored annotation: /clone_lib="genomic" ignored annotation: /clone="E830" ignored annotation: /chromosome="17" ignored annotation: /map="q25" ignored annotation: gene 961..2216 ignored annotation: /gene="PR264/SC35" ignored annotation: CAAT_signal 961..964 ignored annotation: /gene="PR264/SC35" ignored annotation: TATA_signal 1014..1019 ignored annotation: /gene="PR264/SC35" mRNA = 1108..1578,1913..2223,2502..2605,3204..4233 ignored annotation: /gene="HPR4" ignored annotation: gene 1108..4233 ignored annotation: /gene="HPR4" mRNA join(1114..1578,1913..2223,2502..2605,3204..4245) ** orig/raws/HSPR264SC:41: more than one "mRNA" entry === HSPRG1 === locus = HSPRG1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="818-4" ignored annotation: promoter 1..562 ignored annotation: /gene="PRG1" ignored annotation: gene 1..1864 ignored annotation: /gene="PRG1" mRNA = 563..801,914..1864 ignored annotation: /gene="PRG1" ignored annotation: exon 563..801 ignored annotation: /gene="PRG1" ignored annotation: /number=1 CDS = 592..801,914..1174 ignored annotation: /gene="PRG1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e350480" ignored annotation: /db_xref="PID:g2440073" translation = MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAEEGVPAPLPPEDAPNAASLAPTPVSPVLEPFNLTSEPSDYALDLSTFLQQHPAAF ignored annotation: intron 802..913 ignored annotation: /gene="PRG1" ignored annotation: /number=1 ignored annotation: exon 914..1864 ignored annotation: /gene="PRG1" ignored annotation: /number=2 ignored annotation: BASE COUNT 395 a 571 c 519 g 379 t mRNA range 563..801 mRNA range 914..1864 CDS range 592..801 CDS range 914..1174 seq_ini = 1 seq_fin = 1864 i = 1174 last codon bas = tc[taa]ctg last codon lab = EF[DEF]YYY === HSPROPG === locus = HSPROPG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="GM1416B (PLUS ?)" ignored annotation: /clone_lib="COS4X PLUS ?" ignored annotation: /clone="COS4XP, G3" ignored annotation: /chromosome="X" ignored annotation: /map="Xp11.23-Xp11.3" ignored annotation: repeat_unit complement(26..86) ignored annotation: /rpt_family="ALU-like" ignored annotation: repeat_unit 491..777 ignored annotation: /rpt_family="ALU-like" ignored annotation: repeat_unit 1053..1343 ignored annotation: /rpt_family="ALU-like" ignored annotation: exon 1745..1921 ignored annotation: /number=1 mRNA = 1745..1921,2141..2281,2376..2526,3774..3949,4410..4580,4719..4910,5105..5278,5532..5723,5882..5993,7610..>7824 ignored annotation: /note="alternative" mRNA join(1749..1921,2141..2281,2376..2526,3774..3949, ** orig/raws/HSPROPG:43: more than one "mRNA" entry === HSPSAG === locus = HSPSAG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphoid cell line GM 607" ignored annotation: TATA_signal 332..338 ignored annotation: misc_feature 355..365 ignored annotation: /note="transcriptional start region" ignored annotation: exon <401..446 ignored annotation: /number=1 mRNA = <401..446,1688..1847,3477..3763,3907..4043,5413..>5568 CDS = 401..446,1688..1847,3477..3763,3907..4043,5413..5568 ignored annotation: /codon_start=1 ignored annotation: /product="prostate specific antigen (PSA)" ignored annotation: /db_xref="PID:g296671" ignored annotation: /db_xref="SWISS-PROT:P07288" translation = MWVPVVFLTLSVTWIGAAPLILSRIVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVANP ignored annotation: sig_peptide join(401..446,1688..1713) ignored annotation: intron 447..1687 ignored annotation: /number=1 ignored annotation: exon 1688..1847 ignored annotation: /number=2 ignored annotation: mat_peptide join(1714..1847,3477..3763,3907..4043,5413..5565) ignored annotation: /product="prostate specific antigen (PSA)" ignored annotation: intron 1848..3476 ignored annotation: /number=2 ignored annotation: misc_feature 2311..2663 ignored annotation: /note="Alu repetitive sequence" ignored annotation: exon 3477..3763 ignored annotation: /number=3 ignored annotation: intron 3764..3906 ignored annotation: /number=3 ignored annotation: exon 3907..4043 ignored annotation: /number=4 ignored annotation: intron 4044..5412 ignored annotation: /number=4 ignored annotation: exon 5413..>5568 ignored annotation: /number=5 ignored annotation: BASE COUNT 1186 a 1778 c 1503 g 1406 t mRNA range 401..446 mRNA range 1688..1847 mRNA range 3477..3763 mRNA range 3907..4043 mRNA range 5413..5568 CDS range 401..446 CDS range 1688..1847 CDS range 3477..3763 CDS range 3907..4043 CDS range 5413..5568 seq_ini = 1 seq_fin = 5873 i = 5568 last codon bas = cc[tga]gca last codon lab = EF[DEF]NNN === HSPXFGEN === locus = HSPXFGEN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /cell_type="leucocyte" ignored annotation: /clone_lib="EMBL3" ignored annotation: /clone="lambdaL15" ignored annotation: /map="q22" ignored annotation: repeat_region 342..621 ignored annotation: /note="Alu repetitive element" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 1832..2118 ignored annotation: /note="Alu repetitive element" ignored annotation: /rpt_family="Alu" ignored annotation: misc_binding 2477..2482 ignored annotation: /note="putative Sp1 binding site" ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 2491..2496 ignored annotation: /note="putative Sp1 binding site" ignored annotation: /bound_moiety="Sp1" ignored annotation: exon 2543..2622 ignored annotation: /number=1 ignored annotation: gene 2553..8116 ignored annotation: /gene="PxF" CDS = 2553..2622,4032..4141,4561..4726,5168..5253,5470..5631,7421..7597,7822..7866,8033..8116 ignored annotation: /gene="PxF" ignored annotation: /codon_start=1 ignored annotation: /product="PxF protein" ignored annotation: /db_xref="PID:e286546" ignored annotation: /db_xref="PID:g2570023" translation = MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM ignored annotation: exon 4032..4141 ignored annotation: /gene="PxF" ignored annotation: /number=2 ignored annotation: exon 4561..4726 ignored annotation: /gene="PxF" ignored annotation: /number=3 ignored annotation: exon 5168..5253 ignored annotation: /gene="PxF" ignored annotation: /number=4 ignored annotation: exon 5470..5631 ignored annotation: /gene="PxF" ignored annotation: /number=5 ignored annotation: repeat_region 5965..6245 ignored annotation: /note="Alu repetitive element" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 6370..6646 ignored annotation: /note="Alu repetitive element" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 6849..7133 ignored annotation: /note="Alu repetitive element" ignored annotation: /rpt_family="Alu" ignored annotation: exon 7421..7597 ignored annotation: /gene="PxF" ignored annotation: /number=6 ignored annotation: exon 7822..7866 ignored annotation: /gene="PxF" ignored annotation: /number=7 ignored annotation: exon 8033..>11069 ignored annotation: /number=8 ignored annotation: misc_feature 8084 ignored annotation: /gene="PxF" ignored annotation: /note="cryptic 3' splice site (exon 8)" ignored annotation: polyA_signal 9177..9182 ignored annotation: polyA_signal 9438..9443 ignored annotation: polyA_signal 10774..10779 ignored annotation: polyA_signal 10820..10825 ignored annotation: polyA_signal 10832..10837 ignored annotation: BASE COUNT 2987 a 2377 c 2656 g 3049 t // ** orig/raws/HSPXFGEN:284: missing "mRNA" entry === HSQC8B6 === locus = HSQC8B6 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="X" ignored annotation: /map="Xq28" ignored annotation: /clone="QC8B6" ignored annotation: misc_feature 1..5586 ignored annotation: /note="match: S44029 red visual pigment 5' region" ignored annotation: repeat_region 2966..3145 ignored annotation: /note="MER12 element fragment" ignored annotation: repeat_region 2979..3143 ignored annotation: /note="MER12 element fragment" ignored annotation: repeat_region 2981..3145 ignored annotation: /note="MER12 element fragment" ignored annotation: repeat_region 3242..3322 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 3351..3592 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 255..1 of consensus" ignored annotation: repeat_region 3613..3802 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 3961..4223 ignored annotation: /note="L1 element fragment" CDS = 5584..5695,11954..12250,14239..14407,15875..16040,17595..17834,20117..20227 ignored annotation: /codon_start=1 ignored annotation: /product="Red Opsin" ignored annotation: /db_xref="PID:e213786" ignored annotation: /db_xref="PID:g1122284" translation = MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISIVNQVSGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAKLAIVGIAFSWIWSAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLFGKKVDDGSELSSASKTEVSSVSSVSPA ignored annotation: repeat_region 6483..6789 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 7924..8231 ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 9271..9459 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 24..228 of consensus" ignored annotation: repeat_region 9460..9547 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 210..298 of consensus" ignored annotation: repeat_region 9550..9869 ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 10223..10538 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 10545..10876 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 11104..11204 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 102..1 of consensus" ignored annotation: repeat_region 11224..11295 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 222..151 of consensus" ignored annotation: repeat_region 13563..13851 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 15267..15564 ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: misc_feature 18720..18928 ignored annotation: /note="Match: STS HSSWX140" ignored annotation: misc_feature 18721..18867 ignored annotation: /note="Match: STS HSSWX141" ignored annotation: BASE COUNT 4876 a 5936 c 5574 g 5094 t // ** orig/raws/HSQC8B6:445: missing "mRNA" entry === HSRA36 === locus = HSRA36 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="16" ignored annotation: /map="16p13.3" ignored annotation: /clone="RA36" ignored annotation: /clone_lib="CV007K" ignored annotation: misc_feature 1059..1914 ignored annotation: /note="putative CpG island" ignored annotation: repeat_region 3758..4068 ignored annotation: /note="LTR7 element fragment" ignored annotation: misc_feature 6490..7672 ignored annotation: /note="putative CpG island" CDS = 8333..8371,8465..8740,12092..12296,14441..14817 ignored annotation: /codon_start=1 ignored annotation: /product="3-methyl-adenine DNA glycosylase" ignored annotation: /db_xref="PID:e224269" ignored annotation: /db_xref="PID:g1212953" translation = MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA ignored annotation: repeat_region 8507..8590 ignored annotation: /note="2 copies of 42 mer 98 % conserved" ignored annotation: repeat_region 9569..9858 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 10586..11326 ignored annotation: /note="13 copies of 57 mer 91 % conserved" ignored annotation: repeat_region 12499..12790 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: misc_feature 13296..13639 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: misc_feature 14841..15914 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: repeat_region 16280..16576 ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 16582..16667 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..223 of consensus" ignored annotation: repeat_region 16688..16908 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 237..1 of consensus" ignored annotation: repeat_region 17269..17437 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 144..308 of consensus" ignored annotation: misc_feature 17737..17929 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: misc_feature 18752..18943 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: repeat_region 19888..20127 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 52..308 of consensus" ignored annotation: repeat_region 20136..20392 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 1..273 of consensus" ignored annotation: misc_feature 21635..21764 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: misc_feature 22256..22370 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: repeat_region 22612..22899 ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 23507..23749 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 1..256 of consensus" ignored annotation: repeat_region 24182..24294 ignored annotation: /note="MLT1D element fragment" ignored annotation: repeat_region 24390..24423 ignored annotation: /note="17 copies of 2 mer 100 % conserved" ignored annotation: repeat_region 24621..24908 ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 25156..25333 ignored annotation: /note="2 copies of 89 mer 85 % conserved" ignored annotation: repeat_region 25569..25751 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 1..196 of consensus" ignored annotation: repeat_region 25772..25833 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 246..308 of consensus" ignored annotation: repeat_region 26302..26526 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..72 of consensus" ignored annotation: repeat_region 26528..26562 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 35..1 of consensus" ignored annotation: misc_feature 27182..27292 ignored annotation: /note="expressed region - matched by multiple ESTs" ignored annotation: repeat_region 27444..27487 ignored annotation: /note="4 copies of 11 mer 93 % conserved" ignored annotation: repeat_region 27707..27985 ignored annotation: /note="Alu repeat: matches 13..308 of consensus" ignored annotation: repeat_region 28403..28684 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 28717..28972 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 38..298 of consensus" ignored annotation: repeat_region 28999..29044 ignored annotation: /note="23 copies of 2 mer 91 % conserved" ignored annotation: repeat_region 29727..30019 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 32191..32264 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..232 of consensus" ignored annotation: BASE COUNT 7156 a 9756 c 9171 g 6186 t // ** orig/raws/HSRA36:677: missing "mRNA" entry === HSRAS1 === locus = HSRAS1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: mutation 678 ignored annotation: /note="G is GCGGCGG in oncogene T24" ignored annotation: gene 1664..3347 ignored annotation: /gene="c-Ha-ras-1" CDS = 1664..1774,2042..2220,2374..2533,3231..3350 ignored annotation: /note="c-Ha-ras-1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g35887" ignored annotation: /db_xref="SWISS-PROT:P01112" translation = MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS ignored annotation: mutation 1692 ignored annotation: /gene="c-Ha-ras-1" ignored annotation: /note="G is T in oncogene T24" ignored annotation: mutation 1783 ignored annotation: /gene="c-Ha-ras-1" ignored annotation: /note="A is G in oncogene T24" ignored annotation: mutation 2707 ignored annotation: /gene="c-Ha-ras-1" ignored annotation: /note="A is G in oncogene T24" ignored annotation: misc_feature 3722..3727 ignored annotation: /note="other site (polyA signal)" ignored annotation: polyA_site 3744 ignored annotation: /note="polyA addition site" ignored annotation: BASE COUNT 946 a 2287 c 2113 g 1107 t // ** orig/raws/HSRAS1:159: missing "mRNA" entry === HSREP10 === locus = HSREP10 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" CDS = 699..755,1770..1878,1995..2105,6932..7989 ignored annotation: /codon_start=1 ignored annotation: /product="tubulin 5-beta" ignored annotation: /db_xref="PID:g35959" ignored annotation: /db_xref="SWISS-PROT:P04350" translation = MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPAFAPLTSRGSQQYRGLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEQGEFEEEAEEEVA ignored annotation: intron 756..1769 ignored annotation: /note="intron I" ignored annotation: intron 1879..1994 ignored annotation: /note="intron II" ignored annotation: intron 2106..6931 ignored annotation: /note="intron III" ignored annotation: repeat_region 2613..2617 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 2618..2922 ignored annotation: /note="Alu sequence A" ignored annotation: repeat_region 2923..2927 ignored annotation: /note="direct repeat" ignored annotation: repeat_region 2933..2945 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 2946..3246 ignored annotation: /note="Alu sequence B" ignored annotation: repeat_region 3247..3259 ignored annotation: /note="direct repeat" ignored annotation: repeat_region 3285..3288 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 3289..3583 ignored annotation: /note="Alu sequence C" ignored annotation: repeat_region 3584..3587 ignored annotation: /note="direct repeat" ignored annotation: repeat_region 3833..3840 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 3841..4117 ignored annotation: /note="Alu sequence D" ignored annotation: repeat_region 4118..4124 ignored annotation: /note="direct repeat" ignored annotation: repeat_region 4925..4931 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 4932..5241 ignored annotation: /note="Alu sequence E" ignored annotation: repeat_region 5242..5249 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 5250..5515 ignored annotation: /note="Alu sequence F" ignored annotation: repeat_region 5516..5523 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 5602..5903 ignored annotation: /note="Alu sequence G" ignored annotation: misc_feature 5922..6272 ignored annotation: /note="Alu sequence H" ignored annotation: misc_feature 6323..6451 ignored annotation: /note="Alu sequence I" ignored annotation: repeat_region 6429..6440 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 6441..6806 ignored annotation: /note="Alu sequence J" ignored annotation: repeat_region 6807..6818 ignored annotation: /note="direct repeat" ignored annotation: misc_feature 8812..8817 ignored annotation: /note="polyadenylation signal" ignored annotation: misc_feature 8816..8821 ignored annotation: /note="polyadenylation signal" ignored annotation: BASE COUNT 1900 a 2617 c 2370 g 1987 t // ** orig/raws/HSREP10:239: missing "mRNA" entry === HSRING3GE === locus = HSRING3GE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="cosmid o27" ignored annotation: /chromosome="6" ignored annotation: /map="p21.3" ignored annotation: promoter 205..228 ignored annotation: /note="SP1 motif" ignored annotation: exon 236..1276 ignored annotation: /number=1 mRNA = 236..1276,2811..3114,3729..3866,4375..4513,4595..4809,4907..5281,5787..5915,6102..6350,6471..6733,8171..8475,8685..8807,8925..9632 ignored annotation: promoter 346..352 ignored annotation: /note="CREB motif" ignored annotation: promoter 1159..1168 ignored annotation: /note="Krueppel motif" ignored annotation: intron 1277..2810 ignored annotation: /number=1 ignored annotation: promoter 1486..1502 ignored annotation: /note="CdxA motif" ignored annotation: promoter 1599..1604 ignored annotation: /note="NIT2 motif" ignored annotation: promoter 1699..1708 ignored annotation: /note="NFkB motif" ignored annotation: promoter 2215..2221 ignored annotation: /note="SRY" ignored annotation: promoter 2600..2605 ignored annotation: /note="NIT2 motif" ignored annotation: promoter 2618..2624 ignored annotation: /note="CdxA motif" ignored annotation: exon 2811..3114 ignored annotation: /number=2 ignored annotation: gene 2923..9061 ignored annotation: /gene="RING3" CDS = 2923..3114,3729..3866,4375..4513,4595..4809,4907..5281,5787..5915,6102..6350,6471..6733,8171..8475,8685..8807,8925..9061 ignored annotation: /gene="RING3" ignored annotation: /codon_start=1 ignored annotation: /product="kinase" ignored annotation: /db_xref="PID:e243292" ignored annotation: /db_xref="PID:g1370115" translation = MASVPALQLTPANPPPPEVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHKKGAKLAALQGSVTSAHQVPAVSSVSHTALYTPPPEIPTTVFNIPHPSVISSPLLKSLHSAGPPLLAVTAAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSPASPPGSLEPKAARLPPMRRESGRPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDEPLEPGPLPVSTAMPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESESSDSEEERAHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKAEKHRGRAGADEDDKGPRAPRPPQPKKSKKASGSGGGSAALGPSGFGPSGGSGTKLPKKATKTAPPALPTGYDSEEEEESRPMSYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLRDSNPEEIEIDFETLKPSTLRELERYVLSCLRKKPRKPYTIKKPVGKTKEELALEKKRELEKRLQDVSGQLNSTKKPPKKANEKTESSSAQQVAVSRLSASSSSSDSSSSSSSSSSSDTSDSDSG ignored annotation: intron 3115..3728 ignored annotation: /gene="RING3" ignored annotation: /number=2 ignored annotation: repeat_region 3630..3660 ignored annotation: /rpt_family="MVR" ignored annotation: /rpt_unit=GT ignored annotation: exon 3729..3866 ignored annotation: /gene="RING3" ignored annotation: /number=3 ignored annotation: intron 3867..4374 ignored annotation: /gene="RING3" ignored annotation: /number=3 ignored annotation: exon 4375..4513 ignored annotation: /gene="RING3" ignored annotation: /number=4 ignored annotation: intron 4514..4594 ignored annotation: /gene="RING3" ignored annotation: /number=4 ignored annotation: exon 4595..4809 ignored annotation: /gene="RING3" ignored annotation: /number=5 ignored annotation: intron 4810..4906 ignored annotation: /gene="RING3" ignored annotation: /number=5 ignored annotation: exon 4907..5281 ignored annotation: /gene="RING3" ignored annotation: /number=6 ignored annotation: intron 5282..5786 ignored annotation: /gene="RING3" ignored annotation: /number=6 ignored annotation: exon 5787..5915 ignored annotation: /gene="RING3" ignored annotation: /number=7 ignored annotation: intron 5916..6101 ignored annotation: /gene="RING3" ignored annotation: /number=7 ignored annotation: exon 6102..6350 ignored annotation: /gene="RING3" ignored annotation: /number=8 ignored annotation: intron 6351..6470 ignored annotation: /gene="RING3" ignored annotation: /number=8 ignored annotation: exon 6471..6733 ignored annotation: /gene="RING3" ignored annotation: /number=9 ignored annotation: intron 6734..8170 ignored annotation: /gene="RING3" ignored annotation: /number=9 ignored annotation: repeat_region complement(7388..7710) ignored annotation: /note="Sx" ignored annotation: /rpt_family="alu" ignored annotation: exon 8171..8475 ignored annotation: /gene="RING3" ignored annotation: /number=10 ignored annotation: intron 8476..8684 ignored annotation: /gene="RING3" ignored annotation: /number=10 ignored annotation: exon 8685..8807 ignored annotation: /gene="RING3" ignored annotation: /number=11 ignored annotation: intron 8808..8924 ignored annotation: /gene="RING3" ignored annotation: /number=11 ignored annotation: exon 8925..9632 ignored annotation: /number=12 ignored annotation: polyA_signal 9633..9638 ignored annotation: repeat_region 10086..10332 ignored annotation: /note="sb0" ignored annotation: /rpt_family="alu" ignored annotation: repeat_region 13548..13721 ignored annotation: /note="J" ignored annotation: /rpt_family="alu" ignored annotation: BASE COUNT 3579 a 3178 c 3712 g 4092 t mRNA range 236..1276 mRNA range 2811..3114 mRNA range 3729..3866 mRNA range 4375..4513 mRNA range 4595..4809 mRNA range 4907..5281 mRNA range 5787..5915 mRNA range 6102..6350 mRNA range 6471..6733 mRNA range 8171..8475 mRNA range 8685..8807 mRNA range 8925..9632 CDS range 2923..3114 CDS range 3729..3866 CDS range 4375..4513 CDS range 4595..4809 CDS range 4907..5281 CDS range 5787..5915 CDS range 6102..6350 CDS range 6471..6733 CDS range 8171..8475 CDS range 8685..8807 CDS range 8925..9061 seq_ini = 1 seq_fin = 14561 i = 9061 last codon bas = gc[taa]ggg last codon lab = EF[DEF]YYY === HSRODPDE === locus = HSRODPDE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="retinal" ignored annotation: /cell_type="rod photoreceptor" ignored annotation: /clone_lib="EMBL 3 genomic" ignored annotation: CAAT_signal 138..141 ignored annotation: TATA_signal 190..194 ignored annotation: exon 209..252 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=1 mRNA = 209..252,3339..3543,5006..5046,5538..6470 ignored annotation: /gene="rod cG-PDE G" ignored annotation: gene 209..6470 ignored annotation: /gene="rod cG-PDE G" ignored annotation: intron 253..3338 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=1 ignored annotation: exon 3339..3543 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=2 CDS = 3398..3543,5006..5046,5538..5614 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /EC_number="3.1.4.17" ignored annotation: /codon_start=1 ignored annotation: /product="3',5'-cyclic-nucleotide phosphodiesterase" ignored annotation: /db_xref="PID:g36108" ignored annotation: /db_xref="SWISS-PROT:P18545" translation = MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII ignored annotation: intron 3544..5005 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=2 ignored annotation: exon 5006..5046 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=3 ignored annotation: intron 5047..5537 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=3 ignored annotation: exon 5538..6470 ignored annotation: /gene="rod cG-PDE G" ignored annotation: /number=4 ignored annotation: BASE COUNT 1454 a 1929 c 1967 g 1120 t mRNA range 209..252 mRNA range 3339..3543 mRNA range 5006..5046 mRNA range 5538..6470 CDS range 3398..3543 CDS range 5006..5046 CDS range 5538..5614 seq_ini = 1 seq_fin = 6470 i = 5614 last codon bas = tc[tag]cac last codon lab = EF[DEF]YYY === HSRPII145 === locus = HSRPII145 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="HeLa cells" ignored annotation: promoter 1..372 ignored annotation: exon 373..448 ignored annotation: /number=1 mRNA = 373..448,533..587,834..907,996..1070,1181..1232,1430..>1530 CDS = 390..448,533..587,834..907,996..1070,1181..1232,1430..1492 ignored annotation: /codon_start=1 ignored annotation: /product="RNA Polymerase II subunit 14.5 kD" ignored annotation: /db_xref="PID:g397150" ignored annotation: /db_xref="SWISS-PROT:P36954" translation = MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE ignored annotation: intron 449..532 ignored annotation: /number=1 ignored annotation: exon 533..587 ignored annotation: /number=2 ignored annotation: intron 588..833 ignored annotation: /number=2 ignored annotation: exon 834..907 ignored annotation: /number=3 ignored annotation: intron 908..995 ignored annotation: /number=3 ignored annotation: misc_feature 930 ignored annotation: /note="That base was not found in an independent allele. ignored annotation: The intron 3 can therefore be shorter by one base pair." ignored annotation: exon 996..1070 ignored annotation: /number=4 ignored annotation: intron 1071..1180 ignored annotation: /number=4 ignored annotation: exon 1181..1232 ignored annotation: /number=5 ignored annotation: intron 1233..1429 ignored annotation: /number=5 ignored annotation: exon 1430..>1530 ignored annotation: /number=6 ignored annotation: BASE COUNT 386 a 653 c 627 g 427 t mRNA range 373..448 mRNA range 533..587 mRNA range 834..907 mRNA range 996..1070 mRNA range 1181..1232 mRNA range 1430..1530 CDS range 390..448 CDS range 533..587 CDS range 834..907 CDS range 996..1070 CDS range 1181..1232 CDS range 1430..1492 seq_ini = 1 seq_fin = 2093 i = 1492 last codon bas = ag[tga]cct last codon lab = EF[DEF]YYY === HSRPS3AGE === locus = HSRPS3AGE ignored annotation: /organism="Homo sapiens" ignored annotation: /note="single copy" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphoblast" ignored annotation: /clone_lib="EMBL3/human genomic lymphoblast DNA" ignored annotation: /clone="16/2" ignored annotation: /chromosome="4" ignored annotation: exon 362..448 ignored annotation: /number=1 mRNA = 362..448,1212..1315,1702..1889,3598..3806,4911..5020,5209..5374 ignored annotation: gene 387..5330 ignored annotation: /gene="hRPS3a" CDS = 387..448,1212..1315,1702..1889,3598..3806,4911..5020,5209..5330 ignored annotation: /gene="hRPS3a" ignored annotation: /codon_start=1 ignored annotation: /product="ribosomal protein S3a" ignored annotation: /db_xref="PID:g854179" ignored annotation: /db_xref="SWISS-PROT:P49241" translation = MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV ignored annotation: intron 449..1211 ignored annotation: /gene="hRPS3a" ignored annotation: /number=1 ignored annotation: exon 1212..1315 ignored annotation: /gene="hRPS3a" ignored annotation: /number=2 ignored annotation: intron 1316..1701 ignored annotation: /gene="hRPS3a" ignored annotation: /number=2 ignored annotation: exon 1702..1889 ignored annotation: /gene="hRPS3a" ignored annotation: /number=3 ignored annotation: intron 1890..3597 ignored annotation: /gene="hRPS3a" ignored annotation: /number=3 ignored annotation: exon 3598..3806 ignored annotation: /gene="hRPS3a" ignored annotation: /number=4 ignored annotation: intron 3807..4910 ignored annotation: /gene="hRPS3a" ignored annotation: /number=4 ignored annotation: exon 4911..5020 ignored annotation: /gene="hRPS3a" ignored annotation: /number=5 ignored annotation: intron 5021..5208 ignored annotation: /gene="hRPS3a" ignored annotation: /number=5 ignored annotation: exon 5209..5374 ignored annotation: /number=6 ignored annotation: BASE COUNT 1484 a 1003 c 1327 g 1715 t mRNA range 362..448 mRNA range 1212..1315 mRNA range 1702..1889 mRNA range 3598..3806 mRNA range 4911..5020 mRNA range 5209..5374 CDS range 387..448 CDS range 1212..1315 CDS range 1702..1889 CDS range 3598..3806 CDS range 4911..5020 CDS range 5209..5330 seq_ini = 1 seq_fin = 5529 i = 5330 last codon bas = tt[taa]agt last codon lab = EF[DEF]YYY === HSRPS7 === locus = HSRPS7 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="Lymphocyte" ignored annotation: /clone_lib="human lymphocyte library (Stratagene)" ignored annotation: /chromosome="2" ignored annotation: /map="2p25" mRNA = 1759..1830,2082..2165,2297..2368,2964..3107,4189..4253,6583..6733,7277..7375 ignored annotation: /gene="rpS7" ignored annotation: gene 1759..7375 ignored annotation: /gene="rpS7" ignored annotation: exon 1759..1830 ignored annotation: /gene="rpS7" ignored annotation: /number=1 ignored annotation: intron 1831..2081 ignored annotation: /gene="rpS7" ignored annotation: /number=1 ignored annotation: exon 2082..2165 ignored annotation: /gene="rpS7" ignored annotation: /number=2 CDS = 2091..2165,2297..2368,2964..3107,4189..4253,6583..6733,7277..7354 ignored annotation: /gene="rpS7" ignored annotation: /codon_start=1 ignored annotation: /product="ribosomal protein S7" ignored annotation: /db_xref="PID:g551251" ignored annotation: /db_xref="SWISS-PROT:P23821" translation = MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL ignored annotation: intron 2166..2296 ignored annotation: /gene="rpS7" ignored annotation: /number=2 ignored annotation: exon 2297..2368 ignored annotation: /gene="rpS7" ignored annotation: /number=3 ignored annotation: intron 2369..2963 ignored annotation: /gene="rpS7" ignored annotation: /number=3 ignored annotation: exon 2964..3107 ignored annotation: /gene="rpS7" ignored annotation: /number=4 ignored annotation: intron 3108..4188 ignored annotation: /gene="rpS7" ignored annotation: /number=4 ignored annotation: exon 4189..4253 ignored annotation: /gene="rpS7" ignored annotation: /number=5 ignored annotation: intron 4254..6582 ignored annotation: /gene="rpS7" ignored annotation: /number=5 ignored annotation: exon 6583..6733 ignored annotation: /gene="rpS7" ignored annotation: /number=6 ignored annotation: intron 6734..7276 ignored annotation: /gene="rpS7" ignored annotation: /number=6 ignored annotation: exon 7277..7375 ignored annotation: /gene="rpS7" ignored annotation: /number=7 ignored annotation: 3'UTR 7376..7513 ignored annotation: BASE COUNT 1885 a 1506 c 1904 g 2218 t mRNA range 1759..1830 mRNA range 2082..2165 mRNA range 2297..2368 mRNA range 2964..3107 mRNA range 4189..4253 mRNA range 6583..6733 mRNA range 7277..7375 CDS range 2091..2165 CDS range 2297..2368 CDS range 2964..3107 CDS range 4189..4253 CDS range 6583..6733 CDS range 7277..7354 seq_ini = 1 seq_fin = 7513 i = 7354 last codon bas = tg[taa]aca last codon lab = EF[DEF]YYY === HSRPS8 === locus = HSRPS8 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="male leukocytes" ignored annotation: /chromosome="1" ignored annotation: /sex="Male" ignored annotation: /map="1p32-34.1" mRNA = 228..254,685..791,1326..1425,2263..2438,2649..2778,3225..3389 ignored annotation: /gene="rpS8" ignored annotation: prim_transcript 228..3389 ignored annotation: /gene="rpS8" ignored annotation: exon 228..254 ignored annotation: /gene="rpS8" ignored annotation: /number=1 ignored annotation: gene 228..3389 ignored annotation: /gene="rpS8" CDS = 251..254,685..791,1326..1425,2263..2438,2649..2778,3225..3334 ignored annotation: /gene="rpS8" ignored annotation: /codon_start=1 ignored annotation: /product="ribosomal protein S8" ignored annotation: /db_xref="PID:g36150" ignored annotation: /db_xref="SWISS-PROT:P09058" translation = MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK ignored annotation: intron 255..684 ignored annotation: /gene="rpS8" ignored annotation: /number=1 ignored annotation: exon 685..791 ignored annotation: /gene="rpS8" ignored annotation: /number=2 ignored annotation: intron 792..1325 ignored annotation: /gene="rpS8" ignored annotation: /number=2 ignored annotation: exon 1326..1425 ignored annotation: /gene="rpS8" ignored annotation: /number=3 ignored annotation: intron 1426..2262 ignored annotation: /gene="rpS8" ignored annotation: /number=3 ignored annotation: misc_feature 1492..1614 ignored annotation: /gene="rpS8" ignored annotation: /note="ALU homology" ignored annotation: misc_feature 1737..2017 ignored annotation: /gene="rpS8" ignored annotation: /note="ALU homology" ignored annotation: exon 2263..2438 ignored annotation: /gene="rpS8" ignored annotation: /number=4 ignored annotation: intron 2439..2648 ignored annotation: /gene="rpS8" ignored annotation: /number=4 ignored annotation: exon 2649..2778 ignored annotation: /gene="rpS8" ignored annotation: /number=5 ignored annotation: intron 2779..3224 ignored annotation: /gene="rpS8" ignored annotation: /number=5 ignored annotation: exon 3225..3389 ignored annotation: /gene="rpS8" ignored annotation: /number=6 ignored annotation: polyA_signal 3360..3365 ignored annotation: /gene="rpS8" ignored annotation: BASE COUNT 736 a 902 c 1044 g 848 t mRNA range 228..254 mRNA range 685..791 mRNA range 1326..1425 mRNA range 2263..2438 mRNA range 2649..2778 mRNA range 3225..3389 CDS range 251..254 CDS range 685..791 CDS range 1326..1425 CDS range 2263..2438 CDS range 2649..2778 CDS range 3225..3334 seq_ini = 1 seq_fin = 3530 i = 3334 last codon bas = aa[taa]atc last codon lab = EF[DEF]YYY === HSRSGCG === locus = HSRSGCG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="p13.1" ignored annotation: exon 1..64 ignored annotation: /gene="retGC" ignored annotation: /number=1 ignored annotation: gene 1..12810 ignored annotation: /gene="retGC" mRNA = 1..64,369..1098,1182..1486,3693..4044,4390..4474,4755..4857,5260..5361,6833..6913,8101..8307,8407..8563,9061..9210,9837..9985,10557..10720,10815..11007,11284..11458,11699..11797,11883..11977,12161..12246,12400..12511,12599..12810 ignored annotation: /gene="retGC" ignored annotation: intron 65..368 ignored annotation: /gene="retGC" ignored annotation: /number=1 ignored annotation: exon 369..1098 ignored annotation: /gene="retGC" ignored annotation: /number=2 CDS = 378..1098,1182..1486,3693..4044,4390..4474,4755..4857,5260..5361,6833..6913,8101..8307,8407..8563,9061..9210,9837..9985,10557..10720,10815..11007,11284..11458,11699..11797,11883..11977,12161..12246,12400..12487 ignored annotation: /gene="retGC" ignored annotation: /function="converts GTP to cGMP in the retina" ignored annotation: /codon_start=1 ignored annotation: /product="guanylyl cyclase" ignored annotation: /db_xref="PID:e1203975" ignored annotation: /db_xref="PID:g2695890" translation = MTACARRAGGLPDPGLCGPAWWAPSLPRLPRALPRLPLLLLLLLLQPPALSAVFTVGVLGPWACDPIFSRARPDLAARLAAARLNRDPGLAGGPRFEVALLPEPCRTPGSLGAVSSALARVSGLVGPVNPAACRPAELLAEEAGIALVPWGCPWTQAEGTTAPAVTPAADALYALLRAFGWARVALVTAPQDLWVEAGRSLSTALRARGLPVASVTSMEPLDLSGAREALRKVRDGPRVTAVIMVMHSVLLGGEEQRYLLEAAEELGLTDGSLVFLPFDTIHYALSPGPEALAALANSSQLRRAHDAVLTLTRHCPSEGSVLDSLRRAQERRELPSDLNLQQVSPLFGTIYDAVFLLARGVAEARAAAGGRWVSGAAVARHIRDAQVPGFCGDLGGDEEPPFVLLDTDAAGDRLFATYMLDPARGSFLSAGTRMHFPRGGSAPGPDPSCWFDPNNICGGGLEPGLVFLGFLLVVGMGLAGAFLAHYVRHRLLHMQMVSGPNKIILTVDDITFLHPHGGTSRKVAQGSRSSLGARSMSDIRSGPSQHLDSPNIGVYEGDRVWLKKFPGDQHIAIRPATKTAFSKLQELRHENVALYLGLFLARGAEGPAALWEGNLAVVSEHCTRGSLQDLLAQREIKLDWMFKSSLLLDLIKGIRYLHHRGVAHGRLKSRNCIVDGRFVLKITDHGHGRLLEAQKVLPEPPRAEDQLWTAPELLRDPALERRGTLAGDVFSLAIIMQEVVCRSAPYAMLELTPEEVVQRVRSPPPLCRPLVSMDQAPVECILLMKQCWAEQPELRPSMDHTFDLFKNINKGRKTNIIDSMLRMLEQYSSNLEDLIRERTEELELEKQKTDRLLTQMLPPSVAEALKTGTPVEPEYFEQVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDAYMVASGLPQRNGQRHAAEIANMSLDILSAVGTFRMRHMPEVPVRIRIGLHSGPCVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVNLSTVGILRALDSGYQVELRGRTELKGKGAEDTFWLVGRRGFNKPIPKPPDLQPGSSNHGISLQEIPPERRRKLEKARPGQFS ignored annotation: intron 1099..1181 ignored annotation: /gene="retGC" ignored annotation: /number=2 ignored annotation: exon 1182..1486 ignored annotation: /gene="retGC" ignored annotation: /number=3 ignored annotation: intron 1487..3692 ignored annotation: /gene="retGC" ignored annotation: /number=3 ignored annotation: exon 3693..4044 ignored annotation: /gene="retGC" ignored annotation: /number=4 ignored annotation: intron 4045..4389 ignored annotation: /gene="retGC" ignored annotation: /number=4 ignored annotation: exon 4390..4474 ignored annotation: /gene="retGC" ignored annotation: /number=5 ignored annotation: intron 4475..4754 ignored annotation: /gene="retGC" ignored annotation: /number=5 ignored annotation: exon 4755..4857 ignored annotation: /gene="retGC" ignored annotation: /number=6 ignored annotation: intron 4858..5259 ignored annotation: /gene="retGC" ignored annotation: /number=6 ignored annotation: exon 5260..5361 ignored annotation: /gene="retGC" ignored annotation: /number=7 ignored annotation: intron 5362..6832 ignored annotation: /gene="retGC" ignored annotation: /number=7 ignored annotation: exon 6833..6913 ignored annotation: /gene="retGC" ignored annotation: /number=8 ignored annotation: intron 6914..8100 ignored annotation: /gene="retGC" ignored annotation: /number=8 ignored annotation: exon 8101..8307 ignored annotation: /gene="retGC" ignored annotation: /number=9 ignored annotation: intron 8308..8406 ignored annotation: /gene="retGC" ignored annotation: /number=9 ignored annotation: exon 8407..8563 ignored annotation: /gene="retGC" ignored annotation: /number=10 ignored annotation: intron 8564..9060 ignored annotation: /gene="retGC" ignored annotation: /number=10 ignored annotation: exon 9061..9210 ignored annotation: /gene="retGC" ignored annotation: /number=11 ignored annotation: intron 9211..9836 ignored annotation: /gene="retGC" ignored annotation: /number=11 ignored annotation: exon 9837..9985 ignored annotation: /gene="retGC" ignored annotation: /number=12 ignored annotation: intron 9986..10556 ignored annotation: /gene="retGC" ignored annotation: /number=12 ignored annotation: exon 10557..10720 ignored annotation: /gene="retGC" ignored annotation: /number=13 ignored annotation: intron 10721..10814 ignored annotation: /gene="retGC" ignored annotation: /number=13 ignored annotation: exon 10815..11007 ignored annotation: /gene="retGC" ignored annotation: /number=14 ignored annotation: intron 11008..11283 ignored annotation: /gene="retGC" ignored annotation: /number=14 ignored annotation: exon 11284..11458 ignored annotation: /gene="retGC" ignored annotation: /number=15 ignored annotation: intron 11459..11698 ignored annotation: /gene="retGC" ignored annotation: /number=15 ignored annotation: exon 11699..11797 ignored annotation: /gene="retGC" ignored annotation: /number=16 ignored annotation: intron 11798..11882 ignored annotation: /gene="retGC" ignored annotation: /number=16 ignored annotation: exon 11883..11977 ignored annotation: /gene="retGC" ignored annotation: /number=17 ignored annotation: intron 11978..12160 ignored annotation: /gene="retGC" ignored annotation: /number=17 ignored annotation: exon 12161..12246 ignored annotation: /gene="retGC" ignored annotation: /number=18 ignored annotation: intron 12247..12399 ignored annotation: /gene="retGC" ignored annotation: /number=18 ignored annotation: exon 12400..12511 ignored annotation: /gene="retGC" ignored annotation: /number=19 ignored annotation: intron 12512..12598 ignored annotation: /gene="retGC" ignored annotation: /number=19 ignored annotation: exon 12599..12810 ignored annotation: /gene="retGC" ignored annotation: /number=20 ignored annotation: BASE COUNT 2712 a 3673 c 3655 g 2756 t 14 others 7321 aaaaaacnnn nnnnaaaaaa aaaatacata aacaaaagaa aagaaagaaa gtggcaccgc ** orig/raws/HSRSGCG:310: invalid base letter "n" === HSS100A2 === locus = HSS100A2 ignored annotation: /organism="Homo sapiens" ignored annotation: /isolate="lambda 1R" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /map="q21" ignored annotation: TATA_signal 4614..4619 ignored annotation: exon 4657..4683 ignored annotation: /note="untranslated" ignored annotation: /number=1 ignored annotation: intron 4684..6307 ignored annotation: /number=1 ignored annotation: exon 6308..6461 ignored annotation: /number=2 ignored annotation: gene 6321..8576 ignored annotation: /gene="S100A2" CDS = 6321..6461,8424..8576 ignored annotation: /gene="S100A2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e307988" ignored annotation: /db_xref="PID:g2065175" translation = MCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMCNDFFQGCPDRP ignored annotation: intron 6462..8423 ignored annotation: /gene="S100A2" ignored annotation: /number=2 ignored annotation: exon 8424..>8670 ignored annotation: /number=3 ignored annotation: polyA_signal 8648..8653 ignored annotation: BASE COUNT 1808 a 2218 c 2452 g 2192 t // ** orig/raws/HSS100A2:199: missing "mRNA" entry === HSSAA1A === locus = HSSAA1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_signal 1797..1804 ignored annotation: /note="TATA box" ignored annotation: prim_transcript 1812..>6485 ignored annotation: /note="GSAA1 mRNA and introns" CDS = 1834..1844,3175..3269,5908..6046,6320..6458 ignored annotation: /note="serum amyloid A" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g36306" ignored annotation: /db_xref="SWISS-PROT:P22614" translation = MFPSRMKLSTGIIFCSLVLGVSSQGWLTFLKAAGQGAKDMWRAYSDMKEANYKKSDKYFHARGNYDAVQRGPGGVWATEVISDARENVQRLTGDHAEDSLAGQATNKWGQSGKDPNHFRPAGLPEKY ignored annotation: intron 1845..3174 ignored annotation: /note="GSAA1 intron A" ignored annotation: intron 3270..5907 ignored annotation: /note="GSAA1 intron B" ignored annotation: intron 6047..6319 ignored annotation: /note="GSAA1 intron C" ignored annotation: misc_signal 6568..6574 ignored annotation: /note="pot. poly-A signal" ignored annotation: misc_signal 6580..6585 ignored annotation: /note="pot. poly-A signal" ignored annotation: BASE COUNT 1979 a 1491 c 1483 g 1989 t 1 others 6901 ngatggaatt agatagctta tattaggtat tagaagcagt tga ** orig/raws/HSSAA1A:161: invalid base letter "n" === HSSGK === locus = HSSGK ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="6" ignored annotation: /sex="Male" ignored annotation: /cell_line="Bristol8" ignored annotation: /map="q23" ignored annotation: exon 36..155 ignored annotation: /gene="sgk" ignored annotation: /number=1 mRNA = 36..155,303..378,806..881,1317..1421,1526..1609,1725..1856,2106..2218,2560..2683,3141..3236,3652..3807,3915..4004,4349..5526 ignored annotation: /gene="sgk" ignored annotation: /product="serine/threonine protein kinase" ignored annotation: gene 36..5526 ignored annotation: /gene="sgk" CDS = 80..155,303..378,806..881,1317..1421,1526..1609,1725..1856,2106..2218,2560..2683,3141..3236,3652..3807,3915..4004,4349..4516 ignored annotation: /gene="sgk" ignored annotation: /codon_start=1 ignored annotation: /product="serine/threonine protein kinase" ignored annotation: /db_xref="PID:e1154172" ignored annotation: /db_xref="PID:g2463201" translation = MTVKTEAAKGTLTYSRMRGMVAILIAFMKQRRMGLNDFIQKIANNSYACKHPEVQSILKISQPQEPELMNANPSPPPSPSQQINLGPSSNPHAKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPNELRHFDPEFTEEPVPNSIGKSPDSVLVTASVKEAAEAFLGFSYAPPTDSFL ignored annotation: intron 156..302 ignored annotation: /gene="sgk" ignored annotation: /number=1 ignored annotation: exon 303..378 ignored annotation: /gene="sgk" ignored annotation: /number=2 ignored annotation: intron 379..805 ignored annotation: /gene="sgk" ignored annotation: /number=2 ignored annotation: exon 806..881 ignored annotation: /gene="sgk" ignored annotation: /number=3 ignored annotation: intron 882..1316 ignored annotation: /gene="sgk" ignored annotation: /number=3 ignored annotation: exon 1317..1421 ignored annotation: /gene="sgk" ignored annotation: /number=4 ignored annotation: intron 1422..1525 ignored annotation: /gene="sgk" ignored annotation: /number=4 ignored annotation: exon 1526..1609 ignored annotation: /gene="sgk" ignored annotation: /number=5 ignored annotation: intron 1610..1724 ignored annotation: /gene="sgk" ignored annotation: /number=5 ignored annotation: exon 1725..1856 ignored annotation: /gene="sgk" ignored annotation: /number=6 ignored annotation: intron 1857..2105 ignored annotation: /gene="sgk" ignored annotation: /number=6 ignored annotation: exon 2106..2218 ignored annotation: /gene="sgk" ignored annotation: /number=7 ignored annotation: intron 2219..2559 ignored annotation: /gene="sgk" ignored annotation: /number=7 ignored annotation: exon 2560..2683 ignored annotation: /gene="sgk" ignored annotation: /number=8 ignored annotation: intron 2684..3140 ignored annotation: /gene="sgk" ignored annotation: /number=8 ignored annotation: exon 3141..3236 ignored annotation: /gene="sgk" ignored annotation: /number=9 ignored annotation: intron 3237..3651 ignored annotation: /gene="sgk" ignored annotation: /number=9 ignored annotation: exon 3652..3807 ignored annotation: /gene="sgk" ignored annotation: /number=10 ignored annotation: intron 3808..3914 ignored annotation: /gene="sgk" ignored annotation: /number=10 ignored annotation: exon 3915..4004 ignored annotation: /gene="sgk" ignored annotation: /number=11 ignored annotation: intron 4005..4348 ignored annotation: /gene="sgk" ignored annotation: /number=11 ignored annotation: exon 4349..5526 ignored annotation: /gene="sgk" ignored annotation: /number=12 ignored annotation: BASE COUNT 1518 a 1145 c 1219 g 1836 t mRNA range 36..155 mRNA range 303..378 mRNA range 806..881 mRNA range 1317..1421 mRNA range 1526..1609 mRNA range 1725..1856 mRNA range 2106..2218 mRNA range 2560..2683 mRNA range 3141..3236 mRNA range 3652..3807 mRNA range 3915..4004 mRNA range 4349..5526 CDS range 80..155 CDS range 303..378 CDS range 806..881 CDS range 1317..1421 CDS range 1526..1609 CDS range 1725..1856 CDS range 2106..2218 CDS range 2560..2683 CDS range 3141..3236 CDS range 3652..3807 CDS range 3915..4004 CDS range 4349..4516 seq_ini = 1 seq_fin = 5718 i = 4516 last codon bas = tc[tga]acc last codon lab = EF[DEF]YYY === HSSHBG === locus = HSSHBG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="SHBGq23" ignored annotation: /tissue_type="leucocytes" ignored annotation: /clone_lib="cosmid lambda-loric" CDS = 361..471,604..695,868..1057,1389..1550,1778..1937,2068..2204,2940..3147,3392..3540 ignored annotation: /codon_start=1 ignored annotation: /product="sex hormone-binding globulin (SHBG)" ignored annotation: /db_xref="PID:g296673" ignored annotation: /db_xref="SWISS-PROT:P04278" translation = MESRGPLATSRLLLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSCDVESNPGIFLPPGTQAEFNLRDIPQPHAEPWAFSLDLGLKQAAGSGHLLALGTPENPSWLSLHLQDQKVVLSSGSGPGLDLPLVLGLPLQLKLSMSRVVLSQGSKMKALALPPLGLAPLLNLWAKPQGRLFLGALPGEDSSTSFCLNGLWAQGQRLDVDQALNRSHEIWTHSCPQSPGNGTDASH ignored annotation: exon <361..471 ignored annotation: /number=1 ignored annotation: sig_peptide 361..447 ignored annotation: mat_peptide join(448..471,604..695,868..1057,1389..1550,1778..1937, ignored annotation: 2068..2204,2940..3147,3392..3537) ignored annotation: /product="sex hormone-binding globulin (SHBG)" ignored annotation: intron 472..603 ignored annotation: /number=1 ignored annotation: exon 604..695 ignored annotation: /number=2 ignored annotation: intron 696..867 ignored annotation: /number=2 ignored annotation: exon 868..1057 ignored annotation: /number=3 ignored annotation: intron 1058..1388 ignored annotation: /number=3 ignored annotation: exon 1389..1550 ignored annotation: /number=4 ignored annotation: intron 1551..1777 ignored annotation: /number=4 ignored annotation: exon 1778..1937 ignored annotation: /number=5 ignored annotation: intron 1938..2067 ignored annotation: /number=5 ignored annotation: exon 2068..2204 ignored annotation: /number=6 ignored annotation: intron 2205..2939 ignored annotation: /number=6 ignored annotation: misc_feature 2344..2651 ignored annotation: /note="pot.Alu repeat" ignored annotation: exon 2940..3147 ignored annotation: /number=7 ignored annotation: intron 3148..3391 ignored annotation: /number=7 ignored annotation: exon 3392..>3540 ignored annotation: /number=8 ignored annotation: BASE COUNT 878 a 1029 c 1021 g 882 t // ** orig/raws/HSSHBG:150: missing "mRNA" entry === HSSLIPG === locus = HSSLIPG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: promoter 181..184 ignored annotation: /note="put. CAAT-box" ignored annotation: promoter 242..247 ignored annotation: /note="put. TATA-box" mRNA = 276..375 ignored annotation: /note="put. exon 1" ignored annotation: precursor_RNA 276..2574 ignored annotation: /note="put. primary transcript of SLPI" CDS = 291..375,1092..1250,1668..1817,2397..2401 ignored annotation: /codon_start=1 ignored annotation: /product="secretory leukocyte protease inhibitor (SLPI)" ignored annotation: /db_xref="PID:g758101" ignored annotation: /db_xref="SWISS-PROT:P03973" translation = MKSSGLFPFLVLLALGTLAPWAVEGSGKSFKAGVCPPKKSAQCLRYKKPECQSDWQCPGKKRCCPDTCGIKCLDPVDTPNPTRRKPGKCPVTYGQCLMLNPPNFCEMDGQCKRDLKCCMGMCGKSCVSPVKA ignored annotation: sig_peptide 291..365 ignored annotation: /note="signal peptide (AA -25 to -1)" ignored annotation: mat_peptide join(366..375,1092..1250,1668..1817,2397..2398) ignored annotation: /gene="SLPI" ignored annotation: gene 366..2398 ignored annotation: /gene="SLPI" ignored annotation: intron 376..1091 ignored annotation: /gene="SLPI" ignored annotation: /note="intron I" mRNA 1092..1250 ** orig/raws/HSSLIPG:51: more than one "mRNA" entry === HSSSPN1AG === locus = HSSSPN1AG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="Lung carcinoma" ignored annotation: /cell_line="NCI H157" ignored annotation: /chromosome="X" mRNA = 1098..1342,1583..1634,1725..1808,3258..3359,3450..3490,3614..4096 ignored annotation: exon 1098..1342 ignored annotation: /number=1 ignored annotation: gene 1277..3784 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" CDS = 1277..1342,1583..1634,1725..1808,3258..3359,3450..3490,3614..3784 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g36607" ignored annotation: /db_xref="SWISS-PROT:P21673" translation = MAKFVIRPATAADCSDILRLIKELAEYEYMEEQVILTEKDLLEDGFGEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGASDLSSEEGWRLFKIDKEYLLKMATEE ignored annotation: intron 1343..1582 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=1 ignored annotation: exon 1583..1634 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=2 ignored annotation: intron 1635..1724 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=2 ignored annotation: exon 1725..1808 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=3 ignored annotation: intron 1809..3257 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=3 ignored annotation: exon 3258..3359 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=4 ignored annotation: intron 3360..3449 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=4 ignored annotation: exon 3450..3490 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=5 ignored annotation: intron 3491..3613 ignored annotation: /gene="spermidine/spermine N1-acetyltransferase" ignored annotation: /number=5 ignored annotation: exon 3614..4096 ignored annotation: /number=6 ignored annotation: BASE COUNT 1142 a 854 c 971 g 1129 t mRNA range 1098..1342 mRNA range 1583..1634 mRNA range 1725..1808 mRNA range 3258..3359 mRNA range 3450..3490 mRNA range 3614..4096 CDS range 1277..1342 CDS range 1583..1634 CDS range 1725..1808 CDS range 3258..3359 CDS range 3450..3490 CDS range 3614..3784 seq_ini = 1 seq_fin = 4096 i = 3784 last codon bas = ag[tga]gga last codon lab = EF[DEF]YYY === HSTCRT3D === locus = HSTCRT3D ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 274..284 ignored annotation: /note="T-box; pot. regulatory function" ignored annotation: promoter 303..317 ignored annotation: /note="pot. promoter" ignored annotation: misc_feature 338..443 ignored annotation: /note="pot. leader (5' UT region)" mRNA = 338..498 ignored annotation: /note="pot. exon 1" mRNA 346..498 ** orig/raws/HSTCRT3D:32: more than one "mRNA" entry === HSTNFB === locus = HSTNFB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 791..796 ignored annotation: misc_feature 817..820 ignored annotation: /note="transcription initiation region" CDS = 1276..1374,1461..1566,1814..2226 ignored annotation: /codon_start=1 ignored annotation: /product="lymphotoxin (TNF-beta)" ignored annotation: /db_xref="PID:g312411" ignored annotation: /db_xref="SWISS-PROT:P01374" translation = MTPPERLFLPRVCGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSAAQTARQHPKMHLAHSNLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAFAL ignored annotation: exon <1276..1374 ignored annotation: /number=1 ignored annotation: sig_peptide join(1276..1374,1461..1463) ignored annotation: intron 1375..1460 ignored annotation: /number=1 ignored annotation: intron 1375..1460 ignored annotation: exon 1461..1566 ignored annotation: /number=2 ignored annotation: mat_peptide join(1464..1566,1814..2223) ignored annotation: /product="lymphotoxin (TNF-beta)" ignored annotation: intron 1567..1813 ignored annotation: /number=2 ignored annotation: exon 1814..2854 ignored annotation: /number=3 ignored annotation: polyA_signal 2836..2841 ignored annotation: polyA_site 2854 ignored annotation: BASE COUNT 648 a 953 c 733 g 703 t // ** orig/raws/HSTNFB:102: missing "mRNA" entry === HSTPI1G === locus = HSTPI1G ignored annotation: /organism="Homo sapiens" ignored annotation: /note="Allele: hTPI-8B" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="fetal" ignored annotation: /tissue_type="liver" ignored annotation: variation 200 ignored annotation: /note="polymorphism" ignored annotation: /replace="c" mRNA = 597..749,1916..2039,2151..2235,2310..2442,2740..2825,3101..3188,3317..3880 ignored annotation: /gene="TPI1" ignored annotation: gene 597..3880 ignored annotation: /gene="TPI1" ignored annotation: prim_transcript 597..3880 ignored annotation: /gene="TPI1" ignored annotation: exon 597..749 ignored annotation: /gene="TPI1" ignored annotation: /number=1 CDS = 635..749,1916..2039,2151..2235,2310..2442,2740..2825,3101..3188,3317..3435 ignored annotation: /gene="TPI1" ignored annotation: /EC_number="5.3.1.1" ignored annotation: /codon_start=1 ignored annotation: /product="triosephosphate isomerase" ignored annotation: /db_xref="PID:g37247" ignored annotation: /db_xref="SWISS-PROT:P00938" translation = MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ ignored annotation: intron 750..1915 ignored annotation: /gene="TPI1" ignored annotation: /number=1 ignored annotation: exon 1916..2039 ignored annotation: /gene="TPI1" ignored annotation: /number=2 ignored annotation: intron 2040..2150 ignored annotation: /gene="TPI1" ignored annotation: /number=2 ignored annotation: exon 2151..2235 ignored annotation: /gene="TPI1" ignored annotation: /number=3 ignored annotation: intron 2236..2309 ignored annotation: /gene="TPI1" ignored annotation: /number=3 ignored annotation: exon 2310..2442 ignored annotation: /gene="TPI1" ignored annotation: /number=4 ignored annotation: intron 2443..2739 ignored annotation: /gene="TPI1" ignored annotation: /number=4 ignored annotation: exon 2740..2825 ignored annotation: /gene="TPI1" ignored annotation: /number=5 ignored annotation: intron 2826..3100 ignored annotation: /gene="TPI1" ignored annotation: /number=5 ignored annotation: variation 2898 ignored annotation: /gene="TPI1" ignored annotation: /note="polymorphism" ignored annotation: /replace="g" ignored annotation: exon 3101..3188 ignored annotation: /gene="TPI1" ignored annotation: /number=6 ignored annotation: intron 3189..3316 ignored annotation: /gene="TPI1" ignored annotation: /number=6 ignored annotation: exon 3317..3880 ignored annotation: /gene="TPI1" ignored annotation: /number=7 ignored annotation: BASE COUNT 1013 a 1415 c 1535 g 1042 t mRNA range 597..749 mRNA range 1916..2039 mRNA range 2151..2235 mRNA range 2310..2442 mRNA range 2740..2825 mRNA range 3101..3188 mRNA range 3317..3880 CDS range 635..749 CDS range 1916..2039 CDS range 2151..2235 CDS range 2310..2442 CDS range 2740..2825 CDS range 3101..3188 CDS range 3317..3435 seq_ini = 1 seq_fin = 5005 i = 3435 last codon bas = aa[tga]gcc last codon lab = EF[DEF]YYY === HSTUBAG === locus = HSTUBAG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 320..535 ignored annotation: /number=1 ignored annotation: misc_feature 320 ignored annotation: /note="put. cap site" ignored annotation: misc_feature 343..371 ignored annotation: /note="pot. regulatory sequence" CDS = 533..535,2064..2286,2435..2583,2888..3868 ignored annotation: /codon_start=1 ignored annotation: /product="alpha-tubulin" ignored annotation: /db_xref="PID:g37492" ignored annotation: /db_xref="SWISS-PROT:P04687" translation = MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTRLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPGHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVHSVEGEGEEEGEEY ignored annotation: intron 536..2063 ignored annotation: /number=1 ignored annotation: repeat_unit 801..810 ignored annotation: /note="imp. direct repeat 1" ignored annotation: repeat_unit 811..836 ignored annotation: /note="imp. direct repeat 2" ignored annotation: repeat_region 837..872 ignored annotation: /note="18 GT repeats" ignored annotation: repeat_unit 877..901 ignored annotation: /note="imp. direct repeat 2'" ignored annotation: repeat_region 902..925 ignored annotation: /note="12 GT repeats" ignored annotation: repeat_unit 937..946 ignored annotation: /note="imp. direct repeat 1'" ignored annotation: exon 2064..2286 ignored annotation: /number=2 ignored annotation: intron 2287..2434 ignored annotation: /number=2 ignored annotation: exon 2435..2583 ignored annotation: /number=3 ignored annotation: intron 2584..2887 ignored annotation: /number=3 ignored annotation: exon 2888..>4063 ignored annotation: /number=4 ignored annotation: polyA_signal 4058..4063 ignored annotation: BASE COUNT 1014 a 942 c 1015 g 1116 t // ** orig/raws/HSTUBAG:136: missing "mRNA" entry === HSU01102 === locus = HSU01102 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="pPB371" ignored annotation: /clone_lib="ATCC 57726" ignored annotation: /map="D11S18 - D11S97" ignored annotation: exon 550..667 ignored annotation: gene 613..4892 ignored annotation: /gene="CC10" CDS = 613..667,3708..3895,4860..4892 ignored annotation: /gene="CC10" ignored annotation: /codon_start=1 ignored annotation: /product="Clara cells 10 kda secretory protein" ignored annotation: /db_xref="PID:g457935" translation = MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGAQLKKLVDTLPQKPRESIIKLMEKIAQSSLCN ignored annotation: intron 668..3707 ignored annotation: /gene="CC10" ignored annotation: repeat_unit 1825..2101 ignored annotation: /gene="CC10" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 2159..2431 ignored annotation: /gene="CC10" ignored annotation: /rpt_family="Alu" ignored annotation: satellite 2948..2962 ignored annotation: /gene="CC10" ignored annotation: /note="Repeat sequence CTTTT, repeated 3 or 4 times, ignored annotation: flanking an Alu repeat" ignored annotation: /rpt_type=tandem ignored annotation: satellite 2980..3011 ignored annotation: /gene="CC10" ignored annotation: /note="TTGC is repeated sequence, repeated 8,9 or 10 ignored annotation: times. flanking an Alu repeat." ignored annotation: /rpt_type=tandem ignored annotation: repeat_unit 3004..3294 ignored annotation: /gene="CC10" ignored annotation: /rpt_family="Alu" ignored annotation: exon 3708..3895 ignored annotation: /gene="CC10" ignored annotation: intron 3896..4859 ignored annotation: /gene="CC10" ignored annotation: repeat_unit 3941..4232 ignored annotation: /gene="CC10" ignored annotation: /note="Human specific Alu repeat. Polymorphic, only ignored annotation: present in 3% of chromosomes." ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 4386..4674 ignored annotation: /gene="CC10" ignored annotation: /rpt_family="Alu" ignored annotation: exon 4860..4995 ignored annotation: BASE COUNT 1232 a 1296 c 1226 g 1241 t // ** orig/raws/HSU01102:160: missing "mRNA" entry === HSU01882 === locus = HSU01882 ignored annotation: /organism="Homo sapiens" ignored annotation: /specific_host="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="clones 33 and 5" ignored annotation: /clone_lib="lambda FIXII library (Stratagene #946203)" ignored annotation: /germline ignored annotation: /sex="male" ignored annotation: /tissue_type="placenta" ignored annotation: repeat_region complement(30..1050) ignored annotation: /standard_name="long interspersed repetitive element" ignored annotation: /citation=[2] ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 1460..2570 ignored annotation: /standard_name="long interspersed repetitive element" ignored annotation: /citation=[2] ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 2380..2540 ignored annotation: /citation=[2] ignored annotation: /rpt_family="MER13" ignored annotation: repeat_region 2510..3568 ignored annotation: /standard_name="long interspersed repetitive element" ignored annotation: /citation=[2] ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(3718..3863) ignored annotation: /citation=[2] ignored annotation: /rpt_family="MER14" ignored annotation: exon 4553..4606 ignored annotation: /citation=[2] ignored annotation: /function="5'untranslated region" ignored annotation: /number=1 ignored annotation: repeat_region complement(5663..5954) ignored annotation: /standard_name="Alu sequence" ignored annotation: /citation=[2] ignored annotation: /rpt_family="Alu family, subfamily Sx" ignored annotation: repeat_region 6042..7175 ignored annotation: /citation=[2] ignored annotation: /rpt_family="MER14" ignored annotation: repeat_region 6203..6371 ignored annotation: /citation=[2] ignored annotation: /rpt_family="MER12" ignored annotation: repeat_region complement(6281..7721) ignored annotation: /standard_name="long interspersed repetitive element" ignored annotation: /citation=[2] ignored annotation: /rpt_family="L1" ignored annotation: exon 7780..8236 ignored annotation: /citation=[2] ignored annotation: /citation=[1] ignored annotation: /function="contains translation start codon at 7829" ignored annotation: /number=2 CDS = 7829..8236,8489..8584,9708..9938,11245..11267,11978..12078,12382..12950 ignored annotation: /codon_start=1 ignored annotation: /product="52 kda component of SS-A/Ro autoantigen" ignored annotation: /db_xref="PID:g665918" translation = MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCAQSRKHRDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHAEFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKLAQQSQALQELISELDRRCHSSALELLQEVIIVLERSESWNLKDLDITSPELRSVCHVPGLKKMLRTCAVHITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPLNIGSQGSTDY ignored annotation: exon 8489..8584 ignored annotation: /citation=[2] ignored annotation: /citation=[1] ignored annotation: /number=3 ignored annotation: repeat_region 9543..9588 ignored annotation: /citation=[2] ignored annotation: /rpt_type=other ignored annotation: /rpt_family="TG dinucleotide repeat" ignored annotation: exon 9708..9938 ignored annotation: /citation=[2] ignored annotation: /citation=[1] ignored annotation: /function="contains coiled-coil/leucine zipper domain" ignored annotation: /number=4 ignored annotation: repeat_region complement(10395..10660) ignored annotation: /standard_name="Alu sequence" ignored annotation: /citation=[2] ignored annotation: /rpt_family="Alu family, subfamily Sp" ignored annotation: exon 11245..11267 ignored annotation: /citation=[2] ignored annotation: /citation=[1] ignored annotation: /number=5 ignored annotation: exon 11978..12078 ignored annotation: /citation=[2] ignored annotation: /citation=[1] ignored annotation: /number=6 ignored annotation: exon 12382..13270 ignored annotation: /citation=[2] ignored annotation: /citation=[1] ignored annotation: /function="contains rfp-like domain and stop codon at ignored annotation: 12948" ignored annotation: /number=7 ignored annotation: BASE COUNT 3641 a 2997 c 3011 g 3621 t // ** orig/raws/HSU01882:350: missing "mRNA" entry === HSU04636 === locus = HSU04636 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="23B and 9C" ignored annotation: /clone_lib="EMBL3 genomic library" ignored annotation: /tissue_type="placenta" ignored annotation: /cell_type="endothelium" mRNA = 832..1017,1818..1934,2055..2198,2852..2995,3426..3607,4340..4423,4543..4789,5072..5358,5860..6007,6494..9419 ignored annotation: 5'UTR 832..965 ignored annotation: gene join(966..1017,1818..1934,2055..2198,2852..2995, ignored annotation: 3426..3607,4340..4423,4543..4789,5072..5358,5860..6007, ignored annotation: 6494..6903) ignored annotation: /gene="hCox-2" CDS = 966..1017,1818..1934,2055..2198,2852..2995,3426..3607,4340..4423,4543..4789,5072..5358,5860..6007,6494..6903 ignored annotation: /gene="hCox-2" ignored annotation: /EC_number="1.14.99.1" ignored annotation: /codon_start=1 ignored annotation: /product="cyclooxygenase-2" ignored annotation: /db_xref="PID:g496976" translation = MLARALLLCAVLALSHTANPCCSHPCQNRGVCMSVGFDQYKCDCTRTGFYGENCSTPEFLTRIKLFLKPTPNTVHYILTHFKGFWNVVNNIPFLRNAIMSYVLTSRSHLIDSPPTYNADYGYKSWEAFSNLSYYTRALPPVPDDCPTPLGVKGKKQLPDSNEIVEKLLLRRKFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPAFTNGLGHGVDLNHIYGETLARQRKLRLFKDGKMKYQIIDGEMYPPTVKDTQAEMIYPPQVPEHLRFAVGQEVFGLVPGLMMYATIWLREHNRVCDVLKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNKQFQYQNRIAAEFNTLYHWHPLLPDTFQIHDQKYNYQQFIYNNSILLEHGITQFVESFTRQIAGRVAGGRNVPPAVQKVSQASIDQSRQMKYQSFNEYRKRFMLKPYESFEELTGEKEMSAELEALYGDIDAVELYPALLVEKPRPDAIFGETMVEVGAPFSLKGLMGNVICSPAYWKPSTFGGEVGFQIINTASIQSLICNNVKGCPFTSFSVPDPELIKTVTINASSSRSGLDDINPTVLLKERSTEL ignored annotation: 3'UTR 6904..9419 ignored annotation: polyA_signal 8830..8835 ignored annotation: polyA_signal 9142..9147 ignored annotation: polyA_signal 9389..9394 ignored annotation: polyA_site 9419 ignored annotation: BASE COUNT 2937 a 1716 c 1710 g 3090 t mRNA range 832..1017 mRNA range 1818..1934 mRNA range 2055..2198 mRNA range 2852..2995 mRNA range 3426..3607 mRNA range 4340..4423 mRNA range 4543..4789 mRNA range 5072..5358 mRNA range 5860..6007 mRNA range 6494..9419 CDS range 966..1017 CDS range 1818..1934 CDS range 2055..2198 CDS range 2852..2995 CDS range 3426..3607 CDS range 4340..4423 CDS range 4543..4789 CDS range 5072..5358 CDS range 5860..6007 CDS range 6494..6903 seq_ini = 1 seq_fin = 9453 i = 6903 last codon bas = tg[tag]aag last codon lab = EF[DEF]YYY === HSU05259 === locus = HSU05259 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="HMB1" ignored annotation: /clone_lib="946205-Stratagene, La Jolla, CA" ignored annotation: /sex="male" ignored annotation: /tissue_type="placenta" ignored annotation: /dev_stage="fetus" ignored annotation: /map="19q13.2-13.3" ignored annotation: /chromosome="19" ignored annotation: promoter 1..666 ignored annotation: protein_bind 287 ignored annotation: /bound_moiety="early B cell factor (EBF)" ignored annotation: protein_bind 476 ignored annotation: /bound_moiety="early B cell factor (EBF)" ignored annotation: protein_bind 612 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 621 ignored annotation: /bound_moiety="Ets-1" ignored annotation: protein_bind 628 ignored annotation: /bound_moiety="SP1" mRNA = <667..781,2385..2684,2926..3044,4059..4127,4255..4758 ignored annotation: exon <667..781 ignored annotation: /number=1 ignored annotation: gene join(703..781,2385..2684,2926..3044,4059..4127,4255..4368) ignored annotation: /gene="MB-1" CDS = 703..781,2385..2684,2926..3044,4059..4127,4255..4368 ignored annotation: /gene="MB-1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g521105" translation = MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSNNANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP ignored annotation: intron 782..2384 ignored annotation: /number=1 ignored annotation: exon 2385..2684 ignored annotation: /gene="MB-1" ignored annotation: /number=2 ignored annotation: intron 2685..2925 ignored annotation: /number=2 ignored annotation: exon 2926..3044 ignored annotation: /gene="MB-1" ignored annotation: /number=3 ignored annotation: intron 3045..4958 ignored annotation: /number=3 ignored annotation: exon 4059..4127 ignored annotation: /gene="MB-1" ignored annotation: /number=4 ignored annotation: intron 4128..4254 ignored annotation: /number=4 ignored annotation: exon 4255..4758 ignored annotation: /number=5 ignored annotation: BASE COUNT 1267 a 1630 c 1616 g 1157 t mRNA range 667..781 mRNA range 2385..2684 mRNA range 2926..3044 mRNA range 4059..4127 mRNA range 4255..4758 CDS range 703..781 CDS range 2385..2684 CDS range 2926..3044 CDS range 4059..4127 CDS range 4255..4368 seq_ini = 1 seq_fin = 5670 i = 4368 last codon bas = cg[tga]cac last codon lab = EF[DEF]YYY === HSU07807 === locus = HSU07807 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 641..646 ignored annotation: gene join(726..756,3320..3385,4404..4495) ignored annotation: /gene="MTIV" CDS = 726..756,3320..3385,4404..4495 ignored annotation: /gene="MTIV" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="metallothionein IV" ignored annotation: /db_xref="PID:g516535" translation = MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSCCP ignored annotation: polyA_site 4655..4659 ignored annotation: BASE COUNT 1361 a 1088 c 1323 g 1067 t // ** orig/raws/HSU07807:121: missing "mRNA" entry === HSU07983 === locus = HSU07983 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="Stratagene Number 961200" ignored annotation: /sex="male" ignored annotation: /tissue_type="brain" ignored annotation: /dev_stage="fetus" ignored annotation: exon 353..389 ignored annotation: gene join(380..389,664..1274) ignored annotation: /gene="GPIb beta" CDS = 380..389,664..1274 ignored annotation: /gene="GPIb beta" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="platelet membrane glycoprotein Ib beta" ignored annotation: /db_xref="PID:g507451" translation = MGSGPRGALSLLLLLLAPPSRPAAGCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLCWGALAAQLALLGLGLLHALLLVLLLCRLRRLRARARARAAARLSLTDPLVAERAGTDES ignored annotation: exon 664..1426 ignored annotation: mat_peptide 729..1271 ignored annotation: /gene="GPIb beta" ignored annotation: /function="subunit of von Willebrand factor receptor" ignored annotation: /product="platelet membrane glycoprotein Ib beta" ignored annotation: BASE COUNT 157 a 514 c 517 g 238 t // ** orig/raws/HSU07983:75: missing "mRNA" entry === HSU08198 === locus = HSU08198 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="9" ignored annotation: /map="9q" ignored annotation: /cell_type="lymphocyte" ignored annotation: /tissue_type="blood" mRNA = 370..582,758..894,1053..1123,1208..1315,1587..1688,1772..1810,1890..2097 ignored annotation: /gene="C8G" ignored annotation: gene 370..2097 ignored annotation: /gene="C8G" CDS = 445..582,758..894,1053..1123,1208..1315,1587..1688,1772..1810,1890..1903 ignored annotation: /gene="C8G" ignored annotation: /codon_start=1 ignored annotation: /product="complement C8 gamma subunit precursor" ignored annotation: /db_xref="PID:g494946" translation = MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFCEAADQFHVLDEVRR ignored annotation: mat_peptide join(505..582,758..894,1053..1123,1208..1315,1587..1688, ignored annotation: 1772..1810,1890..1900) ignored annotation: /gene="C8G" ignored annotation: /product="complement C8 gamma subunit" ignored annotation: BASE COUNT 400 a 730 c 778 g 436 t mRNA range 370..582 mRNA range 758..894 mRNA range 1053..1123 mRNA range 1208..1315 mRNA range 1587..1688 mRNA range 1772..1810 mRNA range 1890..2097 CDS range 445..582 CDS range 758..894 CDS range 1053..1123 CDS range 1208..1315 CDS range 1587..1688 CDS range 1772..1810 CDS range 1890..1903 seq_ini = 1 seq_fin = 2344 i = 1903 last codon bas = gg[tga]ggc last codon lab = EF[DEF]YYY === HSU09954 === locus = HSU09954 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="P-1 clone p1180, and subclones pL9H-1, pL9H-2, ignored annotation: pL9H-3" ignored annotation: /clone_lib="Human genomic P-1 library (Genome Systems, St. ignored annotation: Louis, MO)" ignored annotation: /chromosome="4" ignored annotation: /map="4p13" ignored annotation: promoter 1..573 ignored annotation: /note="5' flanking region, putative promoter" ignored annotation: misc_signal complement(43..47) ignored annotation: /note="CACCC box" ignored annotation: protein_bind complement(167..173) ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_signal 292..297 ignored annotation: /note="CACCC box" ignored annotation: protein_bind 317..322 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_signal 326..330 ignored annotation: /note="CACCC box" ignored annotation: misc_signal complement(340..344) ignored annotation: /note="CACCC box" ignored annotation: exon 574..600 ignored annotation: /number=1 ignored annotation: intron 601..1051 ignored annotation: /note="intron A" ignored annotation: exon 1052..1098 ignored annotation: /number=2 CDS = 1053..1098,1183..1298,1811..1906,2954..3086,4548..4628,4843..4949 ignored annotation: /codon_start=1 ignored annotation: /product="ribosomal protein L9" ignored annotation: /db_xref="PID:g607793" translation = MKTILSNQTVEIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE ignored annotation: intron 1099..1298 ignored annotation: /note="intron B" ignored annotation: exon 1183..1298 ignored annotation: /number=3 ignored annotation: intron 1299..1810 ignored annotation: /note="intron C" ignored annotation: exon 1811..1906 ignored annotation: /number=4 ignored annotation: intron 1907..2953 ignored annotation: /note="intron D" ignored annotation: repeat_region 2104..2249 ignored annotation: /rpt_family="Alu repeat" ignored annotation: exon 2954..3086 ignored annotation: /number=5 ignored annotation: intron 3087..4547 ignored annotation: /note="intron E" ignored annotation: repeat_region 3962..4048 ignored annotation: /rpt_family="Alu repeat" ignored annotation: repeat_region 4206..4433 ignored annotation: /rpt_family="Alu repeat" ignored annotation: exon 4548..4628 ignored annotation: /number=6 ignored annotation: intron 4629..4842 ignored annotation: /note="intron F" ignored annotation: exon 4843..4959 ignored annotation: /number=7 ignored annotation: intron 4960..5266 ignored annotation: /note="intron G" ignored annotation: exon 5267..5359 ignored annotation: /number=8 ignored annotation: polyA_signal 5333..5338 ignored annotation: misc_feature 5360..5542 ignored annotation: /note="3' flanking region" ignored annotation: BASE COUNT 1471 a 1110 c 1230 g 1731 t // ** orig/raws/HSU09954:189: missing "mRNA" entry === HSU10307 === locus = HSU10307 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="human genome library" ignored annotation: /cell_type="leukocyte" ignored annotation: /tissue_type="blood" ignored annotation: gene 2124..4176 ignored annotation: /gene="IL13" CDS = 2124..2255,3312..3365,3618..3722,4072..4176 ignored annotation: /gene="IL13" ignored annotation: /codon_start=1 ignored annotation: /product="interleukin 13" ignored annotation: /db_xref="PID:g1127548" translation = MALLLTTVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKRPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGFSSLHVRDTKIEVAQFVKDLLLHLKKLFREGRFN ignored annotation: BASE COUNT 1023 a 1444 c 1305 g 968 t // ** orig/raws/HSU10307:120: missing "mRNA" entry === HSU12421 === locus = HSU12421 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="22q13.3" ignored annotation: intron <1..99 ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: exon 100..310 ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: /product="mitochondrial benzodiazepine receptor" ignored annotation: 5'UTR 100..128 ignored annotation: gene 129..3872 ignored annotation: /gene="MBR" CDS = 129..310,1941..2079,3684..3872 ignored annotation: /gene="MBR" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="mitochondrial benzodiazepine receptor" ignored annotation: /db_xref="PID:g529946" translation = MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE ignored annotation: intron 311..1940 ignored annotation: /gene="MBR" ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: exon 1941..2079 ignored annotation: /gene="MBR" ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: /product="mitochondrial benzodiazepine receptor" ignored annotation: intron 2080..3683 ignored annotation: /gene="MBR" ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: repeat_region 2401..3306 ignored annotation: /note="4 Alus" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 3497..3581 ignored annotation: /rpt_family="MIR" ignored annotation: exon 3684..4122 ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: /product="mitochondrial benzodiazepine receptor" ignored annotation: 3'UTR 3873..4122 ignored annotation: BASE COUNT 794 a 1246 c 1221 g 997 t // ** orig/raws/HSU12421:143: missing "mRNA" entry === HSU12709 === locus = HSU12709 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="4" ignored annotation: /map="4q13-q21" ignored annotation: exon 289..493 ignored annotation: /number=1 CDS = 385..493,628..760,871..954,1311..1329 ignored annotation: /note="neutrophil-activating peptide" ignored annotation: /codon_start=1 ignored annotation: /product="ENA-78 prepeptide" ignored annotation: /db_xref="PID:g684922" translation = MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN ignored annotation: exon 628..760 ignored annotation: /number=2 ignored annotation: exon 871..954 ignored annotation: /number=3 ignored annotation: exon 1311..>1329 ignored annotation: /number=4 ignored annotation: BASE COUNT 544 a 478 c 467 g 691 t // ** orig/raws/HSU12709:82: missing "mRNA" entry === HSU16720 === locus = HSU16720 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: repeat_region 1144..1447 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" mRNA = <4057..4221,5088..5147,5438..5590,6601..6666,7742..8868 ignored annotation: gene join(4057..4221,5088..5147,5438..5590,6601..6666, ignored annotation: 7742..7834) ignored annotation: /gene="IL10" CDS = 4057..4221,5088..5147,5438..5590,6601..6666,7742..7834 ignored annotation: /gene="IL10" ignored annotation: /codon_start=1 ignored annotation: /product="interleukin 10" ignored annotation: /db_xref="PID:g1041813" translation = MHSSALLCCLVLLTGVRASPGQGTQSENSCTHFPGNLPNMLRDLRDAFSRVKTFFQMKDQLDNLLLKESLLEDFKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIRN ignored annotation: repeat_unit 8427..8440 ignored annotation: repeat_region 8441..8741 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 8742..8755 ignored annotation: BASE COUNT 2425 a 2137 c 2075 g 2231 t mRNA range 4057..4221 mRNA range 5088..5147 mRNA range 5438..5590 mRNA range 6601..6666 mRNA range 7742..8868 CDS range 4057..4221 CDS range 5088..5147 CDS range 5438..5590 CDS range 6601..6666 CDS range 7742..7834 seq_ini = 1 seq_fin = 8868 i = 7834 last codon bas = ac[tga]gac last codon lab = EF[DEF]YYY === HSU17969 === locus = HSU17969 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /sex="female" ignored annotation: /tissue_type="placenta" ignored annotation: exon 1..125 ignored annotation: /number=1 ignored annotation: intron 126..1974 ignored annotation: /number=1 ignored annotation: exon 1975..2159 ignored annotation: /number=2 CDS = 1995..2159,3372..3476,3704..3835,3932..3994 ignored annotation: /codon_start=1 ignored annotation: /function="initiation factor" ignored annotation: /evidence=experimental ignored annotation: /product="eIF-5A" ignored annotation: /db_xref="PID:g602245" translation = MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK ignored annotation: intron 2160..3371 ignored annotation: /number=2 ignored annotation: exon 3372..3476 ignored annotation: /number=3 ignored annotation: intron 3477..3703 ignored annotation: /number=3 ignored annotation: exon 3704..3835 ignored annotation: /number=4 ignored annotation: intron 3836..3931 ignored annotation: /number=4 ignored annotation: exon 3932..4005 ignored annotation: /number=5 ignored annotation: intron 4006..4174 ignored annotation: /number=5 ignored annotation: exon 4175..4862 ignored annotation: /number=6 ignored annotation: BASE COUNT 903 a 1318 c 1313 g 1328 t // ** orig/raws/HSU17969:142: missing "mRNA" entry === HSU19765 === locus = HSU19765 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda 911; lambda 10A5" ignored annotation: /sex="male" ignored annotation: /tissue_type="placenta; peripheral blood" ignored annotation: /dev_stage="newborn" ignored annotation: exon 202..1036 ignored annotation: /number=1 ignored annotation: exon 4393..4530 ignored annotation: /number=2 CDS = 4407..4530,4712..4804,4974..5172,5679..5796 ignored annotation: /codon_start=1 ignored annotation: /product="nucleic acid binding protein" ignored annotation: /db_xref="PID:g790571" translation = MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA ignored annotation: exon 4712..4804 ignored annotation: /number=3 ignored annotation: exon 4974..5172 ignored annotation: /number=4 ignored annotation: exon 5679..6913 ignored annotation: /number=5 ignored annotation: BASE COUNT 1786 a 1478 c 1670 g 1979 t // ** orig/raws/HSU19765:166: missing "mRNA" entry === HSU19816 === locus = HSU19816 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" mRNA = 143..711,1675..>2417 ignored annotation: /note="TTF-1" ignored annotation: /product="thyroid transcription factor-1" ignored annotation: exon 143..711 ignored annotation: /number=1 ignored annotation: 5'UTR 143..338 CDS = 339..711,1675..2417 ignored annotation: /note="TTF-1" ignored annotation: /codon_start=1 ignored annotation: /product="thyroid transcription factor-1" ignored annotation: /db_xref="PID:g767833" translation = MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW ignored annotation: exon 1675..2417 ignored annotation: /number=2 ignored annotation: BASE COUNT 676 a 1003 c 1020 g 594 t mRNA range 143..711 mRNA range 1675..2417 CDS range 339..711 CDS range 1675..2417 seq_ini = 1 seq_fin = 3293 i = 2417 last codon bas = gg[tga]gag last codon lab = EF[DEF]NNN === HSU19906 === locus = HSU19906 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="library LL12NL01, Charon 40, ATCC library # ignored annotation: 57782" ignored annotation: /chromosome="12" ignored annotation: prim_transcript 28..>5479 ignored annotation: /evidence=experimental ignored annotation: gene join(2001..2970,5193..5479) ignored annotation: /gene="AVPR1" CDS = 2001..2970,5193..5479 ignored annotation: /gene="AVPR1" ignored annotation: /codon_start=1 ignored annotation: /product="arginine vasopressin receptor 1" ignored annotation: /db_xref="PID:g755464" translation = MRLSAGPDAGPSGNSSPWWPLATGAGNTSREAEALGEGNGPPRDVRNEELAKLEIAVLAVTFAVAVLGNSSVLLALHRTPRKTSRMHLFIRHLSLADLAVAFFQVLPQMCWDITYRFRGPDWLCRVVKHLQVFGMFASAYMLVVMTADRYIAVCHPLKTLQQPARRSRLMIAAAWVLSFVLSTPQYFVFSMIEVNNVTKARDCWATFIQPWGSRAYVTWMTGGIFVAPVVILGTCYGFICYNIWCNVRGKTASRQSKGAEQAGVAFQKGFLLAPCVSSVKSISRAKIRTVKMTFVIVTAYIVCWAPFFIIQMWSVWDPMSVWTESENPTITITALLGSLNSCCNPWIYMFFSGHLLQDCVQSFPCCQNMKEKFNKEDTDSMSRRQTFYSNNRSPTNSTGMWKDSPKSSKSIKFIPVST ignored annotation: misc_feature 2163..2219 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region I" ignored annotation: misc_feature 2277..2324 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region II" ignored annotation: misc_feature 2385..2450 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region III" ignored annotation: misc_feature 2526..2570 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region IV" ignored annotation: misc_feature 2652..2720 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region V" ignored annotation: misc_feature 2883..2954 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region VI" ignored annotation: misc_feature 5228..5293 ignored annotation: /gene="AVPR1" ignored annotation: /note="encodes transmembrane region VII" ignored annotation: BASE COUNT 1804 a 1411 c 1401 g 1786 t // ** orig/raws/HSU19906:177: missing "mRNA" entry === HSU20325 === locus = HSU20325 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="ATCC 37385" ignored annotation: /chromosome="5" ignored annotation: TATA_signal 72..77 ignored annotation: exon 103..280 ignored annotation: /number=1 ignored annotation: 5'UTR 103..121 ignored annotation: gene join(122..280,706..789,1329..1436) ignored annotation: /gene="hCART" CDS = 122..280,706..789,1329..1436 ignored annotation: /gene="hCART" ignored annotation: /note="psychomotor stimulant regulated protein; CART" ignored annotation: /codon_start=1 ignored annotation: /product="cocaine and amphetamine regulated transcript" ignored annotation: /db_xref="PID:g665579" translation = MESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSKRVPIYEKKYGQVPMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLKCL ignored annotation: intron 281..705 ignored annotation: /number=1 ignored annotation: exon 706..789 ignored annotation: /gene="hCART" ignored annotation: /number=2 ignored annotation: intron 790..1328 ignored annotation: /number=2 ignored annotation: exon 1329..1866 ignored annotation: /number=3 ignored annotation: 3'UTR 1437..1866 ignored annotation: polyA_signal 1846..1851 ignored annotation: polyA_site 1867 ignored annotation: BASE COUNT 631 a 574 c 608 g 670 t // ** orig/raws/HSU20325:100: missing "mRNA" entry === HSU20499 === locus = HSU20499 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="ICRFP700O01102" ignored annotation: /clone_lib="No.700 P1 human genomic DNA library of Fiona ignored annotation: Francis" ignored annotation: /chromosome="16" ignored annotation: /map="16p11.2" ignored annotation: /cell_line="4X" ignored annotation: 5'UTR join(624..736,905..992,4357..4360) ignored annotation: /note="alternative 5'-UTR exists" ignored annotation: exon 624..736 ignored annotation: /number=1 ignored annotation: exon 905..992 ignored annotation: /number=2 ignored annotation: 5'UTR join(2848..2960,4357..4360) ignored annotation: /note="alternative 5'-UTR" ignored annotation: exon 2848..2960 ignored annotation: /number=3 ignored annotation: exon 4357..4508 ignored annotation: /number=4 ignored annotation: gene join(4361..4508,4613..4738,4828..4925,6322..6448, ignored annotation: 6544..6638,7137..7317,7440..7552) ignored annotation: /gene="STM" CDS = 4361..4508,4613..4738,4828..4925,6322..6448,6544..6638,7137..7317,7440..7552 ignored annotation: /gene="STM" ignored annotation: /codon_start=1 ignored annotation: /product="thermolabile phenol sulfotransferase" ignored annotation: /db_xref="PID:g736379" translation = MELIQDTSRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLINTYPKSGTTWVSQILDMIYQGGDLEKCNRAPIYVRVPFLEVNDPGEPSGLETLKDTPPPRLIKSHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHFHRMEKAHPEPGTWDSFLEKFMAGEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKKNPMTNYTTVPQELMDHSISPFMRKGMAGDWKTTFTVAQNERFDADYAEKMAGCSLSFRSEL ignored annotation: exon 4613..4738 ignored annotation: /gene="STM" ignored annotation: /number=5 ignored annotation: exon 4828..4925 ignored annotation: /gene="STM" ignored annotation: /number=6 ignored annotation: exon 6322..6448 ignored annotation: /gene="STM" ignored annotation: /number=7 ignored annotation: exon 6544..6638 ignored annotation: /gene="STM" ignored annotation: /number=8 ignored annotation: exon 7137..7317 ignored annotation: /gene="STM" ignored annotation: /number=9 ignored annotation: exon 7440..7938 ignored annotation: /number=10 ignored annotation: 3'UTR 7553..7938 ignored annotation: polyA_signal 7919..7923 ignored annotation: polyA_site 7939 ignored annotation: BASE COUNT 1825 a 2351 c 2322 g 1949 t // ** orig/raws/HSU20499:221: missing "mRNA" entry === HSU20758 === locus = HSU20758 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="4" ignored annotation: /map="4q13" ignored annotation: 5'UTR join(126..212,360..373) mRNA = 126..212,360..427,537..575,884..964,1232..1273,1597..1920,2305..3143 ignored annotation: /product="osteopontin" ignored annotation: exon 126..212 ignored annotation: /note="exon 1 is not translated" ignored annotation: /number=1 ignored annotation: intron 213..359 ignored annotation: /number=1 ignored annotation: exon 360..427 ignored annotation: /number=2 CDS = 374..427,537..575,884..964,1232..1273,1597..1920,2305..2709 ignored annotation: /codon_start=1 ignored annotation: /product="osteopontin" ignored annotation: /db_xref="PID:g1001963" translation = MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNAVSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN ignored annotation: intron 428..536 ignored annotation: /number=2 ignored annotation: exon 537..575 ignored annotation: /number=3 ignored annotation: intron 576..883 ignored annotation: /number=3 ignored annotation: exon 884..964 ignored annotation: /number=4 ignored annotation: intron 965..1231 ignored annotation: /number=4 ignored annotation: exon 1232..1273 ignored annotation: /number=5 ignored annotation: intron 1274..1596 ignored annotation: /number=5 ignored annotation: exon 1597..1920 ignored annotation: /number=6 ignored annotation: intron 1921..2304 ignored annotation: /number=6 ignored annotation: exon 2305..3143 ignored annotation: /number=7 ignored annotation: 3'UTR 2710..3143 ignored annotation: BASE COUNT 983 a 601 c 628 g 931 t mRNA range 126..212 mRNA range 360..427 mRNA range 537..575 mRNA range 884..964 mRNA range 1232..1273 mRNA range 1597..1920 mRNA range 2305..3143 CDS range 374..427 CDS range 537..575 CDS range 884..964 CDS range 1232..1273 CDS range 1597..1920 CDS range 2305..2709 seq_ini = 1 seq_fin = 3143 i = 2709 last codon bas = at[taa]aag last codon lab = EF[DEF]YYY === HSU20982 === locus = HSU20982 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="HIGFBP43" ignored annotation: /clone_lib="pWE15 cosmid library of Clontech, Palo Alto, ignored annotation: CA" ignored annotation: /sex="female" ignored annotation: /tissue_type="placenta" ignored annotation: promoter 1..396 mRNA = 397..1030,1579..1736,2525..2659,2760..>3992 ignored annotation: /gene="IGFBP4" ignored annotation: 5'UTR 397..681 ignored annotation: /gene="IGFBP4" ignored annotation: gene join(397..1030,1579..1736,2525..2659,2760..>3992) ignored annotation: /gene="IGFBP4" ignored annotation: exon 397..1030 ignored annotation: /gene="IGFBP4" CDS = 682..1030,1579..1736,2525..2659,2760..2894 ignored annotation: /gene="IGFBP4" ignored annotation: /note="IGF binding protein-4" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="insulin-like growth factor binding protein-4" ignored annotation: /db_xref="PID:g695254" translation = MLPLCLVAALLLAAGPGPSLGDEAIHCPPCSEEKLARCRPPVGCEELVREAGCGCCATCALGLGMPCGVYTPRCGSGLRCYPPRGVEKPLHTLMHGQGVCMELAEIEAIQESLQPSDKDEGDHPNNSFSPCSAHDRRCLQKHFAKIRDRSTSGGKMKVNGAPREDARPVPQGSCQSELHRALERLAASQSRTHEDLYFIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGLEPKGELDCHQLADSFRE ignored annotation: intron 1031..1578 ignored annotation: exon 1579..1736 ignored annotation: /gene="IGFBP4" ignored annotation: intron 1737..2524 ignored annotation: exon 2525..2659 ignored annotation: /gene="IGFBP4" ignored annotation: intron 2660..2759 ignored annotation: exon 2760..>3992 ignored annotation: /gene="IGFBP4" ignored annotation: 3'UTR 2895..>3992 ignored annotation: /gene="IGFBP4" ignored annotation: BASE COUNT 833 a 1445 c 1349 g 992 t mRNA range 397..1030 mRNA range 1579..1736 mRNA range 2525..2659 mRNA range 2760..3992 CDS range 682..1030 CDS range 1579..1736 CDS range 2525..2659 CDS range 2760..2894 seq_ini = 1 seq_fin = 4619 i = 2894 last codon bas = ag[tga]ggc last codon lab = EF[DEF]YYY === HSU22027 === locus = HSU22027 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: 5'UTR 782..790 ignored annotation: exon 791..970 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=1 ignored annotation: gene 791..6489 ignored annotation: /gene="CYP2A6V2" CDS = 791..970,1237..1399,2115..2264,2499..2659,3207..3383,4257..4398,4873..5060,5577..5718,6308..6489 ignored annotation: /gene="CYP2A6V2" ignored annotation: /codon_start=1 ignored annotation: /product="cytochrome P450" ignored annotation: /db_xref="PID:g1008462" translation = MLASGMLLVALLACLTVMVLMSVWQQRKSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLLRFAIATLRDFGVGKRGIEERIQEESGFLIEAIRSTHGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLDPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLMMSTLNLFIAGTETVSTTLHYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGIEVFPMLGSVLRDLRFFSNPRDFNPQHFLGEKGQFKKRDAFVPFSIRKRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDIDVSPKHVGFATIPRNYTMSFLPR ignored annotation: exon 1237..1399 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=2 ignored annotation: exon 2115..2264 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=3 ignored annotation: exon 2499..2659 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=4 ignored annotation: exon 3207..3383 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=5 ignored annotation: exon 4257..4398 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=6 ignored annotation: exon 4873..5060 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=7 ignored annotation: exon 5577..5718 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=8 ignored annotation: exon 6308..6489 ignored annotation: /gene="CYP2A6V2" ignored annotation: /number=9 ignored annotation: 3'UTR 6490..6744 ignored annotation: BASE COUNT 1646 a 2196 c 1746 g 1627 t // ** orig/raws/HSU22027:196: missing "mRNA" entry === HSU23143 === locus = HSU23143 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="12" ignored annotation: /map="12q13" CDS = 202..369,845..924,1077..1277,1575..1656,1817..1939,2068..2207,2541..2706,2924..3023,3110..3373,3497..3624 ignored annotation: /codon_start=1 ignored annotation: /product="mitochondrial serine hydroxymethyltransferase" ignored annotation: /db_xref="PID:g746436" translation = MAIRAQHSNAAQTQTGEANRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDEH ignored annotation: BASE COUNT 759 a 1042 c 1168 g 900 t // ** orig/raws/HSU23143:107: missing "mRNA" entry === HSU23853 === locus = HSU23853 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="2" ignored annotation: /map="2p11.2-q11" ignored annotation: 5'UTR 1..85 ignored annotation: /gene="PAC1" ignored annotation: gene join(86..473,558..679,1067..1286,1403..1617) ignored annotation: /gene="PAC1" CDS = 86..473,558..679,1067..1286,1403..1617 ignored annotation: /gene="PAC1" ignored annotation: /note="corresponding PAC1 mRNA sequence can be located in ignored annotation: GenBank Accession Number L11329" ignored annotation: /codon_start=1 ignored annotation: /product="dual-specific phosphoprotein phosphatase" ignored annotation: /db_xref="PID:g775212" translation = MGLEAARELECAALGTLLRDPREAERTLLLDCRPFLAFCRRHVRAARPVPWNALLRRRARGPPAAVLACLLPDRALRTRLVRGELARAVVLDEGSASVAELRPDSPAHVLLAALLHETRAGPTAVYFLRGGFDGFQGCCPDLCSEAPAPALPPTGDKTSRSDSRAPVYDQGGPVEILPYLFLGSCSHSSDLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHCQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRRGVISPNFSFMGQLLQFETQVLCH ignored annotation: 3'UTR 1618..2263 ignored annotation: /gene="PAC1" ignored annotation: BASE COUNT 369 a 729 c 720 g 478 t // ** orig/raws/HSU23853:89: missing "mRNA" entry === HSU24685 === locus = HSU24685 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="E11" ignored annotation: /chromosome="14" ignored annotation: /map="14q32.33" ignored annotation: /tissue_type="fetal spleen" ignored annotation: /cell_type="B lymphocyte" ignored annotation: gene join(1..46,130..443) ignored annotation: /gene="VH4" ignored annotation: sig_peptide join(1..46,130..140) ignored annotation: /gene="VH4" ignored annotation: /note="VH4 leader-signal peptide" CDS = 1..46,130..443 ignored annotation: /gene="VH4" ignored annotation: /note="VH4-63 non-productive rearrangement" ignored annotation: /codon_start=1 ignored annotation: /product="immunoglobulin heavy chain variable region" ignored annotation: /db_xref="PID:g799243" translation = MKHLWFFLLLVAAPRWVLSQVQLQQWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARAGA ignored annotation: intron 47..129 ignored annotation: mat_peptide 141..443 ignored annotation: /gene="VH4" ignored annotation: /note="VH4-63 non-productive rearrangement" ignored annotation: /product="immunoglobulin heavy chain variable region" ignored annotation: misc_feature 432..505 ignored annotation: /note="D-J region frameshift" ignored annotation: BASE COUNT 105 a 136 c 147 g 117 t // ** orig/raws/HSU24685:65: missing "mRNA" entry === HSU25816 === locus = HSU25816 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="11p15.2-p15.5" ignored annotation: /haplotype="23" ignored annotation: /tissue_type="placenta" ignored annotation: 5'UTR 1060..1084 ignored annotation: gene join(1085..1316,1456..1610,1822..1886,1971..2085, ignored annotation: 2263..2352) ignored annotation: /gene="TAFII30" CDS = 1085..1316,1456..1610,1822..1886,1971..2085,2263..2352 ignored annotation: /gene="TAFII30" ignored annotation: /note="TBP-associated factor II 30" ignored annotation: /codon_start=1 ignored annotation: /product="TATA-binding protein associated factor 30 kDa ignored annotation: subunit" ignored annotation: /db_xref="PID:g2193966" translation = MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT ignored annotation: 3'UTR 2353..2434 ignored annotation: polyA_signal 2411..2416 ignored annotation: BASE COUNT 526 a 739 c 755 g 585 t // ** orig/raws/HSU25816:97: missing "mRNA" entry === HSU25826 === locus = HSU25826 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="YAC B209D7, Cosmid 52, pDEL5.5" ignored annotation: /clone_lib="CGM1 library from the Washington University ignored annotation: School of Medicine" ignored annotation: /chromosome="6" ignored annotation: /map="6p23.1" ignored annotation: /sex="male" ignored annotation: /haplotype="A3 B8 C- DR3 DQw2 DRw52 and A29 Bw65 C- DR7 ignored annotation: DQw2 DP4" ignored annotation: /cell_line="B lymphoblastoid" ignored annotation: /tissue_type="blood" ignored annotation: /dev_stage="adult" ignored annotation: gene join(933..1170,2905..3463,3929..4211) ignored annotation: /gene="SC1" ignored annotation: exon <933..1170 ignored annotation: /gene="SC1" CDS = 933..1170,2905..3463,3929..4211 ignored annotation: /gene="SC1" ignored annotation: /codon_start=1 ignored annotation: /product="transcription factor SC1" ignored annotation: /db_xref="PID:g833833" translation = MLPCFQLLRIGGGRGGDLYTFHPPAGVGCTYRLGHRADLCDVALRPQQEPGLISGIHAELHAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFMFQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEPPENPPPVLMEPRKKLRVDKAPLTPTGNARGRPRKYPVSAPMAPPAVGAGSPVQLLVAACPRKRQWPGFSVMAVTSGSMWPVLAAASRLPGRPTSDAQGAGLAFSLRSTAKAPSDTPAHE ignored annotation: conflict 1012 ignored annotation: /gene="SC1" ignored annotation: /citation=[2] ignored annotation: /replace="c" ignored annotation: intron 1171..2904 ignored annotation: repeat_region 1937..2238 ignored annotation: /rpt_family="Alu" ignored annotation: exon 2906..3463 ignored annotation: /gene="SC1" ignored annotation: conflict 3033..3035 ignored annotation: /gene="SC1" ignored annotation: /citation=[2] ignored annotation: /replace="aac" ignored annotation: conflict 3243 ignored annotation: /gene="SC1" ignored annotation: /citation=[2] ignored annotation: /replace="a" ignored annotation: intron 3464..3928 ignored annotation: exon 3929..>4211 ignored annotation: /gene="SC1" ignored annotation: conflict 3933..3934 ignored annotation: /gene="SC1" ignored annotation: /citation=[2] ignored annotation: /replace="cg" ignored annotation: conflict 4000..4002 ignored annotation: /gene="SC1" ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: conflict 4176..4177 ignored annotation: /gene="SC1" ignored annotation: /citation=[2] ignored annotation: /replace="cg" ignored annotation: BASE COUNT 1376 a 1368 c 1497 g 1281 t // ** orig/raws/HSU25826:186: missing "mRNA" entry === HSU26425 === locus = HSU26425 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="11q13" ignored annotation: exon 2641..2955 ignored annotation: /number=1 ignored annotation: 5'UTR 2641..2856 ignored annotation: gene 2857..18807 ignored annotation: /gene="PLCB3" CDS = 2857..2955,5635..5712,5968..6036,6118..6258,6454..6533,6616..6669,6761..6836,6943..7043,7599..7765,7841..7987,9718..9958,10130..10214,10303..10489,11277..11482,12646..12742,12827..12911,13198..13322,13653..13807,13893..14054,14744..14843,14937..15041,15267..15358,16201..16354,16442..16477,16560..16752,17137..17290,17377..17453,17566..17655,17746..17803,18436..18522,18604..18807 ignored annotation: /gene="PLCB3" ignored annotation: /note="1-phosphatidylinositol-4,5-bisphosphate ignored annotation: phosphodiesterase beta 3" ignored annotation: /codon_start=1 ignored annotation: /product="phospholipase C-beta-3" ignored annotation: /db_xref="PID:g836665" translation = MAGAQPGVHALQLEPPTVVETLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMNILAQNASRNTFLRKAYTKLKLQVNQDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCLRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKKRHRPSAGGPDSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSCPGLSNGEEVGLEKPSLEPQKSLGDEGLNRGPYVLGPADREDEEEDEEEEEQTDPKKPTTDEGTASSEVNATEEMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIPDDHQDYAEALINPIKHVSLMDQRARQLAALIGESEAQAGQETCQDTQSQQLGSQPSSNPTPSPLDASPRRPPGPTTSPASTSLSSPGQRDDLIASILSEVAPTPLDELRGHKALVKLRSRQERDLRELRKKHQRKAVTLTRRLLDGLAQAQAEGRCRLRPGALGGAADVEDTKEGEDEAKRYQEFQNRQVQSLLELREAQVDAEAQRRLEHLRQALQRLREVVLDANTTQFKRLKEMNEREKKELQKILDRKRHNSISEAKMRDKHKKEAELTEINRRHITESVNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQECQEQRARLPQEIRRSLLGEMPEGLGDGPLVACASNGHAPGSSGHLSGADSESQEENTQL ignored annotation: intron 2956..5634 ignored annotation: /gene="PLCB3" ignored annotation: /number=1 ignored annotation: exon 5635..5712 ignored annotation: /gene="PLCB3" ignored annotation: /number=2 ignored annotation: intron 5713..5967 ignored annotation: /gene="PLCB3" ignored annotation: /number=2 ignored annotation: exon 5968..6036 ignored annotation: /gene="PLCB3" ignored annotation: /number=3 ignored annotation: intron 6037..6117 ignored annotation: /gene="PLCB3" ignored annotation: /number=3 ignored annotation: exon 6118..6258 ignored annotation: /gene="PLCB3" ignored annotation: /number=4 ignored annotation: intron 6259..6453 ignored annotation: /gene="PLCB3" ignored annotation: /number=4 ignored annotation: exon 6454..6533 ignored annotation: /gene="PLCB3" ignored annotation: /number=5 ignored annotation: intron 6534..6615 ignored annotation: /gene="PLCB3" ignored annotation: /number=5 ignored annotation: exon 6616..6669 ignored annotation: /gene="PLCB3" ignored annotation: /number=6 ignored annotation: intron 6670..6760 ignored annotation: /gene="PLCB3" ignored annotation: /number=6 ignored annotation: exon 6761..6836 ignored annotation: /gene="PLCB3" ignored annotation: /number=7 ignored annotation: intron 6837..6942 ignored annotation: /gene="PLCB3" ignored annotation: /number=7 ignored annotation: exon 6943..7043 ignored annotation: /gene="PLCB3" ignored annotation: /number=8 ignored annotation: intron 7044..7598 ignored annotation: /gene="PLCB3" ignored annotation: /number=8 ignored annotation: exon 7599..7765 ignored annotation: /gene="PLCB3" ignored annotation: /number=9 ignored annotation: intron 7766..7840 ignored annotation: /gene="PLCB3" ignored annotation: /number=9 ignored annotation: exon 7841..7987 ignored annotation: /gene="PLCB3" ignored annotation: /number=10 ignored annotation: intron 7988..9717 ignored annotation: /gene="PLCB3" ignored annotation: /number=10 ignored annotation: exon 9718..9958 ignored annotation: /gene="PLCB3" ignored annotation: /number=11 ignored annotation: intron 9959..10129 ignored annotation: /gene="PLCB3" ignored annotation: /number=11 ignored annotation: exon 10130..10214 ignored annotation: /gene="PLCB3" ignored annotation: /number=12 ignored annotation: intron 10215..10302 ignored annotation: /gene="PLCB3" ignored annotation: /number=12 ignored annotation: exon 10303..10489 ignored annotation: /gene="PLCB3" ignored annotation: /number=13 ignored annotation: intron 10490..11276 ignored annotation: /gene="PLCB3" ignored annotation: /number=13 ignored annotation: exon 11277..11482 ignored annotation: /gene="PLCB3" ignored annotation: /number=14 ignored annotation: intron 11483..12645 ignored annotation: /gene="PLCB3" ignored annotation: /number=14 ignored annotation: exon 12646..12742 ignored annotation: /gene="PLCB3" ignored annotation: /number=15 ignored annotation: intron 12743..12826 ignored annotation: /gene="PLCB3" ignored annotation: /number=15 ignored annotation: exon 12827..12911 ignored annotation: /gene="PLCB3" ignored annotation: /number=16 ignored annotation: intron 12912..13917 ignored annotation: /gene="PLCB3" ignored annotation: /number=16 ignored annotation: exon 13198..13322 ignored annotation: /gene="PLCB3" ignored annotation: /number=17 ignored annotation: intron 13323..13652 ignored annotation: /gene="PLCB3" ignored annotation: /number=17 ignored annotation: exon 13653..13807 ignored annotation: /gene="PLCB3" ignored annotation: /number=18 ignored annotation: intron 13808..13892 ignored annotation: /gene="PLCB3" ignored annotation: /number=18 ignored annotation: exon 13893..14054 ignored annotation: /gene="PLCB3" ignored annotation: /number=19 ignored annotation: intron 14055..14743 ignored annotation: /gene="PLCB3" ignored annotation: /number=19 ignored annotation: exon 14744..14843 ignored annotation: /gene="PLCB3" ignored annotation: /number=20 ignored annotation: intron 14844..14936 ignored annotation: /gene="PLCB3" ignored annotation: /number=20 ignored annotation: exon 14937..15041 ignored annotation: /gene="PLCB3" ignored annotation: /number=21 ignored annotation: intron 15042..15266 ignored annotation: /gene="PLCB3" ignored annotation: /number=21 ignored annotation: exon 15267..15358 ignored annotation: /gene="PLCB3" ignored annotation: /number=22 ignored annotation: intron 15359..16200 ignored annotation: /gene="PLCB3" ignored annotation: /number=22 ignored annotation: exon 16201..16354 ignored annotation: /gene="PLCB3" ignored annotation: /number=23 ignored annotation: intron 16355..16441 ignored annotation: /gene="PLCB3" ignored annotation: /number=23 ignored annotation: exon 16442..16477 ignored annotation: /gene="PLCB3" ignored annotation: /number=24 ignored annotation: intron 16478..16559 ignored annotation: /gene="PLCB3" ignored annotation: /number=24 ignored annotation: exon 16560..16752 ignored annotation: /gene="PLCB3" ignored annotation: /number=25 ignored annotation: intron 16753..17136 ignored annotation: /gene="PLCB3" ignored annotation: /number=25 ignored annotation: exon 17137..17290 ignored annotation: /gene="PLCB3" ignored annotation: /number=26 ignored annotation: intron 17291..17376 ignored annotation: /gene="PLCB3" ignored annotation: /number=26 ignored annotation: exon 17377..17453 ignored annotation: /gene="PLCB3" ignored annotation: /number=27 ignored annotation: intron 17454..17565 ignored annotation: /gene="PLCB3" ignored annotation: /number=27 ignored annotation: exon 17566..17655 ignored annotation: /gene="PLCB3" ignored annotation: /number=28 ignored annotation: intron 17656..17745 ignored annotation: /gene="PLCB3" ignored annotation: /number=28 ignored annotation: exon 17746..17803 ignored annotation: /gene="PLCB3" ignored annotation: /number=29 ignored annotation: intron 17804..18435 ignored annotation: /gene="PLCB3" ignored annotation: /number=29 ignored annotation: exon 18436..18522 ignored annotation: /gene="PLCB3" ignored annotation: /number=30 ignored annotation: intron 18523..18603 ignored annotation: /gene="PLCB3" ignored annotation: /number=30 ignored annotation: exon 18604..19192 ignored annotation: /number=31 ignored annotation: 3'UTR 18808..19192 ignored annotation: BASE COUNT 3737 a 5751 c 5870 g 3929 t 2 others 19201 gacagnactc tnggccctaa gtttcctcat ctataaaatg gactttgggc atttggtggg ** orig/raws/HSU26425:570: invalid base letter "n" === HSU27266 === locus = HSU27266 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="1q32.1" ignored annotation: /chromosome="1" ignored annotation: /cell_type="lymphocyte" ignored annotation: /dev_stage="adult" ignored annotation: TATA_signal 738..742 ignored annotation: 5'UTR 808..835 ignored annotation: /gene="MyBP-H" ignored annotation: exon 808..1040 ignored annotation: /gene="MyBP-H" ignored annotation: /number=1 ignored annotation: /evidence=experimental mRNA = 808..1040,1130..1264,1996..2163,4550..4638,5012..5207,5389..5528,6140..6299,7201..7337,7498..7684,7915..7965,8499..8779 ignored annotation: /gene="MyBP-H" ignored annotation: /note="corresponding cDNA sequence is reported in GenBank ignored annotation: Accession Number L05606" ignored annotation: /product="myosin binding protein H" ignored annotation: gene 808..8779 ignored annotation: /gene="MyBP-H" CDS = 836..1040,1130..1264,1996..2163,4550..4638,5012..5207,5389..5528,6140..6299,7201..7337,7498..7684,7915..7931 ignored annotation: /gene="MyBP-H" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="myosin binding protein H" ignored annotation: /db_xref="PID:g2636654" translation = MMEKNTSEGPACSPEETASESAKVPTAEPPGEVAVSESTREEQVPKPHGPAPQAPTASTATKPAPPSEDVPSAPLLLTLDDVSSSSVTVSWEPPERLGRLGLQGYVLELCREGGSEWVPVSARPMMVTQQTVRNLALGDKFLLRVSAVRPAGAGPPAMLDQPIHIRENIEAPKIRVPRHLRQTYIRQVGETVNLQIPFQGKPKPQATWTHNGHALDSQRVSMRTGDQDSILFIRSAQRSDSGRYELTVRVEDLEAKAVIDILVIEKPGPPCCIRLLDVWGCNAALQWTPPQDTGNTELLGYMVQKADKKTGQWFTVLERYHPTTCTISDLIIGNSYSFRVFSENLCGLSTSATVTKELAHIQKADIAAKPKGFIERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNKMEIQGNPKYRALSEQGVCTLEIRKPSPFDSGVYTCKAINVLGEASVDCRLEVKASAAH ignored annotation: exon 1130..1264 ignored annotation: /gene="MyBP-H" ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: repeat_unit 1397..1413 ignored annotation: /gene="MyBP-H" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 1453..1467 ignored annotation: /gene="MyBP-H" ignored annotation: /rpt_type=inverted ignored annotation: conflict 1996 ignored annotation: /gene="MyBP-H" ignored annotation: /citation=[1] ignored annotation: /replace="c" ignored annotation: exon 1996..2163 ignored annotation: /gene="MyBP-H" ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: repeat_unit 3216..3234 ignored annotation: /gene="MyBP-H" ignored annotation: /rpt_type=direct ignored annotation: exon 4550..4638 ignored annotation: /gene="MyBP-H" ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: exon 5012..5207 ignored annotation: /gene="MyBP-H" ignored annotation: /number=5 ignored annotation: /evidence=experimental ignored annotation: exon 5389..5528 ignored annotation: /gene="MyBP-H" ignored annotation: /number=6 ignored annotation: /evidence=experimental ignored annotation: exon 6140..6299 ignored annotation: /gene="MyBP-H" ignored annotation: /number=7 ignored annotation: /evidence=experimental ignored annotation: repeat_unit 6666..6684 ignored annotation: /gene="MyBP-H" ignored annotation: /rpt_type=direct ignored annotation: exon 7201..7337 ignored annotation: /gene="MyBP-H" ignored annotation: /number=8 ignored annotation: /evidence=experimental ignored annotation: conflict 7323 ignored annotation: /gene="MyBP-H" ignored annotation: /citation=[1] ignored annotation: /replace="" ignored annotation: conflict 7334 ignored annotation: /gene="MyBP-H" ignored annotation: /citation=[1] ignored annotation: /replace="" ignored annotation: exon 7498..7684 ignored annotation: /gene="MyBP-H" ignored annotation: /number=9 ignored annotation: /evidence=experimental ignored annotation: conflict 7500 ignored annotation: /gene="MyBP-H" ignored annotation: /citation=[1] ignored annotation: /replace="" ignored annotation: exon 7915..7965 ignored annotation: /gene="MyBP-H" ignored annotation: /number=10 ignored annotation: /evidence=experimental ignored annotation: 3'UTR join(7932..7965,8499..8779) ignored annotation: /gene="MyBP-H" ignored annotation: conflict 7959 ignored annotation: /gene="MyBP-H" ignored annotation: /citation=[1] ignored annotation: /replace="" ignored annotation: exon 8499..8758 ignored annotation: /gene="MyBP-H" ignored annotation: /number=11 ignored annotation: /evidence=experimental ignored annotation: BASE COUNT 2115 a 2895 c 2715 g 1920 t mRNA range 808..1040 mRNA range 1130..1264 mRNA range 1996..2163 mRNA range 4550..4638 mRNA range 5012..5207 mRNA range 5389..5528 mRNA range 6140..6299 mRNA range 7201..7337 mRNA range 7498..7684 mRNA range 7915..7965 mRNA range 8499..8779 CDS range 836..1040 CDS range 1130..1264 CDS range 1996..2163 CDS range 4550..4638 CDS range 5012..5207 CDS range 5389..5528 CDS range 6140..6299 CDS range 7201..7337 CDS range 7498..7684 CDS range 7915..7931 seq_ini = 1 seq_fin = 9645 i = 7931 last codon bas = ac[tga]aga last codon lab = EF[DEF]YYY === HSU29895 === locus = HSU29895 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leucocyte" ignored annotation: /chromosome="12" ignored annotation: /map="12q24-qter" ignored annotation: exon <1968..1995 ignored annotation: /number=1 CDS = 1993..1995,2103..2129,2997..3059,3384..3488,4191..4233,4410..4492,6028..6117,10680..10783,11393..11470,13255..13417,13536..13607,16637..16759,20412..20528,20622..20732 ignored annotation: /codon_start=1 ignored annotation: /product="4-hydroxyphenylpyruvate-dioxygenase" ignored annotation: /db_xref="PID:g1667330" translation = MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEPPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM ignored annotation: intron 1996..2102 ignored annotation: /number=1 ignored annotation: exon 2103..2129 ignored annotation: /number=2 ignored annotation: intron 2130..2996 ignored annotation: /number=2 ignored annotation: exon 2997..3059 ignored annotation: /number=3 ignored annotation: intron 3060..3383 ignored annotation: /number=3 ignored annotation: exon 3384..3488 ignored annotation: /number=4 ignored annotation: intron 3489..4190 ignored annotation: /number=4 ignored annotation: exon 4191..4233 ignored annotation: /number=5 ignored annotation: intron 4234..4409 ignored annotation: /number=5 ignored annotation: exon 4410..4492 ignored annotation: /number=6 ignored annotation: intron 4493..6027 ignored annotation: /number=6 ignored annotation: exon 6028..6117 ignored annotation: /number=7 ignored annotation: intron 6118..10679 ignored annotation: /number=7 ignored annotation: exon 10680..10783 ignored annotation: /number=8 ignored annotation: intron 10784..11392 ignored annotation: /number=8 ignored annotation: exon 11393..11470 ignored annotation: /number=9 ignored annotation: intron 11471..13254 ignored annotation: /number=9 ignored annotation: exon 13255..13417 ignored annotation: /number=10 ignored annotation: intron 13418..13535 ignored annotation: /number=10 ignored annotation: exon 13536..13607 ignored annotation: /number=11 ignored annotation: intron 13608..16636 ignored annotation: /number=11 ignored annotation: exon 16637..16759 ignored annotation: /number=12 ignored annotation: intron 16760..20411 ignored annotation: /number=12 ignored annotation: exon 20412..20528 ignored annotation: /number=13 ignored annotation: intron 20529..20621 ignored annotation: /number=13 ignored annotation: exon 20622..>20890 ignored annotation: /number=14 ignored annotation: BASE COUNT 5118 a 5298 c 5467 g 4921 t 86 others 361 gggacagagt tcctacctct agatgcctgc cagcctttgn aacccactgc tgttgacaca ** orig/raws/HSU29895:108: invalid base letter "n" === HSU29953 === locus = HSU29953 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="17p13.1" ignored annotation: /chromosome="17" mRNA = 6652..6779,11573..11664,14528..14726,15707..15862,16551..16754,19737..19879,21219..21429,21874..22251 ignored annotation: /product="pigment epithelium-derived factor" ignored annotation: 5'UTR join(6652..6779,11573..11580) ignored annotation: exon 6652..6779 ignored annotation: /number=1 ignored annotation: exon 11573..11664 ignored annotation: /number=2 CDS = 11581..11664,14528..14726,15707..15862,16551..16754,19737..19879,21219..21429,21874..21965 ignored annotation: /note="PEDF" ignored annotation: /codon_start=1 ignored annotation: /product="pigment epithelium-derived factor" ignored annotation: /db_xref="PID:g1144299" translation = MQALVLLLCIGALLGHSSCQNPASPPEEGSPDPDSTGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGAEQRTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQGGTPGWL ignored annotation: exon 14528..14726 ignored annotation: /number=3 ignored annotation: exon 15707..15862 ignored annotation: /number=4 ignored annotation: exon 16551..16754 ignored annotation: /number=5 ignored annotation: exon 19737..19879 ignored annotation: /number=6 ignored annotation: exon 21219..21429 ignored annotation: /number=7 ignored annotation: exon 21874..22251 ignored annotation: /number=8 ignored annotation: 3'UTR 21966..22251 ignored annotation: BASE COUNT 5280 a 5709 c 6138 g 5347 t 10 others 15121 gaatagtctt ttttttttnt ttttttnnnc tttctgagac ggagtctcgc tttgtcncca ** orig/raws/HSU29953:316: invalid base letter "n" === HSU30787 === locus = HSU30787 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: protein_bind 1028..1037 ignored annotation: /bound_moiety="Sp1" ignored annotation: TATA_signal 1066..1073 mRNA = 1089..1126,1748..1860,1976..2055,2132..2194,2434..2631,2749..2910,3279..3416,3576..3676,3780..3846,4179..4514 ignored annotation: /gene="URO-D" ignored annotation: /product="uroporphyrinogen decarboxylase" ignored annotation: gene 1089..4514 ignored annotation: /gene="URO-D" CDS = 1107..1126,1748..1860,1976..2055,2132..2194,2434..2631,2749..2910,3279..3416,3576..3676,3780..3846,4179..4340 ignored annotation: /gene="URO-D" ignored annotation: /codon_start=1 ignored annotation: /product="uroporphyrinogen decarboxylase" ignored annotation: /db_xref="PID:g1322019" translation = MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFLLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQN ignored annotation: BASE COUNT 984 a 1159 c 1197 g 1174 t mRNA range 1089..1126 mRNA range 1748..1860 mRNA range 1976..2055 mRNA range 2132..2194 mRNA range 2434..2631 mRNA range 2749..2910 mRNA range 3279..3416 mRNA range 3576..3676 mRNA range 3780..3846 mRNA range 4179..4514 CDS range 1107..1126 CDS range 1748..1860 CDS range 1976..2055 CDS range 2132..2194 CDS range 2434..2631 CDS range 2749..2910 CDS range 3279..3416 CDS range 3576..3676 CDS range 3780..3846 CDS range 4179..4340 seq_ini = 1 seq_fin = 4514 i = 4340 last codon bas = ac[tga]ccg last codon lab = EF[DEF]YYY === HSU31929 === locus = HSU31929 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Xp21" ignored annotation: /chromosome="X" ignored annotation: misc_feature 1..6 ignored annotation: /note="EcoRI restriction site" ignored annotation: repeat_region 63..86 ignored annotation: /rpt_type=direct ignored annotation: /rpt_unit=agg ignored annotation: repeat_region 88..185 ignored annotation: /rpt_type=direct ignored annotation: /rpt_unit=ggaa ignored annotation: misc_feature 1408..1416 ignored annotation: /note="putative steroidogenic factor 1 (SF-1) response ignored annotation: element" ignored annotation: TATA_signal 1521..1525 ignored annotation: gene 1580..6377 ignored annotation: /gene="DAX1" CDS = 1580..2747,6133..6377 ignored annotation: /gene="DAX1" ignored annotation: /note="responsible for X-linked adrenal hypoplasia ignored annotation: congenita and hypogonadotropic hypogonadism; allele: AHC" ignored annotation: /codon_start=1 ignored annotation: /product="orphan nuclear receptor" ignored annotation: /db_xref="PID:g1163077" translation = MAGQNHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNVALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGLPGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI ignored annotation: misc_feature 3423..3428 ignored annotation: /gene="DAX1" ignored annotation: /note="EcoRI restriction site" ignored annotation: repeat_region 4334..4371 ignored annotation: /rpt_type=direct ignored annotation: /rpt_unit=ca ignored annotation: misc_feature 4824..4829 ignored annotation: /gene="DAX1" ignored annotation: /note="EcoRI restriction site" ignored annotation: polyA_signal one-of(6427..6432,6466..6471) ignored annotation: misc_feature 8846..8851 ignored annotation: /note="EcoRI restriction site" ignored annotation: BASE COUNT 2452 a 1942 c 2094 g 2363 t // ** orig/raws/HSU31929:221: missing "mRNA" entry === HSU32323 === locus = HSU32323 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="9p13" ignored annotation: /chromosome="9" ignored annotation: GC_signal 303..315 ignored annotation: exon 802..862 ignored annotation: /number=1 ignored annotation: exon 2073..2172 ignored annotation: /number=2 CDS = 2073..2172,2463..2523,3597..3766,3893..4007,4161..4193,4279..4445,5376..5539,6595..6736,7110..7229,7340..7436,7690..7772,8319..8335 ignored annotation: /codon_start=1 ignored annotation: /product="interleukin-11 receptor alpha chain" ignored annotation: /db_xref="PID:g975335" translation = MSSSCSGLSRVLVAVATALVSASSPCPQAWGPPGVQYGQPGRSVKLCCPGVTAGDPVSWFRDGEPKLLQGPDSGLGHELVLAQADSTDEGTYICQTLDGALGGTVTLQLGYPPARPVVSCQAADYENFSCTWSPSQISGLPTRYLTSYRKKTVLGADSQRRSPSTGPWPCPQDPLGAARCVVHGAEFWSQYRINVTEVNPLGASTRLLDVSLQSILRPDPPQGLRVESVPGYPRRLRASWTYPASWPCQPHFLLKFRLQYRPAQHPAWSTVEPAGLEEVITDAVAGLPHAVRVSARDFLDAGTWSTWSPEAWGTPSTGTIPKEIPAWGQLHTQPEVEPQVDSPAPPRPSLQPHPRLLDHRDSVEQVAVLASLGILSFLGLVAGALALGLWLRLRRGGKDGSPKPGFLASVIPVDRRPGAPNL ignored annotation: exon 2463..2523 ignored annotation: /number=3 ignored annotation: exon 3597..3766 ignored annotation: /number=4 ignored annotation: exon 3893..4007 ignored annotation: /number=5 ignored annotation: exon 4161..4193 ignored annotation: /number=6 ignored annotation: exon 4279..4445 ignored annotation: /number=7 ignored annotation: exon 5376..5539 ignored annotation: /number=8 ignored annotation: exon 6595..6736 ignored annotation: /number=9 ignored annotation: exon 7110..7229 ignored annotation: /number=10 ignored annotation: exon 7340..7436 ignored annotation: /number=11 ignored annotation: exon 7690..7772 ignored annotation: /number=12 ignored annotation: exon 8319..8701 ignored annotation: /number=13 ignored annotation: polyA_signal 8696..8701 ignored annotation: BASE COUNT 1948 a 2470 c 2536 g 2299 t 33 others 1501 agccaggttc aggcnagaag cctggcannn ngggcagggg tgggcctcag ggtgggagtg ** orig/raws/HSU32323:97: invalid base letter "n" === HSU32576 === locus = HSU32576 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="19" ignored annotation: /map="19q" ignored annotation: /clone_lib="P1 plasmid human genomic library from Genome ignored annotation: Systems, Inc., St. Louis, MO" mRNA = 2340..2455,4851..4992,5242..5596 ignored annotation: /gene="APOC4" ignored annotation: exon 2340..2455 ignored annotation: /gene="APOC4" ignored annotation: gene 2340..5596 ignored annotation: /gene="APOC4" CDS = 2380..2455,4851..4992,5242..5407 ignored annotation: /gene="APOC4" ignored annotation: /note="apolipoprotein" ignored annotation: /codon_start=1 ignored annotation: /product="apoC-IV" ignored annotation: /db_xref="PID:g975893" translation = MSLLRNRLQALPALCLCVLVLACIGACQPEAQEGTLSPPPKLKMSRWSLVRGRMKELLETVVNRTRDGWQWFWSPSTFRGFMQTYYDDHLRDLGPLTKAWFLESKDSLLKKTHSLCPRLVCGDKDQG ignored annotation: intron 2456..4850 ignored annotation: /gene="APOC4" ignored annotation: exon 4851..4992 ignored annotation: /gene="APOC4" ignored annotation: intron 4993..5241 ignored annotation: /gene="APOC4" ignored annotation: exon 5242..5596 ignored annotation: /gene="APOC4" ignored annotation: BASE COUNT 1394 a 1451 c 1749 g 1356 t mRNA range 2340..2455 mRNA range 4851..4992 mRNA range 5242..5596 CDS range 2380..2455 CDS range 4851..4992 CDS range 5242..5407 seq_ini = 1 seq_fin = 5950 i = 5407 last codon bas = gt[taa]aat last codon lab = EF[DEF]YYY === HSU37022 === locus = HSU37022 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="24C7" ignored annotation: /map="12q13" ignored annotation: /chromosome="12" mRNA = 85..291,729..965,1123..1258,1376..1543,1701..1810,2949..2999,3135..3270,3836..4233 ignored annotation: /gene="CDK4" ignored annotation: /product="cyclin-dependent kinase 4" ignored annotation: exon 85..291 ignored annotation: /gene="CDK4" ignored annotation: gene 85..4233 ignored annotation: /gene="CDK4" ignored annotation: exon 729..965 ignored annotation: /gene="CDK4" CDS = 748..965,1123..1258,1376..1543,1701..1810,2949..2999,3135..3270,3836..3928 ignored annotation: /gene="CDK4" ignored annotation: /codon_start=1 ignored annotation: /product="cyclin-dependent kinase 4" ignored annotation: /db_xref="PID:g1353416" translation = MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNPE ignored annotation: exon 1123..1258 ignored annotation: /gene="CDK4" ignored annotation: exon 1376..1543 ignored annotation: /gene="CDK4" ignored annotation: exon 1701..1810 ignored annotation: /gene="CDK4" ignored annotation: exon 2949..2999 ignored annotation: /gene="CDK4" ignored annotation: exon 3135..3270 ignored annotation: /gene="CDK4" ignored annotation: exon 3836..4233 ignored annotation: /gene="CDK4" ignored annotation: BASE COUNT 945 a 1050 c 1101 g 1124 t 13 others 2281 tatttattta tttatttatt gagataaggt ttcactctgn nacccaggct ggagtncagt ** orig/raws/HSU37022:103: invalid base letter "n" === HSU37106 === locus = HSU37106 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 757..906,1819..2644,2900..3075 ignored annotation: /note="erythroid cell-specific transcription factor with ignored annotation: three Cys-His zinc fingers of the Kruppel family; zinc ignored annotation: finger transcription factor" ignored annotation: /product="erythroid Kruppel-like factor EKLF" CDS = 820..906,1819..2644,2900..3075 ignored annotation: /note="erythroid cell-specific transcription factor with ignored annotation: three Cys-His zinc fingers of the Kruppel family; zinc ignored annotation: finger transcription factor" ignored annotation: /codon_start=1 ignored annotation: /product="erythroid Kruppel-like factor EKLF" ignored annotation: /db_xref="PID:g1389692" translation = MATAETALPSISTLTALGPFPDTQDDFLKWWRSEEAQDMGPGPPDPTEPPLHVKSEDQPGEEEDDERGADATWDLDLLLTNFSGPEPGGAPQTCALAPSEASGAQYPPPPETLGAYAGGPGLVAGLLGSEDHSGWVRPALRARAPDAFVGPALAPAPAPEPKALALQPVYPGPGAGSSGGYFPRTGLSVPAASGAPYGLLSGYPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLGPGTVGTGLGGTAEDPGVIAETAPSKRGRRSWARKRQAAHTCAHPGCGKSYTKSSHLKAHLRTHTGEKPYACTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKRHL ignored annotation: BASE COUNT 634 a 977 c 986 g 586 t 3 others 121 aagggtcccc agtagacaat ggtgggccag ttgtcagggg nttcctcctc ctgcagggct ** orig/raws/HSU37106:49: invalid base letter "n" === HSU40391 === locus = HSU40391 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="17q25" ignored annotation: promoter <1..696 ignored annotation: exon 697..855 ignored annotation: /number=1 mRNA = 697..855,1801..2038,2302..2456,2794..3246 ignored annotation: /product="serotonin N-acetyltransferase" ignored annotation: intron 856..1800 ignored annotation: /number=1 ignored annotation: exon 1801..2038 ignored annotation: /number=2 CDS = 1876..2038,2302..2456,2794..3099 ignored annotation: /codon_start=1 ignored annotation: /product="serotonin N-acetyltransferase" ignored annotation: /db_xref="PID:g1389594" translation = MSTQSTHPLKPEAPRLPPGIPESPSCQRRHTLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCLVAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQPAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC ignored annotation: intron 2039..2301 ignored annotation: /number=2 ignored annotation: exon 2302..2456 ignored annotation: /number=3 ignored annotation: intron 2457..2793 ignored annotation: /number=3 ignored annotation: exon 2794..3246 ignored annotation: /number=4 ignored annotation: misc_feature 3247..3453 ignored annotation: /note="3'flanking region" ignored annotation: BASE COUNT 686 a 1012 c 1082 g 673 t mRNA range 697..855 mRNA range 1801..2038 mRNA range 2302..2456 mRNA range 2794..3246 CDS range 1876..2038 CDS range 2302..2456 CDS range 2794..3099 seq_ini = 1 seq_fin = 3453 i = 3099 last codon bas = gc[tga]act last codon lab = EF[DEF]YYY === HSU43415 === locus = HSU43415 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="7" ignored annotation: /map="'7q31-32" ignored annotation: gene 1..2747 ignored annotation: /gene="ob" CDS = 1..144,2391..2747 ignored annotation: /gene="ob" ignored annotation: /codon_start=1 ignored annotation: /product="obese" ignored annotation: /db_xref="PID:g1163106" translation = MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHTSVSSKQKVTGLDFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLPWASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC ignored annotation: BASE COUNT 689 a 673 c 724 g 661 t // ** orig/raws/HSU43415:80: missing "mRNA" entry === HSU43572 === locus = HSU43572 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="17q21" ignored annotation: /cell_type="fibroblast cell" mRNA = <1085..1799,2542..2689,3482..3628,3813..3898,6091..6347,8167..9588 ignored annotation: /gene="NAGLU" ignored annotation: /note="5' end of mRNA is uncertain" ignored annotation: gene 1085..9588 ignored annotation: /gene="NAGLU" CDS = 1417..1799,2542..2689,3482..3628,3813..3898,6091..6347,8167..9377 ignored annotation: /gene="NAGLU" ignored annotation: /EC_number="3.2.1.50" ignored annotation: /note="lysosomal enzyme; deficient in Sanfilippo B ignored annotation: syndrome" ignored annotation: /codon_start=1 ignored annotation: /function="one of four enzymes involved in the degradation ignored annotation: of heparan sulfate; specifically removes the ignored annotation: alpha-N-acetylglucosamine residues" ignored annotation: /product="alpha-N-acetylglucosaminidase" ignored annotation: /db_xref="PID:g1171229" translation = MEAVAVAAAVGVLLLAGAGGAAGDEAREAAAVRALVARLLGPGPAADFSVSVERALAAKPGLDTYSLGGGGAARVRVRGSTGVAAAAGLHRYLRDFCGCHVAWSGSQLRLPRPLPAVPGELTEATPNRYRYYQNVCTQSYSFVWWDWARWEREIDWMALNGINLALAWSGQEAIWQRVYLALGLTQAEINEFFTGPAFLAWGRMGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEAVTRVFPQVNVTKMGSWGHFNCSYSCSFLLAPEDPIFPIIGSLFLRELIKEFGTDHIYGADTFNEMQPPSSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLVLDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHNRSPLVRRPSLQMNTSIWYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELASLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLWGPEGNILDYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQLEQAFVLSKQRYPSQPRGDTVDLAKKIFLKYYPGWVAGSW ignored annotation: intron 1800..2541 ignored annotation: /gene="NAGLU" ignored annotation: /number=1 ignored annotation: intron 2690..3481 ignored annotation: /gene="NAGLU" ignored annotation: /note="the sequence for this intron was partly determined ignored annotation: by the submitters and partly derived from GenBank ignored annotation: Accession Number M84472" ignored annotation: /number=2 ignored annotation: intron 3629..3812 ignored annotation: /gene="NAGLU" ignored annotation: /number=3 ignored annotation: intron 3899..6090 ignored annotation: /gene="NAGLU" ignored annotation: /note="the sequence for this intron was partly determined ignored annotation: by the submitters and partly derived from GenBank ignored annotation: Accession Number M84472" ignored annotation: /number=4 ignored annotation: intron 6348..8166 ignored annotation: /gene="NAGLU" ignored annotation: /note="the sequence for this intron was partly determined ignored annotation: by the submitters and partly derived from GenBank ignored annotation: Accession Number M84472" ignored annotation: /number=5 ignored annotation: BASE COUNT 2139 a 2846 c 2824 g 2318 t mRNA range 1085..1799 mRNA range 2542..2689 mRNA range 3482..3628 mRNA range 3813..3898 mRNA range 6091..6347 mRNA range 8167..9588 CDS range 1417..1799 CDS range 2542..2689 CDS range 3482..3628 CDS range 3813..3898 CDS range 6091..6347 CDS range 8167..9377 seq_ini = 1 seq_fin = 10127 i = 9377 last codon bas = gg[tga]tag last codon lab = EF[DEF]YYY === HSU43901 === locus = HSU43901 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 525..578,1430..1595,2410..2528,4591..4836,5486..5614,5733..5898,6112..6272 ignored annotation: /product="37 kD laminin receptor precursor/p40 ribosome ignored annotation: associated protein" ignored annotation: prim_transcript 525..6272 ignored annotation: /note="37 kD laminin receptor precursor/p40 ribosome ignored annotation: associated protein" ignored annotation: prim_transcript 527..6272 ignored annotation: /note="37 kD laminin receptor precursor/p40 ribosome ignored annotation: associated protein" mRNA join(527..578,1430..1595,2410..2528,4591..4836,5486..5614, ** orig/raws/HSU43901:47: more than one "mRNA" entry === HSU45984 === locus = HSU45984 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="6" ignored annotation: /map="6q27" ignored annotation: /clone="GPR-CY4" mRNA = 35..140,237..3136 ignored annotation: gene 132..1352 ignored annotation: /gene="CMKBR6" CDS = 132..140,237..1352 ignored annotation: /gene="CMKBR6" ignored annotation: /note="G protein-coupled receptor" ignored annotation: /codon_start=1 ignored annotation: /product="CCR6 chemokine receptor" ignored annotation: /db_xref="PID:g2251211" translation = MSGESMNFSDVFDSSEDYFVSVNTSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVFGLLGNILVVITFAFYKKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCKLLKGIYAINFNCGMLLLTCISMDRYIAIVQATKSFRLRSRTLPRSKIICLVVWGLSVIISSSTFVFNQKYNTQGSDVCEPKYQTVSEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFIVKTLVQAQNSKRHKAIRVIIAVVLVFLACQIPHNMVLLVTAANLGKMNRSCQSEKLIGYTKTVTEVLAFLHCCLNPVLYAFIGQKFRNYFLKILKDLWCVRRKYKSSGFSCAGRYSENISRQTSETADNDNASSFTM ignored annotation: polyA_signal 3113..3118 ignored annotation: polyA_site 3137 ignored annotation: BASE COUNT 1015 a 726 c 828 g 1124 t mRNA range 35..140 mRNA range 237..3136 CDS range 132..140 CDS range 237..1352 seq_ini = 1 seq_fin = 3693 i = 1352 last codon bas = tg[tga]tag last codon lab = EF[DEF]YYY === HSU46165 === locus = HSU46165 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 1720..1827,2037..2421,3320..3393,3519..3723,4842..5510 ignored annotation: /product="Rad GTPase" CDS = 2052..2421,3320..3393,3519..3723,4842..5119 ignored annotation: /codon_start=1 ignored annotation: /product="Rad GTPase" ignored annotation: /db_xref="PID:g1620563" translation = MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAAAGTGTQGPRLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSLEKASELRVQLRRHVQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL ignored annotation: BASE COUNT 1134 a 1535 c 1704 g 1116 t 21 others 61 nacagctacc cgccaccttc gccctctgca agacacccag aggaggctct ttccagtggc ** orig/raws/HSU46165:48: invalid base letter "n" === HSU46692 === locus = HSU46692 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="21" ignored annotation: /map="21q22.3" ignored annotation: 5'UTR 321..416 mRNA = 321..482,1926..2027,2355..2733 ignored annotation: gene 417..2483 ignored annotation: /gene="cystatin B" CDS = 417..482,1926..2027,2355..2483 ignored annotation: /gene="cystatin B" ignored annotation: /note="EPM1 disease gene; cysteine protease inhibitor" ignored annotation: /codon_start=1 ignored annotation: /product="cystatin B" ignored annotation: /db_xref="PID:g1235678" translation = MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF ignored annotation: repeat_region 1479..1741 ignored annotation: /rpt_family="Alu" ignored annotation: 3'UTR 2484..2733 ignored annotation: polyA_signal 2709..2715 ignored annotation: polyA_site 2733 ignored annotation: BASE COUNT 573 a 830 c 800 g 619 t mRNA range 321..482 mRNA range 1926..2027 mRNA range 2355..2733 CDS range 417..482 CDS range 1926..2027 CDS range 2355..2483 seq_ini = 1 seq_fin = 2822 i = 2483 last codon bas = tc[tga]tcc last codon lab = EF[DEF]YYY === HSU46920 === locus = HSU46920 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" ignored annotation: /map="1q21, between psGBA and THBS3" mRNA = <1379..1459,2473..2542,2675..2754,4254..4346,4512..4694,4821..4897,5363..5517,5610..5935 ignored annotation: /gene="MTX" ignored annotation: /product="metaxin" ignored annotation: gene 1379..5935 ignored annotation: /gene="MTX" ignored annotation: exon <1379..1459 ignored annotation: /gene="MTX" ignored annotation: /number=1 CDS = 1379..1459,2473..2542,2675..2754,4254..4346,4512..4694,4821..4897,5363..5517,5610..5824 ignored annotation: /gene="MTX" ignored annotation: /codon_start=1 ignored annotation: /product="metaxin" ignored annotation: /db_xref="PID:g1326108" translation = MAAPMELFCWSGGWGLPSVDLDSLAVLTYARFTGAPLKVHKISNPWQSPSGTLPALRTSHGEVISVPHKIITHLRKEKYNADYDLSARQGADTLAFMSLLEEKLLPVLVHTFWIDTKNYVEVTRKWYAEAMPFPLNFFLPGRMQRQYMERLQLLTGEHRPEDEEELEKELYREARECLTLLSQRLGSQKFFFGDAPASLDAFVFSYLALLLQAKLPSGKLQVHLRGLHNLCAYCTHILSLYFPWDGAEVPPQRQTPAGPETEEEPYRRRNQILSVLAGLAAMVGYALLSGIVSIQRATPARAPGTRTLGMAEEDEEE ignored annotation: exon 2473..2542 ignored annotation: /gene="MTX" ignored annotation: /number=2 ignored annotation: exon 2675..2754 ignored annotation: /gene="MTX" ignored annotation: /number=3 ignored annotation: exon 4254..4346 ignored annotation: /gene="MTX" ignored annotation: /number=4 ignored annotation: exon 4512..4694 ignored annotation: /gene="MTX" ignored annotation: /number=5 ignored annotation: exon 4821..4897 ignored annotation: /gene="MTX" ignored annotation: /number=6 ignored annotation: exon 5363..5517 ignored annotation: /gene="MTX" ignored annotation: /number=7 ignored annotation: exon 5610..5935 ignored annotation: /gene="MTX" ignored annotation: /number=8 ignored annotation: BASE COUNT 1324 a 1553 c 1791 g 1267 t mRNA range 1379..1459 mRNA range 2473..2542 mRNA range 2675..2754 mRNA range 4254..4346 mRNA range 4512..4694 mRNA range 4821..4897 mRNA range 5363..5517 mRNA range 5610..5935 CDS range 1379..1459 CDS range 2473..2542 CDS range 2675..2754 CDS range 4254..4346 CDS range 4512..4694 CDS range 4821..4897 CDS range 5363..5517 CDS range 5610..5824 seq_ini = 1 seq_fin = 5935 i = 5824 last codon bas = aa[tga]ttt last codon lab = EF[DEF]YYY === HSU48795 === locus = HSU48795 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="3" ignored annotation: /map="3p21.3" ignored annotation: exon 699..915 ignored annotation: /number=1 mRNA = 699..915,1554..1661,1803..1874,2492..2684 ignored annotation: /product="antimicrobial protein CAP18 precursor" CDS = 715..915,1554..1661,1803..1874,2492..2623 ignored annotation: /codon_start=1 ignored annotation: /product="antimicrobial protein CAP18 precursor" ignored annotation: /db_xref="PID:g1322244" translation = MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES ignored annotation: sig_peptide 715..804 ignored annotation: /product="antimicrobial protein CAP18" ignored annotation: mat_peptide join(805..915,1554..1661,1803..1874,2492..2620) ignored annotation: /product="antimicrobial protein CAP18" ignored annotation: intron 916..1553 ignored annotation: /number=1 ignored annotation: exon 1554..1661 ignored annotation: /number=2 ignored annotation: intron 1662..1802 ignored annotation: /number=2 ignored annotation: exon 1803..1874 ignored annotation: /number=3 ignored annotation: intron 1875..2491 ignored annotation: /number=3 ignored annotation: exon 2492..2684 ignored annotation: /number=4 ignored annotation: misc_feature 2510..2620 ignored annotation: /note="encodes antimicrobial domain" ignored annotation: BASE COUNT 609 a 775 c 796 g 699 t mRNA range 699..915 mRNA range 1554..1661 mRNA range 1803..1874 mRNA range 2492..2684 CDS range 715..915 CDS range 1554..1661 CDS range 1803..1874 CDS range 2492..2623 seq_ini = 1 seq_fin = 2879 i = 2623 last codon bas = cc[tag]tgt last codon lab = EF[DEF]YYY === HSU48865 === locus = HSU48865 ignored annotation: /organism="Homo sapiens" ignored annotation: /note="GDB DSEG number: D14S990" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="14" ignored annotation: /map="14q11.2" ignored annotation: gene 1815..3668 ignored annotation: /gene="CEBPE" ignored annotation: exon <1815..2324 ignored annotation: /gene="CEBPE" ignored annotation: /number=1 CDS = 1815..2324,3083..3418 ignored annotation: /gene="CEBPE" ignored annotation: /note="bZIP transcription factor; CCAAT/enhancer binding ignored annotation: protein epsilon" ignored annotation: /codon_start=1 ignored annotation: /product="C/EBP epsilon" ignored annotation: /db_xref="PID:g1399175" translation = MSHGTYYECEPRGGQQPLEFSGGRAGPGELGDMCEHEASIDLSAYIESGEEQLLSDLFAVKPAPEARRLKGPGTPAFPHYLPPDPRPFAYPPHTFGPDRKALGPGIYSSPGSYDPRAVAVKEEPRGPEGSRAASRGSYNPLQYQVAHCGQTAMHLPPTLAAPGQPLRVLKAPLATAAPPCSPLLKAPSPAGPLHKGKKAVNKDSLEYRLRRERNNIAVRKSRDKAKRRILETQQKVLEYMAENERLRSRVEQLTQELDTLRNLFRQIPEAANLIKGVGGCS ignored annotation: intron 2325..3082 ignored annotation: /gene="CEBPE" ignored annotation: repeat_region 2712..2844 ignored annotation: /rpt_family="Alu" ignored annotation: exon 3083..3582 ignored annotation: /gene="CEBPE" ignored annotation: /number=2 ignored annotation: polyA_signal 3577..3582 ignored annotation: /gene="CEBPE" ignored annotation: repeat_region 3616..3668 ignored annotation: /note="dinucleotide repeat" ignored annotation: BASE COUNT 868 a 1027 c 1113 g 698 t // ** orig/raws/HSU48865:123: missing "mRNA" entry === HSU48869 === locus = HSU48869 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="11p15.5" mRNA = 170..1230,1766..1901,1985..2211 ignored annotation: /gene="CDKN1C" ignored annotation: gene 170..2211 ignored annotation: /gene="CDKN1C" CDS = 411..1230,1766..1896 ignored annotation: /gene="CDKN1C" ignored annotation: /codon_start=1 ignored annotation: /product="cdk-inhibitor p57/KIP2" ignored annotation: /db_xref="PID:g1213448" translation = MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNRWDYDFQQDMPLRGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSAAPGVGSVEQTPRKRLR ignored annotation: BASE COUNT 279 a 858 c 761 g 313 t mRNA range 170..1230 mRNA range 1766..1901 mRNA range 1985..2211 CDS range 411..1230 CDS range 1766..1896 seq_ini = 1 seq_fin = 2211 i = 1896 last codon bas = gg[tga]gcc last codon lab = EF[DEF]YYY === HSU49742 === locus = HSU49742 ignored annotation: /organism="Homo sapiens" ignored annotation: /isolate="individual J.N." ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="roJHN" ignored annotation: /map="1 bp upstream of BamHI site" ignored annotation: CAAT_signal 122..127 ignored annotation: /note="putative CAAT box" ignored annotation: TATA_signal 171..177 ignored annotation: /note="putative TATA box" ignored annotation: prim_transcript 200..>5278 ignored annotation: /note="rhodopsin mRNA (alt); the 5' untranslated region is ignored annotation: similar to the bovine sequence" ignored annotation: prim_transcript 202..>5278 ignored annotation: /note="rhodopsin mRNA (alt); the 5' untranslated region is ignored annotation: similar to the bovine sequence" ignored annotation: exon <295..655 ignored annotation: /number=1 CDS = 295..655,2439..2607,3813..3978,4095..4334,5168..5278 ignored annotation: /note="the 5 exons of the human rhodopsin gene are similar ignored annotation: to the 5 exons of the Bos taurus opsin gene" ignored annotation: /codon_start=1 ignored annotation: /product="rhodopsin" ignored annotation: /db_xref="PID:g1236137" translation = MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA ignored annotation: intron 656..2438 ignored annotation: /note="intron A; the four introns present in both the ignored annotation: human and the bovine genes occur at precisely analogous ignored annotation: positions and are of comparable lengths" ignored annotation: exon 2439..2607 ignored annotation: /number=2 ignored annotation: intron 2608..3812 ignored annotation: /note="intron B; the four introns present in both the ignored annotation: human and the bovine genes occur at precisely analogous ignored annotation: positions and are of comparable lengths" ignored annotation: exon 3813..3978 ignored annotation: /number=3 ignored annotation: intron 3979..4094 ignored annotation: /note="intron C; the four introns present in both the ignored annotation: human and the bovine genes occur at precisely analogous ignored annotation: positions and are of comparable lengths" ignored annotation: exon 4095..4334 ignored annotation: /number=4 ignored annotation: intron 4335..5167 ignored annotation: /note="intron D; the four introns present in both the ignored annotation: human and the bovine genes occur at precisely analogous ignored annotation: positions and are of comparable lengths" ignored annotation: exon 5168..>5278 ignored annotation: /number=5 ignored annotation: polyA_signal 5642..5647 ignored annotation: /note="potential polyA signal" ignored annotation: polyA_signal 6698..6903 ignored annotation: /note="potential polyA signal" ignored annotation: BASE COUNT 1524 a 2022 c 1796 g 1611 t // ** orig/raws/HSU49742:200: missing "mRNA" entry === HSU50136 === locus = HSU50136 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="5" ignored annotation: /map="5q35" mRNA = 1351..1504,2950..3049,3152..3222,3307..3388,3619..3876 ignored annotation: /gene="LTC4S" ignored annotation: /product="leukotriene C4 synthase" ignored annotation: gene 1351..3876 ignored annotation: /gene="LTC4S" CDS = 1447..1504,2950..3049,3152..3222,3307..3388,3619..3760 ignored annotation: /gene="LTC4S" ignored annotation: /EC_number="2.5.1.37" ignored annotation: /codon_start=1 ignored annotation: /product="leukotriene C4 synthase" ignored annotation: /db_xref="PID:g1314483" translation = MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVALAALGLLAHFLPAALRAALLGRLRTLLPWA ignored annotation: BASE COUNT 784 a 1385 c 1545 g 751 t mRNA range 1351..1504 mRNA range 2950..3049 mRNA range 3152..3222 mRNA range 3307..3388 mRNA range 3619..3876 CDS range 1447..1504 CDS range 2950..3049 CDS range 3152..3222 CDS range 3307..3388 CDS range 3619..3760 seq_ini = 1 seq_fin = 4465 i = 3760 last codon bas = cc[tga]gac last codon lab = EF[DEF]YYY === HSU50871 === locus = HSU50871 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="1" mRNA = 26409..26551,30511..30696,37057..37217,38872..39086,40705..40846,43261..43328,43999..44219,45205..45303,46448..46531,46913..47014,49177..49295,50594..51197 ignored annotation: /gene="STM2" ignored annotation: /product="familial Alzheimer's disease" ignored annotation: gene 26409..51197 ignored annotation: /gene="STM2" CDS = 37077..37217,38872..39086,40705..40846,43261..43328,43999..44219,45205..45303,46448..46531,46913..47014,49177..49295,50594..50749 ignored annotation: /gene="STM2" ignored annotation: /codon_start=1 ignored annotation: /product="familial Alzheimer's disease" ignored annotation: /db_xref="PID:g1354265" translation = MLTFMASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI ignored annotation: BASE COUNT 22964 a 19374 c 20239 g 24019 t 44 others 13681 tancctcctg aatagctggg attactggca tgcaccaccn tgcccagcta atttttgtat ** orig/raws/HSU50871:279: invalid base letter "n" === HSU51243 === locus = HSU51243 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="half lamda2; half lamda9; half lamda15" ignored annotation: /chromosome="4" ignored annotation: /map="4q" ignored annotation: TATA_signal 858..864 mRNA = 888..1006,3084..3132,3401..3533,5003..5214,6108..6240,6865..6962,7771..7900,11012..11226,14442..14574,16794..16891,18256..18388,19146..19369,20929..21061,22192..22252,23018..23143 ignored annotation: prim_transcript 888..23143 ignored annotation: exon 888..1006 ignored annotation: 5'UTR 888..918 CDS = 919..1006,3084..3132,3401..3533,5003..5214,6108..6240,6865..6962,7771..7900,11012..11226,14442..14574,16794..16891,18256..18388,19146..19369,20929..21061,22192..22212 ignored annotation: /codon_start=1 ignored annotation: /product="alpha-albumin" ignored annotation: /db_xref="PID:g1418262" translation = MKLLKLTGFIFFLFFLTESLTLPTQPRDIENFNSTQKFIEDNIEYITIIAFAQYVQEATFEEMEKLVKDMVEYKDRCMADKTLPECSKLPNNVLQEKICAMEGLPQKHNFSHCCSKVDAQRRLCFFYNKKSDVGFLPPFPTLDPEEKCQAYESNRESLLNHFLYEVARRNPFVFAPTLLTVAVHFEEVAKSCCEEQNKVNCLQTRAIPVTQYLKAFSSYQKHVCGALLKFGTKVVHFIYIAILSQKFPKIEFKELISLVEDVSSNYDGCCEGDVVQCIRDTSKVMNHICSKQDSISSKIKECCEKKIPERGQCIINSNKDDRPKDLSLREGKFTDSENVCQERDADPDTFFAKFTFEYSRRHPDLSIPELLRIVQIYKDLLRNCCNTENPPGCYRYAEDKFNETTEKSLKMVQQECKHFQNLGKDGLKYHYLIRLTKIAPQLSTEELVSLGEKMVTAFTTCCTLSEEFACVDNLADLVFGELCGVNENRTINPAVDHCCKTNFAFRRPCFESLKADKTYVPPPFSQDLFTFHADMCQSQNEELQRKTDRFLVNLVKLKHELTDEELQSLFTNFANVVDKCCKAESPEVCFNEESPKIGN ignored annotation: mat_peptide join(982..1006,3084..3085,1006,3084..3132,3401,3131..3132, ignored annotation: 3401..3533,5003..5214,6108,5213..5214,6108..6240, ignored annotation: 6865..6962,7771,6961..6962,7771..7900,11012..11226,14442, ignored annotation: 11225..11226,14442..14574,16794..16891,18256,16890..16891, ignored annotation: 18256..18388,19146..19369,20929,19368..19369,20929..21061, ignored annotation: 22192..22209) ignored annotation: /product="alpha-albumin" ignored annotation: intron 1007..3083 ignored annotation: exon 3084..3132 ignored annotation: intron 3133..3400 ignored annotation: exon 3401..3533 ignored annotation: intron 3534..5002 ignored annotation: repeat_region 3541..3557 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(3558..3971) ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 3972..3988 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Alu" ignored annotation: exon 5003..5214 ignored annotation: intron 5215..6107 ignored annotation: exon 6108..6240 ignored annotation: intron 6241..6864 ignored annotation: exon 6865..6962 ignored annotation: intron 6963..7770 ignored annotation: exon 7771..7900 ignored annotation: intron 7901..11011 ignored annotation: repeat_region 8870..8881 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region 8882..9139 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region 9140..9151 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region 9169..9356 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 9546..9553 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(9554..9773) ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 9774..9781 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Alu" ignored annotation: exon 11012..11226 ignored annotation: intron 11227..14441 ignored annotation: repeat_region 11798..11811 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 11812..11950 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 11951..11964 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Alu" ignored annotation: exon 14442..14574 ignored annotation: intron 14575..16793 ignored annotation: exon 16794..16891 ignored annotation: intron 16892..18255 ignored annotation: repeat_region complement(17447..17721) ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: exon 18256..18388 ignored annotation: intron 18389..19145 ignored annotation: exon 19146..19369 ignored annotation: intron 19370..20928 ignored annotation: exon 20929..21061 ignored annotation: intron 21062..22191 ignored annotation: exon 22192..22252 ignored annotation: terminator 22210..22212 ignored annotation: 3'UTR join(22210..22252,23018..23143) ignored annotation: intron 22253..23017 ignored annotation: exon 23018..23143 ignored annotation: polyA_signal 23118..23123 ignored annotation: polyA_site 23143 ignored annotation: repeat_region 23590..23596 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region complement(23597..23844) ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region 23845..23851 ignored annotation: /rpt_type=flanking ignored annotation: /rpt_family="Kpn" ignored annotation: BASE COUNT 7364 a 4268 c 4529 g 8293 t mRNA range 888..1006 mRNA range 3084..3132 mRNA range 3401..3533 mRNA range 5003..5214 mRNA range 6108..6240 mRNA range 6865..6962 mRNA range 7771..7900 mRNA range 11012..11226 mRNA range 14442..14574 mRNA range 16794..16891 mRNA range 18256..18388 mRNA range 19146..19369 mRNA range 20929..21061 mRNA range 22192..22252 mRNA range 23018..23143 CDS range 919..1006 CDS range 3084..3132 CDS range 3401..3533 CDS range 5003..5214 CDS range 6108..6240 CDS range 6865..6962 CDS range 7771..7900 CDS range 11012..11226 CDS range 14442..14574 CDS range 16794..16891 CDS range 18256..18388 CDS range 19146..19369 CDS range 20929..21061 CDS range 22192..22212 seq_ini = 1 seq_fin = 24454 i = 22212 last codon bas = ac[tga]agc last codon lab = EF[DEF]YYY === HSU51899 === locus = HSU51899 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 330..336 mRNA = 362..425,2572..2633,5576..5608,6755..7250,9018..9182 ignored annotation: /product="kappa-casein" ignored annotation: exon 362..425 ignored annotation: /number=1 ignored annotation: intron 426..2571 ignored annotation: /number=1 ignored annotation: exon 2572..2633 ignored annotation: /number=2 CDS = 2580..2633,5576..5608,6755..7216 ignored annotation: /codon_start=1 ignored annotation: /product="kappa-casein" ignored annotation: /db_xref="PID:g1245482" translation = MKSFLLVVNALALTLPFLAVEVQNQKQPACHENDERPFYQKTAPYVPMYYVPNSYPYYGTNLYQRRPAIAINNPYVPRTYYANPAVVRPHAQIPQRQYLPNSHPPTVVRLPNLHPSFIAIPPKKIQDKIIIPTINTIATVEPTPAPATEPTVDSVVTPEAFSESIITSTPETTTVAVTPPTA ignored annotation: intron 2634..5575 ignored annotation: /number=2 ignored annotation: exon 5576..5608 ignored annotation: /number=3 ignored annotation: intron 5609..6754 ignored annotation: /number=3 ignored annotation: exon 6755..7250 ignored annotation: /number=4 ignored annotation: intron 7251..9017 ignored annotation: /number=4 ignored annotation: exon 9018..9182 ignored annotation: /number=5 ignored annotation: BASE COUNT 3308 a 1750 c 1429 g 3357 t mRNA range 362..425 mRNA range 2572..2633 mRNA range 5576..5608 mRNA range 6755..7250 mRNA range 9018..9182 CDS range 2580..2633 CDS range 5576..5608 CDS range 6755..7216 seq_ini = 1 seq_fin = 9844 i = 7216 last codon bas = ca[taa]aaa last codon lab = EF[DEF]YYY === HSU52427 === locus = HSU52427 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /map="11q13.1" ignored annotation: misc_feature 1..831 ignored annotation: /note="5' flanking region" ignored annotation: repeat_region 238..312 ignored annotation: /rpt_unit=(GATA)n mRNA = 832..949,1083..1192,2158..2317,4475..4525,4633..4698,4946..5017,5536..5569,5787..6003 ignored annotation: /gene="rpb-7" ignored annotation: /product="RNA polymerase II seventh subunit" ignored annotation: gene 832..6003 ignored annotation: /gene="rpb-7" ignored annotation: exon 832..949 ignored annotation: /gene="rpb-7" ignored annotation: /number=1 CDS = 938..949,1083..1192,2158..2317,4475..4525,4633..4698,4946..5017,5536..5569,5787..5800 ignored annotation: /gene="rpb-7" ignored annotation: /note="seventh largest subunit" ignored annotation: /codon_start=1 ignored annotation: /product="RNA polymerase II seventh subunit" ignored annotation: /db_xref="PID:g1924974" translation = MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS ignored annotation: intron 950..1082 ignored annotation: /gene="rpb-7" ignored annotation: /number=1 ignored annotation: exon 1083..1192 ignored annotation: /gene="rpb-7" ignored annotation: /number=2 ignored annotation: intron 1193..2157 ignored annotation: /gene="rpb-7" ignored annotation: /number=2 ignored annotation: exon 2158..2317 ignored annotation: /gene="rpb-7" ignored annotation: /number=3 ignored annotation: intron 2318..4474 ignored annotation: /gene="rpb-7" ignored annotation: /number=3 ignored annotation: exon 4475..4525 ignored annotation: /gene="rpb-7" ignored annotation: /number=4 ignored annotation: intron 4526..4632 ignored annotation: /gene="rpb-7" ignored annotation: /number=4 ignored annotation: exon 4633..4698 ignored annotation: /gene="rpb-7" ignored annotation: /number=5 ignored annotation: intron 4699..4945 ignored annotation: /gene="rpb-7" ignored annotation: /number=5 ignored annotation: exon 4946..5017 ignored annotation: /gene="rpb-7" ignored annotation: /number=6 ignored annotation: intron 5018..5535 ignored annotation: /gene="rpb-7" ignored annotation: /number=6 ignored annotation: exon 5536..5569 ignored annotation: /gene="rpb-7" ignored annotation: /number=7 ignored annotation: intron 5570..5786 ignored annotation: /gene="rpb-7" ignored annotation: /number=7 ignored annotation: exon 5787..6003 ignored annotation: /gene="rpb-7" ignored annotation: /number=8 ignored annotation: misc_feature 6004..6051 ignored annotation: /note="3' flanking region" ignored annotation: BASE COUNT 1360 a 1472 c 1565 g 1653 t 1 others 5221 aggcggccgc caccacacct ggctaatttt ttatatttgt tagwacagac agggtttcac ** orig/raws/HSU52427:188: invalid base letter "w" === HSU53874 === locus = HSU53874 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /chromosome="7" ignored annotation: /map="7q31-35" mRNA = <11..362,647..815,1137..1302,1910..2149,3139..>3258 CDS = 11..362,647..815,1137..1302,1910..2149,3139..3258 ignored annotation: /note="G-coupled-protein receptor family; photovisual ignored annotation: pigment" ignored annotation: /codon_start=1 ignored annotation: /product="blue cone pigment" ignored annotation: /db_xref="PID:g2138076" translation = MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN ignored annotation: exon <11..362 ignored annotation: /number=1 ignored annotation: exon 647..815 ignored annotation: /number=2 ignored annotation: exon 1137..1302 ignored annotation: /number=3 ignored annotation: repeat_region 1541..1812 ignored annotation: /rpt_family="Alu" ignored annotation: /rpt_type=dispersed ignored annotation: exon 1910..2149 ignored annotation: /number=4 ignored annotation: repeat_region 2322..2497 ignored annotation: /rpt_family="MER13" ignored annotation: /rpt_type=dispersed ignored annotation: exon 3139..>3258 ignored annotation: /number=5 ignored annotation: BASE COUNT 864 a 791 c 807 g 808 t mRNA range 11..362 mRNA range 647..815 mRNA range 1137..1302 mRNA range 1910..2149 mRNA range 3139..3258 CDS range 11..362 CDS range 647..815 CDS range 1137..1302 CDS range 1910..2149 CDS range 3139..3258 seq_ini = 1 seq_fin = 3270 i = 3258 last codon bas = ac[tga]gga last codon lab = EF[DEF]NNN === HSU56438 === locus = HSU56438 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="2" ignored annotation: /map="2p21-22" mRNA = 3070..3414,3805..4848,7881..11587 ignored annotation: /gene="CYP1B1" ignored annotation: /product="dioxin-inducible cytochrome P450" ignored annotation: gene join(3806..4848,7881..8469) ignored annotation: /gene="CYP1B1" CDS = 3806..4848,7881..8469 ignored annotation: /gene="CYP1B1" ignored annotation: /codon_start=1 ignored annotation: /product="dioxin-inducible cytochrome P450" ignored annotation: /db_xref="PID:g1663556" translation = MGTSLSPNDPWPLNPLSIQQTTLLLLLSVLATVHVGQRLLRQRRRQLRSAPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIKPKSFKVNVTLRESMELLDSAVQNLQAKETCQ ignored annotation: BASE COUNT 3238 a 2803 c 2832 g 3304 t mRNA range 3070..3414 mRNA range 3805..4848 mRNA range 7881..11587 CDS range 3806..4848 CDS range 7881..8469 seq_ini = 1 seq_fin = 12177 i = 8469 last codon bas = aa[taa]gaa last codon lab = EF[DEF]YYY === HSU57623 === locus = HSU57623 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 1248..1351 ignored annotation: /number=1 CDS = 1279..1351,4738..4910,6800..6901,8339..8392 ignored annotation: /codon_start=1 ignored annotation: /product="fatty acid binding protein FABP" ignored annotation: /db_xref="PID:g1377854" translation = MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA ignored annotation: intron 1352..4737 ignored annotation: /number=1 ignored annotation: exon 4738..4910 ignored annotation: /number=2 ignored annotation: intron 4911..6799 ignored annotation: /number=2 ignored annotation: exon 6800..6901 ignored annotation: /number=3 ignored annotation: intron 6902..8338 ignored annotation: /number=3 ignored annotation: exon 8339..8622 ignored annotation: /number=4 ignored annotation: BASE COUNT 2313 a 2265 c 2351 g 2241 t // ** orig/raws/HSU57623:207: missing "mRNA" entry === HSU60477 === locus = HSU60477 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="15" mRNA = <1..442,1974..2501,5226..>5500 ignored annotation: /gene="TFCOUP2" ignored annotation: gene 1..5500 ignored annotation: /gene="TFCOUP2" CDS = 1..442,1974..2501,5226..5500 ignored annotation: /gene="TFCOUP2" ignored annotation: /note="nuclear factor; also called chicken ovalbumin ignored annotation: upstream promoter transcription factor II, COUP-TFII; gene ignored annotation: also called ARP1" ignored annotation: /codon_start=1 ignored annotation: /product="apoliprotein AI regulatory protein-1" ignored annotation: /db_xref="PID:g1575343" translation = MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ ignored annotation: BASE COUNT 1214 a 1528 c 1417 g 1341 t mRNA range 1..442 mRNA range 1974..2501 mRNA range 5226..5500 CDS range 1..442 CDS range 1974..2501 CDS range 5226..5500 seq_ini = 1 seq_fin = 5500 i = 5500 last codon bas = aa[taa] last codon lab = EF[DEF] === HSU60669 === locus = HSU60669 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="20" ignored annotation: /map="20q13.2-13.3" ignored annotation: enhancer complement(973..987) ignored annotation: /gene="CYP24" ignored annotation: /note="enhancer 2; VDREd" ignored annotation: gene complement(973..2424) ignored annotation: /gene="CYP24" ignored annotation: enhancer complement(1094..1117) ignored annotation: /gene="CYP24" ignored annotation: /note="VDREp" ignored annotation: TATA_signal 1233..1238 ignored annotation: /gene="CYP24" ignored annotation: exon 1263..1922 ignored annotation: /gene="CYP24" ignored annotation: /number=1 ignored annotation: prim_transcript <1263..2424 ignored annotation: /gene="CYP24" mRNA = <1263..1922,2129..2316 ignored annotation: /gene="CYP24" CDS = 1664..1922,2129..2184 ignored annotation: /gene="CYP24" ignored annotation: /codon_start=1 ignored annotation: /product="1 alpha,25-dihydroxyvitamin D3 24-hydroxylase" ignored annotation: /db_xref="PID:g1418241" translation = MSSPISKSRSLAAFLQQLRSPRQPPRLVTSTAYTSPQPREVPVCPLTAGGETQNAAALPGPTSWPLLASLLPDSLERGSQETARHPGGVPQEVWQDFPHEVGFL ignored annotation: intron 1923..2128 ignored annotation: /gene="CYP24" ignored annotation: /number=1 ignored annotation: exon 2129..2316 ignored annotation: /gene="CYP24" ignored annotation: /number=2 ignored annotation: intron 2317..2424 ignored annotation: /gene="CYP24" ignored annotation: /number=2 ignored annotation: BASE COUNT 514 a 781 c 656 g 473 t mRNA range 1263..1922 mRNA range 2129..2316 CDS range 1664..1922 CDS range 2129..2184 seq_ini = 1 seq_fin = 2424 i = 2184 last codon bas = tt[tga]gtc last codon lab = EF[DEF]YYY === HSU61537 === locus = HSU61537 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="5" ignored annotation: /map="5q34-35" ignored annotation: /tissue_type="smooth muscle" mRNA = 1..179,1643..1814,6519..6821 ignored annotation: /product="potassium channel beta subunit" CDS = 46..179,1643..1814,6519..6788 ignored annotation: /note="calcium-activated large conductance potassium ignored annotation: channel" ignored annotation: /codon_start=1 ignored annotation: /product="potassium channel beta subunit" ignored annotation: /db_xref="PID:g2209019" translation = MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNIRDQEELKGKKVPQYPCLWVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK ignored annotation: BASE COUNT 1632 a 1787 c 1691 g 1711 t mRNA range 1..179 mRNA range 1643..1814 mRNA range 6519..6821 CDS range 46..179 CDS range 1643..1814 CDS range 6519..6788 seq_ini = 1 seq_fin = 6821 i = 6788 last codon bas = ag[tag]agc last codon lab = EF[DEF]YYY === HSU65896 === locus = HSU65896 ignored annotation: /organism="Homo sapiens" ignored annotation: /note="hepatocyte" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="2" ignored annotation: /map="2p12" mRNA = 649..774,1188..1358,3099..3257,3569..3734,5915..5993,6585..6691,7869..8032,8678..8943,9105..9236,9608..9759,10194..10363,10565..10695,11103..11250,11425..11620,12049..12331 ignored annotation: /product="gamma-glutymyl carboxylase" CDS = 732..774,1188..1358,3099..3257,3569..3734,5915..5993,6585..6691,7869..8032,8678..8943,9105..9236,9608..9759,10194..10363,10565..10695,11103..11250,11425..11620,12049..12241 ignored annotation: /codon_start=1 ignored annotation: /product="gamma-glutymyl carboxylase" ignored annotation: /db_xref="PID:g1513200" translation = MAVSAGSARTSPSSDKVQKDKAELISGPRQDSRIGKLLGFEWTDLSSWRRLVTLLNRPTDPASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPGLRHQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGRTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVTEPQIYFDIWVSINDRFQQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPLLEGEVKGGPEPTPLVQTFLRRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCISLRNLILGRPSLEQLAQEVTYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF ignored annotation: variation 8762 ignored annotation: /note="polymorphism resulting in a Gln to Arg substitution ignored annotation: at amino acid 325; 121 chromosomes tested, heterozygosity ignored annotation: .32" ignored annotation: /replace="a" ignored annotation: BASE COUNT 3353 a 3033 c 3450 g 3861 t mRNA range 649..774 mRNA range 1188..1358 mRNA range 3099..3257 mRNA range 3569..3734 mRNA range 5915..5993 mRNA range 6585..6691 mRNA range 7869..8032 mRNA range 8678..8943 mRNA range 9105..9236 mRNA range 9608..9759 mRNA range 10194..10363 mRNA range 10565..10695 mRNA range 11103..11250 mRNA range 11425..11620 mRNA range 12049..12331 CDS range 732..774 CDS range 1188..1358 CDS range 3099..3257 CDS range 3569..3734 CDS range 5915..5993 CDS range 6585..6691 CDS range 7869..8032 CDS range 8678..8943 CDS range 9105..9236 CDS range 9608..9759 CDS range 10194..10363 CDS range 10565..10695 CDS range 11103..11250 CDS range 11425..11620 CDS range 12049..12241 seq_ini = 1 seq_fin = 13697 i = 12241 last codon bas = tc[tga]agg last codon lab = EF[DEF]YYY === HSU66711 === locus = HSU66711 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="P26,P36,P40,P19, and overlapping B18,B7,PCR5." ignored annotation: /map="8q24.3" ignored annotation: /chromosome="8" mRNA = 1168..1245,3543..3651,3972..4091,4223..5060 ignored annotation: /gene="9804" ignored annotation: gene 1168..5060 ignored annotation: /gene="9804" ignored annotation: exon 1168..1245 ignored annotation: /gene="9804" ignored annotation: intron 1246..3542 ignored annotation: /gene="9804" ignored annotation: repeat_region complement(2870..3188) ignored annotation: /rpt_family="Alu" ignored annotation: exon 3543..3651 ignored annotation: /gene="9804" CDS = 3600..3651,3972..4091,4223..4446 ignored annotation: /gene="9804" ignored annotation: /note="similar to mouse Ly-6 antigen TSA-1/SCA-2" ignored annotation: /codon_start=1 ignored annotation: /product="9804" ignored annotation: /db_xref="PID:g1519440" translation = MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLLPALLRFGP ignored annotation: intron 3652..3971 ignored annotation: /gene="9804" ignored annotation: exon 3972..4091 ignored annotation: /gene="9804" ignored annotation: intron 4092..4222 ignored annotation: /gene="9804" ignored annotation: exon 4223..5060 ignored annotation: /gene="9804" ignored annotation: BASE COUNT 980 a 1886 c 1620 g 1037 t 20 others 241 acacacagbc accacacaca ctcactcatg caaaacacac acacagccac attgactgca ** orig/raws/HSU66711:78: invalid base letter "b" === HSU66875 === locus = HSU66875 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="16" ignored annotation: /map="16p" ignored annotation: repeat_unit 296..414 ignored annotation: /rpt_type=dispersed ignored annotation: /rpt_family="Alu" ignored annotation: 5'UTR 727..801 ignored annotation: /gene="COX6AH" mRNA = 727..874,976..1112,1281..1392 ignored annotation: /gene="COX6AH" ignored annotation: exon 727..874 ignored annotation: /gene="COX6AH" ignored annotation: /number=1 ignored annotation: gene 727..1392 ignored annotation: /gene="COX6AH" ignored annotation: transit_peptide 802..837 ignored annotation: /gene="COX6AH" CDS = 802..874,976..1112,1281..1364 ignored annotation: /gene="COX6AH" ignored annotation: /EC_number="1.9.3.1" ignored annotation: /codon_start=1 ignored annotation: /product="cytochrome oxidase subunit VIa heart isoform ignored annotation: precursor" ignored annotation: /db_xref="PID:g2138178" translation = MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP ignored annotation: mat_peptide join(838..874,976..1112,1281..1361) ignored annotation: /gene="COX6AH" ignored annotation: /EC_number="1.9.3.1" ignored annotation: /product="cytochrome oxidase subunit VIa heart isoform" ignored annotation: intron 875..975 ignored annotation: /gene="COX6AH" ignored annotation: /number=1 ignored annotation: exon 976..1112 ignored annotation: /gene="COX6AH" ignored annotation: /number=2 ignored annotation: intron 1113..1280 ignored annotation: /gene="COX6AH" ignored annotation: /number=2 ignored annotation: exon 1281..1392 ignored annotation: /gene="COX6AH" ignored annotation: /number=3 ignored annotation: 3'UTR 1365..1392 ignored annotation: /gene="COX6AH" ignored annotation: BASE COUNT 345 a 472 c 450 g 302 t mRNA range 727..874 mRNA range 976..1112 mRNA range 1281..1392 CDS range 802..874 CDS range 976..1112 CDS range 1281..1364 seq_ini = 1 seq_fin = 1569 i = 1364 last codon bas = cc[tga]ggc last codon lab = EF[DEF]YYY === HSU70732 === locus = HSU70732 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="8" ignored annotation: /map="8q24.3" mRNA = <1..429,562..651,733..841,973..1106,1222..1465,1820..1899,1967..2103,2203..2377,2471..2626,2701..2813,2880..>3136 ignored annotation: /gene="GPT" ignored annotation: 5'UTR <1..267 ignored annotation: /gene="GPT" ignored annotation: gene 1..3136 ignored annotation: /gene="GPT" CDS = 268..429,562..651,733..841,973..1106,1222..1465,1820..1899,1967..2103,2203..2377,2471..2626,2701..2813,2880..2970 ignored annotation: /gene="GPT" ignored annotation: /EC_number="2.6.1.2" ignored annotation: /codon_start=1 ignored annotation: /product="glutamate pyruvate transaminase" ignored annotation: /db_xref="PID:g1763096" translation = MASSTGDRSQAVRHGLRAKVLTLDGMNPRVRRVEYAVRGPIVQRALELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPNFPDDAKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALGQARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQFHSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSVRLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKFTLEYS ignored annotation: allele 307 ignored annotation: /gene="GPT" ignored annotation: /note="creates an amino acid change from His (type 1 GPT) ignored annotation: to Asn (type 2 GPT)" ignored annotation: /replace="a" ignored annotation: 3'UTR 2971..>3136 ignored annotation: /gene="GPT" ignored annotation: BASE COUNT 456 a 1135 c 1009 g 534 t 2 others 1681 ttccccgccg ccccgcccca ctcctcccca cccaacgtgc gccctggccc ggcnngccgg ** orig/raws/HSU70732:91: invalid base letter "n" === HSU73002 === locus = HSU73002 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="7" ignored annotation: /map="7q31.3" ignored annotation: gene 37..2841 ignored annotation: /gene="ARF5" CDS = 37..103,620..700,1027..1136,1607..1678,2505..2630,2755..2841 ignored annotation: /gene="ARF5" ignored annotation: /codon_start=1 ignored annotation: /product="ADP-ribosylation factor 5" ignored annotation: /db_xref="PID:g2088529" translation = MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR ignored annotation: BASE COUNT 601 a 931 c 869 g 835 t 4 others 721 gggagcggga gcgccgcggn cgggccctcg cggggtctgc tcccagttct gccacttttc ** orig/raws/HSU73002:54: invalid base letter "n" === HSU75285 === locus = HSU75285 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="17q25" mRNA = 2762..2921,3174..3283,5158..5275,11955..13185 ignored annotation: /product="apoptosis inhibitor survivin" CDS = 2811..2921,3174..3283,5158..5275,11955..12044 ignored annotation: /function="IAP-related inhibitor of apoptosis ignored annotation: over-expressed in common human cancers, in vivo" ignored annotation: /note="Recombinant expression of survivin counteracts ignored annotation: apoptosis induced by growth factor (IL-3) withdrawal in ignored annotation: pre-B cell transfectants. Survivin expression is ignored annotation: developmentally regulated: present during fetal ignored annotation: development but undetectable in terminally differentiated ignored annotation: normal adult tissues, survivin is abundantly expressed in ignored annotation: transformed cell lines and in all the most common solid ignored annotation: cancers and in 50% of high-grade non Hodgkin's lymphoma. ignored annotation: The coding strand of the survivin gene product is highly ignored annotation: homologous and complementary to the sequence of Effector ignored annotation: cell Protease Receptor-1 (EPR-1) encoded by GenBank ignored annotation: Accession Numbers L26245 and L32866. Single-strand ignored annotation: specific probes identify two separate mRNA transcripts for ignored annotation: EPR-1 and survivin with distinct molecular sizes and ignored annotation: non-overlapping distribution in fetal and adult tissues" ignored annotation: /codon_start=1 ignored annotation: /product="apoptosis inhibitor survivin" ignored annotation: /db_xref="PID:g2315863" translation = MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD ignored annotation: polyA_site 13185..13186 ignored annotation: BASE COUNT 3482 a 3488 c 3888 g 3938 t mRNA range 2762..2921 mRNA range 3174..3283 mRNA range 5158..5275 mRNA range 11955..13185 CDS range 2811..2921 CDS range 3174..3283 CDS range 5158..5275 CDS range 11955..12044 seq_ini = 1 seq_fin = 14796 i = 12044 last codon bas = at[tga]ggc last codon lab = EF[DEF]YYY === HSU75898 === locus = HSU75898 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="11" ignored annotation: /cell_type="lymphocyte" mRNA = 17..207,725..1377 ignored annotation: /gene="HSPB2" ignored annotation: gene 17..1377 ignored annotation: /gene="HSPB2" CDS = 114..207,725..1179 ignored annotation: /gene="HSPB2" ignored annotation: /note="similar to small heat shock protein" ignored annotation: /codon_start=1 ignored annotation: /product="HSPB2" ignored annotation: /db_xref="PID:g2586093" translation = MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIVEP ignored annotation: polyA_signal 1357..1362 ignored annotation: /gene="HSPB2" ignored annotation: BASE COUNT 241 a 537 c 359 g 331 t mRNA range 17..207 mRNA range 725..1377 CDS range 114..207 CDS range 725..1179 seq_ini = 1 seq_fin = 1468 i = 1179 last codon bas = cc[tga]ttg last codon lab = EF[DEF]YYY === HSU78190 === locus = HSU78190 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="15" ignored annotation: /map="15q15" mRNA = <356..485,2096..2190,3495..3981 ignored annotation: /note="5' end based on comparison with EST, GenBank ignored annotation: Accession Number AA100037" CDS = 450..485,2096..2190,3495..3618 ignored annotation: /function="mediates tetrahydrobiopterin inhibition of GTP ignored annotation: cyclohydrolase I" ignored annotation: /codon_start=1 ignored annotation: /product="GTP cyclohydrolase I feedback regulatory ignored annotation: protein" ignored annotation: /db_xref="PID:g1698997" translation = MPYLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNFYEYYVDDPPRIVLDKLERRGFRVLSMTGVGQTLVWCLHKE ignored annotation: polyA_signal 3951..3957 ignored annotation: polyA_site 3982 ignored annotation: /note="based on comparison with EST, Genbank Accession ignored annotation: Number N89728" ignored annotation: BASE COUNT 829 a 1207 c 1128 g 836 t mRNA range 356..485 mRNA range 2096..2190 mRNA range 3495..3981 CDS range 450..485 CDS range 2096..2190 CDS range 3495..3618 seq_ini = 1 seq_fin = 4000 i = 3618 last codon bas = ag[tga]cct last codon lab = EF[DEF]YYY === HSU79415 === locus = HSU79415 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="11q14.1-q14.3" ignored annotation: /chromosome="11" ignored annotation: gene 1..4715 ignored annotation: /gene="DPP-I" CDS = 1271..2159,3805..4307 ignored annotation: /gene="DPP-I" ignored annotation: /EC_number="3.4.14.1" ignored annotation: /note="cathepsin C" ignored annotation: /codon_start=1 ignored annotation: /product="prepro dipeptidyl peptidase I" ignored annotation: /db_xref="PID:g1947071" translation = MGAGPSLLLAALLLLLSGDGAVRCDTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVGTASENVYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL ignored annotation: intron 2160..3804 ignored annotation: /gene="DPP-I" ignored annotation: BASE COUNT 1390 a 993 c 1070 g 1262 t // ** orig/raws/HSU79415:132: missing "mRNA" entry === HSU80184 === locus = HSU80184 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="17" ignored annotation: /map="17p11.2" mRNA = 208..305,1914..2024,2336..2407,3670..3750,4079..4164,4251..4412,4751..4854,5214..5389,5475..5632,6377..6461,6787..6934,7117..7253,7456..7668,7916..8095,9525..9607,9732..9806,10050..10133,10212..10383,10900..11004,11085..11276,11576..11764,11881..12020,12105..12339,12471..12625,12711..12771,12871..12999,13083..13189,13273..13378,13514..13579,13661..14092 ignored annotation: /gene="FLII" ignored annotation: gene 208..14092 ignored annotation: /gene="FLII" CDS = 243..305,1914..2024,2336..2407,3670..3750,4079..4164,4251..4412,4751..4854,5214..5389,5475..5632,6377..6461,6787..6934,7117..7253,7456..7668,7916..8095,9525..9607,9732..9806,10050..10133,10212..10383,10900..11004,11085..11276,11576..11764,11881..12020,12105..12339,12471..12625,12711..12771,12871..12999,13083..13189,13273..13378,13514..13579,13661..13795 ignored annotation: /gene="FLII" ignored annotation: /note="see GenBank Accession Number U01184 for cDNA; ignored annotation: similar to Drosophila melanogaster fliI in GenBank ignored annotation: Accession Number U01182 and Caenorhabditis elegans fliI ignored annotation: homolog in GenBank Accession Number U01183" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g2138290" translation = MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNNLTTLHGELSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSHNQLTECPRELENAKNMLVLNLSHNSIDTIPNQLFINLTDLLYLDLSENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICKLSKLKKLYLNSNKLDFDGLPSGIGKLTNLEEFMAANNNLELVPESLCRCPKLRKLVLNKNHLVTLPEAIHFLTEIEVLDVRENPNLVMPPKPADRAAEWYNIDFSLQNQLRLAGASPATVAAAAAAGSGPKDPMARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNKKQEESADARAPSGKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEAFHGKFYEADCYIVLKTFLDDSGSLNWEIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGTSLDPRFVFLLDRGLDIYVWRGAQATLSSTTKARLFAEKINKNERKGKAEITLLVQGQELPEFWEALGGEPSEIKKHVPEDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKQRPKVELMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHATVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQSPGLSGKVKRDAEKKDQMKADLTALFLPRQPPMSLAEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEKKEDKEEKAEGKEGEEATAEAEEKQPEEDFQCIVYFWQGREASNMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFIIHRGKRKAVQGAQQPSLYQIRTNGSALCTRCIQINTDSSLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNTMFDTSYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWSAFCKALA ignored annotation: polyA_signal 14068..14073 ignored annotation: /gene="FLII" ignored annotation: polyA_site 14092 ignored annotation: /gene="FLII" ignored annotation: /evidence=experimental ignored annotation: BASE COUNT 2879 a 4090 c 4328 g 2834 t mRNA range 208..305 mRNA range 1914..2024 mRNA range 2336..2407 mRNA range 3670..3750 mRNA range 4079..4164 mRNA range 4251..4412 mRNA range 4751..4854 mRNA range 5214..5389 mRNA range 5475..5632 mRNA range 6377..6461 mRNA range 6787..6934 mRNA range 7117..7253 mRNA range 7456..7668 mRNA range 7916..8095 mRNA range 9525..9607 mRNA range 9732..9806 mRNA range 10050..10133 mRNA range 10212..10383 mRNA range 10900..11004 mRNA range 11085..11276 mRNA range 11576..11764 mRNA range 11881..12020 mRNA range 12105..12339 mRNA range 12471..12625 mRNA range 12711..12771 mRNA range 12871..12999 mRNA range 13083..13189 mRNA range 13273..13378 mRNA range 13514..13579 mRNA range 13661..14092 CDS range 243..305 CDS range 1914..2024 CDS range 2336..2407 CDS range 3670..3750 CDS range 4079..4164 CDS range 4251..4412 CDS range 4751..4854 CDS range 5214..5389 CDS range 5475..5632 CDS range 6377..6461 CDS range 6787..6934 CDS range 7117..7253 CDS range 7456..7668 CDS range 7916..8095 CDS range 9525..9607 CDS range 9732..9806 CDS range 10050..10133 CDS range 10212..10383 CDS range 10900..11004 CDS range 11085..11276 CDS range 11576..11764 CDS range 11881..12020 CDS range 12105..12339 CDS range 12471..12625 CDS range 12711..12771 CDS range 12871..12999 CDS range 13083..13189 CDS range 13273..13378 CDS range 13514..13579 CDS range 13661..13795 seq_ini = 1 seq_fin = 14131 i = 13795 last codon bas = cc[taa]gac last codon lab = EF[DEF]YYY === HSU82083 === locus = HSU82083 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="5" ignored annotation: /map="5q35" ignored annotation: gene 2587..19328 ignored annotation: /gene="mGluR6" CDS = 2766..3269,5635..5851,6158..6293,6965..7119,8303..8443,8564..8764,10716..10861,10945..11568,14465..14776,15822..16019 ignored annotation: /gene="mGluR6" ignored annotation: /codon_start=1 ignored annotation: /product="metabotropic glutamate receptor 6 protein" ignored annotation: /db_xref="PID:g2231438" translation = MARPRRAREPLLVALLPLAWLAQAGLARAAGSVRLAGGLTLGGLFPVHARGAAGRACGPLKKEQGVHRLEAMLYALDRVNADPELLPGVRLGARLLDTCSRDTYALEQALSFVQALIRGRGDGDEVGVRCPGGVPPLRPAPPERVVAVVGASASSVSIMVANVLRLFAIPQISYASTAPELSDSTRYDFFSRVVPPDSYQAQAMVDIVRALGWNYVSTLASEGNYGESGVEAFVQISREAGGVCIAQSIKIPREPKPGEFSKVIRRLMETPNARGIIIFANEDDIRRVLEAARQANLTGHFLWVGSDSWGAKTSPILSLEDVAVGAITILPKRASIDGFDQYFMTRSLENNRRNIWFAEFWEENFNCKLTSSGTQSDDSTRKCTGEERIGRDSTYEQEGKVQFVIDAVYAIAHALHSMHQALCPGHTGLCPAMEPTDGRMLLQYIRAVRFNGSAGTPVMFNENGDAPGRYDIFQYQATNGSASSGGYQAVGQWAETLRLDVEALQWSGDPHEVPSSLCSLPCGPGERKKMVKGVPCCWHCEACDGYRFQVDEFTCEACPGDMRPTPNHTGCRPTPVVRLSWSSPWAAPPLLLAVLGIVATTTVVATFVRYNNTPIVRASGRELSYVLLTGIFLIYAITFLMVAEPGAAVCAARRLFLGLGTTLSYSALLTKTNRIYRIFEQGKRSVTPPPFISPTSQLVITFSLTSLQVVGMIAWLGARPPHSVIDYEEQRTVDPEQARGVLKCDMSDLSLIGCLGYSLLLMVTCTVYAIKARGVPETFNEAKPIGFTMYTTCIIWLAFVPIFFGTAQSAEKIYIQTTTLTVSLSLSASVSLGMLYVPKTYVILFHPEQNVQKRKRSLKATSTVAAPPKGEDAEAHK ignored annotation: BASE COUNT 4472 a 6210 c 5737 g 5297 t // ** orig/raws/HSU82083:418: missing "mRNA" entry === HSU82827 === locus = HSU82827 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="7" ignored annotation: gene 109..1987 ignored annotation: /gene="HOXA13" CDS = 109..1030,1743..1987 ignored annotation: /gene="HOXA13" ignored annotation: /codon_start=1 ignored annotation: /product="transcription factor HOXA13" ignored annotation: /db_xref="PID:g1832353" translation = MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPPPNAIKSCPQPPSAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS ignored annotation: misc_feature 220..507 ignored annotation: /gene="HOXA13" ignored annotation: /note="encodes poly-alanine repeat region" ignored annotation: BASE COUNT 356 a 693 c 614 g 351 t // ** orig/raws/HSU82827:78: missing "mRNA" entry === HSU86758 === locus = HSU86758 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="16" ignored annotation: /map="16p13.3" mRNA = 2930..4060,4132..4320,4416..4565,4699..4749,4860..4934,5187..5576 ignored annotation: /gene="NTN2L" ignored annotation: /product="netrin-2 like protein" ignored annotation: gene 2930..5576 ignored annotation: /gene="NTN2L" ignored annotation: exon 2930..4060 ignored annotation: /gene="NTN2L" ignored annotation: /number=1 CDS = 3133..4060,4132..4320,4416..4565,4699..4749,4860..4934,5187..5536 ignored annotation: /gene="NTN2L" ignored annotation: /note="neural chemokine" ignored annotation: /codon_start=1 ignored annotation: /product="netrin-2 like protein" ignored annotation: /db_xref="PID:g2052393" translation = MPGWPWGLLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKFCKKDYAVQVAVGARGEARGAWTRFPVAVLAVFRSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGGGPGAAAGGAGGRGPGLIAARGSLVLPWRDAWTRRLRRLQRRERRGRCSAA ignored annotation: exon 4132..4320 ignored annotation: /gene="NTN2L" ignored annotation: /number=2 ignored annotation: exon 4416..4565 ignored annotation: /gene="NTN2L" ignored annotation: /number=3 ignored annotation: exon 4699..4749 ignored annotation: /gene="NTN2L" ignored annotation: /number=4 ignored annotation: exon 4860..4934 ignored annotation: /gene="NTN2L" ignored annotation: /number=5 ignored annotation: exon 5187..5576 ignored annotation: /gene="NTN2L" ignored annotation: /number=6 ignored annotation: BASE COUNT 945 a 2508 c 2184 g 1166 t mRNA range 2930..4060 mRNA range 4132..4320 mRNA range 4416..4565 mRNA range 4699..4749 mRNA range 4860..4934 mRNA range 5187..5576 CDS range 3133..4060 CDS range 4132..4320 CDS range 4416..4565 CDS range 4699..4749 CDS range 4860..4934 CDS range 5187..5536 seq_ini = 1 seq_fin = 6803 i = 5536 last codon bas = cc[tga]gcc last codon lab = EF[DEF]YYY === HSU89387 === locus = HSU89387 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="R7it1" ignored annotation: /map="2q21" ignored annotation: /sex="female" ignored annotation: /cell_line="HeLa" ignored annotation: /cell_type="epithelial" ignored annotation: /tissue_type="cervical carcinoma" ignored annotation: /chromosome="2" mRNA = 1330..1425,6371..6551,8791..8886,11294..12822 ignored annotation: /product="RNA polymerase II subunit hsRPB4" ignored annotation: exon 1330..1425 ignored annotation: /number=1 CDS = 1353..1425,6371..6551,8791..8886,11294..11372 ignored annotation: /note="partner protein for hsRPB7" ignored annotation: /codon_start=1 ignored annotation: /product="RNA polymerase II subunit hsRPB4" ignored annotation: /db_xref="PID:g2253635" translation = MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY ignored annotation: intron 1426..6370 ignored annotation: /number=1 ignored annotation: repeat_region 2410..2690 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 2893..2937 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 4068..4361 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 5699..5914 ignored annotation: /rpt_family="Alu" ignored annotation: exon 6371..6551 ignored annotation: /number=2 ignored annotation: intron 6552..8790 ignored annotation: /number=2 ignored annotation: exon 8791..8886 ignored annotation: /number=3 ignored annotation: intron 8887..11293 ignored annotation: /number=3 ignored annotation: exon 11294..12822 ignored annotation: /number=4 ignored annotation: BASE COUNT 3443 a 2826 c 3230 g 3858 t 2 others 8341 caagcaattc tcctgcctca gcctcccgag tagntgggag tagcccgcca gtgcacccag ** orig/raws/HSU89387:205: invalid base letter "n" === HSU91522 === locus = HSU91522 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = <1..154,459..1012,1869..>2292 ignored annotation: /product="peroxin 12" ignored annotation: gene 29..2268 ignored annotation: /gene="HsPEX12" CDS = 29..154,459..1012,1869..2268 ignored annotation: /gene="HsPEX12" ignored annotation: /function="import of peroxisomal matrix proteins into ignored annotation: peroxisomes" ignored annotation: /note="HsPex12p" ignored annotation: /codon_start=1 ignored annotation: /product="peroxin 12" ignored annotation: /db_xref="PID:g1938369" translation = MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFDEIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFLVLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN ignored annotation: BASE COUNT 646 a 505 c 449 g 692 t mRNA range 1..154 mRNA range 459..1012 mRNA range 1869..2292 CDS range 29..154 CDS range 459..1012 CDS range 1869..2268 seq_ini = 1 seq_fin = 2292 i = 2268 last codon bas = ac[tga]aag last codon lab = EF[DEF]YYY === HSU95012 === locus = HSU95012 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="14" ignored annotation: /map="14q11.1-q11.2" mRNA = <2165..2545,3445..>3777 ignored annotation: /gene="NRL" ignored annotation: /product="neural retinal-specific leucine zipper protein" ignored annotation: gene <2165..>3777 ignored annotation: /gene="NRL" CDS = 2165..2545,3445..3777 ignored annotation: /gene="NRL" ignored annotation: /note="involved in rhodopsin regulation; leucine zipper ignored annotation: family transcription factor; bZIP transcription factor; ignored annotation: Maf oncogene family; mRNA sequence was deposited with ignored annotation: GenBank Accession Number M81840; similar to M. musculus ignored annotation: NRL protein encoded by GenBank Accession Number L14935" ignored annotation: /codon_start=1 ignored annotation: /product="neural retinal-specific leucine zipper protein" ignored annotation: /db_xref="PID:g2232011" translation = MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL ignored annotation: misc_feature 3445..3777 ignored annotation: /gene="NRL" ignored annotation: /note="encodes DNA binding domain" ignored annotation: BASE COUNT 1048 a 1300 c 1438 g 1151 t 3 others 4861 gcaataagct aaatgttctt gnaatttaag aagtgttcac tcttttatcc ctgnttcagg ** orig/raws/HSU95012:143: invalid base letter "n" === HSU96402 === locus = HSU96402 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /map="22q11" mRNA = <293..551,660..913,1481..>1585 ignored annotation: /gene="GSC-2" ignored annotation: /product="GSC-2" ignored annotation: gene 293..1585 ignored annotation: /gene="GSC-2" ignored annotation: exon <293..551 ignored annotation: /gene="GSC-2" ignored annotation: /number=1 CDS = 293..551,660..913,1481..1585 ignored annotation: /gene="GSC-2" ignored annotation: /note="homeobox protein" ignored annotation: /codon_start=1 ignored annotation: /product="GSC-2" ignored annotation: /db_xref="PID:g2352056" translation = MAAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGAPEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASARLLPGVKKSPKGSC ignored annotation: exon 660..913 ignored annotation: /gene="GSC-2" ignored annotation: /note="659" ignored annotation: /number=2 ignored annotation: exon 1481..>1585 ignored annotation: /gene="GSC-2" ignored annotation: /number=3 ignored annotation: BASE COUNT 308 a 763 c 794 g 335 t mRNA range 293..551 mRNA range 660..913 mRNA range 1481..1585 CDS range 293..551 CDS range 660..913 CDS range 1481..1585 seq_ini = 1 seq_fin = 2200 i = 1585 last codon bas = gc[tga]tga last codon lab = EF[DEF]NNN === HSU96846 === locus = HSU96846 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="12" ignored annotation: /map="12p12.3-p13.1" mRNA = <2186..2404,2785..2883,3415..3468,4009..4416 ignored annotation: /gene="NKG2-F" ignored annotation: gene <2186..4416 ignored annotation: /gene="NKG2-F" CDS = 2218..2404,2785..2883,3415..3468,4009..4145 ignored annotation: /gene="NKG2-F" ignored annotation: /note="NKG2 family member; contains one potential ITIM ignored annotation: motif, does not contain any lectin motif" ignored annotation: /codon_start=1 ignored annotation: /product="natural killer protein group 2-F" ignored annotation: /db_xref="PID:g2673991" translation = MNKQRGTYSEVSLAQDPKRQQRKLKGNKSSISGTKQEIFQVELNLQNASSDHQGNDKTYHCKGLLPPPEKLTAEVLGIICIVLMATVLKTIVLIPCIGVLEQNSFSLNRRMQKARHCGHCPEEWITYSNSCYYIGKERRTWEERVCWPVLRRTLICFL ignored annotation: BASE COUNT 2187 a 1117 c 1212 g 2433 t 16 others 781 tataatcatt atagatgtwa taatacttta tatttagccc agactttaaa aatgcatttt ** orig/raws/HSU96846:57: invalid base letter "w" === HSU96876 === locus = HSU96876 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="7" ignored annotation: /map="7q36" mRNA = 1273..2098,4978..5102,5665..5831,6136..6235,10635..>12003 ignored annotation: /gene="INSIG1" ignored annotation: /product="insulin induced protein 1" ignored annotation: exon 1273..2098 ignored annotation: /gene="INSIG1" ignored annotation: /number=1 ignored annotation: gene 1273..12003 ignored annotation: /gene="INSIG1" CDS = 1687..2098,4978..5102,5665..5831,6136..6235,10635..10664 ignored annotation: /gene="INSIG1" ignored annotation: /codon_start=1 ignored annotation: /product="insulin induced protein 1" ignored annotation: /db_xref="PID:g2358269" translation = MPRLHDHFWSCSCAHSARRRGPPRASTAGLPPKVGEMINVSVSGPSLLAAHGAPDADPAPRGRSAAMSGPEPGSPYPNTWHHRLLQRSLVLFSVGVVLTLVLNLLQIQRNVTLFPEEVIATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLGEPHKFKREWASVMRCIAGFGGINHASAKLDFANNVQLSLTLAALSLGLWWTFDRSRSGLGLGITIAFLATLITQFLVYNGVYQYTSPDFLYIRSWLPCIFFSGGVTVGNIGRQLAMGVPEKPHSD ignored annotation: exon 4978..5102 ignored annotation: /gene="INSIG1" ignored annotation: /number=2 ignored annotation: exon 5665..5831 ignored annotation: /gene="INSIG1" ignored annotation: /number=3 ignored annotation: exon 6136..6235 ignored annotation: /gene="INSIG1" ignored annotation: /number=4 ignored annotation: exon 10635..>12003 ignored annotation: /gene="INSIG1" ignored annotation: /number=5 ignored annotation: BASE COUNT 2935 a 2843 c 2868 g 3356 t 1 others 7201 ctcacgcctt taatcccagc actttgggag ctgaggcggn cggatcacga ggtcaggaga ** orig/raws/HSU96876:183: invalid base letter "n" === HSUBA52G === locus = HSUBA52G ignored annotation: /organism="Homo sapiens" ignored annotation: /note="chromosome 12 or 19" ignored annotation: /db_xref="taxon:9606" ignored annotation: /germline ignored annotation: /dev_stage="adult" ignored annotation: /cell_type="lymphocyte" ignored annotation: /clone_lib="EMBL3A" ignored annotation: /clone="lambda-UA1" ignored annotation: repeat_unit 114..406 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 743..758 ignored annotation: /rpt_type=DIRECT ignored annotation: misc_binding 747..752 ignored annotation: /bound_moiety="Sp1" ignored annotation: repeat_unit 827..843 ignored annotation: /rpt_type=DIRECT ignored annotation: misc_binding 832..837 ignored annotation: /bound_moiety="Sp1" ignored annotation: repeat_unit 932..944 ignored annotation: /note="pyrimidine tract" ignored annotation: /rpt_type=INVERTED mRNA = 934..962,2363..2473,2733..2819,3942..4044,4129..4306 ignored annotation: /gene="UbA52" ignored annotation: /note="in placental gland cDNA clone" ignored annotation: prim_transcript 934..4312 ignored annotation: /gene="UbA52" mRNA join(934..962,2363..2473,2733..2819,3942..4044,4129..4312) ** orig/raws/HSUBA52G:51: more than one "mRNA" entry === HSUBR === locus = HSUBR ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="uterus" ignored annotation: exon <1155..1588 ignored annotation: /number=1 CDS = 1155..1588,1972..2323,2459..2872 ignored annotation: /codon_start=1 ignored annotation: /product="uterine bombesin receptor" ignored annotation: /db_xref="PID:g468754" ignored annotation: /db_xref="SWISS-PROT:P32247" translation = MAQRQPHSPNQTLISITNDTESSSSVVSNDNTNKGWSGDNSPGIEALCAIYITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLFGRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCVKAGCVWIVSMIFALPEAIFSNVYTFRDPNKNMTFESCTSYPVSKKLLQEIHSLLCFLVFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIARTVLVLVALFALCWLPNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKSFQKHFKAQLFCCKAERPEPPVADTSLTTLAVMGTVPGTGSIQMSEISVTSFTGCSVKQAEDRF ignored annotation: intron 1589..1971 ignored annotation: /number=1 ignored annotation: exon 1972..2323 ignored annotation: /number=2 ignored annotation: intron 2324..2458 ignored annotation: /number=2 ignored annotation: exon 2459..>2872 ignored annotation: /number=3 ignored annotation: BASE COUNT 944 a 666 c 700 g 1001 t 10 others 1621 atgtgaaatt gggcaaaaag aaaggaaagc ttnnnnntga attactctca gtcacacata ** orig/raws/HSUBR:78: invalid base letter "n" === HSUPA === locus = HSUPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 720..7188 ignored annotation: /gene="uPA" ignored annotation: CAAT_signal 720..722 ignored annotation: /gene="uPA" ignored annotation: repeat_region 739..744 ignored annotation: /note="repeat 1" ignored annotation: /rpt_type=DIRECT ignored annotation: repeat_region 754..759 ignored annotation: /note="repeat 1" ignored annotation: /rpt_type=DIRECT ignored annotation: repeat_region 765..770 ignored annotation: /note="repeat a" ignored annotation: /rpt_type=DIRECT ignored annotation: TATA_signal 775..781 ignored annotation: /gene="uPA" mRNA = 802..889,1196..1283,1701..1728,1875..1982,2586..2760,2954..3045,3203..3422,3644..3792,4458..4598,4945..5093,6083..7188 ignored annotation: /gene="uPA" ignored annotation: exon 802..889 ignored annotation: /gene="uPA" ignored annotation: /number=1 ignored annotation: intron 890..1195 ignored annotation: /gene="uPA" ignored annotation: /number=1 ignored annotation: exon 1196..1283 ignored annotation: /gene="uPA" ignored annotation: /number=2 CDS = 1227..1283,1701..1728,1875..1982,2586..2760,2954..3045,3203..3422,3644..3792,4458..4598,4945..5093,6083..6259 ignored annotation: /gene="uPA" ignored annotation: /EC_number="3.4.21.73" ignored annotation: /codon_start=1 ignored annotation: /product="urokinase-plasminogen activator" ignored annotation: /db_xref="PID:e300604" ignored annotation: /db_xref="PID:g1834524" translation = MRALLARLLLCVLVVSDSKGSNELHQVPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWCYVQVGLKPLVQECMVHDCADGKKPSSPPEELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEENGLAL ignored annotation: intron 1284..1700 ignored annotation: /gene="uPA" ignored annotation: /number=2 ignored annotation: exon 1701..1728 ignored annotation: /gene="uPA" ignored annotation: /number=3 ignored annotation: intron 1729..1874 ignored annotation: /gene="uPA" ignored annotation: /number=3 ignored annotation: exon 1875..1982 ignored annotation: /gene="uPA" ignored annotation: /number=4 ignored annotation: intron 1983..2585 ignored annotation: /gene="uPA" ignored annotation: /number=4 ignored annotation: exon 2586..2760 ignored annotation: /gene="uPA" ignored annotation: /number=5 ignored annotation: intron 2761..2953 ignored annotation: /gene="uPA" ignored annotation: /number=5 ignored annotation: exon 2954..3045 ignored annotation: /gene="uPA" ignored annotation: /number=6 ignored annotation: intron 3046..3202 ignored annotation: /gene="uPA" ignored annotation: /number=6 ignored annotation: exon 3203..3422 ignored annotation: /gene="uPA" ignored annotation: /number=7 ignored annotation: intron 3423..3643 ignored annotation: /gene="uPA" ignored annotation: /number=7 ignored annotation: exon 3644..3792 ignored annotation: /gene="uPA" ignored annotation: /number=8 ignored annotation: intron 3793..4457 ignored annotation: /gene="uPA" ignored annotation: /number=8 ignored annotation: exon 4458..4598 ignored annotation: /gene="uPA" ignored annotation: /number=9 ignored annotation: intron 4599..4944 ignored annotation: /gene="uPA" ignored annotation: /number=9 ignored annotation: exon 4945..5093 ignored annotation: /gene="uPA" ignored annotation: /number=10 ignored annotation: intron 5094..6082 ignored annotation: /gene="uPA" ignored annotation: /number=10 ignored annotation: exon 6083..7188 ignored annotation: /gene="uPA" ignored annotation: /number=11 ignored annotation: polyA_signal 7155..7160 ignored annotation: /gene="uPA" ignored annotation: polyA_signal 7168..7173 ignored annotation: /gene="uPA" ignored annotation: polyA_site 7188 ignored annotation: /gene="uPA" ignored annotation: BASE COUNT 1680 a 1858 c 2089 g 1631 t mRNA range 802..889 mRNA range 1196..1283 mRNA range 1701..1728 mRNA range 1875..1982 mRNA range 2586..2760 mRNA range 2954..3045 mRNA range 3203..3422 mRNA range 3644..3792 mRNA range 4458..4598 mRNA range 4945..5093 mRNA range 6083..7188 CDS range 1227..1283 CDS range 1701..1728 CDS range 1875..1982 CDS range 2586..2760 CDS range 2954..3045 CDS range 3203..3422 CDS range 3644..3792 CDS range 4458..4598 CDS range 4945..5093 CDS range 6083..6259 seq_ini = 1 seq_fin = 7258 i = 6259 last codon bas = tc[tga]ggg last codon lab = EF[DEF]YYY === HSUSF2 === locus = HSUSF2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="19" ignored annotation: /map="q13.1" ignored annotation: /clone_lib="LLNL 7058" ignored annotation: /dev_stage="adult" ignored annotation: /haplotype="2n" mRNA = 3688..3749,4031..4077,4166..4284,4388..4588,5032..5182,5303..5390,5668..5726,13284..13378,13532..13660,13753..14380 ignored annotation: /gene="USF2" ignored annotation: gene 3688..14380 ignored annotation: /gene="USF2" ignored annotation: exon 3688..3749 ignored annotation: /gene="USF2" ignored annotation: /number=1 CDS = 3688..3749,4031..4077,4166..4284,4388..4588,5032..5182,5303..5390,5668..5726,13284..13378,13532..13660,13753..13842 ignored annotation: /gene="USF2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e291919" ignored annotation: /db_xref="PID:g1806094" translation = MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ ignored annotation: intron 3750..4030 ignored annotation: /gene="USF2" ignored annotation: /number=1 ignored annotation: exon 4031..4077 ignored annotation: /gene="USF2" ignored annotation: /number=2 ignored annotation: intron 4078..4165 ignored annotation: /gene="USF2" ignored annotation: /number=2 ignored annotation: exon 4166..4284 ignored annotation: /gene="USF2" ignored annotation: /number=3 ignored annotation: intron 4285..4387 ignored annotation: /gene="USF2" ignored annotation: /number=3 ignored annotation: exon 4388..4588 ignored annotation: /gene="USF2" ignored annotation: /number=4 ignored annotation: intron 4589..5031 ignored annotation: /gene="USF2" ignored annotation: /number=4 ignored annotation: exon 5032..5182 ignored annotation: /gene="USF2" ignored annotation: /number=5 ignored annotation: intron 5183..5302 ignored annotation: /gene="USF2" ignored annotation: /number=5 ignored annotation: exon 5303..5390 ignored annotation: /gene="USF2" ignored annotation: /number=6 ignored annotation: intron 5391..5667 ignored annotation: /gene="USF2" ignored annotation: /number=6 ignored annotation: exon 5668..5726 ignored annotation: /gene="USF2" ignored annotation: /number=7 ignored annotation: intron 5727..13283 ignored annotation: /gene="USF2" ignored annotation: /number=7 ignored annotation: exon 13284..13378 ignored annotation: /gene="USF2" ignored annotation: /number=8 ignored annotation: intron 13379..13531 ignored annotation: /gene="USF2" ignored annotation: /number=8 ignored annotation: exon 13532..13660 ignored annotation: /gene="USF2" ignored annotation: /number=9 ignored annotation: intron 13661..13752 ignored annotation: /gene="USF2" ignored annotation: /number=9 ignored annotation: exon 13753..14380 ignored annotation: /gene="USF2" ignored annotation: /number=10 ignored annotation: BASE COUNT 2766 a 4210 c 4353 g 3110 t 1 others 3061 cgggccgcct ccccccagcg cgcgtccgcc ccsggctcgc gccgccgccg ccgccgccgc ** orig/raws/HSUSF2:164: invalid base letter "s" === HSV698D2 === locus = HSV698D2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="X" ignored annotation: /map="X" ignored annotation: /clone="V698D2" ignored annotation: repeat_region 32..326 ignored annotation: /note="Alu repeat: matches 1..306 of consensus" ignored annotation: repeat_region 772..1064 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 2236..2418 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..90 of consensus" ignored annotation: unsure 3390..3420 ignored annotation: repeat_region 4200..4241 ignored annotation: /note="7 copies of 6 mer 88 % conserved" ignored annotation: misc_feature 4823..6556 ignored annotation: /note="match: X66420 PLP gene promoter region" ignored annotation: unsure 5382..5434 ignored annotation: /note="single clone" CDS = 6557..6560,15144..15330,16027..16288,17360..17528,17999..18072,18895..18960,20088..20159 ignored annotation: /codon_start=1 ignored annotation: /product="PLP gene" ignored annotation: /db_xref="PID:e246993" ignored annotation: /db_xref="PID:g1370121" translation = MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF ignored annotation: repeat_region 7129..7164 ignored annotation: /note="18 copies of 2 mer 81 % conserved" ignored annotation: repeat_region 7630..7713 ignored annotation: /note="MIR element fragment" ignored annotation: repeat_region 9989..10038 ignored annotation: /note="25 copies of 2 mer 84 % conserved" ignored annotation: repeat_region 9989..10030 ignored annotation: /note="7 copies of 6 mer 88 % conserved" ignored annotation: unsure 12619..12807 ignored annotation: /note="single clone" ignored annotation: unsure 13102..13139 ignored annotation: /note="poor double stranding" ignored annotation: repeat_region 13496..13529 ignored annotation: /note="17 copies of 2 mer 88 % conserved" ignored annotation: repeat_region 13496..13531 ignored annotation: /note="6 copies of 6 mer 86 % conserved" ignored annotation: repeat_region 14645..14938 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: misc_feature 20086..22190 ignored annotation: /note="match: multiple ESTs" ignored annotation: misc_feature 20160..20560 ignored annotation: /note="match: STS G13642" ignored annotation: misc_feature 21264..21703 ignored annotation: /note="match: STS R66465" ignored annotation: repeat_region 25274..25371 ignored annotation: /note="2 copies of 49 mer 96 % conserved" ignored annotation: unsure 25691..25858 ignored annotation: /note="poor double stranding" ignored annotation: repeat_region 25763..26048 ignored annotation: /note="Alu repeat: matches 1..308 of consensus" ignored annotation: repeat_region 26395..26606 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 97..308 of consensus" ignored annotation: repeat_region 26666..26889 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..72 of consensus" ignored annotation: repeat_region 26890..26946 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 57..1 of consensus" ignored annotation: repeat_region 27099..27192 ignored annotation: /note="2 copies of 47 mer 89 % conserved" ignored annotation: unsure 27402..27409 ignored annotation: repeat_region 27542..27611 ignored annotation: /note="MER5A element fragment" ignored annotation: repeat_region 28221..28509 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 31746..31871 ignored annotation: /note="63 copies of 2 mer 83 % conserved" ignored annotation: repeat_region 31749..31868 ignored annotation: /note="20 copies of 6 mer 83 % conserved" ignored annotation: repeat_region 32327..33070 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 33158..33446 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 308..1 of consensus" ignored annotation: repeat_region 33456..34028 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 34125..34205 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 34323..34747 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 34866..35101 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 35226..35300 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 35416..35481 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 35524..35693 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 304..124 of consensus" ignored annotation: repeat_region 36058..36210 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 36325..36420 ignored annotation: /note="L1 element fragment" ignored annotation: repeat_region 37761..37883 ignored annotation: /note="MIR element fragment" ignored annotation: repeat_region 38572..38703 ignored annotation: /note="MLT1A element fragment" ignored annotation: repeat_region 38722..38753 ignored annotation: /note="16 copies of 2 mer 91 % conserved" ignored annotation: repeat_region 38724..38753 ignored annotation: /note="5 copies of 6 mer 93 % conserved" ignored annotation: repeat_region 38833..38880 ignored annotation: /note="MLT1A element fragment" ignored annotation: repeat_region 38883..39169 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 306..1 of consensus" ignored annotation: repeat_region 39368..39499 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 148..1 of consensus" ignored annotation: repeat_region 40759..40800 ignored annotation: /note="2 copies of 21 mer 100 % conserved" ignored annotation: repeat_region 41384..41566 ignored annotation: /note="MLT1A element fragment" ignored annotation: repeat_region 41588..41725 ignored annotation: /partial ignored annotation: /note="Alu repeat: matches 293..155 of consensus" ignored annotation: repeat_region 41733..41857 ignored annotation: /note="MLT1A element fragment" ignored annotation: BASE COUNT 11651 a 8770 c 8999 g 12585 t 8 others 20821 agggagcgtn agaatctgtg ntagacgaag ggggcatctg gccttacacc tcgttnaggg ** orig/raws/HSV698D2:506: invalid base letter "n" === HSY09781 === locus = HSY09781 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="4" ignored annotation: /map="4q12" ignored annotation: /clone="cos4" ignored annotation: repeat_region complement(644..940) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(3903..4199) ignored annotation: /rpt_family="MLT1d" ignored annotation: repeat_region complement(3910..4148) ignored annotation: /rpt_family="MLT1c" ignored annotation: repeat_region complement(3919..3971) ignored annotation: /rpt_family="MLT1b" ignored annotation: repeat_region complement(4198..4465) ignored annotation: /rpt_family="MLT1a" ignored annotation: repeat_region complement(4198..4329) ignored annotation: /rpt_family="MSTc" ignored annotation: repeat_region complement(4213..4373) ignored annotation: /rpt_family="MLT1b" ignored annotation: repeat_region 4653..4770 ignored annotation: /rpt_family="MLT1a" ignored annotation: repeat_region 4669..4770 ignored annotation: /rpt_family="MSTc" ignored annotation: repeat_region complement(4780..4860) ignored annotation: /rpt_family="MLT1a" ignored annotation: repeat_region complement(4871..4930) ignored annotation: /rpt_family="MLT1c" ignored annotation: gene 6952..34875 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: GC_signal 6952..6957 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: exon 7000..7032 ignored annotation: /gene="beta-sarcoglycan" CDS = 7000..7032,11602..11811,15358..15543,16300..16491,17121..17252,21053..21256 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: /note="43kDa dystrophin-associated glycoprotein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:e284885" ignored annotation: /db_xref="PID:g2769564" translation = MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQVTSQNMGCQISDNPCGNTH ignored annotation: repeat_region 8443..8527 ignored annotation: /rpt_family="MER45" ignored annotation: repeat_region complement(10636..10912) ignored annotation: /rpt_family="MER2" ignored annotation: gene 10829..28095 ignored annotation: /gene="unknown" ignored annotation: exon 10829..11035 ignored annotation: /gene="unknown" ignored annotation: /note="=potential internal exon" ignored annotation: repeat_region complement(10903..11204) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 10912..11166 ignored annotation: /rpt_family="SVA" ignored annotation: exon 11602..11811 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: /number=2 ignored annotation: exon 15358..15543 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: /number=3 ignored annotation: exon 16300..16491 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: /number=4 ignored annotation: repeat_region complement(16578..16856) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 16587..16838 ignored annotation: /rpt_family="SVA" ignored annotation: exon 17121..17252 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: /number=5 ignored annotation: repeat_region 18663..18950 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(18717..18941) ignored annotation: /rpt_family="SVA" ignored annotation: repeat_region 20068..20144 ignored annotation: /rpt_family="MIR2" ignored annotation: repeat_region complement(20379..20660) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 20439..20640 ignored annotation: /rpt_family="SVA" ignored annotation: exon 21053..21256 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: /number=6 ignored annotation: polyA_signal 21493..21498 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: repeat_region complement(21906..22089) ignored annotation: /rpt_family="MIR" ignored annotation: polyA_signal 22284..22289 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: repeat_region complement(23544..23848) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 23604..23810 ignored annotation: /rpt_family="SVA" ignored annotation: polyA_signal 24211..24216 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: polyA_signal 24488..24493 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: polyA_signal 25599..25604 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: repeat_region 26039..26308 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(26065..26296) ignored annotation: /rpt_family="SVA" ignored annotation: exon 27595..28095 ignored annotation: /gene="unknown" ignored annotation: /note="potential internal exon" ignored annotation: repeat_region complement(30955..31241) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 30971..31215 ignored annotation: /rpt_family="SVA" ignored annotation: polyA_signal 32383..32388 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: polyA_signal 32419..32424 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: polyA_signal 32468..32473 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: polyA_signal 32766..32771 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: repeat_region complement(33011..33290) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 33055..33284 ignored annotation: /rpt_family="SVA" ignored annotation: repeat_region complement(34154..34348) ignored annotation: /rpt_family="L1MD1" ignored annotation: repeat_region complement(34196..34348) ignored annotation: /rpt_family="L1MB7" ignored annotation: repeat_region complement(34206..34348) ignored annotation: /rpt_family="L1ME2" ignored annotation: repeat_region complement(34233..34348) ignored annotation: /rpt_family="L1ME3a" ignored annotation: repeat_region complement(34236..34348) ignored annotation: /rpt_family="L1MD2" ignored annotation: repeat_region complement(34246..34348) ignored annotation: /rpt_family="L1MC2" ignored annotation: repeat_region 34332..34605 ignored annotation: /rpt_family="L1MA10" ignored annotation: repeat_region 34382..34858 ignored annotation: /rpt_family="L1PA7" ignored annotation: repeat_region 34382..34879 ignored annotation: /rpt_family="L1PA15" ignored annotation: repeat_region 34382..34881 ignored annotation: /rpt_family="L1PA11" ignored annotation: repeat_region 34382..34605 ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 34382..34745 ignored annotation: /rpt_family="L1PA2" ignored annotation: repeat_region 34403..34605 ignored annotation: /rpt_family="L1MA2" ignored annotation: repeat_region 34407..34605 ignored annotation: /rpt_family="L1MD2" ignored annotation: polyA_signal 34411..34446 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: repeat_region 34427..34800 ignored annotation: /rpt_family="L1PB1" ignored annotation: repeat_region 34427..34875 ignored annotation: /rpt_family="L1PB3" ignored annotation: repeat_region 34438..34605 ignored annotation: /rpt_family="L1MA9" ignored annotation: polyA_signal 34870..34875 ignored annotation: /gene="beta-sarcoglycan" ignored annotation: repeat_region complement(34937..35022) ignored annotation: /rpt_family="L1MA9" ignored annotation: repeat_region complement(34937..35038) ignored annotation: /rpt_family="L1ME2" ignored annotation: repeat_region complement(34941..35038) ignored annotation: /rpt_family="L1MA10" ignored annotation: repeat_region complement(35102..35842) ignored annotation: /rpt_family="L1" ignored annotation: BASE COUNT 11013 a 6912 c 6930 g 11304 t // ** orig/raws/HSY09781:804: missing "mRNA" entry === HSZNGP1 === locus = HSZNGP1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /germline ignored annotation: /cell_line="blood leukocyte" ignored annotation: /clone_lib="EMBL 3" ignored annotation: /clone="ZN9, ZN2" ignored annotation: protein_bind 192..199 ignored annotation: /bound_moiety="AP2 transcription factor" ignored annotation: protein_bind 246..253 ignored annotation: /bound_moiety="Oct transcription factor" ignored annotation: gene 321..9464 ignored annotation: /gene="ZNGP1" ignored annotation: TATA_signal 321..325 ignored annotation: /gene="ZNGP1" ignored annotation: exon <442..517 ignored annotation: /gene="ZNGP1" ignored annotation: /number=1 mRNA = <442..517,4457..4717,8037..8312,9181..>9464 ignored annotation: /gene="ZNGP1" CDS = 442..517,4457..4717,8037..8312,9181..9464 ignored annotation: /gene="ZNGP1" ignored annotation: /codon_start=1 ignored annotation: /product="ZN-alpha-2-glycoprotein" ignored annotation: /db_xref="PID:g467671" translation = MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQGRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPWEAS ignored annotation: intron 518..4456 ignored annotation: /gene="ZNGP1" ignored annotation: /number=1 ignored annotation: misc_feature 1677..1825 ignored annotation: /gene="ZNGP1" ignored annotation: /note="MER-14 sequence" ignored annotation: repeat_unit complement(1855..2156) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: repeat_unit complement(2201..2471) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: repeat_unit complement(2537..2828) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: misc_feature 2839..2998 ignored annotation: /gene="ZNGP1" ignored annotation: /note="MER-12 sequence" ignored annotation: repeat_unit complement(3333..3627) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: repeat_unit complement(3638..3932) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: exon 4457..4717 ignored annotation: /gene="ZNGP1" ignored annotation: /number=2 ignored annotation: intron 4718..8036 ignored annotation: /gene="ZNGP1" ignored annotation: /number=2 ignored annotation: repeat_unit 5921..6228 ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: misc_feature 6332..6425 ignored annotation: /gene="ZNGP1" ignored annotation: /note="MIR sequence" ignored annotation: repeat_unit complement(6871..7038) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: repeat_unit complement(7039..7338) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: repeat_unit complement(7339..7473) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: repeat_unit complement(7475..7866) ignored annotation: /gene="ZNGP1" ignored annotation: /rpt_family="Alu sequence" ignored annotation: exon 8037..8312 ignored annotation: /gene="ZNGP1" ignored annotation: /number=3 ignored annotation: intron 8313..9180 ignored annotation: /gene="ZNGP1" ignored annotation: /number=3 ignored annotation: exon 9181..>9464 ignored annotation: /gene="ZNGP1" ignored annotation: /number=4 ignored annotation: polyA_signal 9709..9714 ignored annotation: BASE COUNT 2538 a 2341 c 2421 g 2523 t mRNA range 442..517 mRNA range 4457..4717 mRNA range 8037..8312 mRNA range 9181..9464 CDS range 442..517 CDS range 4457..4717 CDS range 8037..8312 CDS range 9181..9464 seq_ini = 1 seq_fin = 9823 i = 9464 last codon bas = gc[tag]gaa last codon lab = EF[DEF]NNN === HUM17BHSDI === locus = HUM17BHSDI ignored annotation: /organism="Homo sapiens" ignored annotation: /note="vector lambda EMBL3" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 1770..3323 ignored annotation: /gene="17BHSDI" ignored annotation: exon 1770..1875 ignored annotation: /gene="17BHSDI" ignored annotation: /number=1 CDS = 1779..1875,1969..2136,2283..2453,2621..2714,3209..3323 ignored annotation: /gene="17BHSDI" ignored annotation: /codon_start=1 ignored annotation: /product="17 beta-hydroxysteroid dehydrogenase" ignored annotation: /db_xref="PID:g1129087" translation = MACTVVLITGCSSGIGLHLAIHLALDPSQSFKVYATLRDLKTQGRLWEAARALACPQGSLERLQLDVRNSSSLAAARERVTEGRVDVLVCNTGLGLLGPLGEDAVASVLDVNVVGTVRVLQDFLPDMKRPGSGRVLVTGSMGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHVSLIECGPVDTAFMQKVLGGPDQVMDRTNTRTFRLLH ignored annotation: exon 1969..2136 ignored annotation: /gene="17BHSDI" ignored annotation: /number=2 ignored annotation: exon 2283..2453 ignored annotation: /gene="17BHSDI" ignored annotation: /number=3 ignored annotation: exon 2621..2714 ignored annotation: /gene="17BHSDI" ignored annotation: /number=4 ignored annotation: exon 3209..>3323 ignored annotation: /gene="17BHSDI" ignored annotation: /number=5 ignored annotation: BASE COUNT 890 a 1216 c 1215 g 873 t // ** orig/raws/HUM17BHSDI:127: missing "mRNA" entry === HUM6PTS === locus = HUM6PTS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /tissue_type="blood" ignored annotation: exon <1..320 ignored annotation: /number=1 ignored annotation: 5'UTR <1..6 CDS = 7..320,519..642 ignored annotation: /codon_start=1 ignored annotation: /product="6-pyruvoyl-tetrahydropterin synthase" ignored annotation: /db_xref="PID:d1005497" ignored annotation: /db_xref="PID:g624869" translation = MSTEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQKVLPVGVLYKVKVYETDNNIVVYKGE ignored annotation: intron 321..518 ignored annotation: exon 519..718 ignored annotation: /number=2 ignored annotation: 3'UTR 643..>718 ignored annotation: BASE COUNT 209 a 107 c 163 g 239 t // ** orig/raws/HUM6PTS:66: missing "mRNA" entry === HUMA1ATP === locus = HUMA1ATP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 1952..2001 ignored annotation: /gene="A1A" ignored annotation: /number=1 ignored annotation: gene 1952..12101 ignored annotation: /gene="A1A" ignored annotation: intron 2002..7311 ignored annotation: /gene="A1A" ignored annotation: /note="A1A mRNA intron A" ignored annotation: exon 7312..7961 ignored annotation: /gene="A1A" ignored annotation: /number=2 CDS = 7316..7961,9412..9682,10939..11086,11910..12101 ignored annotation: /gene="A1A" ignored annotation: /codon_start=1 ignored annotation: /product="alpha-1-antitrypsin" ignored annotation: /db_xref="PID:g177831" translation = MPSSVSWGILLLAGLCCLVPVSLAEDPQGDAAQKTDTSHHDQDHPTFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLVNELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK ignored annotation: sig_peptide 7316..7387 ignored annotation: /gene="A1A" ignored annotation: mat_peptide join(7388..7961,9412..9682,10939..11086,11910..12098) ignored annotation: /gene="A1A" ignored annotation: /product="alpha-1-antitrypsin" ignored annotation: intron 7962..9411 ignored annotation: /gene="A1A" ignored annotation: /number=2 ignored annotation: variation 7971 ignored annotation: /gene="A1A" ignored annotation: /note="c in one cDNA clone; t in another cDNA clone" ignored annotation: /replace="t" ignored annotation: exon 9412..9682 ignored annotation: /gene="A1A" ignored annotation: /number=3 ignored annotation: allele 9628 ignored annotation: /gene="A1A" ignored annotation: /note="a in cDNA clone; t in S variant genomic clone" ignored annotation: /replace="t" ignored annotation: intron 9683..10938 ignored annotation: /gene="A1A" ignored annotation: /number=3 ignored annotation: exon 10939..11086 ignored annotation: /gene="A1A" ignored annotation: /number=4 ignored annotation: intron 11087..11909 ignored annotation: /gene="A1A" ignored annotation: /number=4 ignored annotation: exon 11910..>12101 ignored annotation: /gene="A1A" ignored annotation: /number=5 ignored annotation: variation 11999 ignored annotation: /gene="A1A" ignored annotation: /note="c in one cDNA clone; g in another cDNA clone" ignored annotation: /replace="g" ignored annotation: BASE COUNT 2984 a 3125 c 3155 g 2958 t // ** orig/raws/HUMA1ATP:286: missing "mRNA" entry === HUMA1GLY2 === locus = HUMA1GLY2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="9q32" ignored annotation: prim_transcript 1594..>4940 ignored annotation: /note="AGP2 mRNA and introns" ignored annotation: exon <1609..1722 ignored annotation: /gene="ORM2" ignored annotation: /note="alpha-1-acid glycoprotein 2; G00-120-251" ignored annotation: gene 1609..1722 ignored annotation: /gene="ORM2" CDS = 1609..1722,2138..2280,2499..2569,3274..3381,3532..3635,4776..4841 ignored annotation: /note="alpha-1-acid glycoprotein 2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g177840" translation = MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLREYQTRQNQCFYNSSYLNVQRENGTVSRYEGGREHVAHLLFLRDTKTLMFGSYLDDEKNWGLSFYADKPETTKEQLGEFYEALDCLCIPRSDVMYTDWKKDKCEPLEKQHEKERKQEEGES ignored annotation: intron 1723..2137 ignored annotation: /note="AGP2 intron A" ignored annotation: exon 2138..2280 ignored annotation: /number=2 ignored annotation: intron 2281..2498 ignored annotation: /note="AGP2 intron B" ignored annotation: exon 2499..2569 ignored annotation: /number=3 ignored annotation: intron 2570..3273 ignored annotation: /note="AGP2 intron C" ignored annotation: exon 3274..3381 ignored annotation: /number=4 ignored annotation: intron 3382..3531 ignored annotation: /note="AGP2 intron D" ignored annotation: exon 3532..3635 ignored annotation: /number=5 ignored annotation: intron 3636..4775 ignored annotation: /note="AGP2 intron E" ignored annotation: exon 4776..>4841 ignored annotation: /note="alpha-1-acid glycoprotein 2" ignored annotation: /number=6 ignored annotation: BASE COUNT 1206 a 1369 c 1292 g 1077 t // ** orig/raws/HUMA1GLY2:143: missing "mRNA" entry === HUMACCYBB === locus = HUMACCYBB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="7pter-q22" ignored annotation: prim_transcript <319..3589 ignored annotation: /note="actin mRNA" ignored annotation: intron 320..1086 ignored annotation: /note="actin intron A" ignored annotation: exon <1093..1215 ignored annotation: /gene="ACTB" ignored annotation: /note="cytoplasmic beta actin, (first expressed exon); ignored annotation: G00-118-964" ignored annotation: /number=2 ignored annotation: gene 1093..1215 ignored annotation: /gene="ACTB" CDS = 1093..1215,1348..1587,2029..2467,2563..2744,2857..3000 ignored annotation: /note="cytoplasmic beta actin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g177968" translation = MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF ignored annotation: intron 1216..1347 ignored annotation: /note="actin intron B" ignored annotation: exon 1348..1587 ignored annotation: /number=3 ignored annotation: intron 1588..2028 ignored annotation: /note="actin intron C" ignored annotation: exon 2029..2467 ignored annotation: /number=4 ignored annotation: intron 2468..2562 ignored annotation: /note="actin intron D" ignored annotation: exon 2563..2744 ignored annotation: /number=5 ignored annotation: intron 2745..2856 ignored annotation: /note="actin intron E" ignored annotation: exon 2857..>3000 ignored annotation: /note="cytoplasmic beta actin" ignored annotation: /number=6 ignored annotation: BASE COUNT 613 a 1117 c 1102 g 814 t // ** orig/raws/HUMACCYBB:133: missing "mRNA" entry === HUMADAG === locus = HUMADAG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="20q13.2-qter; 475 bp upstream of HindIII site" ignored annotation: /chromosome="20" ignored annotation: LTR 1025..1357 ignored annotation: /note="THE O family LTR" ignored annotation: repeat_region 1362..1672 ignored annotation: /note="Alu repeat" ignored annotation: LTR 1680..1717 ignored annotation: /note="THE O family LTR" ignored annotation: repeat_region 2357..2903 ignored annotation: /note="Alu repeat" ignored annotation: mutation 2455..5706 ignored annotation: /note="g-3250 bp-c in [1]; gc in [2] -> immune deficiency ignored annotation: dysfunction" ignored annotation: prim_transcript 3936..35975 ignored annotation: /note="ADA mRNA" ignored annotation: gene 4031..35664 ignored annotation: /gene="ADA" CDS = 4031..4063,19230..19291,26344..26466,28908..29051,29823..29938,31176..31303,32425..32496,32573..32674,32851..32915,34354..34483,35100..35202,35651..35664 ignored annotation: /gene="ADA" ignored annotation: /codon_start=1 ignored annotation: /product="adenosine deaminase" ignored annotation: /db_xref="PID:g178077" translation = MAQTPAFDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPDFLAKFDYYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKVVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGYHTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELLDLLYKAYGMPPSASAGQNL ignored annotation: exon <4031..4063 ignored annotation: /gene="ADA" ignored annotation: /note="adenosine deaminase" ignored annotation: /number=1 ignored annotation: mutation 4052 ignored annotation: /gene="ADA" ignored annotation: /note="The functional significance of this substitution at ignored annotation: cDNA position 117 (AA 8 Asp->Asn) is unknown as it occurs ignored annotation: in the same allele as a 5 bp deletion in exon 10 which is ignored annotation: associated with very low ADA mRN" ignored annotation: /citation=[3] ignored annotation: intron 4064..19229 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 1" ignored annotation: repeat_region 4907..5227 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 5606..5908 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 7582..8001 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 8179..8484 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 10005..10204 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 10257..10534 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 13452..13777 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 14837..15386 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 15806..16106 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 16913..17224 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 18414..18717 ignored annotation: /note="Alu repeat" ignored annotation: exon 19230..19291 ignored annotation: /gene="ADA" ignored annotation: /number=2 ignored annotation: intron 19292..26343 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 2" ignored annotation: repeat_region 19605..19902 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 22523..22829 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 24481..24773 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 25143..25453 ignored annotation: /note="Alu repeat" ignored annotation: exon 26344..26466 ignored annotation: /gene="ADA" ignored annotation: /number=3 ignored annotation: intron 26467..28907 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 3" ignored annotation: repeat_region 26949..27269 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 28032..28333 ignored annotation: /note="Alu repeat" ignored annotation: exon 28908..29051 ignored annotation: /gene="ADA" ignored annotation: /number=4 ignored annotation: intron 29052..29822 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 4" ignored annotation: exon 29823..29938 ignored annotation: /gene="ADA" ignored annotation: /number=5 ignored annotation: intron 29939..31175 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 5" ignored annotation: exon 31176..31303 ignored annotation: /gene="ADA" ignored annotation: /number=6 ignored annotation: intron 31304..32424 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 6" ignored annotation: repeat_region 31460..31867 ignored annotation: /note="Alu repeat" ignored annotation: exon 32425..32496 ignored annotation: /gene="ADA" ignored annotation: /number=7 ignored annotation: intron 32497..32572 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 7" ignored annotation: exon 32573..32674 ignored annotation: /gene="ADA" ignored annotation: /number=8 ignored annotation: intron 32675..32850 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 8" ignored annotation: exon 32851..32915 ignored annotation: /gene="ADA" ignored annotation: /number=9 ignored annotation: intron 32916..34353 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 9" ignored annotation: exon 34354..34483 ignored annotation: /gene="ADA" ignored annotation: /number=10 ignored annotation: mutation 34462..34468 ignored annotation: /gene="ADA" ignored annotation: /note="This mutation is found in both alleles of a patient ignored annotation: with severe combined immunodeficiency secondary to ADA ignored annotation: deficiency. The deletion creates a premature stop codon ignored annotation: resulting in very low levels of ADA m" ignored annotation: /citation=[3] ignored annotation: intron 34484..35099 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 10" ignored annotation: exon 35100..35202 ignored annotation: /gene="ADA" ignored annotation: /number=11 ignored annotation: intron 35203..35650 ignored annotation: /gene="ADA" ignored annotation: /note="ADA intron 11" ignored annotation: exon 35651..>35664 ignored annotation: /gene="ADA" ignored annotation: /note="adenosine deaminase" ignored annotation: /number=12 ignored annotation: BASE COUNT 8165 a 9716 c 9721 g 9139 t // ** orig/raws/HUMADAG:807: missing "mRNA" entry === HUMADPRF02 === locus = HUMADPRF02 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = M74492:1319..1536,118..358,1197..1307,1525..1649,2193..5092 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /product="ADP-ribosylation factor 3" ignored annotation: gene join(M74492:1319..1624,1..5092) ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: intron order(M74492:1537..1624,1..117) ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=1 ignored annotation: exon 118..358 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=2 CDS = 211..358,1197..1307,1525..1649,2193..2354 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /codon_start=1 ignored annotation: /product="ADP-ribosylation factor 3" ignored annotation: /db_xref="PID:g178160" translation = MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK ignored annotation: intron 359..1196 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=2 ignored annotation: exon 1197..1307 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=3 ignored annotation: intron 1308..1524 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=3 ignored annotation: exon 1525..1649 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=4 ignored annotation: intron 1650..2192 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=4 ignored annotation: exon 2193..5092 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: /number=5 ignored annotation: polyA_signal 2588..2593 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: polyA_signal 5073..5078 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: polyA_site 5092 ignored annotation: /gene="ADP-ribosylation factor 3" ignored annotation: BASE COUNT 1019 a 1308 c 1310 g 1530 t // ** orig/raws/HUMADPRF02:156: bad range format "M74492:1319..1536" === HUMAFP === locus = HUMAFP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="charon 4a library of T. Maniatis" ignored annotation: /map="4q11-22" ignored annotation: /tissue_type="liver" ignored annotation: /dev_stage="fetus" ignored annotation: repeat_unit 2609..2701 ignored annotation: /citation=[1] ignored annotation: /rpt_type=direct ignored annotation: /evidence=experimental ignored annotation: /rpt_family="x" ignored annotation: repeat_unit 2835..2930 ignored annotation: /citation=[1] ignored annotation: /rpt_type=direct ignored annotation: /evidence=experimental ignored annotation: /rpt_family="x" ignored annotation: CAAT_signal 3072..3076 ignored annotation: TATA_signal 3114..3119 ignored annotation: /note="putative" ignored annotation: /citation=[1] ignored annotation: /evidence=experimental ignored annotation: prim_transcript 3141..22629 mRNA = 3141..3269,4082..4133,5096..5228,7516..7727,9214..9346,10265..10362,11911..12040,14316..14530,16188..16320,16889..16986,17469..17607,19255..19478,20619..20751,22090..22144,22485..22629 ignored annotation: 5'UTR 3141..3184 ignored annotation: exon 3141..3269 CDS = 3185..3269,4082..4133,5096..5228,7516..7727,9214..9346,10265..10362,11911..12040,14316..14530,16188..16320,16889..16986,17469..17607,19255..19478,20619..20751,22090..22134 ignored annotation: /citation=[1] ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="alpha-fetoprotein" ignored annotation: /db_xref="PID:g178236" translation = MKWVESIFLIFLLNFTESRTLHRNEYGIASILDSYQCTAEISLADLATIFFAQFVQEATYKEVSKMVKDALTAIEKPTGDEQSSGCLENQLPAFLEELCHEKEILEKYGHSDCCSQSEEGRHNCFLAHKKPTPASIPLFQVPEPVTSCEAYEEDRETFMNKFIYEIARRHPFLYAPTILLWAARYDKIIPSCCKAENAVECFQTKAATVTKELRESSLLNQHACAVMKNFGTRTFQAITVTKLSQKFTKVNFTEIQKLVLDVAHVHEHCCRGDVLDCLQDGEKIMSYICSQQDTLSNKITECCKLTTLERGQCIIHAENDEKPEGLSPNLNRFLGDRDFNQFSSGEKNIFLASFVHEYSRRHPQLAVSVILRVAKGYQELLEKCFQTENPLECQDKGEEELQKYIQESQALAKRSCGLFQKLGEYYLQNAFLVAYTKKAPQLTSSELMAITRKMAATAATCCQLSEDKLLACGEGAADIIIGHLCIRHEMTPVNPGVGQCCTSSYANRRPCFSSLVVDETYVPPAFSDDKFIFHKDLCQAQGVALQTMKQEFLINLVKQKPQITEEQLEAVIADFSGLLEKCCQGQEQEVCFAEEGQKLISKTRAALGV ignored annotation: sig_peptide 3185..3241 ignored annotation: mat_peptide join(3242..3269,4082..4133,5096..5228,7516..7727, ignored annotation: 9214..9346,10265..10362,11911..12040,14316..14530, ignored annotation: 16188..16320,16889..16986,17469..17607,19255..19478, ignored annotation: 20619..20751,22090..22131) ignored annotation: /note="alpha-fetoprotein" ignored annotation: /evidence=experimental ignored annotation: intron 3270..4081 ignored annotation: exon 4082..4133 ignored annotation: intron 4134..5095 ignored annotation: exon 5096..5228 ignored annotation: intron 5229..7515 ignored annotation: repeat_unit complement(6956..7181) ignored annotation: /citation=[1] ignored annotation: /rpt_type=inverted ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Kpn" ignored annotation: exon 7516..7727 ignored annotation: intron 7728..9213 ignored annotation: repeat_region 8188..8198 ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 8199..8502 ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: allele 8402..8403 ignored annotation: /citation=[1] ignored annotation: /replace="aaa" ignored annotation: repeat_region 8503..8513 ignored annotation: /citation=[1] ignored annotation: /rpt_family="Alu" ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: allele 8691..8693 ignored annotation: /citation=[1] ignored annotation: /replace="tc" ignored annotation: allele 8722..8724 ignored annotation: /citation=[1] ignored annotation: /replace="at" ignored annotation: allele 8922 ignored annotation: /citation=[1] ignored annotation: /replace="g" ignored annotation: exon 9214..9346 ignored annotation: intron 9347..10264 ignored annotation: allele 9691..9695 ignored annotation: /citation=[1] ignored annotation: /replace="ac" ignored annotation: exon 10265..10362 ignored annotation: intron 10363..11910 ignored annotation: allele 10673 ignored annotation: /citation=[1] ignored annotation: /replace="g" ignored annotation: exon 11911..12040 ignored annotation: intron 12041..14315 ignored annotation: allele 12634 ignored annotation: /citation=[1] ignored annotation: /replace="g" ignored annotation: repeat_region 13818..14120 ignored annotation: /citation=[1] ignored annotation: /rpt_type=direct ignored annotation: /evidence=experimental ignored annotation: /rpt_family="xba" ignored annotation: exon 14316..14530 ignored annotation: intron 14531..16187 ignored annotation: repeat_region 15092..15394 ignored annotation: /citation=[1] ignored annotation: /rpt_type=direct ignored annotation: /evidence=experimental ignored annotation: /rpt_family="xba" ignored annotation: exon 16188..16320 ignored annotation: intron 16321..16888 ignored annotation: exon 16889..16986 ignored annotation: intron 16987..17468 ignored annotation: exon 17469..17607 ignored annotation: intron 17608..19254 ignored annotation: exon 19255..19478 ignored annotation: intron 19479..20618 ignored annotation: exon 20619..20751 ignored annotation: intron 20752..22089 ignored annotation: exon 22090..22144 ignored annotation: terminator 22132 ignored annotation: 3'UTR join(22132..22144,22485..22629) ignored annotation: intron 22145..22484 ignored annotation: exon 22485..22629 ignored annotation: polyA_signal 22629 ignored annotation: repeat_region complement(23761..23771) ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(23772..23901) ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(23902..23912) ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(24201..24219) ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(24220..24527) ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(24528..24545) ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 26397..26409 ignored annotation: /citation=[1] ignored annotation: /rpt_type=dispersed ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region complement(26409..26481) ignored annotation: /citation=[1] ignored annotation: /rpt_type=inverted ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region 26482..26735 ignored annotation: /citation=[1] ignored annotation: /rpt_type=direct ignored annotation: /evidence=experimental ignored annotation: /rpt_family="Kpn" ignored annotation: repeat_region 26736..26748 ignored annotation: /citation=[1] ignored annotation: /rpt_family="Kpn" ignored annotation: /rpt_type=direct ignored annotation: BASE COUNT 8819 a 4656 c 4994 g 9084 t mRNA range 3141..3269 mRNA range 4082..4133 mRNA range 5096..5228 mRNA range 7516..7727 mRNA range 9214..9346 mRNA range 10265..10362 mRNA range 11911..12040 mRNA range 14316..14530 mRNA range 16188..16320 mRNA range 16889..16986 mRNA range 17469..17607 mRNA range 19255..19478 mRNA range 20619..20751 mRNA range 22090..22144 mRNA range 22485..22629 CDS range 3185..3269 CDS range 4082..4133 CDS range 5096..5228 CDS range 7516..7727 CDS range 9214..9346 CDS range 10265..10362 CDS range 11911..12040 CDS range 14316..14530 CDS range 16188..16320 CDS range 16889..16986 CDS range 17469..17607 CDS range 19255..19478 CDS range 20619..20751 CDS range 22090..22134 seq_ini = 1 seq_fin = 27553 i = 22134 last codon bas = tt[taa]att last codon lab = EF[DEF]YYY === HUMAGAL === locus = HUMAGAL ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphoblast" ignored annotation: /dev_stage="adult" ignored annotation: /map="22q13-qter" ignored annotation: /chromosome="22" mRNA = 1321..1805,3530..3665,4167..4338,4815..4992,5297..5391,6192..6353,9038..9235,10990..11133,11635..13663 ignored annotation: /gene="NAGA" ignored annotation: /note="G00-119-445" ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 1321..1805 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=1 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: gene 1321..13663 ignored annotation: /gene="NAGA" CDS = 1790..1805,3530..3665,4167..4338,4815..4992,5297..5391,6192..6353,9038..9235,10990..11133,11636..11770 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /codon_start=1 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: /db_xref="PID:g1513067" ignored annotation: /db_xref="GDB:G00-119-445" translation = MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNFTGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYLYPIKNLEMSQQ ignored annotation: exon 3530..3665 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=2 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 4167..4338 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=3 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 4815..4992 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=4 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 5297..5391 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=5 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 6192..6353 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=6 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 9038..9235 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=7 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 10990..11133 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=8 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: exon 11636..13663 ignored annotation: /gene="NAGA" ignored annotation: /EC_number="3.2.1.49" ignored annotation: /note="G00-119-445" ignored annotation: /number=9 ignored annotation: /product="alpha-N-acetylgalactosaminidase" ignored annotation: BASE COUNT 2924 a 3618 c 3630 g 3491 t mRNA range 1321..1805 mRNA range 3530..3665 mRNA range 4167..4338 mRNA range 4815..4992 mRNA range 5297..5391 mRNA range 6192..6353 mRNA range 9038..9235 mRNA range 10990..11133 mRNA range 11635..13663 CDS range 1790..1805 CDS range 3530..3665 CDS range 4167..4338 CDS range 4815..4992 CDS range 5297..5391 CDS range 6192..6353 CDS range 9038..9235 CDS range 10990..11133 CDS range 11636..11770 seq_ini = 1 seq_fin = 13663 i = 11770 last codon bas = ag[tga]gga last codon lab = EF[DEF]YYY === HUMAK1 === locus = HUMAK1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_lib="of T.Maniatis" ignored annotation: /map="9q34.1" ignored annotation: TATA_signal 902..908 ignored annotation: exon 944..983 ignored annotation: /partial ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=1 mRNA = 944..983,3948..3988,5534..5569,5742..5905,6656..6772,10075..10266,10508..12188 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /product="adenylate kinase" ignored annotation: gene join(944..983,3948..3988,5534..5569,5742..5905,6656..6772, ignored annotation: 10075..10266,10508..12188) ignored annotation: /gene="AK1" ignored annotation: intron 984..3947 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664; does not fit consensus" ignored annotation: /number=1 ignored annotation: exon 3948..3988 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=2 CDS = 3982..3988,5534..5569,5742..5905,6656..6772,10075..10266,10508..10576 ignored annotation: /gene="AK1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-664" ignored annotation: /product="adenylate kinase" ignored annotation: /db_xref="PID:g178322" translation = MEEKLKKTKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALK ignored annotation: intron 3989..5533 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=2 ignored annotation: exon 5534..5569 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=3 ignored annotation: intron 5570..5741 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=3 ignored annotation: exon 5742..5905 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=4 ignored annotation: intron 5906..6655 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=4 ignored annotation: exon 6656..6772 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=5 ignored annotation: intron 6773..10074 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=5 ignored annotation: exon 10075..10266 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=6 ignored annotation: intron 10267..10507 ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=6 ignored annotation: exon 10508..12188 ignored annotation: /partial ignored annotation: /gene="AK1" ignored annotation: /note="G00-119-664" ignored annotation: /number=7 ignored annotation: BASE COUNT 2417 a 3457 c 3877 g 2478 t mRNA range 944..983 mRNA range 3948..3988 mRNA range 5534..5569 mRNA range 5742..5905 mRNA range 6656..6772 mRNA range 10075..10266 mRNA range 10508..12188 CDS range 3982..3988 CDS range 5534..5569 CDS range 5742..5905 CDS range 6656..6772 CDS range 10075..10266 CDS range 10508..10576 seq_ini = 1 seq_fin = 12229 i = 10576 last codon bas = ag[tag]caa last codon lab = EF[DEF]YYY === HUMALIFA === locus = HUMALIFA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="22q11.2-q13.1" mRNA = 657..739,2471..2649,3343..6826 ignored annotation: /gene="LIF" ignored annotation: /note="G00-120-152" ignored annotation: exon 657..739 ignored annotation: /gene="LIF" ignored annotation: /note="G00-120-152" ignored annotation: /number=1 ignored annotation: gene join(657..739,2471..2649,3343..6826) ignored annotation: /gene="LIF" CDS = 721..739,2471..2649,3343..3753 ignored annotation: /gene="LIF" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-152" ignored annotation: /product="leukemia inhibitory factor" ignored annotation: /db_xref="PID:g178415" translation = MKVLAAGVVPLLLVLHWKHGAGSPLPITPVNATCAIRHPCHNNLMNQIRSQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQKKKLGCQLLGKYKQIIAVLAQAF ignored annotation: sig_peptide join(721..739,2471..2490) ignored annotation: /gene="LIF" ignored annotation: /note="G00-120-152" ignored annotation: exon 2471..2649 ignored annotation: /gene="LIF" ignored annotation: /note="G00-120-152" ignored annotation: /number=2 ignored annotation: mat_peptide join(2491..2649,3343..3750) ignored annotation: /gene="LIF" ignored annotation: /note="G00-120-152" ignored annotation: /product="leukemia inhibitory factor" ignored annotation: exon 3343..6826 ignored annotation: /gene="LIF" ignored annotation: /note="G00-120-152" ignored annotation: /number=3 ignored annotation: BASE COUNT 1512 a 2159 c 2297 g 1646 t mRNA range 657..739 mRNA range 2471..2649 mRNA range 3343..6826 CDS range 721..739 CDS range 2471..2649 CDS range 3343..3753 seq_ini = 1 seq_fin = 7614 i = 3753 last codon bas = tc[tag]cag last codon lab = EF[DEF]YYY === HUMANFA === locus = HUMANFA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="1p36" ignored annotation: prim_transcript 473..2537 ignored annotation: /note="PND mRNA [1],[2]" ignored annotation: gene join(570..692,815..1141,2235..2240) ignored annotation: /gene="PND" CDS = 570..692,815..1141,2235..2240 ignored annotation: /gene="PND" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-118-727" ignored annotation: /product="natriodilatin" ignored annotation: /db_xref="PID:g178630" translation = MSSFSTTTVSFLLLLAFQLLGQTRANPMYNAVSNADLMDFKNLLDHLEEKMPLEDEVVPPQVLSEPNEEAGAALSPLPEVPPWTGEVSPAQRDGGALGRGPWDSSDRSALLKSKLRALLTAPRSLRRSSCFGGRMDRIGAQSGLGCNSFRY ignored annotation: exon <570..692 ignored annotation: /gene="PND" ignored annotation: /note="prepronatriodilatin; G00-118-727" ignored annotation: /number=1 ignored annotation: sig_peptide 570..644 ignored annotation: /gene="PND" ignored annotation: /note="prepronatriodilatin signal peptide" ignored annotation: intron 693..814 ignored annotation: /gene="PND" ignored annotation: /note="G00-118-727" ignored annotation: /number=1 ignored annotation: exon 815..1141 ignored annotation: /gene="PND" ignored annotation: /note="G00-118-727" ignored annotation: /number=2 ignored annotation: conflict 886 ignored annotation: /gene="PND" ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: mat_peptide join(1061..1141,2235..2237) ignored annotation: /gene="PND" ignored annotation: /note="G00-118-727" ignored annotation: /product="atrial natriuretic peptide" ignored annotation: intron 1142..2234 ignored annotation: /gene="PND" ignored annotation: /note="G00-118-727" ignored annotation: /number=2 ignored annotation: conflict 1331..1334 ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: conflict 1349..1356 ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: conflict 2106 ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: conflict 2111 ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: conflict 2119 ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: conflict 2131 ignored annotation: /citation=[4] ignored annotation: /replace="" ignored annotation: BASE COUNT 667 a 665 c 768 g 610 t // ** orig/raws/HUMANFA:170: missing "mRNA" entry === HUMANT1 === locus = HUMANT1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="4" ignored annotation: CAAT_signal 1413..1417 ignored annotation: TATA_signal 1473..1477 ignored annotation: prim_transcript 1498..5492 ignored annotation: /note="ANT1 mRNA and introns" ignored annotation: gene join(1607..1717,2985..3471,3980..4120,5035..5192) ignored annotation: /gene="ANT1" CDS = 1607..1717,2985..3471,3980..4120,5035..5192 ignored annotation: /gene="ANT1" ignored annotation: /note="ATP/ADP translocator" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-680" ignored annotation: /db_xref="PID:g178659" translation = MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV ignored annotation: exon <1607..1717 ignored annotation: /gene="ANT1" ignored annotation: /note="ATP/ADP translocator" ignored annotation: /number=1 ignored annotation: intron 1718..2984 ignored annotation: /note="ANT1 intron A" ignored annotation: exon 2985..3471 ignored annotation: /gene="ANT1" ignored annotation: /number=2 ignored annotation: intron 3472..3979 ignored annotation: /note="ANT1 intron B" ignored annotation: exon 3980..4120 ignored annotation: /gene="ANT1" ignored annotation: /number=3 ignored annotation: intron 4121..5034 ignored annotation: /note="ANT1 intron C" ignored annotation: exon 5035..>5192 ignored annotation: /gene="ANT1" ignored annotation: /note="ATP/ADP translocator" ignored annotation: /number=4 ignored annotation: BASE COUNT 1481 a 1377 c 1404 g 1506 t // ** orig/raws/HUMANT1:162: missing "mRNA" entry === HUMANT2X === locus = HUMANT2X ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="Xq13-q26" ignored annotation: CAAT_signal 1128..1132 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: CAAT_signal 1455..1459 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: CAAT_signal 1817..1821 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: TATA_signal 1907..1910 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" mRNA = 1936..2114,3124..3610,3835..3975,4350..4767 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /product="adenine nucleotide translocator-2" ignored annotation: gene join(1936..2114,3124..3610,3835..3975,4350..4767) ignored annotation: /gene="ANT2" ignored annotation: exon 1936..2114 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=1 CDS = 2004..2114,3124..3610,3835..3975,4350..4507 ignored annotation: /gene="ANT2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-125-190" ignored annotation: /product="adenine nucleotide translocator-2" ignored annotation: /db_xref="PID:g178661" translation = MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHIVISWMIAQTVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYT ignored annotation: intron 2115..3123 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=1 ignored annotation: exon 3124..3610 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=2 ignored annotation: intron 3611..3834 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=2 ignored annotation: exon 3835..3975 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=3 ignored annotation: intron 3976..4349 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=3 ignored annotation: exon 4350..4767 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: /number=4 ignored annotation: polyA_signal 4750..4755 ignored annotation: /gene="ANT2" ignored annotation: /note="G00-125-190" ignored annotation: BASE COUNT 1211 a 1226 c 1265 g 1280 t mRNA range 1936..2114 mRNA range 3124..3610 mRNA range 3835..3975 mRNA range 4350..4767 CDS range 2004..2114 CDS range 3124..3610 CDS range 3835..3975 CDS range 4350..4507 seq_ini = 1 seq_fin = 4982 i = 4507 last codon bas = ca[taa]gtt last codon lab = EF[DEF]YYY === HUMAPOA4A === locus = HUMAPOA4A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="pHAIVG[5.1,5.2]" ignored annotation: /clone_lib="C.Lau" ignored annotation: prim_transcript 893..3495 ignored annotation: /note="APO mRNA and introns" ignored annotation: primer_bind complement(986..1005) CDS = 1006..1054,1412..1538,2316..3330 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g178757" ignored annotation: /db_xref="GDB:G00-119-000" translation = MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFATELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRTKLGPHAGDVEGHLSFLEKDLRDKVNSFFSTFKEKESQDKTLSLPELEQQQEQHQEQQQEQVQMLAPLES ignored annotation: sig_peptide join(1006..1054,1412..1422) ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV signal peptide" ignored annotation: gene 1006..3330 ignored annotation: /gene="APOA4" ignored annotation: /map="11q23-qter" ignored annotation: sig_peptide 1006..1054 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV signal peptide" ignored annotation: exon <1006..1054 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV precursor; G00-119-000" ignored annotation: /number=1 ignored annotation: intron 1055..1411 ignored annotation: /gene="APOA4" ignored annotation: /note="APO intron A" ignored annotation: STS order(complement(986..1005),1412..1431) ignored annotation: /citation=[2] ignored annotation: exon 1412..1538 ignored annotation: /gene="APOA4" ignored annotation: /number=2 ignored annotation: sig_peptide 1412..1422 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV signal peptide" ignored annotation: primer_bind 1412..1431 ignored annotation: /gene="APOA4" ignored annotation: mat_peptide 1423..1538 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV" ignored annotation: mat_peptide join(1423..1538,2316..3327) ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV" ignored annotation: intron 1539..2315 ignored annotation: /gene="APOA4" ignored annotation: /note="APO intron B" ignored annotation: mat_peptide 2316..3327 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV" ignored annotation: exon 2316..>3330 ignored annotation: /gene="APOA4" ignored annotation: /note="apolipoprotein A-IV precursor" ignored annotation: /number=3 ignored annotation: BASE COUNT 867 a 965 c 1082 g 699 t // ** orig/raws/HUMAPOA4A:152: missing "mRNA" entry === HUMAPOC2 === locus = HUMAPOC2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="CII." ignored annotation: /cell_line="LE392" ignored annotation: /tissue_lib="T.Maniatis" ignored annotation: /map="19q13.2" ignored annotation: /chromosome="19" ignored annotation: exon 511..551 ignored annotation: /gene="APOC2" ignored annotation: /number=1 ignored annotation: gene 511..3862 ignored annotation: /gene="APOC2" ignored annotation: exon 523..551 ignored annotation: /gene="APOC2" ignored annotation: /number=1 ignored annotation: intron 552..2937 ignored annotation: /gene="APOC2" ignored annotation: /number=1 ignored annotation: repeat_region 749..822 ignored annotation: /note="Alu repeat copy A" ignored annotation: repeat_region 904..982 ignored annotation: /note="Alu repeat copy B" ignored annotation: repeat_region 988..1657 ignored annotation: /note="Alu repeat copy C" ignored annotation: repeat_region 2117..2749 ignored annotation: /note="Alu repeat copy D" ignored annotation: exon 2938..3005 ignored annotation: /gene="APOC2" ignored annotation: /number=2 CDS = 2951..3005,3173..3332,3629..3668 ignored annotation: /gene="APOC2" ignored annotation: /codon_start=1 ignored annotation: /product="apolipoprotein CII" ignored annotation: /db_xref="PID:g178825" translation = MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTFLTQVKESLSSYWESAKTAAQNLYEKTYLPAVDEKLRDLYSKSTAAMST ignored annotation: sig_peptide join(2951..3005,3173..3183) ignored annotation: /gene="APOC2" ignored annotation: intron 3006..3172 ignored annotation: /gene="APOC2" ignored annotation: /number=2 ignored annotation: exon 3173..3332 ignored annotation: /gene="APOC2" ignored annotation: /number=3 ignored annotation: mat_peptide join(3184..3332,3629..3665) ignored annotation: /gene="APOC2" ignored annotation: /product="apolipoprotein CII" ignored annotation: intron 3333..3628 ignored annotation: /gene="APOC2" ignored annotation: /number=3 ignored annotation: exon 3629..3862 ignored annotation: /gene="APOC2" ignored annotation: /number=4 ignored annotation: BASE COUNT 1036 a 1091 c 1085 g 845 t // ** orig/raws/HUMAPOC2:152: missing "mRNA" entry === HUMAPOCIA === locus = HUMAPOCIA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="19q13.2" ignored annotation: TATA_signal 466..472 ignored annotation: prim_transcript 493..5145 ignored annotation: /note="apoC-I mRNA and introns" ignored annotation: intron 526..663 ignored annotation: /note="apoC-I intron A" ignored annotation: gene 684..741 ignored annotation: /gene="APOC1" CDS = 684..741,1986..2121,4976..5033 ignored annotation: /note="apolipoprotein C-I" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g178831" translation = MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSELSAKMREWFSETFQKVKEKLKIDS ignored annotation: exon <684..741 ignored annotation: /gene="APOC1" ignored annotation: /note="apolipoprotein C-I , first expressed exon; ignored annotation: G00-119-687" ignored annotation: /number=2 ignored annotation: intron 742..1985 ignored annotation: /note="apoC-I intron B" ignored annotation: repeat_region 1095..1403 ignored annotation: /note="Alu repeat copy A" ignored annotation: repeat_region 1095..1109 ignored annotation: /note="Alu copy A 5' direct repeat" ignored annotation: repeat_region 1391..1403 ignored annotation: /note="Alu copy A 3' direct repeat" ignored annotation: repeat_region 1467..1477 ignored annotation: /note="Alu copy B 5' direct repeat" ignored annotation: repeat_region 1467..1960 ignored annotation: /note="Alu repeat copy B" ignored annotation: repeat_region 1951..1960 ignored annotation: /note="Alu copy B 3' direct repeat" ignored annotation: exon 1986..2121 ignored annotation: /number=3 ignored annotation: intron 2122..4975 ignored annotation: /note="apoC-I intron C" ignored annotation: repeat_region 2320..2647 ignored annotation: /note="Alu repeat copy C" ignored annotation: repeat_region 2320..2331 ignored annotation: /note="Alu copy C 5' direct repeat" ignored annotation: repeat_region 2636..2794 ignored annotation: /note="Alu repeat copy D (partial)" ignored annotation: repeat_region 2636..2647 ignored annotation: /note="Alu copy D 5' direct repeat" ignored annotation: repeat_region 2636..2647 ignored annotation: /note="Alu copy C 3' direct repeat" ignored annotation: repeat_region 2783..2794 ignored annotation: /note="Alu copy D 3' direct repeat" ignored annotation: repeat_region 3100..3402 ignored annotation: /note="Alu repeat copy E" ignored annotation: repeat_region 3100..3108 ignored annotation: /note="Alu copy E 5' direct repeat" ignored annotation: repeat_region 3394..3402 ignored annotation: /note="Alu copy E 3' direct repeat" ignored annotation: repeat_region 3494..3793 ignored annotation: /note="Alu repeat copy F" ignored annotation: repeat_region 3798..4081 ignored annotation: /note="Alu repeat copy G" ignored annotation: repeat_region 4126..4776 ignored annotation: /note="Alu repeat copy H" ignored annotation: repeat_region 4126..4140 ignored annotation: /note="Alu copy H 5' direct repeat" ignored annotation: repeat_region 4762..4776 ignored annotation: /note="Alu copy H 3' direct repeat" ignored annotation: exon 4976..>5033 ignored annotation: /note="apolipoprotein C-I" ignored annotation: /number=4 ignored annotation: polyA_signal 5130..5135 ignored annotation: BASE COUNT 1363 a 1342 c 1509 g 1161 t // ** orig/raws/HUMAPOCIA:182: missing "mRNA" entry === HUMAPOE4 === locus = HUMAPOE4 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="19q13.2" ignored annotation: conflict 202..203 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: repeat_region complement(300..345) ignored annotation: /note="direct repeat flanking Alu repeat 3' copy [1]" ignored annotation: repeat_region complement(346..635) ignored annotation: /note="Alu repeat [1]" ignored annotation: repeat_region complement(636..680) ignored annotation: /note="direct repeat flanking Alu repeat 5' copy [1]" ignored annotation: conflict 963..967 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: exon 1047..1090 ignored annotation: /note="apo E mRNA [2],[1]" ignored annotation: /number=1 ignored annotation: intron 1091..1847 ignored annotation: /note="apo E mRNA intron 1 [2],[1]" ignored annotation: conflict 1362..1363 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: conflict 1789..1793 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: sig_peptide join(1871..1913,3007..3017) ignored annotation: exon 1871..1913 ignored annotation: /partial ignored annotation: /gene="APOE" ignored annotation: /note="preapolipoprotein E; G00-119-691" ignored annotation: /number=2 ignored annotation: gene 1871..1913 ignored annotation: /gene="APOE" CDS = 1871..1913,3007..3199,3781..4498 ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="apolipoprotein E" ignored annotation: /db_xref="PID:g178853" translation = MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLKSWFEPLVEDMQRQWAGLVEKVQAAVGTSAAPVPSDNH ignored annotation: intron 1914..3006 ignored annotation: /note="apo E cds intron 2 [2],[1]" ignored annotation: repeat_region complement(2092..2104) ignored annotation: /note="direct repeat flanking Alu repeat 3' copy [1]" ignored annotation: repeat_region complement(2105..2429) ignored annotation: /note="Alu repeat [1]" ignored annotation: repeat_region complement(2430..2442) ignored annotation: /note="direct repeat flanking Alu repeat 5' copy [1]" ignored annotation: repeat_region 2520..2526 ignored annotation: /note="direct repeat flanking Alu repeat 5' copy [1]" ignored annotation: repeat_region 2527..2886 ignored annotation: /note="Alu repeat [1]" ignored annotation: conflict 2568..2569 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: repeat_region 2887..2893 ignored annotation: /note="direct repeat flanking Alu repeat 3' copy [1]" ignored annotation: conflict 2947..2948 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: conflict 2983..2984 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: exon 3007..3199 ignored annotation: /number=2 ignored annotation: mat_peptide join(3018..3199,3781..4495) ignored annotation: /product="apolipoprotein E" ignored annotation: allele 3182 ignored annotation: /note="g in epsilon-4; a in epsilon-3 [2]" ignored annotation: allele 3191 ignored annotation: /note="g in epsilon-4; a in epsilon-3 [2]" ignored annotation: intron 3200..3780 ignored annotation: /note="apo E cds intron 3 [2],[1]" ignored annotation: conflict 3568..3569 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: exon 3781..4640 ignored annotation: /partial ignored annotation: /note="preapolipoprotein E" ignored annotation: /number=3 ignored annotation: allele 3817..3819 ignored annotation: /note="cta in [2] and 1 allele [3]; agc in other allele ignored annotation: [3]" ignored annotation: allele 3844..3846 ignored annotation: /note="gac in [2] and 1 allele [3]; tgt in other allele ignored annotation: [3]" ignored annotation: allele 3932 ignored annotation: /note="c in epsilon-4; t in epsilon-3 [2] (arg; cys)" ignored annotation: allele 4342 ignored annotation: /note="g in epsilon-4; a in epsilon-3 [2]" ignored annotation: conflict 4708..4709 ignored annotation: /citation=[2] ignored annotation: /replace="" ignored annotation: repeat_region complement(4761..4768) ignored annotation: /note="direct repeat flanking Alu repeat 3' copy [1]" ignored annotation: repeat_region complement(4769..5048) ignored annotation: /note="Alu repeat [1]" ignored annotation: repeat_region complement(5049..5056) ignored annotation: /note="direct repeat flanking Alu repeat 5' copy [1]" ignored annotation: BASE COUNT 1042 a 1667 c 1600 g 1206 t // ** orig/raws/HUMAPOE4:252: missing "mRNA" entry === HUMATP1A2 === locus = HUMATP1A2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leucocyte" ignored annotation: /map="1q21-q23" mRNA = 1577..1692,6713..6817,6999..7058,9020..9223,9750..9863,10103..10237,10943..11060,12480..12748,13580..13778,13908..14017,14194..14328,15030..15219,15350..15525,19411..19547,20072..20222,20361..20529,20766..20920,21174..21297,21497..21642,21828..21958,22647..22748,22900..22991,24296..26668 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /product="Na,K-ATPase subunit alpha 2" ignored annotation: exon 1577..1692 ignored annotation: /partial ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=1 ignored annotation: gene join(1577..1692,6713..6817,6999..7058,9020..9223, ignored annotation: 9750..9863,10103..10237,10943..11060,12480..12748, ignored annotation: 13580..13778,13908..14017,14194..14328,15030..15219, ignored annotation: 15350..15525,19411..19547,20072..20222,20361..20529, ignored annotation: 20766..20920,21174..21297,21497..21642,21828..21958, ignored annotation: 22647..22748,22900..22991,24296..26668) ignored annotation: /gene="ATP1A2" CDS = 1681..1692,6713..6817,6999..7058,9020..9223,9750..9863,10103..10237,10943..11060,12480..12748,13580..13778,13908..14017,14194..14328,15030..15219,15350..15525,19411..19547,20072..20222,20361..20529,20766..20920,21174..21297,21497..21642,21828..21958,22647..22748,22900..22991,24296..24324 ignored annotation: /gene="ATP1A2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-712" ignored annotation: /product="Na,K-ATPase subunit alpha 2" ignored annotation: /db_xref="PID:g179165" translation = MGRGAGREYSPAATTAENGGGKKKQKEKELDELKKEVAMDDHKLSLDELGRKYQVDLSKGLTNQRAQDVLARDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILCFLAYGIQAAMEDEPSNDNLYLGVVLAAVVIVTGCFSYYQEAKSSKIMDSFKNMVPQQALVIREGEKMQINAEEVVVGDLVEVKGGDRVPADLRIISSHGCKVDNSSLTGESEPQTRSPEFTHENPLETRNICFFSTNCVEGTARGIVIATGDRTVMGRIATLASGLEVGRTPIAMEIEHFIQLITGVAVFLGVSFFVLSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGSVRKMRDRNPKVAEIPFNSTNKYQLSIHEREDSPQSHVLVMKGAPERILDRCSTILVQGKEIPLDKEMQDAFQNAYMELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPMSQVNPREAKACVVHGSDLKDMTSEQLDEILKNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPSRLLGIRLDWDDRTMNDLEDSYGQEWTYEQRKVVEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPGMGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWVEKETYY ignored annotation: intron 1693..6712 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=1 ignored annotation: repeat_region 5542..5845 ignored annotation: /rpt_family="Alu repeat" ignored annotation: exon 6713..6817 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=2 ignored annotation: intron 6818..6998 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=2 ignored annotation: exon 6999..7058 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=3 ignored annotation: intron 7059..9019 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=3 ignored annotation: repeat_region 7657..7939 ignored annotation: /rpt_family="Alu repeat" ignored annotation: exon 9020..9223 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=4 ignored annotation: intron 9224..9749 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=4 ignored annotation: exon 9750..9863 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=5 ignored annotation: intron 9864..10102 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=5 ignored annotation: exon 10103..10237 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=6 ignored annotation: intron 10238..10942 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=6 ignored annotation: exon 10943..11060 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=7 ignored annotation: intron 11061..12479 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=7 ignored annotation: exon 12480..12748 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=8 ignored annotation: intron 12749..13579 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=8 ignored annotation: exon 13580..13778 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=9 ignored annotation: intron 13779..13907 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=9 ignored annotation: exon 13908..14017 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=10 ignored annotation: intron 14018..14193 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=10 ignored annotation: exon 14194..14328 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=11 ignored annotation: intron 14329..15029 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=11 ignored annotation: exon 15030..15219 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=12 ignored annotation: intron 15220..15349 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=12 ignored annotation: exon 15350..15525 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=13 ignored annotation: intron 15526..19410 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=13 ignored annotation: repeat_region 16470..16773 ignored annotation: /rpt_family="Alu repeat" ignored annotation: exon 19411..19547 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=14 ignored annotation: intron 19548..20071 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=14 ignored annotation: exon 20072..20222 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=15 ignored annotation: intron 20223..20360 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=15 ignored annotation: exon 20361..20529 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=16 ignored annotation: intron 20530..20765 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=16 ignored annotation: exon 20766..20920 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=17 ignored annotation: intron 20921..21173 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=17 ignored annotation: exon 21174..21297 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=18 ignored annotation: intron 21298..21496 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=18 ignored annotation: exon 21497..21642 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=19 ignored annotation: intron 21643..21827 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=19 ignored annotation: exon 21828..21958 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=20 ignored annotation: intron 21959..22646 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=20 ignored annotation: exon 22647..22748 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=21 ignored annotation: intron 22749..22899 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=21 ignored annotation: exon 22900..22991 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=22 ignored annotation: intron 22992..24295 ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=22 ignored annotation: repeat_region 23845..24165 ignored annotation: /rpt_family="Alu repeat" ignored annotation: exon 24296..26668 ignored annotation: /partial ignored annotation: /gene="ATP1A2" ignored annotation: /note="G00-119-712" ignored annotation: /number=23 ignored annotation: repeat_region 25527..25820 ignored annotation: /note="ALU repeat" ignored annotation: BASE COUNT 6489 a 7135 c 6574 g 6468 t 2 others 4321 acctgagaaa ggcagaggca gaaccactca caagcctttc cccacccctt ccattgggnn ** orig/raws/HUMATP1A2:336: invalid base letter "n" === HUMATPGG === locus = HUMATPGG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="liver" ignored annotation: /tissue_lib="of K.Motojima" ignored annotation: protein_bind 58..65 ignored annotation: /bound_moiety="AP2" ignored annotation: protein_bind 64..73 ignored annotation: /bound_moiety="STM1" ignored annotation: repeat_region 136..152 ignored annotation: /note="D1 copy 1" ignored annotation: /rpt_family="direct" ignored annotation: repeat_region 218..234 ignored annotation: /note="D1 copy 2" ignored annotation: /rpt_type=direct ignored annotation: protein_bind 350..354 ignored annotation: /bound_moiety="NF-Y" ignored annotation: repeat_region 375..388 ignored annotation: /note="D2 copy 1" ignored annotation: /rpt_type=direct ignored annotation: repeat_region 388..407 ignored annotation: /note="D2 copy 2" ignored annotation: /rpt_type=direct ignored annotation: repeat_region 394..416 ignored annotation: /note="palindrome p1" ignored annotation: protein_bind 440..445 ignored annotation: /bound_moiety="STM4" ignored annotation: repeat_region 607..888 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 690..709 ignored annotation: /note="palindrome p2" ignored annotation: repeat_region 866..880 ignored annotation: /note="palindrome p3" ignored annotation: protein_bind 1042..1048 ignored annotation: /bound_moiety="AP1" ignored annotation: repeat_region 1060..1076 ignored annotation: /note="D2 copy 3" ignored annotation: /rpt_type=direct ignored annotation: protein_bind 1105..1109 ignored annotation: /bound_moiety="NF-Y" ignored annotation: TATA_signal 1115..1121 ignored annotation: misc_binding 1138..1142 ignored annotation: /bound_moiety="cAMP" ignored annotation: CAAT_signal 1144..1149 ignored annotation: repeat_region 1213..1226 ignored annotation: /note="palindrome p4" ignored annotation: protein_bind 1328..1336 ignored annotation: /bound_moiety="AP4" ignored annotation: protein_bind 1339..1344 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 1360..1365 ignored annotation: /bound_moiety="SP1" ignored annotation: TATA_signal 1374..1380 ignored annotation: exon <1433..1444 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=1 CDS = 1433..1444,1535..1678,1794..1853,2425..2628,4131..4244,4448..4700,4990..5258,5871..6069,6376..6485,6566..6700,7215..7407,7974..8149,9251..9387,9473..9623,9729..9897,9987..10141,11233..11356,11880..12025,13481..13614,13950..14051,14136..14227,14418..14446 ignored annotation: /codon_start=1 ignored annotation: /product="H+,K+-ATPase" ignored annotation: /db_xref="PID:g561634" translation = MGKAENYELYSVELGPGPGGDMAAKMSKKKKAGGGGGKRKEKLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLAIALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILAAQGCKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHTADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRDRFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHLLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLNEKDYPPGYAFDVEAMNFPSSGLCFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRAQWEDHHLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEVCQIADVLIRKTRRLSAFQQGFFRNKILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPLPYGILIFVYDEIRKLGVRCCPGSWWDQELYY ignored annotation: intron 1445..1534 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=1 ignored annotation: exon 1535..1678 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=2 ignored annotation: intron 1679..1793 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=2 ignored annotation: exon 1794..1853 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=3 ignored annotation: intron 1854..2424 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=3 ignored annotation: exon 2425..2628 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=4 ignored annotation: intron 2629..4130 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=4 ignored annotation: repeat_region 2908..3189 ignored annotation: /rpt_family="Alu" ignored annotation: exon 4131..4244 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=5 ignored annotation: intron 4245..4447 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=5 ignored annotation: exon 4448..4700 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=6 ignored annotation: intron 4701..4989 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=6 ignored annotation: exon 4990..5258 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=7 ignored annotation: intron 5259..5870 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=7 ignored annotation: exon 5871..6069 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=8 ignored annotation: intron 6070..6375 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=8 ignored annotation: exon 6376..6485 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=9 ignored annotation: intron 6486..6565 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=9 ignored annotation: exon 6566..6700 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=10 ignored annotation: intron 6701..7214 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=10 ignored annotation: exon 7215..7407 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=11 ignored annotation: intron 7408..7973 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=11 ignored annotation: exon 7974..8149 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=12 ignored annotation: intron 8150..9250 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=12 ignored annotation: exon 9251..9387 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=13 ignored annotation: intron 9388..9472 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=13 ignored annotation: exon 9473..9623 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=14 ignored annotation: intron 9624..9728 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=14 ignored annotation: exon 9729..9897 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=15 ignored annotation: intron 9898..9986 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=15 ignored annotation: exon 9987..10141 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=16 ignored annotation: intron 10142..11232 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=16 ignored annotation: exon 11233..11356 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: intron 11357..11879 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=17 ignored annotation: exon 11880..12025 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=18 ignored annotation: intron 12026..13480 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=18 ignored annotation: repeat_region 12797..12996 ignored annotation: /rpt_family="Alu" ignored annotation: exon 13481..13614 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=19 ignored annotation: intron 13615..13949 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=19 ignored annotation: exon 13950..14051 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=20 ignored annotation: intron 14052..14135 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=20 ignored annotation: exon 14136..14227 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: intron 14228..14417 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=21 ignored annotation: exon 14418..>14446 ignored annotation: /note="(H+ + K+)-ATPase" ignored annotation: /number=22 ignored annotation: protein_bind 14640..14649 ignored annotation: /bound_moiety="STM1" ignored annotation: repeat_region 14771..14783 ignored annotation: /note="palindrome p5" ignored annotation: polyA_signal 14835..14840 ignored annotation: polyA_signal 14998..15003 ignored annotation: BASE COUNT 3289 a 4381 c 4310 g 3087 t // ** orig/raws/HUMATPGG:489: missing "mRNA" entry === HUMATPSAS === locus = HUMATPSAS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: repeat_unit complement(551..856) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit complement(1341..1678) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 1921..2206 ignored annotation: /rpt_family="Alu" ignored annotation: misc_signal 2257..2268 ignored annotation: /note="putative factor/enhancer sequence: Z-DNA" ignored annotation: CAAT_signal 2399..2403 ignored annotation: misc_signal 2423..2430 ignored annotation: /note="CS1" ignored annotation: misc_signal 2425..2430 ignored annotation: /note="putative factor/enhancer sequence: PU BOX" ignored annotation: CAAT_signal complement(2489..2494) ignored annotation: misc_signal 2607..2614 ignored annotation: /note="putative factor/enhancer sequence: SV40 enhancer ignored annotation: core" ignored annotation: misc_signal 2680..2687 ignored annotation: /note="putative factor/enhancer sequence: AP-2" ignored annotation: misc_signal 2790..2798 ignored annotation: /note="putative factor/enhancer sequenec: GFII/MLTF" ignored annotation: misc_signal 2807..2815 ignored annotation: /note="putative factor/enhancer sequence: Mt4-like ignored annotation: sequence" ignored annotation: misc_signal 2823..2830 ignored annotation: /note="CS2: nuclear factor-binding site" ignored annotation: misc_signal 2852..2862 ignored annotation: /note="putative factor/enhancer sequence: OX BOX-like ignored annotation: sequence" ignored annotation: misc_signal 2863..2871 ignored annotation: /note="putative factor/enhancer sequence: Sp1" ignored annotation: misc_signal 3055..3062 ignored annotation: /note="putative factor enhancer sequence: AP-2" ignored annotation: misc_signal 3090..3097 ignored annotation: /note="putative factor/enhancer sequence: GFII-like ignored annotation: sequence" ignored annotation: misc_signal 3101..3107 ignored annotation: /note="putative factor/enhancer sequence: GCF" ignored annotation: misc_signal 3109..3119 ignored annotation: /note="putative factor/enhancer sequence: NRF-2-like ignored annotation: sequence" ignored annotation: misc_signal 3152..3159 ignored annotation: /note="putative factor/enhancer sequence: Mt3-like ignored annotation: sequence" ignored annotation: misc_signal 3165..3172 ignored annotation: /note="putative factor/enhancer sequence: Mt1-like ignored annotation: sequence" ignored annotation: misc_feature 3252..3269 ignored annotation: /note="G+C rich region" ignored annotation: misc_signal 3283..3290 ignored annotation: /note="putative factor/enhancer sequence: AP-2" ignored annotation: misc_signal 3295..3302 ignored annotation: /note="putative factor/enhancer sequence: EST-1" ignored annotation: misc_signal 3303..3311 ignored annotation: /note="putative factor/enhancer sequence: GFII" ignored annotation: misc_signal 3310..3316 ignored annotation: /note="putative factor/enhancer sequence: GCF" ignored annotation: misc_signal 3342..3349 ignored annotation: /note="initiator" ignored annotation: 5'UTR 3355..3408 ignored annotation: exon 3355..3468 ignored annotation: /number=1 ignored annotation: misc_signal 3367..3374 ignored annotation: /note="CS3: nuclear factor-binding site" ignored annotation: misc_signal 3388..3395 ignored annotation: /note="putative factor/enhancer sequence: AP-2" CDS = 3409..3468,6478..6556,9759..9928,11614..11787,11878..12044,13352..13500,14117..14268,14377..14601,15115..15222,15352..15496,16954..17104,17245..17326 ignored annotation: /standard_name="F1-ATPase alpha subunit" ignored annotation: /codon_start=1 ignored annotation: /evidence=experimental ignored annotation: /product="ATP synthase alpha subunit" ignored annotation: /db_xref="PID:d1006217" ignored annotation: /db_xref="PID:g559317" translation = MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGFEA ignored annotation: transit_peptide join(3409..3468,6478..6546) ignored annotation: misc_signal 3503..3510 ignored annotation: /note="putative factor/enhancer sequence: AP-2" ignored annotation: misc_signal 3526..3533 ignored annotation: /note="putative factor/enhancer sequence: GCF" ignored annotation: misc_signal 3555..3562 ignored annotation: /note="putative factor/enhancer sequence: AP-2" ignored annotation: misc_signal 3637..3642 ignored annotation: /note="putative factor/enhancer sequence: CRE" ignored annotation: misc_signal 3730..3735 ignored annotation: /note="putative factor/enhancer sequence: GCF" ignored annotation: misc_signal 3765..3772 ignored annotation: /note="putative factor/enhancer sequence: AP-2" ignored annotation: misc_signal 3809..3814 ignored annotation: /note="putative factor/enhancer sequence: PU BOX" ignored annotation: misc_signal 3952..3957 ignored annotation: /note="putative factor/enhancer sequence: PU BOX" ignored annotation: misc_signal 4168..4173 ignored annotation: /note="putative factor/enhancer sequence: AP-3" ignored annotation: misc_signal 4180..4188 ignored annotation: /note="putative factor/enhancer sequence: C/EBP(AP-1)" ignored annotation: repeat_unit complement(4632..4926) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit complement(5118..5406) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 5488..5816 ignored annotation: exon 6478..6556 ignored annotation: /number=2 ignored annotation: repeat_unit complement(6907..7211) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit complement(7491..7807) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit complement(8448..8746) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit complement(9383..9708) ignored annotation: /rpt_family="Alu" ignored annotation: exon 9759..9928 ignored annotation: /number=3 ignored annotation: exon 11614..11787 ignored annotation: /number=4 ignored annotation: exon 11878..12044 ignored annotation: /number=5 ignored annotation: exon 13352..13500 ignored annotation: /number=6 ignored annotation: repeat_unit complement(13715..14010) ignored annotation: /rpt_family="Alu" ignored annotation: exon 14117..14268 ignored annotation: /number=7 ignored annotation: exon 14377..14601 ignored annotation: /number=8 ignored annotation: exon 15115..15222 ignored annotation: /number=9 ignored annotation: exon 15352..15496 ignored annotation: /number=10 ignored annotation: repeat_unit complement(15642..15975) ignored annotation: /rpt_family="Alu" ignored annotation: exon 16954..17104 ignored annotation: /number=11 ignored annotation: exon 17245..17458 ignored annotation: /number=12 ignored annotation: polyA_signal 17440..17445 ignored annotation: polyA_site 17458 ignored annotation: repeat_unit complement(17602..17901) ignored annotation: /rpt_family="Alu" ignored annotation: BASE COUNT 4525 a 3795 c 4072 g 5612 t // ** orig/raws/HUMATPSAS:482: missing "mRNA" entry === HUMATPSYB === locus = HUMATPSYB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="12p13-qter" ignored annotation: prim_transcript 2099..9908 ignored annotation: /note="ATPSB mRNA and introns" ignored annotation: gene 2120..2246 ignored annotation: /gene="ATPSB" CDS = 2120..2246,2728..2910,3126..3300,4123..4244,4494..4678,5250..5408,5501..5623,7888..8100,8775..8976,9663..9763 ignored annotation: /note="ATP synthase beta subunit precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g179281" translation = MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHSS ignored annotation: exon <2120..2246 ignored annotation: /gene="ATPSB" ignored annotation: /note="ATP synthase beta subunit precursor, (EC ignored annotation: 3.6.1.34); G00-119-718" ignored annotation: /number=1 ignored annotation: sig_peptide join(2120..2246,2728..2747) ignored annotation: /note="ATP synthase beta subunit signal peptide" ignored annotation: intron 2247..2727 ignored annotation: /note="ATPSB intron A" ignored annotation: exon 2728..2910 ignored annotation: /number=2 ignored annotation: mat_peptide join(2748..2910,3126..3300,4123..4244,4494..4678, ignored annotation: 5250..5408,5501..5623,9662..9760) ignored annotation: /note="ATP synthase beta subunit" ignored annotation: intron 2911..3125 ignored annotation: /note="ATPSB intron B" ignored annotation: exon 3126..3300 ignored annotation: /number=3 ignored annotation: intron 3301..4122 ignored annotation: /note="ATPSB intron C" ignored annotation: exon 4123..4244 ignored annotation: /number=4 ignored annotation: intron 4245..4493 ignored annotation: /note="ATPSB intron D" ignored annotation: exon 4494..4678 ignored annotation: /number=5 ignored annotation: intron 4679..5249 ignored annotation: /note="ATPSB intron E" ignored annotation: exon 5250..5408 ignored annotation: /number=6 ignored annotation: intron 5409..5500 ignored annotation: /note="ATPSB intron F" ignored annotation: exon 5501..5623 ignored annotation: /number=7 ignored annotation: intron 5624..7887 ignored annotation: /note="ATPSB intron G" ignored annotation: exon 7888..8100 ignored annotation: /number=8 ignored annotation: intron 8101..8774 ignored annotation: /note="ATPSB intron H" ignored annotation: exon 8775..8976 ignored annotation: /number=9 ignored annotation: intron 8977..9662 ignored annotation: /note="ATPSB intron I" ignored annotation: exon 9663..>9763 ignored annotation: /note="ATP synthase beta subunit precursor" ignored annotation: /number=10 ignored annotation: BASE COUNT 2468 a 2289 c 2375 g 3054 t // ** orig/raws/HUMATPSYB:264: missing "mRNA" entry === HUMAZCDI === locus = HUMAZCDI ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /germline ignored annotation: GC_signal complement(28..33) ignored annotation: CAAT_signal 137..142 ignored annotation: GC_signal 179..184 ignored annotation: TATA_signal 212..216 mRNA = (237.241)..310,636..792,2002..2146,3148..3381,4156..>4458 ignored annotation: /standard_name="azurocidin mRNA" ignored annotation: exon (237.241)..310 ignored annotation: /number=1 ignored annotation: /label=exon1 ignored annotation: CAAT_signal 237..242 ignored annotation: conflict 250 ignored annotation: /note="'C' in conflict" ignored annotation: /citation=[1] ignored annotation: /replace="" CDS = 253..310,636..792,2002..2146,3148..3381,4156..4317 ignored annotation: /codon_start=1 ignored annotation: /product="azurocidin" ignored annotation: /db_xref="PID:g179302" translation = MTRLTVLALLAGLLASSRAGSSPLLDIVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGDGGTPLVCEGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNNPGPGPA ignored annotation: sig_peptide join(253..310,636..655) ignored annotation: conflict 297 ignored annotation: /note="'G' in conflict" ignored annotation: /citation=[1] ignored annotation: /replace="" ignored annotation: intron 311..635 ignored annotation: /number=1 ignored annotation: exon 636..792 ignored annotation: /number=2 ignored annotation: /label=exon2 ignored annotation: mat_peptide join(656..792,2002..2146,3148..3381,4156..4314) ignored annotation: /product="azurocidin" ignored annotation: intron 793..2001 ignored annotation: /number=2 ignored annotation: exon 2002..2146 ignored annotation: /number=3 ignored annotation: /label=exon3 ignored annotation: intron 2147..3147 ignored annotation: /number=3 ignored annotation: repeat_region complement(2246..2369) ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 2417..2703 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region complement(2895..3014) ignored annotation: /rpt_family="'Alu'" ignored annotation: exon 3148..3381 ignored annotation: /number=4 ignored annotation: /label=exon4 ignored annotation: intron 3382..4155 ignored annotation: /number=4 ignored annotation: repeat_region complement(3525..3810) ignored annotation: /rpt_family="'Alu'" ignored annotation: exon 4156..>4458 ignored annotation: /number=5 ignored annotation: /label=exon5 ignored annotation: conflict 4380 ignored annotation: /note="'' in conflict" ignored annotation: /citation=[1] ignored annotation: /replace="" ignored annotation: repeat_region 4661..4951 ignored annotation: /rpt_family="'Alu'" ignored annotation: BASE COUNT 1089 a 1268 c 1771 g 874 t // ** orig/raws/HUMAZCDI:182: bad range format "(237.241)..310" === HUMBETGLOA === locus = HUMBETGLOA ignored annotation: /organism="Homo sapiens" ignored annotation: /note="sequence found in a Melanesian population" ignored annotation: /db_xref="taxon:9606" ignored annotation: /haplotype="C4" ignored annotation: allele replace(111,"t") ignored annotation: allele replace(263,"t") ignored annotation: /note="Rsa I polymorphism" ignored annotation: allele replace(273,"c") ignored annotation: allele replace(286..287,"") ignored annotation: /note="2 bp insertion of AT" ignored annotation: allele replace(288,"t") ignored annotation: allele replace(295..296,"") ignored annotation: /note="1 bp deletion of C or 2 bp deletion of CT" ignored annotation: allele replace(347,"c") ignored annotation: allele replace(476,"t") ignored annotation: allele replace(500,"c") CDS = 866..957,1088..1310,2161..2289 ignored annotation: /codon_start=1 ignored annotation: /product="beta-globin" ignored annotation: /db_xref="PID:g532506" translation = MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH ignored annotation: exon <866..957 ignored annotation: /number=1 ignored annotation: allele replace(874,"c") ignored annotation: intron 958..1087 ignored annotation: /number=1 ignored annotation: exon 1088..1310 ignored annotation: /number=2 ignored annotation: intron 1311..2160 ignored annotation: /number=2 ignored annotation: allele replace(1326,"g") ignored annotation: /note="Ava II polymorphism" ignored annotation: allele replace(1384,"g") ignored annotation: allele replace(1391,"t") ignored annotation: allele replace(1976,"t") ignored annotation: exon 2161..>2289 ignored annotation: /number=3 ignored annotation: allele replace(2522,"c") ignored annotation: allele replace(2602,"a") ignored annotation: allele replace(2604,"c") ignored annotation: allele replace(2760,"t") ignored annotation: /note="Hinf I polymorphism" ignored annotation: allele replace(2913,"g") ignored annotation: BASE COUNT 810 a 601 c 599 g 992 t // ** orig/raws/HUMBETGLOA:116: missing "mRNA" entry === HUMBFXIII === locus = HUMBFXIII ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="fibroblast, leukocyte" ignored annotation: /dev_stage="fetus" ignored annotation: /tissue_type="liver" ignored annotation: /map="6p25-p24" mRNA = <2931..2994,7093..7293,8181..8366,9073..9249,9606..9782,12684..12863,12951..13136,14251..14433,17308..17508,19264..19446,29399..29612,30723..30943 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /product="coagulation factor XIIIb" ignored annotation: gene join(<2931..2994,7093..7293,8181..8366,9073..9249, ignored annotation: 9606..9782,12684..12863,12951..13136,14251..14433, ignored annotation: 17308..17508,19264..19446,29399..29612,30723..30943) ignored annotation: /gene="F13A1" CDS = 2931..2994,7093..7293,8181..8366,9073..9249,9606..9782,12684..12863,12951..13136,14251..14433,17308..17508,19264..19446,29399..29612,30723..30756 ignored annotation: /gene="F13A1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-614" ignored annotation: /product="coagulation factor XIIIb" ignored annotation: /db_xref="PID:g179417" translation = MRLKNLTFIIILIISGELYAEEKPCGFPHVENGRIAQYYYTFKSFYFPMSIDKKLSFFCLAGYTTESGRQEEQTTCTTEGWSPEPRCFKKCTKPDLSNGYISDVKLLYKIQENMHYGCASGYKTTGGKDEEVVQCLSDGWSSQPTCRKEHETCLAPELYNGNYSTTQKTFKVKDKVQYECATGYYTAGGKKTEEVECLTYGWSLTPKCTKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHENYYLSGSDLIQCYNFGWYPESPVCEGRRNRCPPPPLPINSKIQTHSTTYRHGEIVHIECELNFEIHGSAEIRCEDGKSTEPPKCIEGQEKVACEEPPFIENGAANLHSKIYYNGDKVTYACKSGYLLHGSNEITCNRGKWTLPPECVENNENCKHPPVVMNGAVADGILASYATGSSVEYRCNEYYLLRGSKISRCEQGKWSSPPVCLEPCTVNVDYMNRNNIEMKWKYEGKVLHGDLIDFVCKQGYDLSPLTPLSELSVQCNRGEVKYPLCTRKESKGMCTSPPLIKHGVIISSTVDTYENGSSVEYRCFDHHFLEGSREAYCLDGMWTTPPLCLEPCTLSFTEMEKNNLLLKWDFDNRPHILHGEYIEFICRGDTYPAELYITGSILRMQCDRGQLKYPRCIPRQSTLSYQEPLRT ignored annotation: exon <2931..2994 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=1 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 2995..7092 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=1 ignored annotation: exon 7093..7293 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=2 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 7294..8180 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=2 ignored annotation: exon 8181..8366 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=3 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 8367..9072 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=3 ignored annotation: exon 9073..9249 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=4 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 9250..9605 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=4 ignored annotation: exon 9606..9782 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=5 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 9783..12683 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=5 ignored annotation: exon 12684..12863 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=6 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 12864..12950 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=6 ignored annotation: exon 12951..13136 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=7 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 13137..14250 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=7 ignored annotation: exon 14251..14433 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=8 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 14434..17307 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=8 ignored annotation: exon 17308..17508 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=9 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 17509..19263 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=9 ignored annotation: exon 19264..19446 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=10 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 19447..29398 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=10 ignored annotation: exon 29399..29612 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=11 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: intron 29613..30722 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=11 ignored annotation: exon 30723..30943 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: /number=12 ignored annotation: /product="coagulation factor XIIIb" ignored annotation: polyA_signal 30919..30924 ignored annotation: /gene="F13A1" ignored annotation: /note="G00-120-614" ignored annotation: BASE COUNT 9901 a 5689 c 5955 g 11661 t mRNA range 2931..2994 mRNA range 7093..7293 mRNA range 8181..8366 mRNA range 9073..9249 mRNA range 9606..9782 mRNA range 12684..12863 mRNA range 12951..13136 mRNA range 14251..14433 mRNA range 17308..17508 mRNA range 19264..19446 mRNA range 29399..29612 mRNA range 30723..30943 CDS range 2931..2994 CDS range 7093..7293 CDS range 8181..8366 CDS range 9073..9249 CDS range 9606..9782 CDS range 12684..12863 CDS range 12951..13136 CDS range 14251..14433 CDS range 17308..17508 CDS range 19264..19446 CDS range 29399..29612 CDS range 30723..30756 seq_ini = 1 seq_fin = 33206 i = 30756 last codon bas = ca[tag]aaa last codon lab = EF[DEF]YYY === HUMBHSD === locus = HUMBHSD ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leucocyte" ignored annotation: /tissue_type="blood" ignored annotation: /map="1p13.1" ignored annotation: exon 1387..1439 ignored annotation: /gene="HSD3B" ignored annotation: /note="G00-120-056" mRNA = 1387..1439,1569..1798,5682..5846,8014..9231 ignored annotation: /gene="HSD3B" ignored annotation: /note="G00-120-056" ignored annotation: gene join(1387..1439,1569..1798,5682..5846,8014..9231) ignored annotation: /gene="HSD3B" ignored annotation: exon 1569..1798 ignored annotation: /gene="HSD3B" ignored annotation: /note="G00-120-056" CDS = 1654..1798,5682..5846,8014..8825 ignored annotation: /gene="HSD3B" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-056" ignored annotation: /product="3-beta-hydroxysteroid ignored annotation: dehydrogenase/delta-5-delta-4-isomerase" ignored annotation: /db_xref="PID:g179468" translation = MTGWSCLVTGAGGFLGQRIIRLLVKEKELKEIRVLDKAFGPELREEFSKLQNKTKLTVLEGDILDEPFLKRACQDVSVIIHTACIIDVFGVTHRESIMNVNVKGTQLLLEACVQASVPVFIYTSSIEVAGPNSYKEIIQNGHEEEPLENTWPAPYPHSKKLAEKAVLAANGWNLKNGGTLYTCALRPMYIYGEGSRFLSASINEALNNNGILSSVGKFSTVNPVYVGNVAWAHILALRALQDPKKAPSIRGQFYYISDDTPHQSYDNLNYTLSKEFGLRLDSRWSFPLSLMYWIGFLLEIVSFLLRPIYTYRPPFNRHIVTLSNSVFTFSYKKAQRDLAYKPLYSWEEAKQKTVEWVGSLVDRHKENLKSKTQ ignored annotation: exon 5682..5846 ignored annotation: /gene="HSD3B" ignored annotation: /note="G00-120-056" ignored annotation: exon 8014..9231 ignored annotation: /gene="HSD3B" ignored annotation: /note="G00-120-056" ignored annotation: BASE COUNT 2604 a 2198 c 1938 g 2664 t mRNA range 1387..1439 mRNA range 1569..1798 mRNA range 5682..5846 mRNA range 8014..9231 CDS range 1654..1798 CDS range 5682..5846 CDS range 8014..8825 seq_ini = 1 seq_fin = 9404 i = 8825 last codon bas = ag[tga]ttt last codon lab = EF[DEF]YYY === HUMBLYM1 === locus = HUMBLYM1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="1p32" ignored annotation: gene 107..156 ignored annotation: /gene="BLYM" ignored annotation: exon <107..156 ignored annotation: /gene="BLYM" ignored annotation: /note="Blym-1 protein; G00-119-038" ignored annotation: /number=1 CDS = 107..156,535..661 ignored annotation: /note="Blym-1 protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g179498" translation = MTLRGLRLQWRKQLKMRARPCLLEKRKKIVSYISFLLSDLKGTLAIDSLYSLQFAGGN ignored annotation: intron 157..534 ignored annotation: /note="Blym-1 cds intron a" ignored annotation: repeat_region 266..313 ignored annotation: /note="Alu-like repeat" ignored annotation: exon 535..>661 ignored annotation: /note="Blym-1 protein" ignored annotation: /number=2 ignored annotation: BASE COUNT 314 a 178 c 209 g 303 t // ** orig/raws/HUMBLYM1:68: missing "mRNA" entry === HUMBNPA === locus = HUMBNPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 400..1864 ignored annotation: /note="brain natriuretic protein mRNA and introns" CDS = 498..629,861..1116,1659..1675 ignored annotation: /note="brain natriuretic protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g179515" translation = MDPQTAPSRALLLLLFLHLAFLGGRSHPLGSPGSASDLETSGLQEQRNHLQGKLSELQVEQTSLEPLQESPRPTGVWKSREVATEGIRGHRKMVLYTLRAPRSPKMVQGSGCFGRKMDRISSSSGLGCKVLRRH ignored annotation: exon <498..629 ignored annotation: /note="brain natriuretic protein" ignored annotation: /number=1 ignored annotation: intron 630..860 ignored annotation: /note="brain natriuretic protein, intron A" ignored annotation: exon 861..1116 ignored annotation: /number=2 ignored annotation: intron 1117..1658 ignored annotation: /note="brain natriuretic protein, intron B" ignored annotation: exon 1659..>1675 ignored annotation: /note="brain natriuretic protein" ignored annotation: /number=3 ignored annotation: BASE COUNT 430 a 552 c 519 g 421 t // ** orig/raws/HUMBNPA:76: missing "mRNA" entry === HUMCACY === locus = HUMCACY ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="1q21-q25" ignored annotation: prim_transcript 1372..>2746 ignored annotation: /note="CCY mRNA and introns" ignored annotation: intron 1416..2002 ignored annotation: /note="CCY intron A" ignored annotation: exon <2024..2161 ignored annotation: /gene="CACY" ignored annotation: /note="calcyclin, (first expressed exon); G00-119-048" ignored annotation: /number=2 ignored annotation: gene 2024..2161 ignored annotation: /gene="CACY" CDS = 2024..2161,2534..2668 ignored annotation: /note="calcyclin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g179766" translation = MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG ignored annotation: intron 2162..2533 ignored annotation: /note="CCY intron B" ignored annotation: exon 2534..>2668 ignored annotation: /note="calcyclin" ignored annotation: /number=3 ignored annotation: BASE COUNT 732 a 987 c 1110 g 842 t // ** orig/raws/HUMCACY:114: missing "mRNA" entry === HUMCAPG === locus = HUMCAPG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="14q11.2" ignored annotation: CAAT_signal 253..256 ignored annotation: TATA_signal 293..297 ignored annotation: prim_transcript 322..3020 ignored annotation: /note="cathepsin G mRNA and introns" ignored annotation: gene join(350..404,1161..1308,1763..1898,2074..2328,2763..2936) ignored annotation: /gene="CTSG" CDS = 350..404,1161..1308,1763..1898,2074..2328,2763..2936 ignored annotation: /gene="CTSG" ignored annotation: /note="cathepsin G" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-822" ignored annotation: /db_xref="PID:g179915" translation = MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMRSFKLLDQMETPL ignored annotation: exon <350..404 ignored annotation: /gene="CTSG" ignored annotation: /note="cathepsin G" ignored annotation: /number=1 ignored annotation: intron 405..1160 ignored annotation: /note="cathepsin G Intron A" ignored annotation: exon 1161..1308 ignored annotation: /gene="CTSG" ignored annotation: /number=2 ignored annotation: intron 1309..1762 ignored annotation: /note="cathepsin G Intron B" ignored annotation: exon 1763..1898 ignored annotation: /gene="CTSG" ignored annotation: /number=3 ignored annotation: intron 1899..2073 ignored annotation: /note="cathepsin G Intron C" ignored annotation: exon 2074..2328 ignored annotation: /gene="CTSG" ignored annotation: /number=4 ignored annotation: intron 2329..2762 ignored annotation: /note="cathepsin G Intron D" ignored annotation: exon 2763..>2936 ignored annotation: /gene="CTSG" ignored annotation: /note="cathepsin G" ignored annotation: /number=5 ignored annotation: polyA_signal 2990..2995 ignored annotation: BASE COUNT 990 a 960 c 959 g 825 t // ** orig/raws/HUMCAPG:131: missing "mRNA" entry === HUMCBRG === locus = HUMCBRG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 185..566,1112..1219,2608..3044 ignored annotation: /gene="CBR" ignored annotation: gene 185..3044 ignored annotation: /gene="CBR" ignored annotation: exon 185..566 ignored annotation: /gene="CBR" ignored annotation: /number=1 CDS = 278..566,1112..1219,2608..3044 ignored annotation: /gene="CBR" ignored annotation: /EC_number="1.1.1.184" ignored annotation: /codon_start=1 ignored annotation: /product="carbonyl reductase" ignored annotation: /db_xref="PID:g179978" translation = MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW ignored annotation: exon 1112..1219 ignored annotation: /gene="CBR" ignored annotation: /number=2 ignored annotation: exon 2608..3044 ignored annotation: /gene="CBR" ignored annotation: /number=3 ignored annotation: BASE COUNT 755 a 902 c 802 g 867 t mRNA range 185..566 mRNA range 1112..1219 mRNA range 2608..3044 CDS range 278..566 CDS range 1112..1219 CDS range 2608..3044 seq_ini = 1 seq_fin = 3326 i = 3044 last codon bas = gg[tga]gct last codon lab = EF[DEF]NNN === HUMCD19A === locus = HUMCD19A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_lib="human genomic cosmid library" ignored annotation: /map="Unassigned" ignored annotation: protein_bind 1260..1287 ignored annotation: /gene="CD19" ignored annotation: /note="medium affinity; G00-127-605" ignored annotation: /bound_moiety="BSAP" ignored annotation: protein_bind 1321..1347 ignored annotation: /gene="CD19" ignored annotation: /note="high affinity; G00-127-605" ignored annotation: /bound_moiety="BSAP" ignored annotation: exon 1359..1494 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=1 mRNA = 1359..1494,1752..2018,2317..2520,2640..2915,4849..4959,5558..5606,5917..6005,6428..6541,6676..6780,6860..6928,7030..7086,7175..7231,8083..8175,8279..8385,8548..8743 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: gene join(1359..1494,1752..2018,2317..2520,2640..2915, ignored annotation: 4849..4959,5558..5606,5917..6005,6428..6541,6676..6780, ignored annotation: 6860..6928,7030..7086,7175..7231,8083..8175,8279..8385, ignored annotation: 8548..8743) ignored annotation: /gene="CD19" CDS = 1407..1494,1752..2018,2317..2520,2640..2915,4849..4959,5558..5606,5917..6005,6428..6541,6676..6780,6860..6928,7030..7086,7175..7231,8083..8175,8279..8370 ignored annotation: /gene="CD19" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-127-605" ignored annotation: /db_xref="PID:g901823" translation = MPPPRLLFFLLFLTPMEVRPEEPLVVKVEEGDNAVLQCLKGTSDGPTQQLTWSRESPLKPFLKLSLGLPGLGIHMRPLASWLFIFNVSQQMGGFYLCQPGPPSEKAWQPGWTVNVEGSGELFRWNVSDLGGLGCGLKNRSSEGPSSPSGKLMSPKLYVWAKDRPEIWEGEPPCVPPRDSLNQSLSQDLTMAPGSTLWLSCGVPPDSVSRGPLSWTHVHPKGPKSLLSLELKDDRPARDMWVMETGLLLPRATAQDAGKYYCHRGNLTMSFHLEITARPVLWHWLLRTGGWKVSAVTLAYLIFCLCSLVGILHLQRALVLRRKRKRMTDPTRRFFKVTPPPGSGPQNQYGNVLSLPTPTSGLGRAQRWAAGLGGTAPSYGNPSSDVQADGALGSRSPPGVGPEEEEGEGYEEPDSEEDSEFYENDSNLGQDQLSQDGSGYENPEDEPLGPEDEDSFSNAESYENEDEELTQPVARTMDFLSPHGSAWDPSREATSLGSQSYEDMRGILYAAPQLRSIRGQPGPNHEEDADSYENMDNPDGPDPAWGGGGRMGTWSTR ignored annotation: intron 1495..1751 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=1 ignored annotation: exon 1752..2018 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=2 ignored annotation: intron 2019..2316 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=2 ignored annotation: exon 2317..2520 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=3 ignored annotation: intron 2521..2639 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=3 ignored annotation: exon 2640..2915 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=4 ignored annotation: intron 2916..4848 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=4 ignored annotation: exon 4849..4959 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=5 ignored annotation: intron 4960..5557 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=5 ignored annotation: exon 5558..5606 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=6 ignored annotation: intron 5607..5916 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=6 ignored annotation: exon 5917..6005 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=7 ignored annotation: intron 6006..6427 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=7 ignored annotation: exon 6428..6541 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=8 ignored annotation: intron 6542..6675 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=8 ignored annotation: exon 6676..6780 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=9 ignored annotation: intron 6781..6859 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=9 ignored annotation: exon 6860..6928 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=10 ignored annotation: intron 6929..7029 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=10 ignored annotation: exon 7030..7086 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=11 ignored annotation: intron 7087..7174 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=11 ignored annotation: exon 7175..7231 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=12 ignored annotation: intron 7232..8082 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=12 ignored annotation: exon 8083..8175 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=13 ignored annotation: intron 8176..8278 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=13 ignored annotation: exon 8279..8385 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=14 ignored annotation: intron 8386..8547 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=14 ignored annotation: exon 8548..8743 ignored annotation: /gene="CD19" ignored annotation: /note="G00-127-605" ignored annotation: /number=15 ignored annotation: BASE COUNT 1757 a 2679 c 2182 g 2125 t mRNA range 1359..1494 mRNA range 1752..2018 mRNA range 2317..2520 mRNA range 2640..2915 mRNA range 4849..4959 mRNA range 5558..5606 mRNA range 5917..6005 mRNA range 6428..6541 mRNA range 6676..6780 mRNA range 6860..6928 mRNA range 7030..7086 mRNA range 7175..7231 mRNA range 8083..8175 mRNA range 8279..8385 mRNA range 8548..8743 CDS range 1407..1494 CDS range 1752..2018 CDS range 2317..2520 CDS range 2640..2915 CDS range 4849..4959 CDS range 5558..5606 CDS range 5917..6005 CDS range 6428..6541 CDS range 6676..6780 CDS range 6860..6928 CDS range 7030..7086 CDS range 7175..7231 CDS range 8083..8175 CDS range 8279..8370 seq_ini = 1 seq_fin = 8743 i = 8370 last codon bas = gg[tga]tcc last codon lab = EF[DEF]YYY === HUMCD79B === locus = HUMCD79B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="B cell" ignored annotation: exon <300..400 ignored annotation: /number=1 CDS = 334..400,1208..1258,2206..2517,2706..2824,3122..3163,3273..3371 ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g567110" translation = MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE ignored annotation: intron 401..1207 ignored annotation: /number=1 ignored annotation: exon 1208..1258 ignored annotation: /number=2 ignored annotation: intron 1259..2205 ignored annotation: /number=2 ignored annotation: exon 2206..2517 ignored annotation: /number=3 ignored annotation: intron 2518..2705 ignored annotation: /number=3 ignored annotation: exon 2706..2824 ignored annotation: /number=4 ignored annotation: intron 2825..3121 ignored annotation: /number=4 ignored annotation: exon 3122..3163 ignored annotation: /number=5 ignored annotation: intron 3164..3272 ignored annotation: /number=5 ignored annotation: exon 3273..3832 ignored annotation: /number=6 ignored annotation: polyA_signal 3833..3838 ignored annotation: BASE COUNT 790 a 1164 c 1225 g 758 t 1 others 2641 cccttgtagg cctaanagtt ggacttgtgg cccaggctca caaaccccac ccctgttccc ** orig/raws/HUMCD79B:100: invalid base letter "n" === HUMCD7AA === locus = HUMCD7AA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="17q25.2-q25.3" ignored annotation: gene join(564..645,1077..1391,1649..1863,2624..2734) ignored annotation: /gene="CD7" CDS = 564..645,1077..1391,1649..1863,2624..2734 ignored annotation: /gene="CD7" ignored annotation: /note="CD7 antigen protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-770" ignored annotation: /db_xref="PID:g180164" translation = MAGPPRLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLRQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEVNVYGSGTLVLVTEEQSQGWHRCSDAPPRASALPAPPTGSALPDPQTASALPDPPAASALPAALAVISFLLGLGLGVACVLARTQIKKLCSWRDKNSAACVVYEDMSHSRCNTLSSPNQYQ ignored annotation: exon <564..645 ignored annotation: /gene="CD7" ignored annotation: /note="CD7 antigen protein" ignored annotation: /number=1 ignored annotation: intron 646..1076 ignored annotation: /note="CD7 antigen protein intron A" ignored annotation: exon 1077..1391 ignored annotation: /gene="CD7" ignored annotation: /number=2 ignored annotation: intron 1392..1648 ignored annotation: /note="CD7 antigen protein intron B" ignored annotation: exon 1649..1863 ignored annotation: /gene="CD7" ignored annotation: /number=3 ignored annotation: intron 1864..2623 ignored annotation: /note="CD7 antigen protein intron C" ignored annotation: exon 2624..>2734 ignored annotation: /gene="CD7" ignored annotation: /note="CD7 antigen protein" ignored annotation: /number=4 ignored annotation: BASE COUNT 534 a 1139 c 1019 g 588 t // ** orig/raws/HUMCD7AA:115: missing "mRNA" entry === HUMCEL === locus = HUMCEL ignored annotation: /organism="Homo sapiens" ignored annotation: /isolate="1" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /sex="male" ignored annotation: /tissue_lib="lambda-DASH" ignored annotation: /map="9q34.3" mRNA = 1630..1717,4043..4193,4279..4401,4679..4876,6160..6290,6468..6575,6718..6835,8301..8487,8687..8890,10096..10293,10620..11460 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: exon 1630..1717 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=1 ignored annotation: gene join(1630..1717,4043..4193,4279..4401,4679..4876, ignored annotation: 6160..6290,6468..6575,6718..6835,8301..8487,8687..8890, ignored annotation: 10096..10293,10620..11460) ignored annotation: /gene="CEL" CDS = 1643..1717,4043..4193,4279..4401,4679..4876,6160..6290,6468..6575,6718..6835,8301..8487,8687..8890,10096..10293,10620..11364 ignored annotation: /gene="CEL" ignored annotation: /EC_number="3.1.1.3" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-127-527" ignored annotation: /product="carboxyl ester lipase" ignored annotation: /db_xref="PID:g180244" translation = MLTMGRLQLVVLGLTCCWAVASAAKLGAVYTEGGFVEGVNKKLGLLGDSVDIFKGIPFAAPTKALENPQPHPGWQGTLKAKNFKKRCLQATITQDSTYGDEDCLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFGGDPNNITLFGESAGGASVSLQTLSPYNKGLIRRAISQSGVALSPWVIQKNPLFWAKKVAEKVGCPVGDAARMAQCLKVTDPRALTLAYKVPLAGLEYPMLHYVGFVPVIDGDFIPADPINLYANAADIDYIAGTNNMDGHIFASIDMPAINKGNKKVTEEDFYKLVSEFTITKGLRGAKTTFDVYTESWAQDPSQENKKKTVVDFETDVLFLVPTEIALAQHRANAKSAKTYAYLFSHPSRMPVYPKWVGADHADDIQYVFGKPFATPTGYRPQDRTVSKAMIAYWTNFAKTGDPNMGDSAVPTHWEPYTTENSGYLEITKKMGSSSMKRSLRTNFLRYWTLTYLALPTVTDQEATPVPPTGDSEATPVPPTGDSETAPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDAGPPPVPPTGDSGAPPVPPTGDSGAPPVTPTGDSETAPVPPTGDSGAPPVPPTGDSEAAPVPPTDDSKEAQMPAVIRF ignored annotation: intron 1718..4042 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=1 ignored annotation: exon 4043..4193 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=2 ignored annotation: intron 4194..4278 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=2 ignored annotation: exon 4279..4401 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=3 ignored annotation: intron 4402..4678 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=3 ignored annotation: exon 4679..4876 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=4 ignored annotation: intron 4877..6159 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=4 ignored annotation: exon 6160..6290 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=5 ignored annotation: intron 6291..6467 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=5 ignored annotation: exon 6468..6575 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=6 ignored annotation: intron 6576..6717 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=6 ignored annotation: exon 6718..6835 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=7 ignored annotation: intron 6836..8300 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=7 ignored annotation: exon 8301..8487 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=8 ignored annotation: intron 8488..8686 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=8 ignored annotation: exon 8687..8890 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=9 ignored annotation: intron 8891..10095 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=9 ignored annotation: exon 10096..10293 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=10 ignored annotation: intron 10294..10619 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=10 ignored annotation: exon 10620..11460 ignored annotation: /gene="CEL" ignored annotation: /note="G00-127-527" ignored annotation: /number=11 ignored annotation: BASE COUNT 2461 a 3514 c 3264 g 2263 t mRNA range 1630..1717 mRNA range 4043..4193 mRNA range 4279..4401 mRNA range 4679..4876 mRNA range 6160..6290 mRNA range 6468..6575 mRNA range 6718..6835 mRNA range 8301..8487 mRNA range 8687..8890 mRNA range 10096..10293 mRNA range 10620..11460 CDS range 1643..1717 CDS range 4043..4193 CDS range 4279..4401 CDS range 4679..4876 CDS range 6160..6290 CDS range 6468..6575 CDS range 6718..6835 CDS range 8301..8487 CDS range 8687..8890 CDS range 10096..10293 CDS range 10620..11364 seq_ini = 1 seq_fin = 11502 i = 11364 last codon bas = tt[tag]cgt last codon lab = EF[DEF]YYY === HUMCFVII === locus = HUMCFVII ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="13q34" ignored annotation: prim_transcript 487..12686 ignored annotation: /note="factor VII pre-mRNA (alt.)" ignored annotation: prim_transcript 487..12660 ignored annotation: /note="factor VII pre-mRNA (alt.)" ignored annotation: prim_transcript 487..12664 ignored annotation: /note="factor VII pre-mRNA (alt.)" ignored annotation: exon <522..585 ignored annotation: /gene="F7" ignored annotation: /note="factor VII; G00-119-897" ignored annotation: gene 522..585 ignored annotation: /gene="F7" CDS = 522..585,1654..1719,4294..4454,6383..6407,6478..6591,8307..8447,9419..9528,10124..10247,11064..11659 ignored annotation: /note="factor VII" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g180334" translation = MVSQALRLLCLLLGLQGCLAAGGVAKASGGETRDMPWKPGPHRVFVTQEEAHGVLHRRRRANAFLEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKRNASKPQGRIVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRPGVLLRAPFP ignored annotation: intron 586..1653 ignored annotation: /note="intron A1" ignored annotation: exon 1654..1719 ignored annotation: /note="optional" ignored annotation: intron 1720..4293 ignored annotation: /note="intron A" ignored annotation: exon 4294..4454 ignored annotation: /number=2 ignored annotation: intron 4455..6382 ignored annotation: /note="intron B" ignored annotation: exon 6383..6407 ignored annotation: /number=3 ignored annotation: intron 6408..6477 ignored annotation: /note="intron C" ignored annotation: exon 6478..6591 ignored annotation: /number=4 ignored annotation: intron 6592..8306 ignored annotation: /note="Intron D" ignored annotation: exon 8307..8447 ignored annotation: /number=5 ignored annotation: intron 8448..9418 ignored annotation: /note="Intron E" ignored annotation: exon 9419..9528 ignored annotation: /number=6 ignored annotation: intron 9529..10123 ignored annotation: /note="Intron F" ignored annotation: exon 10124..10247 ignored annotation: /number=7 ignored annotation: intron 10248..11063 ignored annotation: /note="Intron G" ignored annotation: exon 11064..>11659 ignored annotation: /note="factor VII" ignored annotation: BASE COUNT 2532 a 3888 c 3902 g 2528 t // ** orig/raws/HUMCFVII:305: missing "mRNA" entry === HUMCHYMASE === locus = HUMCHYMASE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="mast cell" ignored annotation: /tissue_type="placenta" ignored annotation: /map="Unassigned" ignored annotation: CAAT_signal 5018..5023 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: TATA_signal 5099..5104 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: 5'UTR 5128..5157 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: gene join(5158..5215,5886..5890) ignored annotation: /gene="CMA1" CDS = 5158..5215,5886..6036,6786..6921,7108..7362,7733..7876 ignored annotation: /gene="CMA1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-127-603" ignored annotation: /product="mast cell chymase" ignored annotation: /db_xref="PID:g180542" translation = MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN ignored annotation: sig_peptide join(5158..5215,5886..5890) ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: intron 5216..5885 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=1 ignored annotation: exon 5886..6036 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=2 ignored annotation: mat_peptide join(5891..6036,6786..6921,7108..7362,7733..7873) ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /product="mast cell chymase" ignored annotation: intron 6037..6785 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=2 ignored annotation: exon 6786..6921 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=3 ignored annotation: intron 6922..7107 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=3 ignored annotation: exon 7108..7362 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=4 ignored annotation: intron 7363..7732 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: /number=4 ignored annotation: polyA_signal 8020..8025 ignored annotation: /gene="CMA1" ignored annotation: /note="G00-127-603" ignored annotation: BASE COUNT 2399 a 1928 c 1683 g 2113 t 1 others 6661 gagatgggta gagtccggcn acccagtgac agagtttagt cctcttttct cagaatgagc ** orig/raws/HUMCHYMASE:197: invalid base letter "n" === HUMCKMT === locus = HUMCKMT ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda-hCK39." ignored annotation: /dev_stage="adult" ignored annotation: /tissue_type="placenta" ignored annotation: /map="15" ignored annotation: exon 241..552 ignored annotation: /gene="CKMT" ignored annotation: /number=1 ignored annotation: gene 241..5570 ignored annotation: /gene="CKMT" ignored annotation: sig_peptide 404..517 ignored annotation: /gene="CKMT" CDS = 404..552,1157..1355,1559..1654,2041..2262,2392..2477,2593..2716,4378..4512,5014..5139,5343..5459 ignored annotation: /gene="CKMT" ignored annotation: /EC_number="2.7.3.2" ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="creatine kinase" ignored annotation: /db_xref="PID:g180590" translation = MAGPFSRLLSARPGLRLLALAGAGSLAAGFLLRPEPVRAASERRRLYPPSAEYPDLRKHNNCMASHLTPAVYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVFADLFDPVIQERHNGYDPRTMKHTTDLDASKIRSGYFDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVVVDALSGLKGDLAGRYYRLSEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHTRVISMEKGGNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPLLSKDSRFPKILENLRLQKRGTGGVDTAATGGVFDISNLDRLGKSEVELVQLVIDGVNYLIDCERRLERGQDIRIPTPVIHTKH ignored annotation: mat_peptide join(518..552,1157..1355,1559..1654,2041..2262,2392..2477, ignored annotation: 2593..2716,4378..4512,5014..5139,5343..5456) ignored annotation: /gene="CKMT" ignored annotation: /EC_number="2.7.3.2" ignored annotation: /product="creatine kinase" ignored annotation: intron 553..1156 ignored annotation: /gene="CKMT" ignored annotation: /number=1 ignored annotation: exon 1157..1355 ignored annotation: /gene="CKMT" ignored annotation: /number=2 ignored annotation: intron 1356..1558 ignored annotation: /gene="CKMT" ignored annotation: /number=2 ignored annotation: exon 1559..1654 ignored annotation: /gene="CKMT" ignored annotation: /number=3 ignored annotation: intron 1655..2040 ignored annotation: /gene="CKMT" ignored annotation: /number=3 ignored annotation: exon 2041..2262 ignored annotation: /gene="CKMT" ignored annotation: /number=4 ignored annotation: intron 2263..2391 ignored annotation: /gene="CKMT" ignored annotation: /number=4 ignored annotation: exon 2392..2477 ignored annotation: /gene="CKMT" ignored annotation: /number=5 ignored annotation: intron 2478..2592 ignored annotation: /gene="CKMT" ignored annotation: /number=5 ignored annotation: exon 2593..2716 ignored annotation: /gene="CKMT" ignored annotation: /number=6 ignored annotation: intron 2717..4377 ignored annotation: /gene="CKMT" ignored annotation: /number=6 ignored annotation: exon 4378..4512 ignored annotation: /gene="CKMT" ignored annotation: /number=7 ignored annotation: intron 4513..5013 ignored annotation: /gene="CKMT" ignored annotation: /number=7 ignored annotation: exon 5014..5139 ignored annotation: /gene="CKMT" ignored annotation: /number=8 ignored annotation: intron 5140..5342 ignored annotation: /gene="CKMT" ignored annotation: /number=8 ignored annotation: exon 5343..5570 ignored annotation: /gene="CKMT" ignored annotation: /number=9 ignored annotation: BASE COUNT 1746 a 1718 c 1720 g 1712 t // ** orig/raws/HUMCKMT:221: missing "mRNA" entry === HUMCNP === locus = HUMCNP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="liver" ignored annotation: misc_feature 81..85 ignored annotation: /gene="CNP2" ignored annotation: /note="Y box" ignored annotation: misc_feature 88..93 ignored annotation: /gene="CNP2" ignored annotation: /note="GC box" ignored annotation: misc_feature 100..105 ignored annotation: /gene="CNP2" ignored annotation: /note="GC box" ignored annotation: TATA_signal 133..138 ignored annotation: /gene="CNP2" ignored annotation: gene join(309..398,843..1133) ignored annotation: /gene="CNP2" CDS = 309..398,843..1133 ignored annotation: /gene="CNP2" ignored annotation: /codon_start=1 ignored annotation: /product="C-type natriuretic peptide" ignored annotation: /db_xref="PID:g180677" translation = MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGGGANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGSMSGLGC ignored annotation: intron 399..842 ignored annotation: /gene="CNP2" ignored annotation: BASE COUNT 279 a 568 c 599 g 253 t // ** orig/raws/HUMCNP:75: missing "mRNA" entry === HUMCOL2A1Z === locus = HUMCOL2A1Z ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /dev_stage="adult" ignored annotation: /sex="male" ignored annotation: /tissue_type="blood" ignored annotation: /map="12q13" ignored annotation: gene 1..31001 ignored annotation: /gene="COL2A1" ignored annotation: exon 1..85 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=1 CDS = 1..85,4191..4397,5892..5908,6122..6154,6259..6291,6397..6450,6614..6715,7694..7771,8399..8443,8555..8608,9009..9062,9838..9891,10266..10319,10451..10504,10811..10855,11391..11444,14507..14551,15031..15084,16598..16696,16993..17037,17130..17228,17418..17471,17996..18103,18469..18522,18607..18705,18846..18899,19340..19438,19832..19885,20292..20345,20696..20749,20993..21046,21289..21333,21480..21578,21813..21920,22263..22316,22595..22648,23025..23078,23451..23504,23759..23866,24358..24411,24856..24909,25656..25817,26015..26122,26293..26400,26755..26808,26981..27088,27254..27307,27489..27596,27841..27894,28338..28445,28803..29091,29546..29733,30077..30319,30855..31001 ignored annotation: /gene="COL2A1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-063" ignored annotation: /product="alpha-1 type II collagen" ignored annotation: /db_xref="PID:g450394" translation = MIRLGAPQSLVLLTLLVAAVLRCQGQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL ignored annotation: intron 86..4190 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[6] ignored annotation: /number=1 ignored annotation: exon 4191..4397 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[4] ignored annotation: /number=2 ignored annotation: intron 4398..5891 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[4] ignored annotation: /number=2 ignored annotation: exon 5892..5908 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=3 ignored annotation: intron 5909..6121 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=3 ignored annotation: exon 6122..6154 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=4 ignored annotation: intron 6155..6258 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=4 ignored annotation: exon 6259..6291 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=5 ignored annotation: intron 6292..6396 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=5 ignored annotation: exon 6397..6450 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=6 ignored annotation: intron 6451..6613 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=6 ignored annotation: exon 6614..6715 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=7 ignored annotation: intron 6716..7693 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=7 ignored annotation: exon 7694..7771 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=8 ignored annotation: intron 7772..8398 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=8 ignored annotation: exon 8399..8443 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=9 ignored annotation: intron 8444..8554 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[5] ignored annotation: /number=9 ignored annotation: exon 8555..8608 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=10 ignored annotation: intron 8609..9008 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=10 ignored annotation: exon 9009..9062 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=11 ignored annotation: intron 9063..9837 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=11 ignored annotation: exon 9838..9891 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=12 ignored annotation: intron 9892..10265 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=12 ignored annotation: exon 10266..10319 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=13 ignored annotation: intron 10320..10450 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=13 ignored annotation: exon 10451..10504 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=14 ignored annotation: intron 10505..10810 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=14 ignored annotation: exon 10811..10855 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=15 ignored annotation: intron 10856..11390 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=15 ignored annotation: exon 11391..11444 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=16 ignored annotation: intron 11445..14506 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=16 ignored annotation: exon 14507..14551 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=17 ignored annotation: intron 14552..15030 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=17 ignored annotation: exon 15031..15084 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=18 ignored annotation: intron 15085..16597 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=18 ignored annotation: exon 16598..16696 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=19 ignored annotation: intron 16697..16992 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=19 ignored annotation: exon 16993..17037 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=20 ignored annotation: intron 17038..17129 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=20 ignored annotation: exon 17130..17228 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=21 ignored annotation: intron 17229..17417 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=21 ignored annotation: exon 17418..17471 ignored annotation: /gene="COL2A1" ignored annotation: /note="150960; G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=22 ignored annotation: intron 17472..17995 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=22 ignored annotation: exon 17996..18103 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=23 ignored annotation: intron 18104..18468 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=23 ignored annotation: exon 18469..18522 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=24 ignored annotation: intron 18523..18606 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=24 ignored annotation: exon 18607..18705 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=25 ignored annotation: intron 18706..18845 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=25 ignored annotation: exon 18846..18899 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=26 ignored annotation: intron 18900..19339 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=26 ignored annotation: exon 19340..19438 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=27 ignored annotation: intron 19439..19831 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=27 ignored annotation: exon 19832..19885 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=28 ignored annotation: intron 19886..20291 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=28 ignored annotation: exon 20292..20345 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=29 ignored annotation: intron 20346..20695 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[3] ignored annotation: /number=29 ignored annotation: exon 20696..20749 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=30 ignored annotation: intron 20750..20992 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[3] ignored annotation: /number=30 ignored annotation: exon 20993..21046 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=31 ignored annotation: intron 21047..21288 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[3] ignored annotation: /number=31 ignored annotation: exon 21289..21333 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=32 ignored annotation: intron 21334..21479 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[3] ignored annotation: /number=32 ignored annotation: exon 21480..21578 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=33 ignored annotation: intron 21579..21812 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[3] ignored annotation: /number=33 ignored annotation: exon 21813..21920 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=34 ignored annotation: intron 21921..22262 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[3] ignored annotation: /number=34 ignored annotation: exon 22263..22316 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=35 ignored annotation: intron 22317..22594 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=35 ignored annotation: exon 22595..22648 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=36 ignored annotation: intron 22649..23024 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=36 ignored annotation: exon 23025..23078 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=37 ignored annotation: intron 23079..23450 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=37 ignored annotation: exon 23451..23504 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=38 ignored annotation: intron 23505..23758 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=38 ignored annotation: exon 23759..23866 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=39 ignored annotation: intron 23867..24357 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=39 ignored annotation: exon 24358..24411 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=40 ignored annotation: intron 24412..24855 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=40 ignored annotation: exon 24856..24909 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=41 ignored annotation: intron 24910..25655 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=41 ignored annotation: exon 25656..25817 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=42 ignored annotation: intron 25818..26014 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=42 ignored annotation: exon 26015..26122 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=43 ignored annotation: intron 26123..26292 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /number=43 ignored annotation: exon 26293..26400 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=44 ignored annotation: intron 26401..26754 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=44 ignored annotation: exon 26755..26808 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=45 ignored annotation: intron 26809..26980 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=45 ignored annotation: exon 26981..27088 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=46 ignored annotation: intron 27089..27253 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=46 ignored annotation: exon 27254..27307 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=47 ignored annotation: intron 27308..27488 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=47 ignored annotation: exon 27489..27596 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=48 ignored annotation: intron 27597..27840 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=48 ignored annotation: exon 27841..27894 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=49 ignored annotation: intron 27895..28337 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=49 ignored annotation: exon 28338..28445 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[2] ignored annotation: /number=50 ignored annotation: intron 28446..28802 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=50 ignored annotation: exon 28803..29091 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=51 ignored annotation: intron 29092..29545 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=51 ignored annotation: exon 29546..29733 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=52 ignored annotation: intron 29734..30076 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=52 ignored annotation: exon 30077..30319 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=53 ignored annotation: intron 30320..30854 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=53 ignored annotation: exon 30855..31001 ignored annotation: /gene="COL2A1" ignored annotation: /note="G00-119-063" ignored annotation: /citation=[1] ignored annotation: /number=54 ignored annotation: BASE COUNT 6451 a 8344 c 8801 g 7405 t // ** orig/raws/HUMCOL2A1Z:1207: missing "mRNA" entry === HUMCOX5B === locus = HUMCOX5B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="2cen-q13" mRNA = 44..146,1023..1096,1297..1396,1949..2144 ignored annotation: /gene="COX5B" ignored annotation: /note="G00-127-530" ignored annotation: gene join(44..146,1023..1096,1297..1396,1949..2061) ignored annotation: /gene="COX5B" CDS = 44..146,1023..1096,1297..1396,1949..2061 ignored annotation: /partial ignored annotation: /gene="COX5B" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-127-530" ignored annotation: /db_xref="PID:g180937" translation = MASRLLRGAGTLAAQALRARGPSGAAAMRSMASGGGVPTDEEQATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGQAQRCPRCGAHYKLVPQQLAH ignored annotation: exon 44..146 ignored annotation: /partial ignored annotation: /gene="COX5B" ignored annotation: /note="G00-127-530" ignored annotation: /number=2 ignored annotation: exon 1023..1096 ignored annotation: /gene="COX5B" ignored annotation: /note="G00-127-530" ignored annotation: /number=3 ignored annotation: exon 1297..1396 ignored annotation: /gene="COX5B" ignored annotation: /note="G00-127-530" ignored annotation: /number=4 ignored annotation: exon 1949..2144 ignored annotation: /gene="COX5B" ignored annotation: /note="G00-127-530" ignored annotation: /number=5 ignored annotation: BASE COUNT 615 a 607 c 685 g 686 t mRNA range 44..146 mRNA range 1023..1096 mRNA range 1297..1396 mRNA range 1949..2144 CDS range 44..146 CDS range 1023..1096 CDS range 1297..1396 CDS range 1949..2061 seq_ini = 1 seq_fin = 2593 i = 2061 last codon bas = ac[tga]gca last codon lab = EF[DEF]YYY === HUMCP21OH === locus = HUMCP21OH ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="6p21.3" ignored annotation: gene 745..946 ignored annotation: /gene="CYP21" CDS = 745..946,1044..1133,1416..1570,1678..1779,1868..1969,2071..2157,2327..2527,2728..2906,2990..3093,3191..3456 ignored annotation: /note="21-hydroxylase B" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g180964" translation = MLLLGLLLLLPLLAGARLLWNWWKLRSLHLPPLAPGFLHLLQPDLPIYLLGLTQKFGPIYRLHLGLQDVVVLNSKRTIEEAMVKKWADFAGRPEPLTYKLVSRNYPDLSLGDYSLLWKAHKKLTRSALLLGIRDSMEPVVEQLTQEFCERMRAQPGTPVAIEEEFSLLTCSIICYLTFGDKIKDDNLMPAYYKCIQEVLKTWSHWSIQIVDVIPFLRFFPNPGLRRLKQAIEKRDHIVEMQLRQHKESLVAGQWRDMMDYMLQGVAQPSMEEGSGQLLEGHVHMAAVDLLIGGTETTANTLSWAVVFLLHHPEIQQRLQEELDHELGPGASSSRVPYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSISGYDIPEGTVIIPNLQGAHLDETVWERPHEFWPDRFLEPGKNSRALAFGCGARVCLGEPLARLELFVVLTRLLQAFTLLPSGDALPSLQPLPHCSVILKMQPFQVRLQPRGMGAHSPGQNQ ignored annotation: exon <745..946 ignored annotation: /gene="CYP21" ignored annotation: /note="21-hydroxylase B; G00-120-605" ignored annotation: /number=1 ignored annotation: intron 947..1043 ignored annotation: /note="CYP21P intron A" ignored annotation: exon 1044..1133 ignored annotation: /number=2 ignored annotation: intron 1134..1415 ignored annotation: /note="CYP21P intron B" ignored annotation: exon 1416..1570 ignored annotation: /number=3 ignored annotation: intron 1571..1677 ignored annotation: /note="CYP21P intron C" ignored annotation: exon 1678..1779 ignored annotation: /number=4 ignored annotation: intron 1780..1867 ignored annotation: /note="CYP21P intron D" ignored annotation: exon 1868..1969 ignored annotation: /number=5 ignored annotation: intron 1970..2070 ignored annotation: /note="CYP21P intron E" ignored annotation: exon 2071..2157 ignored annotation: /number=6 ignored annotation: intron 2158..2326 ignored annotation: /note="CYP21P intron F" ignored annotation: exon 2327..2527 ignored annotation: /number=7 ignored annotation: intron 2528..2727 ignored annotation: /note="CYP21P intron G" ignored annotation: exon 2728..2906 ignored annotation: /number=8 ignored annotation: intron 2907..2989 ignored annotation: /note="CYP21P intron H" ignored annotation: exon 2990..3093 ignored annotation: /number=9 ignored annotation: intron 3094..3190 ignored annotation: /note="CYP21P intron K" ignored annotation: exon 3191..>3456 ignored annotation: /note="21-hydroxylase B" ignored annotation: /number=10 ignored annotation: polyA_signal 3942..3947 ignored annotation: BASE COUNT 779 a 1261 c 1154 g 848 t // ** orig/raws/HUMCP21OH:150: missing "mRNA" entry === HUMCRPGA === locus = HUMCRPGA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="1q21-q23" ignored annotation: gene 230..290 ignored annotation: /gene="CRP" CDS = 230..290,569..1182 ignored annotation: /note="C-reactive protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181068" translation = MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQLWP ignored annotation: exon <230..290 ignored annotation: /gene="CRP" ignored annotation: /note="C-reactive protein; G00-119-071" ignored annotation: /number=1 ignored annotation: intron 291..568 ignored annotation: /note="intron A" ignored annotation: exon 569..>1182 ignored annotation: /note="C-reactive protein" ignored annotation: /number=2 ignored annotation: BASE COUNT 621 a 574 c 620 g 665 t // ** orig/raws/HUMCRPGA:84: missing "mRNA" entry === HUMCRYABA === locus = HUMCRYABA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="11q22.3-q23.1" ignored annotation: TATA_signal 924..930 ignored annotation: prim_transcript 949..>4040 ignored annotation: /note="A-B2-cry mRNA and introns" ignored annotation: exon <999..1199 ignored annotation: /gene="CRYA2" ignored annotation: /note="alpha-B2-crystallin; G00-119-805" ignored annotation: /number=1 ignored annotation: gene 999..1199 ignored annotation: /gene="CRYA2" CDS = 999..1199,2274..2396,3754..3957 ignored annotation: /note="alpha-B2-crystallin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181076" translation = MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK ignored annotation: intron 1200..2273 ignored annotation: /note="A-B2-cry, intron A" ignored annotation: exon 2274..2396 ignored annotation: /number=2 ignored annotation: intron 2397..3753 ignored annotation: /note="A-B2-cry, intron B" ignored annotation: exon 3754..>3957 ignored annotation: /note="alpha-B2-crystallin" ignored annotation: /number=3 ignored annotation: polyA_signal 4075..4080 ignored annotation: BASE COUNT 1028 a 1041 c 985 g 1152 t // ** orig/raws/HUMCRYABA:123: missing "mRNA" entry === HUMCSPA === locus = HUMCSPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="D-SECT2" ignored annotation: /tissue_type="blood" ignored annotation: misc_feature 1..875 ignored annotation: /note="5' flanking region" ignored annotation: TATA_signal 846..849 ignored annotation: /note="TAAA Box" ignored annotation: exon 876..960 ignored annotation: /number=1 mRNA = 876..960,2107..2254,2772..2907,3113..3370,3773..4029 ignored annotation: /product="cytotoxic serine proteinase" ignored annotation: 5'UTR 876..905 CDS = 906..960,2107..2254,2772..2907,3113..3370,3773..3916 ignored annotation: /codon_start=1 ignored annotation: /product="cytotoxic serine proteinase" ignored annotation: /db_xref="PID:g181157" translation = MQPFLLLLAFLLTPGAGTEEIIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGDSGGPLVCKDVAQGILSYGNKKGTPPGVYIKVSHFLPWIKRTMKRL ignored annotation: intron 961..2106 ignored annotation: /number=1 ignored annotation: exon 2107..2254 ignored annotation: /number=2 ignored annotation: intron 2255..2771 ignored annotation: /number=2 ignored annotation: exon 2772..2907 ignored annotation: /number=3 ignored annotation: intron 2908..3112 ignored annotation: /number=3 ignored annotation: exon 3113..3370 ignored annotation: /number=4 ignored annotation: intron 3371..3772 ignored annotation: /number=4 ignored annotation: exon 3773..4029 ignored annotation: /number=5 ignored annotation: 3'UTR 3917..4029 ignored annotation: polyA_signal 4012..4017 ignored annotation: misc_feature 4030..4770 ignored annotation: /note="3' flanking region" ignored annotation: BASE COUNT 1208 a 1328 c 1076 g 1158 t mRNA range 876..960 mRNA range 2107..2254 mRNA range 2772..2907 mRNA range 3113..3370 mRNA range 3773..4029 CDS range 906..960 CDS range 2107..2254 CDS range 2772..2907 CDS range 3113..3370 CDS range 3773..3916 seq_ini = 1 seq_fin = 4770 i = 3916 last codon bas = tc[taa]cag last codon lab = EF[DEF]YYY === HUMCYC1A === locus = HUMCYC1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="8q24" ignored annotation: prim_transcript <1..3801 ignored annotation: /note="cytochrome c-1 mRNA and introns" ignored annotation: gene 1407..1535 ignored annotation: /gene="CYC1" ignored annotation: exon <1407..1535 ignored annotation: /gene="CYC1" ignored annotation: /note="cytochrome c-1; G00-119-827" ignored annotation: /number=1 CDS = 1407..1535,2138..2334,2429..2555,2641..2798,2888..3048,3311..3411,3508..3612 ignored annotation: /note="cytochrome c-1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181240" translation = MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVMLSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRPPK ignored annotation: intron 1536..2137 ignored annotation: /note="cytochrome c-1, intron A" ignored annotation: exon 2138..2334 ignored annotation: /number=2 ignored annotation: intron 2335..2428 ignored annotation: /note="cytochrome c-1, intron B" ignored annotation: exon 2429..2555 ignored annotation: /number=3 ignored annotation: intron 2556..2640 ignored annotation: /note="cytochrome c-1, intron C" ignored annotation: exon 2641..2798 ignored annotation: /number=4 ignored annotation: intron 2799..2887 ignored annotation: /note="cytochrome c-1, intron D" ignored annotation: exon 2888..3048 ignored annotation: /number=5 ignored annotation: intron 3049..3310 ignored annotation: /note="cytochrome c-1, intron E" ignored annotation: exon 3311..3411 ignored annotation: /number=6 ignored annotation: intron 3412..3507 ignored annotation: /note="cytochrome c-1, intron F" ignored annotation: exon 3508..>3612 ignored annotation: /note="cytochrome c-1" ignored annotation: /number=7 ignored annotation: BASE COUNT 862 a 1309 c 1483 g 968 t // ** orig/raws/HUMCYC1A:147: missing "mRNA" entry === HUMCYCAA === locus = HUMCYCAA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 81..2512 ignored annotation: /note="HCS mRNA and introns" ignored annotation: intron 145..1217 ignored annotation: /note="HCS intron A" CDS = 1226..1394,1496..1644 ignored annotation: /note="cytochrome c" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181242" translation = MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE ignored annotation: exon <1226..1394 ignored annotation: /note="cytochrome c, (first expressed exon)" ignored annotation: /number=2 ignored annotation: intron 1395..1495 ignored annotation: /note="HCS intron B" ignored annotation: exon 1496..>1644 ignored annotation: /note="cytochrome c" ignored annotation: /number=3 ignored annotation: BASE COUNT 894 a 534 c 745 g 915 t // ** orig/raws/HUMCYCAA:98: missing "mRNA" entry === HUMCYP2DG === locus = HUMCYP2DG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 689..702 ignored annotation: prim_transcript 726..5103 ignored annotation: /note="debrisoquine 4-hydroxylase mRNA and introns" ignored annotation: exon <814..993 ignored annotation: /note="debrisoquine 4-hydroxylase" ignored annotation: /number=1 CDS = 814..993,1696..1877,2419..2571,2661..2820,3254..3430,3621..3762,3970..4157,4612..4753,4852..5030 ignored annotation: /note="debrisoquine 4-hydroxylase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181306" translation = MGLEALVPLAVIVAIFLLLVDLMHRRQRWAARYSPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREAMVTRGEDTADRPPVPITQILGFGPRSQGKQRGVPGALWARVARAEALLRLHLAQLGPGQEVAGAVGDRGGRLPLCRLRQPLRRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVTPSPYELCAVPR ignored annotation: intron 994..1695 ignored annotation: /note="debrisoquine 4-hydroxylase intron A" ignored annotation: exon 1696..1877 ignored annotation: /number=2 ignored annotation: intron 1878..2418 ignored annotation: /note="debrisoquine 4-hydroxylase intron B" ignored annotation: exon 2419..2571 ignored annotation: /number=3 ignored annotation: intron 2572..2660 ignored annotation: /note="debrisoquine 4-hydroxylase intron C" ignored annotation: exon 2661..2820 ignored annotation: /number=4 ignored annotation: intron 2821..3253 ignored annotation: /note="debrisoquine 4-hydroxylase intron D" ignored annotation: exon 3254..3430 ignored annotation: /number=5 ignored annotation: intron 3431..3620 ignored annotation: /note="debrisoquine 4-hydroxylase intron E" ignored annotation: exon 3621..3762 ignored annotation: /number=6 ignored annotation: intron 3763..3969 ignored annotation: /note="debrisoquine 4-hydroxylase intron F" ignored annotation: exon 3970..4157 ignored annotation: /number=7 ignored annotation: intron 4158..4611 ignored annotation: /note="debrisoquine 4-hydroxylase intron G" ignored annotation: exon 4612..4753 ignored annotation: /number=8 ignored annotation: intron 4754..4851 ignored annotation: /note="debrisoquine 4-hydroxylase intron H" ignored annotation: exon 4852..>5030 ignored annotation: /note="debrisoquine 4-hydroxylase" ignored annotation: /number=9 ignored annotation: BASE COUNT 1066 a 1537 c 1851 g 1049 t // ** orig/raws/HUMCYP2DG:172: missing "mRNA" entry === HUMCYPBB === locus = HUMCYPBB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /clone_lib="Charon 4A" ignored annotation: /tissue_type="blood" ignored annotation: TATA_signal 569..575 ignored annotation: /evidence=experimental ignored annotation: 5'UTR 604..610 ignored annotation: exon 604..849 ignored annotation: /number=1 ignored annotation: gene 611..6466 ignored annotation: /gene="CYP11B2" CDS = 611..849,1237..1392,3201..3400,3538..3741,4028..4182,4995..5161,5561..5639,5719..5916,6353..6466 ignored annotation: /gene="CYP11B2" ignored annotation: /codon_start=1 ignored annotation: /product="steroid 18-hydroxylase" ignored annotation: /db_xref="PID:d1003404" ignored annotation: /db_xref="PID:g975640" translation = MALRAKAEVCVAAPWLSLQRARALGTRAARAPRTVLPFEAMPQHPGNRWLRLLQIWREQGYEHLHLEMHQTFQELGPIFRYNLGGPRMVCVMLPEDVEKLQQVDSLHPCRMILEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRLNPDVLSPKAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLALFGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWISPKVWKEHFEAWDCIFQYGDNCIQKIYQELAFNRPQHYTGIVAELLLKAELSLEAIKANSMELTAGSVDTTAFPLLMTLFELARNPDVQQILRQESLAAAASISEHPQKATTELPLLRAALKETLRLYPVGLFLERVVSSDLVLQNYHIPAGTLVQVFLYSLGRNAALFPRPERYNPQRWLDIRGSGRNFHHVPFGFGMRQCLGRRLAEAEMLLLLHHVLKHFLVETLTQEDIKMVYSFILRPGTSPLLTFRAIN ignored annotation: intron 850..1236 ignored annotation: /gene="CYP11B2" ignored annotation: /number=1 ignored annotation: exon 1237..1392 ignored annotation: /gene="CYP11B2" ignored annotation: /number=2 ignored annotation: intron 1393..3200 ignored annotation: /gene="CYP11B2" ignored annotation: /number=2 ignored annotation: exon 3201..3400 ignored annotation: /gene="CYP11B2" ignored annotation: /number=3 ignored annotation: intron 3401..3537 ignored annotation: /gene="CYP11B2" ignored annotation: /number=3 ignored annotation: exon 3538..3741 ignored annotation: /gene="CYP11B2" ignored annotation: /number=4 ignored annotation: intron 3742..4027 ignored annotation: /gene="CYP11B2" ignored annotation: /number=4 ignored annotation: exon 4028..4182 ignored annotation: /gene="CYP11B2" ignored annotation: /number=5 ignored annotation: intron 4183..4994 ignored annotation: /gene="CYP11B2" ignored annotation: /number=5 ignored annotation: exon 4995..5161 ignored annotation: /gene="CYP11B2" ignored annotation: /number=6 ignored annotation: intron 5162..5560 ignored annotation: /gene="CYP11B2" ignored annotation: /number=6 ignored annotation: exon 5561..5639 ignored annotation: /gene="CYP11B2" ignored annotation: /number=7 ignored annotation: intron 5640..5718 ignored annotation: /gene="CYP11B2" ignored annotation: /number=7 ignored annotation: exon 5719..5916 ignored annotation: /gene="CYP11B2" ignored annotation: /number=8 ignored annotation: intron 5917..6352 ignored annotation: /gene="CYP11B2" ignored annotation: /number=8 ignored annotation: exon 6353..>6910 ignored annotation: /number=9 ignored annotation: 3'UTR 6467..>6910 ignored annotation: BASE COUNT 1372 a 1907 c 2241 g 1390 t // ** orig/raws/HUMCYPBB:246: missing "mRNA" entry === HUMCYPIIE === locus = HUMCYPIIE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="10" ignored annotation: prim_transcript 2789..14198 ignored annotation: /note="CYP2E mRNA and introns" ignored annotation: gene 2825..3001 ignored annotation: /gene="CYP2E" ignored annotation: exon <2825..3001 ignored annotation: /gene="CYP2E" ignored annotation: /note="cytochrome P450IIE1; G00-119-833" ignored annotation: /number=1 CDS = 2825..3001,3907..4066,7006..7155,7545..7705,8113..8289,9172..9313,12151..12338,12838..12979,13864..14048 ignored annotation: /note="cytochrome P450IIE1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181356" translation = MSALGVTVALLVWAAFLLLVSMWRQVHSSWNLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHAHRDRGIIFNNGPTWKDIRRFSLTTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLPGSHRKVIKNVAEVKEYVSERVKEHHQSLDPNCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGCIPPRYKLCVIPRS ignored annotation: intron 3002..3906 ignored annotation: /note="CYP2E intron A" ignored annotation: exon 3907..4066 ignored annotation: /number=2 ignored annotation: intron 4067..7005 ignored annotation: /note="CYP2E intron B" ignored annotation: exon 7006..7155 ignored annotation: /number=3 ignored annotation: intron 7156..7544 ignored annotation: /note="CYP2E intron C" ignored annotation: exon 7545..7705 ignored annotation: /number=4 ignored annotation: intron 7706..8112 ignored annotation: /note="CYP2E intron D" ignored annotation: exon 8113..8289 ignored annotation: /number=5 ignored annotation: intron 8290..9171 ignored annotation: /note="CYP2E intron E" ignored annotation: exon 9172..9313 ignored annotation: /number=6 ignored annotation: intron 9314..12150 ignored annotation: /note="CYP2E intron F" ignored annotation: exon 12151..12338 ignored annotation: /number=7 ignored annotation: intron 12339..12837 ignored annotation: /note="CYP2E intron G" ignored annotation: exon 12838..12979 ignored annotation: /number=8 ignored annotation: intron 12980..13863 ignored annotation: /note="CYP2E intron H" ignored annotation: exon 13864..>14048 ignored annotation: /note="cytochrome P450IIE1" ignored annotation: /number=9 ignored annotation: BASE COUNT 3635 a 3645 c 3772 g 3724 t // ** orig/raws/HUMCYPIIE:334: missing "mRNA" entry === HUMDEF5A === locus = HUMDEF5A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: CAAT_signal 1267..1271 ignored annotation: TATA_signal 1328..1334 mRNA = 1359..1570,2550..2786 ignored annotation: /product="defensin 5" ignored annotation: exon 1359..1570 CDS = 1399..1570,2550..2662 ignored annotation: /codon_start=1 ignored annotation: /product="defensin 5" ignored annotation: /db_xref="PID:g181533" translation = MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAISFAGNGLSALRTSGSQARATCYCRTGRCATRESLSGVCEISGRLYRLCCR ignored annotation: exon 2550..2786 ignored annotation: polyA_signal 2770..2775 ignored annotation: BASE COUNT 879 a 595 c 547 g 859 t mRNA range 1359..1570 mRNA range 2550..2786 CDS range 1399..1570 CDS range 2550..2662 seq_ini = 1 seq_fin = 2880 i = 2662 last codon bas = gc[tga]gct last codon lab = EF[DEF]YYY === HUMDKERB === locus = HUMDKERB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 1007..1011 ignored annotation: exon <1113..1436 ignored annotation: /note="cytokeratin 8" ignored annotation: /number=1 CDS = 1113..1436,3972..4180,4809..4869,5344..5439,5958..6248,7113..7333,7492..7550,8380..8567 ignored annotation: /note="cytokeratin 8" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g181573" translation = MSIRVTQKSYKVSTSGPRAFSSRSYTSGPGSRISSSSFSRVGSSNFRGGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSIHTKTTGGYAGGLSSAYGGSQAGLSYSLGSSFGSGAGSSSFSRTSSSRAVVVKKIETRDGKLVSESSDVLPK ignored annotation: intron 1437..3971 ignored annotation: /note="CK8 intron A" ignored annotation: exon 3972..4180 ignored annotation: /number=2 ignored annotation: intron 4181..4808 ignored annotation: /note="CK8 intron B" ignored annotation: exon 4809..4869 ignored annotation: /number=3 ignored annotation: intron 4870..5343 ignored annotation: /note="CK8 intron C" ignored annotation: exon 5344..5439 ignored annotation: /number=4 ignored annotation: intron 5440..5957 ignored annotation: /note="CK8 intron D" ignored annotation: exon 5958..6248 ignored annotation: /number=5 ignored annotation: intron 6249..7112 ignored annotation: /note="CK8 intron E" ignored annotation: exon 7113..7333 ignored annotation: /number=6 ignored annotation: intron 7334..7491 ignored annotation: /note="CK8 intron F" ignored annotation: exon 7492..7550 ignored annotation: /number=7 ignored annotation: intron 7551..8379 ignored annotation: /note="CK8 intron G" ignored annotation: exon 8380..>8567 ignored annotation: /note="cytokeratin 8" ignored annotation: /number=8 ignored annotation: polyA_signal 8779..8784 ignored annotation: BASE COUNT 1868 a 2324 c 2481 g 2142 t // ** orig/raws/HUMDKERB:216: missing "mRNA" entry === HUMDNL1L === locus = HUMDNL1L ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="14C6" ignored annotation: /clone_lib="Q1Z cosmid library" ignored annotation: /map="Xq28" ignored annotation: exon 925..1085 ignored annotation: /gene="DNL1L" ignored annotation: /number=1 ignored annotation: intron 1086..3777 ignored annotation: /gene="DNL1L" ignored annotation: exon 3778..3862 ignored annotation: /gene="DNL1L" ignored annotation: /number=2 ignored annotation: intron 3863..7316 ignored annotation: /gene="DNL1L" ignored annotation: exon 7317..7538 ignored annotation: /gene="DNL1L" ignored annotation: /number=3 ignored annotation: gene join(7404..7538,7889..7977,8058..8144,9349..9449, ignored annotation: 9590..9702,9781..10029,10130..10264) ignored annotation: /gene="DNL1L" CDS = 7404..7538,7889..7977,8058..8144,9349..9449,9590..9702,9781..10029,10130..10264 ignored annotation: /gene="DNL1L" ignored annotation: /note="lysosomal-like" ignored annotation: /codon_start=1 ignored annotation: /product="DNase I" ignored annotation: /db_xref="PID:g886276" translation = MHYPTALLFLILANGAQAFRICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRELNRFDGSGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYNDEDDVFAREPFVAQFSLPSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYARVVLHGERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQAHSVQPLSLTVLLLLSLLSPQLCPAA ignored annotation: intron 7539..7888 ignored annotation: /gene="DNL1L" ignored annotation: exon 7889..7977 ignored annotation: /gene="DNL1L" ignored annotation: /number=4 ignored annotation: intron 7978..8057 ignored annotation: /gene="DNL1L" ignored annotation: exon 8058..8144 ignored annotation: /gene="DNL1L" ignored annotation: /number=5 ignored annotation: intron 8145..9348 ignored annotation: /gene="DNL1L" ignored annotation: exon 9349..9449 ignored annotation: /gene="DNL1L" ignored annotation: /number=6 ignored annotation: intron 9450..9589 ignored annotation: /gene="DNL1L" ignored annotation: exon 9590..9702 ignored annotation: /gene="DNL1L" ignored annotation: /number=7 ignored annotation: intron 9703..9780 ignored annotation: /gene="DNL1L" ignored annotation: exon 9781..10029 ignored annotation: /gene="DNL1L" ignored annotation: /number=8 ignored annotation: intron 10030..10129 ignored annotation: /gene="DNL1L" ignored annotation: exon 10130..11212 ignored annotation: /gene="DNL1L" ignored annotation: /number=9 ignored annotation: misc_feature <10336..>10532 ignored annotation: /note="insertion/deletion polymorphism" ignored annotation: /evidence=experimental ignored annotation: BASE COUNT 2897 a 3194 c 3345 g 2531 t // ** orig/raws/HUMDNL1L:288: missing "mRNA" entry === HUMDODDA === locus = HUMDODDA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="WI38" ignored annotation: /cell_type="fibroblast" ignored annotation: /tissue_type="lung" ignored annotation: 5'UTR 1..1317 ignored annotation: exon 1..1425 ignored annotation: /number=1 ignored annotation: /product="deoxycytidylate deaminase" CDS = 1318..1425,1828..1963,22267..22383,23741..23837,25392..25470 ignored annotation: /codon_start=1 ignored annotation: /product="deoxycytidylate deaminase" ignored annotation: /db_xref="PID:g886280" translation = MSEVSCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKFIPKCSKIVIDFDSINSRPSQKLQ ignored annotation: intron 1426..1827 ignored annotation: /number=1 ignored annotation: exon 1828..1963 ignored annotation: /number=2 ignored annotation: /product="deoxycytidylate deaminase" ignored annotation: intron 1964..22266 ignored annotation: /number=2 ignored annotation: exon 22267..22383 ignored annotation: /number=3 ignored annotation: /product="deoxycytidylate deaminase" ignored annotation: intron 22384..23740 ignored annotation: /number=3 ignored annotation: exon 23741..23837 ignored annotation: /number=4 ignored annotation: /product="deoxycytidylate deaminase" ignored annotation: intron 23838..25391 ignored annotation: /number=4 ignored annotation: exon 25392..26764 ignored annotation: /number=5 ignored annotation: /product="deoxycytidylate deaminase" ignored annotation: 3'UTR 25468..26764 ignored annotation: BASE COUNT 7079 a 5521 c 6539 g 7625 t // ** orig/raws/HUMDODDA:507: missing "mRNA" entry === HUMDS === locus = HUMDS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="lambda EMBL3" ignored annotation: /tissue_type="peripheral blood cells" ignored annotation: misc_feature 222..227 ignored annotation: /note="GRE: glucocorticoid-responsive element" ignored annotation: misc_feature 321..328 ignored annotation: /note="AP-2: cAMP-receptor-binding site" ignored annotation: CAAT_signal 374..378 ignored annotation: GC_signal complement(723..728) ignored annotation: /note="Sp1-binding site" ignored annotation: exon 748..853 ignored annotation: /number=1 CDS = 791..853,1422..1455,4410..4458,7915..7967,8095..8169,8718..8773,9885..9996,11658..11810,12173..12249,13136..13233,17195..17325,18751..18824,19117..19200,19892..20059,21022..21156 ignored annotation: /codon_start=1 ignored annotation: /product="dihydrolipoamide succinyltransferase" ignored annotation: /db_xref="PID:d1006080" ignored annotation: /db_xref="PID:g643589" translation = MLSRSRCVSRAFSAPLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVVINNSVFSVRFFRTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLADAGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYTDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL ignored annotation: repeat_unit 870..877 ignored annotation: /note="DR-1" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 928..936 ignored annotation: /note="DR-2" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 975..983 ignored annotation: /note="DR-3" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 992..1000 ignored annotation: /note="DR-1" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 1093..1101 ignored annotation: /note="DR-3" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 1151..1159 ignored annotation: /note="DR-2" ignored annotation: /rpt_type=direct ignored annotation: exon 1422..1455 ignored annotation: /number=2 ignored annotation: exon 4410..4458 ignored annotation: /number=3 ignored annotation: exon 7915..7967 ignored annotation: /number=4 ignored annotation: exon 8095..8169 ignored annotation: /number=5 ignored annotation: exon 8718..8773 ignored annotation: /number=6 ignored annotation: exon 9885..9996 ignored annotation: /number=7 ignored annotation: exon 11658..11810 ignored annotation: /number=8 ignored annotation: exon 12173..12249 ignored annotation: /number=9 ignored annotation: exon 13136..13233 ignored annotation: /number=10 ignored annotation: exon 17195..17325 ignored annotation: /number=11 ignored annotation: exon 18751..18824 ignored annotation: /number=12 ignored annotation: exon 19117..19200 ignored annotation: /number=13 ignored annotation: exon 19892..20059 ignored annotation: /number=14 ignored annotation: exon 21022..22573 ignored annotation: /number=15 ignored annotation: polyA_signal 22550..22556 ignored annotation: /note="aattaaa: possible polyadenylation signal" ignored annotation: BASE COUNT 5710 a 4774 c 5431 g 6658 t // ** orig/raws/HUMDS:496: missing "mRNA" entry === HUMEDN1B === locus = HUMEDN1B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="lambda-EMBL3" ignored annotation: /map="6p24-p23" ignored annotation: repeat_region 98..383 ignored annotation: /rpt_family="Alu" ignored annotation: protein_bind 739..745 ignored annotation: /bound_moiety="acute phase reactant regulatory element" ignored annotation: misc_feature 979..1039 ignored annotation: /note="Z-DNA region; putative" ignored annotation: protein_bind 2183..2188 ignored annotation: /bound_moiety="acute phase reactant regulatory element" ignored annotation: protein_bind 2951..2958 ignored annotation: /bound_moiety="TPA/JUN" ignored annotation: protein_bind 3241..3248 ignored annotation: /bound_moiety="TPA/JUN" ignored annotation: protein_bind 3316..3328 ignored annotation: /bound_moiety="NF-1" ignored annotation: protein_bind 3499..3505 ignored annotation: /bound_moiety="TPA/JUN" ignored annotation: CAAT_signal 3510..3515 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: TATA_signal 3577..3582 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: exon 3608..3939 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=1 ignored annotation: gene join(3876..3939,5585..5753,7183..7338,7503..7646, ignored annotation: 9212..9317) ignored annotation: /gene="EDN1" CDS = 3876..3939,5585..5753,7183..7338,7503..7646,9212..9317 ignored annotation: /gene="EDN1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-861" ignored annotation: /product="endothelin-1" ignored annotation: /db_xref="PID:g556203" translation = MDYLLMIFSLLFVACQGAPETAVLGAELSAVGENGGEKPTPSPPWRLRRSKRCSCSSLMDKECVYFCHLDIIWVNTPEHVVPYGLGSPRSKRALENLLPTKATDRENRCQCASQKDKKCWNFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSETMRNSVKSSFHDPKLKGKPSRERYVTHNRAHW ignored annotation: sig_peptide 3876..3938 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: intron 3940..5584 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=1 ignored annotation: protein_bind 4612..4618 ignored annotation: /bound_moiety="acute phase reactant regulatory element" ignored annotation: exon 5585..5753 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=2 ignored annotation: mat_peptide join(5677..5753,7183..7219) ignored annotation: /gene="EDN1" ignored annotation: /note="big form of endothelin-1; G00-119-861" ignored annotation: /product="endothelin-1" ignored annotation: mat_peptide 5677..5739 ignored annotation: /gene="EDN1" ignored annotation: /note="small form of endothelin-1; G00-119-861" ignored annotation: /product="endothelin-1" ignored annotation: intron 5754..7182 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=2 ignored annotation: exon 7183..7338 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=3 ignored annotation: intron 7339..7502 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=3 ignored annotation: exon 7503..7646 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=4 ignored annotation: intron 7647..9211 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=4 ignored annotation: protein_bind 8205..8218 ignored annotation: /bound_moiety="NF-1" ignored annotation: protein_bind 8260..8266 ignored annotation: /bound_moiety="acute phase reactant regulatory element" ignored annotation: exon 9212..10443 ignored annotation: /gene="EDN1" ignored annotation: /note="G00-119-861" ignored annotation: /number=5 ignored annotation: protein_bind 9392..9398 ignored annotation: /bound_moiety="acute phase reactant regulatory element" ignored annotation: protein_bind 10751..10764 ignored annotation: /bound_moiety="NF-1" ignored annotation: BASE COUNT 3372 a 2728 c 2816 g 3544 t 1 others 8761 ataaagtatt tgctctgggc ctactgtatg cttcttttyt ttttctctct tttcaactaa ** orig/raws/HUMEDN1B:264: invalid base letter "y" === HUMEF1A === locus = HUMEF1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Unassigned" ignored annotation: misc_binding 205..214 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 320..328 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 332..340 ignored annotation: /bound_moiety="Sp1" ignored annotation: TATA_signal 546..552 ignored annotation: prim_transcript 576..4087 ignored annotation: /note="EF-1-alpha mRNA and introns" ignored annotation: intron 609..1551 ignored annotation: /note="EF-1-alpha intron A" ignored annotation: misc_binding 983..992 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 1026..1034 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 1122..1131 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 1132..1141 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 1240..1249 ignored annotation: /bound_moiety="Sp1" ignored annotation: misc_binding 1302..1308 ignored annotation: /bound_moiety="Ap1" ignored annotation: exon <1582..1725 ignored annotation: /gene="EEF1A" ignored annotation: /note="elongation factor EF-1-alpha" ignored annotation: /number=2 ignored annotation: gene join(1582..1725,2092..2271,2377..2673,2757..2907, ignored annotation: 2995..3251,3341..3575,3671..3795) ignored annotation: /gene="EEF1A" CDS = 1582..1725,2092..2271,2377..2673,2757..2907,2995..3251,3341..3575,3671..3795 ignored annotation: /gene="EEF1A" ignored annotation: /note="elongation factor EF-1-alpha" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-118-791" ignored annotation: /db_xref="PID:g181963" translation = MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK ignored annotation: intron 1726..2091 ignored annotation: /note="EF-1-alpha intron B" ignored annotation: exon 2092..2271 ignored annotation: /gene="EEF1A" ignored annotation: /number=3 ignored annotation: intron 2272..2376 ignored annotation: /note="EF-1-alpha intron C" ignored annotation: exon 2377..2673 ignored annotation: /gene="EEF1A" ignored annotation: /number=4 ignored annotation: intron 2674..2756 ignored annotation: /note="EF-1-alpha intron D" ignored annotation: exon 2757..2907 ignored annotation: /gene="EEF1A" ignored annotation: /number=5 ignored annotation: intron 2908..2994 ignored annotation: /note="EF-1-alpha intron E" ignored annotation: exon 2995..3251 ignored annotation: /gene="EEF1A" ignored annotation: /number=6 ignored annotation: intron 3252..3340 ignored annotation: /note="EF-1-alpha intron F" ignored annotation: exon 3341..3575 ignored annotation: /gene="EEF1A" ignored annotation: /number=7 ignored annotation: intron 3576..3670 ignored annotation: /note="EF-1-alpha intron G" ignored annotation: exon 3671..>3795 ignored annotation: /gene="EEF1A" ignored annotation: /note="elongation factor EF-1-alpha" ignored annotation: /number=8 ignored annotation: BASE COUNT 1200 a 989 c 1235 g 1271 t // ** orig/raws/HUMEF1A:182: missing "mRNA" entry === HUMEMBPA === locus = HUMEMBPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: CAAT_signal 224..233 ignored annotation: TATA_signal 265..271 ignored annotation: prim_transcript 294..3574 ignored annotation: /note="MBP mRNA and introns" ignored annotation: intron 348..986 ignored annotation: /note="MBP intron A" ignored annotation: misc_signal 994..1001 ignored annotation: /note="eukaryotic initiation signal" ignored annotation: sig_peptide 999..1043 ignored annotation: /note="eosinophil major basic protein signal peptide" ignored annotation: exon <999..1056 ignored annotation: /note="eosinophil major basic protein precursor, (MBP; ignored annotation: first expressed exon)" ignored annotation: /number=2 CDS = 999..1056,1626..1933,2235..2366,3077..3188,3409..3467 ignored annotation: /note="eosinophil major basic protein precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g182080" translation = MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY ignored annotation: intron 1057..1625 ignored annotation: /note="MBP intron B" ignored annotation: exon 1626..1933 ignored annotation: /number=3 ignored annotation: mat_peptide 1883..1933 ignored annotation: /note="eosinophil granule major basic protein" ignored annotation: intron 1934..2234 ignored annotation: /note="MBP intron C" ignored annotation: mat_peptide 2235..2366 ignored annotation: /note="eosinophil granule major basic protein" ignored annotation: exon 2235..2366 ignored annotation: /number=4 ignored annotation: intron 2367..3076 ignored annotation: /note="MBP intron D" ignored annotation: mat_peptide 3077..3188 ignored annotation: /note="eosinophil granule major basic protein" ignored annotation: exon 3077..3188 ignored annotation: /number=5 ignored annotation: intron 3189..3408 ignored annotation: /note="MBP intron E" ignored annotation: mat_peptide 3409..3464 ignored annotation: /note="eosinophil granule major basic protein" ignored annotation: exon 3409..>3467 ignored annotation: /note="eosinophil major basic protein precursor" ignored annotation: /number=6 ignored annotation: polyA_signal 3556..3561 ignored annotation: BASE COUNT 796 a 850 c 1005 g 957 t // ** orig/raws/HUMEMBPA:134: missing "mRNA" entry === HUMEPOHYDD === locus = HUMEPOHYDD ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="fetus" ignored annotation: /tissue_lib="T. Maniatis" ignored annotation: /map="1p11-qter" ignored annotation: exon 2019..2288 ignored annotation: /note="non protein coding exon" ignored annotation: /number=1 ignored annotation: intron 2289..5467 ignored annotation: /number=1 ignored annotation: repeat_unit 2923..3192 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 4810..5086 ignored annotation: /note="Alu Sb subfamily" ignored annotation: /rpt_family="Alu Sb subfamily" ignored annotation: /rpt_type=direct ignored annotation: exon 5468..5655 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=2 ignored annotation: gene join(5473..5655,8515..8695,15392..15619,15955..16084, ignored annotation: 16566..16774,19095..19203,21228..21353,21875..22076) ignored annotation: /gene="EPHX" CDS = 5473..5655,8515..8695,15392..15619,15955..16084,16566..16774,19095..19203,21228..21353,21875..22076 ignored annotation: /gene="EPHX" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-876" ignored annotation: /product="epoxide hydrolase" ignored annotation: /db_xref="PID:g537526" translation = MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEIHDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRHPHFKTKIEGLDIHFIHVKPPQLPAGRTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEVICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVPSHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYMHIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVMLYWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKLISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ ignored annotation: intron 5656..8514 ignored annotation: /note="intron 2" ignored annotation: /number=2 ignored annotation: repeat_unit 6533..6823 ignored annotation: /note="Alu Sq subfamily" ignored annotation: /rpt_family="Alu Sq subfamily" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 7214..7502 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 8010..8295 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=direct ignored annotation: exon 8515..8695 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=3 ignored annotation: intron 8696..15391 ignored annotation: /number=3 ignored annotation: repeat_unit 8996..9264 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 9731..9933 ignored annotation: /note="Alu J family" ignored annotation: /rpt_family="Alu J family" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 10078..10243 ignored annotation: /note="Alu J family" ignored annotation: /rpt_family="Alu J family" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 10255..10539 ignored annotation: /note="Alu Sb subfamily" ignored annotation: /rpt_family="Alu Sb subfamily" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 10558..10842 ignored annotation: /note="Alu Sb subfamily" ignored annotation: /rpt_family="Alu Sb subfamily" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 10872..11151 ignored annotation: /note="Alu Sc subfamily" ignored annotation: /rpt_family="Alu Sc subfamily" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 11974..12129 ignored annotation: /note="Alu J family" ignored annotation: /rpt_family="Alu J family" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 12144..12430 ignored annotation: /note="Alu Sb subfamily" ignored annotation: /rpt_family="Alu Sb subfamily" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 12457..12591 ignored annotation: /note="Alu J family" ignored annotation: /rpt_family="Alu J family" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 13054..13343 ignored annotation: /note="Alu J family" ignored annotation: /rpt_family="Alu J family" ignored annotation: /rpt_type=direct ignored annotation: repeat_unit 14269..14557 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=inverted ignored annotation: exon 15392..15619 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=4 ignored annotation: intron 15620..15954 ignored annotation: /number=4 ignored annotation: exon 15955..16084 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=5 ignored annotation: intron 16085..16565 ignored annotation: /number=5 ignored annotation: repeat_region 16105..16144 ignored annotation: /rpt_family="dinucleotide" ignored annotation: /rpt_unit=gt ignored annotation: exon 16566..16774 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=6 ignored annotation: intron 16775..19094 ignored annotation: /number=6 ignored annotation: repeat_unit 18029..18317 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=inverted ignored annotation: repeat_unit 18347..18636 ignored annotation: /note="Alu Sx subfamily" ignored annotation: /rpt_family="Alu Sx subfamily" ignored annotation: /rpt_type=inverted ignored annotation: exon 19095..19203 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=7 ignored annotation: intron 19204..21227 ignored annotation: /number=7 ignored annotation: exon 21228..21353 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=8 ignored annotation: intron 21354..21874 ignored annotation: /number=8 ignored annotation: exon 21875..22289 ignored annotation: /gene="EPHX" ignored annotation: /note="G00-119-876" ignored annotation: /number=9 ignored annotation: polyA_signal 22272..22276 ignored annotation: polyA_site 22289 ignored annotation: BASE COUNT 6046 a 6179 c 6621 g 5944 t // ** orig/raws/HUMEPOHYDD:593: missing "mRNA" entry === HUMETMAGA === locus = HUMETMAGA ignored annotation: /organism="Homo sapiens" ignored annotation: /note="(vector lambda gtWES)" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="MCF7" ignored annotation: /tissue_type="breast tumor" ignored annotation: /map="1q21-q23" ignored annotation: misc_signal 384..397 ignored annotation: /note="MUC1 ERE" ignored annotation: misc_signal 633..644 ignored annotation: /note="MUC1 CACCT motifs" ignored annotation: TATA_signal 689..692 ignored annotation: /note="MUC1 TATA box" ignored annotation: prim_transcript 777..>2207 ignored annotation: /gene="MUC1" ignored annotation: /note="MUC1 mRNA and introns; G00-120-705" ignored annotation: gene 777..2207 ignored annotation: /gene="MUC1" CDS = 785..842,1342..2207 ignored annotation: /gene="MUC1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-705" ignored annotation: /product="tumor mucin antigen" ignored annotation: /db_xref="PID:g182253" translation = MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAQGVTSAPETRPPPGSTAPPAHGVTSAPDNRPALASTAPPVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPSHHSDTPTTLASHSTKTDASSTHHSTVPPLTSSNHSTSPQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMVSIGLSFPMLP ignored annotation: exon 785..842 ignored annotation: /gene="MUC1" ignored annotation: /note="secreted epithelial tumor mucin antigen precursor, ignored annotation: (MUC1); G00-120-705" ignored annotation: /number=1 ignored annotation: intron 843..1341 ignored annotation: /gene="MUC1" ignored annotation: /note="G00-120-705" ignored annotation: /number=1 ignored annotation: enhancer 1063..1090 ignored annotation: /gene="MUC1" ignored annotation: /note="putative" ignored annotation: misc_difference 1329..1331 ignored annotation: /gene="MUC1" ignored annotation: /citation=[1] ignored annotation: /replace="aaa" ignored annotation: exon 1342..2207 ignored annotation: /gene="MUC1" ignored annotation: /note="secreted epithelial tumor mucin antigen precursor; ignored annotation: G00-120-705" ignored annotation: /number=2 ignored annotation: repeat_unit 1670..1729 ignored annotation: /gene="MUC1" ignored annotation: BASE COUNT 679 a 986 c 981 g 697 t // ** orig/raws/HUMETMAGA:141: missing "mRNA" entry === HUMFABP === locus = HUMFABP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="4q28-q31" ignored annotation: prim_transcript 1028..>4393 ignored annotation: /note="FABPI mRNA (alt.) and introns" ignored annotation: prim_transcript 1053..>4393 ignored annotation: /note="FABPI mRNA (alt.) and introns" ignored annotation: exon <1089..1155 ignored annotation: /gene="FABP2" ignored annotation: /note="fatty acid binding protein; G00-119-127" ignored annotation: /number=1 ignored annotation: gene 1089..1155 ignored annotation: /gene="FABP2" CDS = 1089..1155,2350..2522,3546..3653,4098..4148 ignored annotation: /note="fatty acid binding protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g182352" translation = MAFDSTWKVDRSENYDKFMEKMGVNIVKRKLAAHDNLKLTITQEGNKFTVKESSAFRNIEVVFELGVTFNYNLADGTELRGTWSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRIFKKD ignored annotation: intron 1156..2349 ignored annotation: /note="FABPI intron A" ignored annotation: exon 2350..2522 ignored annotation: /number=2 ignored annotation: intron 2523..3545 ignored annotation: /note="FABPI intron B" ignored annotation: exon 3546..3653 ignored annotation: /number=3 ignored annotation: intron 3654..4097 ignored annotation: /note="FABPI intron C" ignored annotation: exon 4098..>4148 ignored annotation: /note="fatty acid binding protein" ignored annotation: /number=4 ignored annotation: repeat_region 4466..4742 ignored annotation: /note="Alu repeat" ignored annotation: repeat_region 4466..4472 ignored annotation: /note="5' direct repeat" ignored annotation: repeat_region 4736..4742 ignored annotation: /note="3' direct repeat" ignored annotation: BASE COUNT 1770 a 867 c 836 g 1731 t // ** orig/raws/HUMFABP:151: missing "mRNA" entry === HUMFIXG === locus = HUMFIXG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="FIX-lambda-[6,36,53,61]." ignored annotation: /tissue_lib="T.Maniatis et al." ignored annotation: /clone="FIX-lambda-4243" ignored annotation: /cell_line="49,XXXXX" ignored annotation: /cell_type="fibroblast" ignored annotation: /map="Xq26.3-q27.1" ignored annotation: repeat_region 1..2596 ignored annotation: /rpt_family="KpnI" ignored annotation: exon 2966..3082 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=1 ignored annotation: gene 2966..35722 ignored annotation: /gene="F9" ignored annotation: prim_transcript 2966..35722 ignored annotation: /gene="F9" ignored annotation: /note="FIX mRNA" ignored annotation: sig_peptide join(2995..3082,9291..9340) ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" CDS = 2995..3082,9291..9454,9643..9667,13357..13470,20634..20762,23328..23530,33004..33118,33787..34334 ignored annotation: /gene="F9" ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-900" ignored annotation: /product="factor IX" ignored annotation: /db_xref="PID:g182613" translation = MQRVNMIMAESPGLITICLLGYLLSAECTVFLDHENANKILNRPKRYNSGKLEEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWKQYVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELDVTCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLTRAEAVFPDVDYVNSTEAETILDNITQSTQSFNDFTRVVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT ignored annotation: intron 3083..9290 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=1 ignored annotation: repeat_region 7298..7593 ignored annotation: /rpt_family="Alu" ignored annotation: allele 8469..8520 ignored annotation: /gene="F9" ignored annotation: /note="t...50 bp...a in FIX-lambda-4243; ta in ignored annotation: FIX-lambda-[36,61]; G00-119-900" ignored annotation: /citation=[1] ignored annotation: /replace="ta" ignored annotation: exon 9291..9454 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=2 ignored annotation: mat_peptide join(9341..9454,9643..9667,13357..13470,20634..20762, ignored annotation: 23328..23380) ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /product="factor IX light chain" ignored annotation: intron 9455..9642 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=2 ignored annotation: exon 9643..9667 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=3 ignored annotation: intron 9668..13356 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=3 ignored annotation: allele 10041 ignored annotation: /gene="F9" ignored annotation: /note="g in one allele; c in another allele (loss of XmnI ignored annotation: recognition pattern); G00-119-900" ignored annotation: /replace="c" ignored annotation: exon 13357..13470 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=4 ignored annotation: intron 13471..20633 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=4 ignored annotation: allele 14076..14079 ignored annotation: /gene="F9" ignored annotation: /note="tcga in one allele; nnnn in another allele (loss of ignored annotation: TaqI site); G00-119-900" ignored annotation: /replace="nnnn" ignored annotation: repeat_region 18165..20265 ignored annotation: /rpt_family="KpnI" ignored annotation: variation 20416 ignored annotation: /gene="F9" ignored annotation: /citation=[4] ignored annotation: /replace="a" ignored annotation: exon 20634..20762 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=5 ignored annotation: intron 20763..23327 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=5 ignored annotation: exon 23328..23530 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=6 ignored annotation: mutation 23387 ignored annotation: /gene="F9" ignored annotation: /note="g in [1]; a in [3] Ala->Thr; G00-119-900" ignored annotation: /replace="a" ignored annotation: allele 23387 ignored annotation: /gene="F9" ignored annotation: /note="g in one allele; a in another allele" ignored annotation: /replace="a" ignored annotation: mat_peptide join(23486..23530,33004..33118,33787..34331) ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /product="factor IX heavy chain" ignored annotation: intron 23531..33003 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=6 ignored annotation: mutation 23531 ignored annotation: /gene="F9" ignored annotation: /note="g in [1]; t in [2] (haemophilia patient); ignored annotation: G00-119-900" ignored annotation: /replace="t" ignored annotation: repeat_region 24172..24475 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 25863..26091 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 31537..31809 ignored annotation: /rpt_family="Alu" ignored annotation: exon 33004..33118 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=7 ignored annotation: intron 33119..33786 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=7 ignored annotation: exon 33787..35722 ignored annotation: /gene="F9" ignored annotation: /note="G00-119-900" ignored annotation: /number=8 ignored annotation: repeat_region 35948..36262 ignored annotation: /rpt_family="Alu" ignored annotation: BASE COUNT 12326 a 7397 c 7441 g 10895 t // ** orig/raws/HUMFIXG:839: missing "mRNA" entry === HUMG0S19A === locus = HUMG0S19A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 1298..1304 ignored annotation: /note="CK-2 element" ignored annotation: misc_feature 1326..1335 ignored annotation: /note="serum-response element (put.); putative" ignored annotation: misc_feature 1481..1488 ignored annotation: /note="AP1-binding element (put.); putative" ignored annotation: misc_feature 1710..1717 ignored annotation: /note="AP1-binding element (put.); putative" ignored annotation: TATA_signal 1967..1972 ignored annotation: prim_transcript 1998..3880 ignored annotation: /note="G0S19-1 mRNA and introns" CDS = 2081..2153,2842..2956,3377..3467 ignored annotation: /note="G0S19-1 peptide precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g182847" translation = MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA ignored annotation: sig_peptide 2081..2140 ignored annotation: /note="G0S19-1 peptide signal peptide (put.); putative" ignored annotation: exon <2081..2153 ignored annotation: /note="G0S19-1 peptide precursor" ignored annotation: /number=1 ignored annotation: mat_peptide 2141..2153 ignored annotation: /note="G0S19-1 peptide" ignored annotation: intron 2154..2841 ignored annotation: /note="G0S19-1, intron A" ignored annotation: mat_peptide 2842..2956 ignored annotation: /note="G0S19-1 peptide" ignored annotation: exon 2842..2956 ignored annotation: /number=2 ignored annotation: intron 2957..3376 ignored annotation: /note="G0S19-1, intron B" ignored annotation: exon 3377..>3467 ignored annotation: /note="G0S19-1 peptide precursor" ignored annotation: /number=3 ignored annotation: mat_peptide 3377..3464 ignored annotation: /note="G0S19-1 peptide" ignored annotation: BASE COUNT 1143 a 945 c 903 g 1111 t // ** orig/raws/HUMG0S19A:136: missing "mRNA" entry === HUMG0S24B === locus = HUMG0S24B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="19q13.1" ignored annotation: exon 549..630 ignored annotation: /gene="GOS24" ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: gene join(607..630,1441..2397) ignored annotation: /gene="GOS24" CDS = 607..630,1441..2397 ignored annotation: /gene="GOS24" ignored annotation: /codon_start=1 ignored annotation: /product="zinc finger transcriptional regulator" ignored annotation: /db_xref="PID:g183445" translation = MDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE ignored annotation: exon 1441..3103 ignored annotation: /gene="GOS24" ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: misc_feature 2978..2986 ignored annotation: /note="TA-rich conserved element (TARCE)" ignored annotation: misc_feature 3163..3168 ignored annotation: /note="U-rich RNA polymerase II termination element" ignored annotation: misc_feature 3198..3889 ignored annotation: /note="CpG island" ignored annotation: BASE COUNT 648 a 1304 c 1078 g 850 t 9 others 3661 ttgcagattt ctggccaccc gggaccctgg agcccgggaa ttaccgggtc ttggnatttc ** orig/raws/HUMG0S24B:133: invalid base letter "n" === HUMG0S8PP === locus = HUMG0S8PP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: repeat_region <179..348 ignored annotation: /note="J-type" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 1825..2994 ignored annotation: /standard_name="CpG island" ignored annotation: repeat_region 2055..2083 ignored annotation: /rpt_family="Alu" ignored annotation: protein_bind 2167..2175 ignored annotation: /bound_moiety="Zif268" ignored annotation: CAAT_signal 2450..2454 ignored annotation: protein_bind 2490..2499 ignored annotation: /bound_moiety="Sp1" ignored annotation: TATA_signal 2512..2516 ignored annotation: exon 2540..2681 ignored annotation: /number=1 ignored annotation: gene join(2572..2681,3666..3767,3870..3931,4479..4645, ignored annotation: 4898..5092) ignored annotation: /gene="G0S8" CDS = 2572..2681,3666..3767,3870..3931,4479..4645,4898..5092 ignored annotation: /gene="G0S8" ignored annotation: /note="G0/G1 switch regulatory gene # 8" ignored annotation: /codon_start=1 ignored annotation: /product="helix-loop-helix phosphoprotein" ignored annotation: /db_xref="PID:g292037" translation = MQSAMFLAVQHDCRPMDKSAGSGHKSEEKREKMKRTLLKDWKTRLSYFLQNSSTPGKPKTGKKSKQQAFIKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKKPQITTEPHAT ignored annotation: intron 2682..3665 ignored annotation: /number=1 ignored annotation: exon 3666..3767 ignored annotation: /gene="G0S8" ignored annotation: /number=2 ignored annotation: intron 3768..3869 ignored annotation: /number=2 ignored annotation: exon 3870..3931 ignored annotation: /gene="G0S8" ignored annotation: /number=3 ignored annotation: intron 3932..4478 ignored annotation: /number=3 ignored annotation: exon 4479..4645 ignored annotation: /gene="G0S8" ignored annotation: /number=4 ignored annotation: repeat_region 4558..4666 ignored annotation: /rpt_family="LINE 1" ignored annotation: intron 4646..4897 ignored annotation: /number=4 ignored annotation: exon 4898..5769 ignored annotation: /number=5 ignored annotation: repeat_region 6000..6040 ignored annotation: /rpt_family="MER6" ignored annotation: protein_bind 6047..6056 ignored annotation: /standard_name="serum response element" ignored annotation: /bound_moiety="serum" ignored annotation: BASE COUNT 2171 a 1597 c 1479 g 2098 t // ** orig/raws/HUMG0S8PP:204: missing "mRNA" entry === HUMGAD45A === locus = HUMGAD45A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="WI38" ignored annotation: /cell_type="fibroblast" ignored annotation: /tissue_type="lung" ignored annotation: /tissue_lib="Stratagene cat 944201" ignored annotation: /map="1p31.1-31.2" ignored annotation: exon 225..2595 ignored annotation: misc_signal 2158..2165 ignored annotation: /note="octamer transcription binding site" ignored annotation: misc_signal 2185..2192 ignored annotation: /note="octamer transcription binding site" ignored annotation: 5'UTR 2257..2551 CDS = 2552..2595,3082..3183,3407..3644,4718..4831 ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g403128" translation = MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER ignored annotation: intron 2596..3081 ignored annotation: exon 3082..3183 ignored annotation: intron 3184..3406 ignored annotation: exon 3407..3644 ignored annotation: intron 3645..4717 ignored annotation: misc_signal 3832..3851 ignored annotation: /note="p53 binding site" ignored annotation: misc_signal 3881..3887 ignored annotation: /note="AP1 binding site" ignored annotation: exon 4718..>5378 ignored annotation: 3'UTR 4829..>5378 ignored annotation: BASE COUNT 1381 a 1247 c 1375 g 1375 t // ** orig/raws/HUMGAD45A:142: missing "mRNA" entry === HUMGALK1A === locus = HUMGALK1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 419..646,1533..1722,2182..2301,2472..2607,2735..2916,7024..7174,7251..7413,7496..7686 ignored annotation: /gene="GALK1" ignored annotation: /product="galactokinase" ignored annotation: gene 419..7686 ignored annotation: /gene="GALK1" ignored annotation: exon 419..646 ignored annotation: /gene="GALK1" ignored annotation: /number=1 CDS = 482..646,1533..1722,2182..2301,2472..2607,2735..2916,7024..7174,7251..7413,7496..7567 ignored annotation: /gene="GALK1" ignored annotation: /codon_start=1 ignored annotation: /product="galactokinase" ignored annotation: /db_xref="PID:g1929895" translation = MAALRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQAADGAKVLCL ignored annotation: intron 647..1532 ignored annotation: /gene="GALK1" ignored annotation: /number=1 ignored annotation: exon 1533..1722 ignored annotation: /gene="GALK1" ignored annotation: /number=2 ignored annotation: intron 1723..2181 ignored annotation: /gene="GALK1" ignored annotation: /number=2 ignored annotation: exon 2182..2301 ignored annotation: /gene="GALK1" ignored annotation: /number=3 ignored annotation: intron 2302..2471 ignored annotation: /gene="GALK1" ignored annotation: /number=3 ignored annotation: exon 2472..2607 ignored annotation: /gene="GALK1" ignored annotation: /number=4 ignored annotation: intron 2608..2734 ignored annotation: /gene="GALK1" ignored annotation: /number=4 ignored annotation: exon 2735..2916 ignored annotation: /gene="GALK1" ignored annotation: /number=5 ignored annotation: intron 2917..7023 ignored annotation: /gene="GALK1" ignored annotation: /number=5 ignored annotation: exon 7024..7174 ignored annotation: /gene="GALK1" ignored annotation: /number=6 ignored annotation: intron 7175..7250 ignored annotation: /gene="GALK1" ignored annotation: /number=6 ignored annotation: exon 7251..7413 ignored annotation: /gene="GALK1" ignored annotation: /number=6 ignored annotation: intron 7414..7495 ignored annotation: /gene="GALK1" ignored annotation: /number=7 ignored annotation: exon 7496..7686 ignored annotation: /gene="GALK1" ignored annotation: /number=8 ignored annotation: BASE COUNT 1515 a 2450 c 2246 g 1884 t mRNA range 419..646 mRNA range 1533..1722 mRNA range 2182..2301 mRNA range 2472..2607 mRNA range 2735..2916 mRNA range 7024..7174 mRNA range 7251..7413 mRNA range 7496..7686 CDS range 482..646 CDS range 1533..1722 CDS range 2182..2301 CDS range 2472..2607 CDS range 2735..2916 CDS range 7024..7174 CDS range 7251..7413 CDS range 7496..7567 seq_ini = 1 seq_fin = 8095 i = 7567 last codon bas = tg[tga]ggc last codon lab = EF[DEF]YYY === HUMGALT54X === locus = HUMGALT54X ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="9p13" ignored annotation: exon <1..103 ignored annotation: /gene="GALT" ignored annotation: /note="G00-119-971" ignored annotation: /number=1 ignored annotation: primer_bind complement(1..21) ignored annotation: /gene="GALT" ignored annotation: gene 1..621 ignored annotation: /gene="GALT" CDS = 22..103,412..491 ignored annotation: /gene="GALT" ignored annotation: /note="mutation results in premature stop." ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-971" ignored annotation: /product="galactose-1-phosphate uridyl transferase" ignored annotation: /db_xref="PID:g1066753" translation = MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPW ignored annotation: intron 104..411 ignored annotation: /gene="GALT" ignored annotation: /note="G00-119-971" ignored annotation: /number=1 ignored annotation: exon 412..581 ignored annotation: /gene="GALT" ignored annotation: /note="G00-119-971" ignored annotation: /number=2 ignored annotation: mutation 489 ignored annotation: /gene="GALT" ignored annotation: /note="c (Gln) in wt/t (stop) in mutant; G00-119-971" ignored annotation: intron 582..>621 ignored annotation: /gene="GALT" ignored annotation: /note="G00-119-971" ignored annotation: /number=2 ignored annotation: primer_bind 601..621 ignored annotation: /gene="GALT" ignored annotation: BASE COUNT 121 a 199 c 203 g 98 t // ** orig/raws/HUMGALT54X:67: missing "mRNA" entry === HUMGAPDHG === locus = HUMGAPDHG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="12p13" ignored annotation: misc_signal 650..729 ignored annotation: /note="insulin response element A [2]" ignored annotation: misc_signal 729..867 ignored annotation: /note="insulin response element B [2]" ignored annotation: old_sequence 877..879 ignored annotation: /citation=[1] ignored annotation: CAAT_signal 884..892 ignored annotation: misc_signal 1049..1071 ignored annotation: /note="insulin response element A [2]" ignored annotation: TATA_signal 1108..1113 ignored annotation: prim_transcript 1138..4993 ignored annotation: /note="GAPDH mRNA and introns" ignored annotation: intron 1190..1429 ignored annotation: /note="GAPDH intron A" ignored annotation: misc_feature 1447..1456 ignored annotation: /note="Kozak consensus sequence; putative" ignored annotation: gene join(1453..1481,3116..3215,3306..3412,3542..3632, ignored annotation: 3723..3838,3931..4012,4206..4618,4723..4792) ignored annotation: /gene="GAPD" CDS = 1453..1481,3116..3215,3306..3412,3542..3632,3723..3838,3931..4012,4206..4618,4723..4792 ignored annotation: /gene="GAPD" ignored annotation: /note="glyceraldehyde-3-phosphate dehydrogenase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-249" ignored annotation: /db_xref="PID:g182981" translation = MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE ignored annotation: exon <1453..1481 ignored annotation: /gene="GAPD" ignored annotation: /note="glyceraldehyde-3-phosphate dehydrogenase, (first ignored annotation: expressed exon) (EC 1.2.2.12)" ignored annotation: /number=2 ignored annotation: intron 1482..3115 ignored annotation: /note="GAPDH intron B" ignored annotation: exon 3116..3215 ignored annotation: /gene="GAPD" ignored annotation: intron 3216..3305 ignored annotation: /note="GAPDH intron C" ignored annotation: exon 3306..3412 ignored annotation: /gene="GAPD" ignored annotation: /number=4 ignored annotation: intron 3413..3541 ignored annotation: /note="GAPDH intron D" ignored annotation: exon 3542..3632 ignored annotation: /gene="GAPD" ignored annotation: /number=5 ignored annotation: intron 3633..3722 ignored annotation: /note="GAPDH intron E" ignored annotation: exon 3723..3838 ignored annotation: /gene="GAPD" ignored annotation: /number=6 ignored annotation: intron 3839..3930 ignored annotation: /note="GAPDH intron F" ignored annotation: exon 3931..4012 ignored annotation: /gene="GAPD" ignored annotation: /number=7 ignored annotation: intron 4013..4205 ignored annotation: /note="GAPDH intron G" ignored annotation: exon 4206..4618 ignored annotation: /gene="GAPD" ignored annotation: /number=8 ignored annotation: intron 4619..4722 ignored annotation: /note="GAPDH intron H" ignored annotation: exon 4723..>4792 ignored annotation: /gene="GAPD" ignored annotation: /note="glyceraldehyde-3-phosphate dehydrogenase" ignored annotation: /number=9 ignored annotation: BASE COUNT 994 a 1642 c 1627 g 1115 t // ** orig/raws/HUMGAPDHG:195: missing "mRNA" entry === HUMGARE === locus = HUMGARE ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /tissue_lib="EMBL-3 SP6/T7" ignored annotation: /map="11p15.4" ignored annotation: repeat_region 225..272 CDS = 659..809,1987..2238,2403..2652,2960..3117,3325..3857 ignored annotation: /codon_start=1 ignored annotation: /product="gastrin receptor" ignored annotation: /db_xref="PID:g406076" translation = MELLKLNRSVQGTGPGPGASLCRPGAPLLNSSSVGNLSCEPPRIRGAGTRELELAIRITLYAVIFLMSVGGNMLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVACMPFTLLPNLMGTFIFGTVICKAVSYLMGVSVSVSTLSLVAIALERYSAICRPLQARVWQTRSHAARVIVATWLLSGLLMVPYPVYTVVQPVGPRVLQCVHRWPSARVRQTWSVLLLLLLFFIPGVVMAVAYGLISRELYLGLRFDGDSDSDSQSRVRNQGGLPGAVHQNGRCRPETGAVGEDSDGCYVQLPRSRPALELTALTAPGPGSGSRPTQAKLLAKKRVVRMLLVIVVLFFLCWLPVYSANTWRAFDGPGAHRALSGAPISFIHLLSYASACVNPLVYCFMHRRFRQACLETCARCCPRPPRARPRALPDEDPPTPSIASLSRLSYTTISTLGPG ignored annotation: exon 659..809 ignored annotation: /number=1 ignored annotation: intron 810..1986 ignored annotation: /number=1 ignored annotation: exon 1987..2238 ignored annotation: /number=2 ignored annotation: intron 2239..2402 ignored annotation: /number=2 ignored annotation: exon 2403..2652 ignored annotation: /number=3 ignored annotation: intron 2653..2959 ignored annotation: /number=3 ignored annotation: exon 2960..3117 ignored annotation: /number=4 ignored annotation: intron 3118..3857 ignored annotation: /number=4 ignored annotation: exon 3325..3857 ignored annotation: /number=5 ignored annotation: polyA_signal 4416..4421 ignored annotation: BASE COUNT 1065 a 1263 c 1332 g 1094 t // ** orig/raws/HUMGARE:138: missing "mRNA" entry === HUMGASTA === locus = HUMGASTA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="17q" ignored annotation: repeat_region 377..707 ignored annotation: /note="Alu-1 repeat" ignored annotation: repeat_region 991..1326 ignored annotation: /note="Alu-2 repeat" ignored annotation: repeat_region 2074..2390 ignored annotation: /note="Alu-3 repeat" ignored annotation: prim_transcript 3183..6821 ignored annotation: /note="gast mRNA (alt.)" ignored annotation: prim_transcript 3186..6821 ignored annotation: /note="gast mRNA (alt.)" ignored annotation: prim_transcript 3188..6821 ignored annotation: /note="gast mRNA (alt.)" ignored annotation: intron 3243..6283 ignored annotation: /note="gast mRNA intron A" ignored annotation: repeat_region 3775..4071 ignored annotation: /note="Alu-4 repeat" ignored annotation: repeat_region 4251..4585 ignored annotation: /note="Alu-5 repeat" ignored annotation: repeat_region 5014..5328 ignored annotation: /note="Alu-6 repeat" ignored annotation: repeat_region 5343..5643 ignored annotation: /note="Alu-7 repeat" ignored annotation: repeat_region 5861..6184 ignored annotation: /note="Alu-8 repeat" ignored annotation: exon <6289..6499 ignored annotation: /gene="GAS" ignored annotation: /note="gastrin, (first expressed exon); G00-119-261" ignored annotation: /number=2 ignored annotation: gene 6289..6499 ignored annotation: /gene="GAS" CDS = 6289..6499,6630..6724 ignored annotation: /note="gastrin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g182991" translation = MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN ignored annotation: intron 6500..6629 ignored annotation: /note="gast cds intron B" ignored annotation: exon 6630..>6724 ignored annotation: /note="gastrin" ignored annotation: /number=3 ignored annotation: repeat_region 7005..7349 ignored annotation: /note="Alu-9 repeat" ignored annotation: BASE COUNT 1964 a 2036 c 1844 g 1895 t // ** orig/raws/HUMGASTA:200: missing "mRNA" entry === HUMGCAPB === locus = HUMGCAPB ignored annotation: /organism="Homo sapiens" ignored annotation: /note="vector: lambda FIXII" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /tissue_type="retina" ignored annotation: /map="6p21.1" ignored annotation: exon 1..612 ignored annotation: /gene="GCAP" ignored annotation: /number=1 ignored annotation: gene join(412..612,2293..2442,2813..2906,3254..3414) ignored annotation: /gene="GCAP" CDS = 412..612,2293..2442,2813..2906,3254..3414 ignored annotation: /gene="GCAP" ignored annotation: /codon_start=1 ignored annotation: /function="calcium-binding protein" ignored annotation: /product="guanylate cyclase activating protein" ignored annotation: /db_xref="PID:g623405" translation = MGNVMEGKSVEELSSTECHQWYKKFMTECPSGQLTLYEFRQFFGLKNLSPSASQYVEQMFETFDFNKDGYIDFMEYVAGLSLVLKGKVEQKLRWYFKLYDVDGNGCIDRDELLTIIQAIRAINPCSDTTMTAEEFTDTVFSKIDVNGDGELSLEEFIEGVQKDQMLLDTLTRSLDLTRIVRRLQNGEQDEEGADEAAEAAG ignored annotation: intron 613..2292 ignored annotation: /gene="GCAP" ignored annotation: /number=1 ignored annotation: exon 2293..2442 ignored annotation: /gene="GCAP" ignored annotation: /number=2 ignored annotation: intron 2443..2812 ignored annotation: /gene="GCAP" ignored annotation: /number=2 ignored annotation: exon 2813..2906 ignored annotation: /gene="GCAP" ignored annotation: /number=3 ignored annotation: intron 2907..3253 ignored annotation: /gene="GCAP" ignored annotation: /number=3 ignored annotation: exon 3254..4053 ignored annotation: /gene="GCAP" ignored annotation: /number=4 ignored annotation: polyA_signal 4036..4041 ignored annotation: /gene="GCAP" ignored annotation: BASE COUNT 845 a 1085 c 1065 g 951 t 107 others 1201 ctnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ** orig/raws/HUMGCAPB:85: invalid base letter "n" === HUMGFP40H === locus = HUMGFP40H ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="CESS" ignored annotation: /tissue_lib="lambda-H40.3a1." ignored annotation: protein_bind 370..376 ignored annotation: /bound_moiety="AP-2" ignored annotation: protein_bind 624..629 ignored annotation: /bound_moiety="IRF-1" ignored annotation: protein_bind 627..633 ignored annotation: /bound_moiety="AP-1" ignored annotation: TATA_signal 742..747 ignored annotation: exon <796..909 ignored annotation: /note="P40 T-cell and mast cell growth factor precursor" ignored annotation: /number=1 ignored annotation: sig_peptide 796..849 ignored annotation: /note="P40 T-cell and mast cell growth factor signal ignored annotation: peptide" CDS = 796..909,1022..1057,1140..1172,2461..2592,4096..4215 ignored annotation: /note="P40 T-cell and mast cell growth factor precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g183126" translation = MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQEDPASKCHCSANVTSCLCLGIPSDNCTRPCFSERLSQMTNTTMQTRYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGNALTFLKSLLEIFQKEKMRGMRGKI ignored annotation: mat_peptide join(850..909,1022..1057,1140..1172,2461..2592,4096..4212) ignored annotation: /note="P40 T-cell and mast cell growth factor" ignored annotation: /product="growth factor" ignored annotation: intron 910..1021 ignored annotation: /note="hP40 intron A" ignored annotation: exon 1022..1057 ignored annotation: /number=2 ignored annotation: intron 1058..1139 ignored annotation: /note="hP40 intron B" ignored annotation: exon 1140..1172 ignored annotation: /number=3 ignored annotation: intron 1173..2460 ignored annotation: /note="hP40 intron C" ignored annotation: exon 2461..2592 ignored annotation: /number=4 ignored annotation: intron 2593..4095 ignored annotation: /note="hP40 intron D" ignored annotation: repeat_region 2965..3265 ignored annotation: /note="Alu repeat" ignored annotation: exon 4096..>4215 ignored annotation: /note="P40 T-cell and mast cell growth factor precursor" ignored annotation: /number=5 ignored annotation: polyA_signal 4354..4359 ignored annotation: BASE COUNT 1208 a 921 c 904 g 1346 t // ** orig/raws/HUMGFP40H:145: missing "mRNA" entry === HUMGLUT4B === locus = HUMGLUT4B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="Fetal" ignored annotation: /germline ignored annotation: /tissue_type="Liver" ignored annotation: /map="17p13" ignored annotation: repeat_region 6..308 ignored annotation: /rpt_family="Alu repeat 1" ignored annotation: exon 2033..2257 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=1 ignored annotation: /label=exon_1 mRNA = 2033..2257,3535..3651,3763..3935,4028..4152,4276..4379,4507..4669,4775..4962,5125..5229,5378..5479,5995..6198,6716..8402 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /product="glucose transporter" ignored annotation: gene join(2033..2257,3535..3651,3763..3935,4028..4152, ignored annotation: 4276..4379,4507..4669,4775..4962,5125..5229,5378..5479, ignored annotation: 5995..6198,6716..8402) ignored annotation: /gene="GLUT4" CDS = 2225..2257,3535..3651,3763..3935,4028..4152,4276..4379,4507..4669,4775..4962,5125..5229,5378..5479,5995..6198,6716..6919 ignored annotation: /gene="GLUT4" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-997" ignored annotation: /product="glucose transporter" ignored annotation: /db_xref="PID:g183296" translation = MPSGFQQIGSEDGEPPQQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNETWLGRQGPEGPSSIPPGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLVNNVLAVLGGSLMGLANAAASYEMLILGRFLIGAYSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILIAQVLGLESLLGTASLWPLLLGLTVLPALLQLVLLPFCPESPRYLYIIQNLEGPARKSLKRLTGWADVSGVLAELKDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFETAGVGQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTSNFIIGMGFQYVAEAMGPYVFLLFAVLLLGFFIFTFLRVPETRGRTFDQISAAFHRTPSLLEQEVKPSTELEYLGPDEND ignored annotation: intron 2258..3534 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=1 ignored annotation: exon 3535..3651 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=2 ignored annotation: intron 3652..3762 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=2 ignored annotation: exon 3763..3935 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=3 ignored annotation: intron 3936..4027 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=3 ignored annotation: /label=exon_1 ignored annotation: exon 4028..4152 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: intron 4153..4275 ignored annotation: /gene="GLUT4" ignored annotation: /note="intron 4a; G00-119-997" ignored annotation: exon 4276..4379 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: intron 4380..4506 ignored annotation: /gene="GLUT4" ignored annotation: /note="intron 4b; G00-119-997" ignored annotation: exon 4507..4669 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=5 ignored annotation: intron 4670..4774 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=5 ignored annotation: exon 4775..4962 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=6 ignored annotation: intron 4963..5124 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=6 ignored annotation: exon 5125..5229 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=7 ignored annotation: intron 5230..5377 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=7 ignored annotation: exon 5378..5479 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=8 ignored annotation: intron 5480..5994 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=8 ignored annotation: exon 5995..6198 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=9 ignored annotation: intron 6199..6715 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=9 ignored annotation: exon 6716..8402 ignored annotation: /gene="GLUT4" ignored annotation: /note="G00-119-997" ignored annotation: /number=10 ignored annotation: repeat_region 7407..7725 ignored annotation: /rpt_family="Alu repeat 2" ignored annotation: BASE COUNT 1655 a 2461 c 2411 g 1875 t mRNA range 2033..2257 mRNA range 3535..3651 mRNA range 3763..3935 mRNA range 4028..4152 mRNA range 4276..4379 mRNA range 4507..4669 mRNA range 4775..4962 mRNA range 5125..5229 mRNA range 5378..5479 mRNA range 5995..6198 mRNA range 6716..8402 CDS range 2225..2257 CDS range 3535..3651 CDS range 3763..3935 CDS range 4028..4152 CDS range 4276..4379 CDS range 4507..4669 CDS range 4775..4962 CDS range 5125..5229 CDS range 5378..5479 CDS range 5995..6198 CDS range 6716..6919 seq_ini = 1 seq_fin = 8402 i = 6919 last codon bas = ac[tga]ggg last codon lab = EF[DEF]YYY === HUMGRP78 === locus = HUMGRP78 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="9q" ignored annotation: prim_transcript 372..>5470 ignored annotation: /note="GRP78 mRNA and introns" ignored annotation: sig_peptide 593..646 ignored annotation: /gene="GRP78" ignored annotation: /note="GRP78 signal peptide" ignored annotation: exon <593..714 ignored annotation: /gene="GRP78" ignored annotation: /note="GRP78 precursor; G00-119-285" ignored annotation: /number=1 ignored annotation: gene 593..714 ignored annotation: /gene="GRP78" CDS = 593..714,805..1036,1402..1539,2175..2287,2377..2764,2878..3115,3401..3568,4536..5098 ignored annotation: /partial ignored annotation: /note="GRP78 precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386758" translation = MKLSLVAAMLLLLSAARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLHVCPLTLGIETVGGVMTKLIPSNTVVPTKNSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAGPPPTGEEDTAEKDEL ignored annotation: mat_peptide 647..714 ignored annotation: /gene="GRP78" ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: intron 715..804 ignored annotation: /note="GRP78 intron A" ignored annotation: exon 805..1036 ignored annotation: /number=2 ignored annotation: mat_peptide 805..1036 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: intron 1037..1401 ignored annotation: /note="GRP78 intron B" ignored annotation: mat_peptide 1402..1539 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: exon 1402..1539 ignored annotation: /number=3 ignored annotation: intron 1540..2174 ignored annotation: /note="GRP78 intron C" ignored annotation: mat_peptide 2175..2287 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: exon 2175..2287 ignored annotation: /number=4 ignored annotation: intron 2288..2376 ignored annotation: /note="GRP78 intron D" ignored annotation: mat_peptide 2377..2764 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: exon 2377..2764 ignored annotation: /number=5 ignored annotation: intron 2765..2877 ignored annotation: /note="GRP78 intron E" ignored annotation: mat_peptide 2878..3115 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: exon 2878..3115 ignored annotation: /number=6 ignored annotation: intron 3116..3400 ignored annotation: /note="GRP78 intron F" ignored annotation: mat_peptide 3401..3568 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: exon 3401..3568 ignored annotation: /number=7 ignored annotation: intron 3569..4535 ignored annotation: /note="GRP78 intron G" ignored annotation: exon 4536..>5098 ignored annotation: /note="GRP78 precursor" ignored annotation: /number=8 ignored annotation: mat_peptide 4536..5098 ignored annotation: /note="78 kdalton glucose-regulated protein" ignored annotation: BASE COUNT 1496 a 1140 c 1343 g 1491 t // ** orig/raws/HUMGRP78:193: missing "mRNA" entry === HUMGSTM4A === locus = HUMGSTM4A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_lib="lambda FIX" ignored annotation: /map="1p13.3" ignored annotation: exon 478..776 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=1 ignored annotation: gene join(741..776,1063..1138,1566..1630,1942..2023,2124..2224, ignored annotation: 3166..3261,3352..3462,5515..5604) ignored annotation: /gene="GSTM4" CDS = 741..776,1063..1138,1566..1630,1942..2023,2124..2224,3166..3261,3352..3462,5515..5604 ignored annotation: /gene="GSTM4" ignored annotation: /EC_number="2.5.1.18" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-221-589" ignored annotation: /product="glutathione transferase M4" ignored annotation: /db_xref="PID:g306817" translation = MSMTLGYWDIRGLAHAMRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGAHKITQSNAILCYIARKHNLCGETEEEKIRVDILENQAMDVSNQLARVCYSPDFEKLKPEYLEELPTMMQHFSQFLGKRPWFVGDKITFVDFLAYDVLDLHRIFEPNCLDAFPNLKDFISRFEGLEKISAYMKSSRFLPKPLYTRVAVWGNK ignored annotation: intron 777..1062 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=1 ignored annotation: exon 1063..1138 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=2 ignored annotation: intron 1139..1565 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=2 ignored annotation: exon 1566..1630 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=3 ignored annotation: intron 1631..1941 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=3 ignored annotation: exon 1942..2023 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=4 ignored annotation: intron 2024..2123 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=4 ignored annotation: exon 2124..2224 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=5 ignored annotation: intron 2225..3165 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=5 ignored annotation: exon 3166..3261 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=6 ignored annotation: intron 3262..3351 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=6 ignored annotation: exon 3352..3462 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=7 ignored annotation: intron 3463..5514 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=7 ignored annotation: exon 5515..6049 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /number=8 ignored annotation: polyA_signal 6031..6038 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: polyA_site 6049 ignored annotation: /gene="GSTM4" ignored annotation: /note="G00-221-589" ignored annotation: /citation=[1] ignored annotation: BASE COUNT 1247 a 1607 c 1690 g 1538 t // ** orig/raws/HUMGSTM4A:218: missing "mRNA" entry === HUMHA2WC === locus = HUMHA2WC ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="12" ignored annotation: TATA_signal 545..551 ignored annotation: exon 574..1027 ignored annotation: /number=1 CDS = 668..1027,1095..1259,1327..1407,1465..1674 ignored annotation: /codon_start=1 ignored annotation: /product="human aquaporin-2 water channel" ignored annotation: /db_xref="PID:d1007204" ignored annotation: /db_xref="PID:g567250" translation = MWELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAILGSLLYNYVLFPPAKSLSERLAVLKGLEPDTDWEEREVRRRQSVELHSPQSLPRGTKA ignored annotation: intron 1028..1094 ignored annotation: /number=1 ignored annotation: exon 1095..1259 ignored annotation: /number=2 ignored annotation: intron 1260..1326 ignored annotation: /number=2 ignored annotation: exon 1327..1407 ignored annotation: /number=3 ignored annotation: intron 1408..1464 ignored annotation: /number=3 ignored annotation: exon 1465..>2226 ignored annotation: /number=4 ignored annotation: polyA_signal 2221..2226 ignored annotation: BASE COUNT 412 a 686 c 666 g 462 t // ** orig/raws/HUMHA2WC:94: missing "mRNA" entry === HUMHBA1 === locus = HUMHBA1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="16p13.3" ignored annotation: prim_transcript 770..2439 ignored annotation: /note="hbz mRNA [2]" ignored annotation: exon <825..919 ignored annotation: /gene="HBZ" ignored annotation: /note="zeta globin; G00-119-302" ignored annotation: /number=1 CDS = 825..919,1761..1965,2205..2333 ignored annotation: /partial ignored annotation: /gene="HBZ" ignored annotation: /note="zeta globin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386763" translation = MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR ignored annotation: intron 920..1760 ignored annotation: /gene="HBZ" ignored annotation: /note="hbz intron 1" ignored annotation: repeat_region 979..992 ignored annotation: /note="repeat sequence, copy 1" ignored annotation: exon 1761..1965 ignored annotation: /gene="HBZ" ignored annotation: /number=2 ignored annotation: intron 1966..2204 ignored annotation: /gene="HBZ" ignored annotation: /note="hbz intron 2" ignored annotation: repeat_region 1971..1975 ignored annotation: /note="repeat sequence copy 1" ignored annotation: exon 2205..>2333 ignored annotation: /gene="HBZ" ignored annotation: /note="zeta globin" ignored annotation: /number=3 ignored annotation: polyA_signal 2419..2424 ignored annotation: /gene="HBZ" ignored annotation: /note="hbz mRNA polyadenylation signal [2]" ignored annotation: BASE COUNT 495 a 774 c 966 g 450 t // ** orig/raws/HUMHBA1:130: missing "mRNA" entry === HUMHCF2 === locus = HUMHCF2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="22q11.2" ignored annotation: exon 1750..1796 ignored annotation: /gene="HCF2" ignored annotation: /note="G00-120-038" ignored annotation: /number=1 ignored annotation: /product="heparin cofactor II" ignored annotation: gene join(1750..1796,6948..7852,11623..11896,13654..13798, ignored annotation: 14527..15372) ignored annotation: /gene="HCF2" mRNA = 1750..1796,6948..7852,11623..11896,13654..13798,14527..15372 ignored annotation: /gene="HCF2" ignored annotation: /note="G00-120-038" ignored annotation: /product="heparin cofactor II" ignored annotation: exon 6948..7852 ignored annotation: /gene="HCF2" ignored annotation: /note="G00-120-038" ignored annotation: /number=2 ignored annotation: /product="heparin cofactor II" CDS = 6964..7852,11623..11896,13654..13798,14527..14718 ignored annotation: /gene="HCF2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-038" ignored annotation: /product="heparin cofactor II" ignored annotation: /db_xref="PID:g183908" translation = MKHSLNALLIFLIITSAWGGSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDYLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVERWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKHQGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS ignored annotation: exon 11623..11896 ignored annotation: /gene="HCF2" ignored annotation: /note="G00-120-038" ignored annotation: /number=3 ignored annotation: /product="heparin cofactor II" ignored annotation: exon 13654..13798 ignored annotation: /gene="HCF2" ignored annotation: /note="G00-120-038" ignored annotation: /number=4 ignored annotation: /product="heparin cofactor II" ignored annotation: exon 14527..15372 ignored annotation: /gene="HCF2" ignored annotation: /note="G00-120-038" ignored annotation: /number=5 ignored annotation: /product="heparin cofactor II" ignored annotation: BASE COUNT 4477 a 3814 c 3642 g 3916 t mRNA range 1750..1796 mRNA range 6948..7852 mRNA range 11623..11896 mRNA range 13654..13798 mRNA range 14527..15372 CDS range 6964..7852 CDS range 11623..11896 CDS range 13654..13798 CDS range 14527..14718 seq_ini = 1 seq_fin = 15849 i = 14718 last codon bas = cc[tag]agg last codon lab = EF[DEF]YYY === HUMHIAPPA === locus = HUMHIAPPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 555..>7160 ignored annotation: /note="islet amyloid polypeptide (hIAPP) mRNA and introns" ignored annotation: intron 659..988 ignored annotation: /note="islet amyloid polypeptide intron A" ignored annotation: gene 1004..1083 ignored annotation: /gene="Iapp" CDS = 1004..1083,5892..6081 ignored annotation: /partial ignored annotation: /note="islet amyloid polypeptide (hIAPP)" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386771" translation = MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTYGKRNAVEVLKREPLNYLPL ignored annotation: exon <1004..1083 ignored annotation: /gene="Iapp" ignored annotation: /note="islet amyloid polypeptide (hIAPP), (first ignored annotation: translated exon)" ignored annotation: /number=2 ignored annotation: intron 1084..5891 ignored annotation: /note="islet amyloid polypeptide intron B" ignored annotation: repeat_region 2457..2773 ignored annotation: /note="Alu repeat element" ignored annotation: exon 5892..>6081 ignored annotation: /note="islet amyloid polypeptide (hIAPP)" ignored annotation: /number=3 ignored annotation: repeat_region 6450..6740 ignored annotation: /note="Alu repeat element" ignored annotation: BASE COUNT 2300 a 1199 c 1183 g 2478 t // ** orig/raws/HUMHIAPPA:172: missing "mRNA" entry === HUMHIS102 === locus = HUMHIS102 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 1375..1432 ignored annotation: /gene="HIS1" ignored annotation: /number=1 ignored annotation: intron 1433..3999 ignored annotation: /gene="HIS1" ignored annotation: /number=1 ignored annotation: exon 4000..4063 ignored annotation: /gene="HIS1" ignored annotation: /number=2 CDS = 4013..4063,5258..5278,5357..5386,6434..6505 ignored annotation: /gene="HIS1" ignored annotation: /codon_start=1 ignored annotation: /product="histatin 1" ignored annotation: /db_xref="PID:g184054" translation = MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN ignored annotation: sig_peptide join(4013..4063,5258..5263) ignored annotation: /gene="HIS1" ignored annotation: intron 4064..5257 ignored annotation: /gene="HIS1" ignored annotation: /number=2 ignored annotation: exon 5258..5278 ignored annotation: /gene="HIS1" ignored annotation: /number=3 ignored annotation: mat_peptide join(5264..5278,5357..5386,6434..6502) ignored annotation: /gene="HIS1" ignored annotation: /product="histatin 1" ignored annotation: intron 5279..5356 ignored annotation: /gene="HIS1" ignored annotation: /number=3 ignored annotation: exon 5357..5386 ignored annotation: /gene="HIS1" ignored annotation: /number=4 ignored annotation: intron 5387..6433 ignored annotation: /gene="HIS1" ignored annotation: /number=4 ignored annotation: exon 6434..6538 ignored annotation: /gene="HIS1" ignored annotation: /number=5 ignored annotation: BASE COUNT 2427 a 1285 c 1184 g 2651 t 3 others 121 gttttaancc ccacatgcat tagctatttg ccctgatgct ctccctccct nncccaccac ** orig/raws/HUMHIS102:65: invalid base letter "n" === HUMHLL4G === locus = HUMHLL4G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /dev_stage="adult" mRNA = 192..267,1540..1619,3037..3208,4157..>4331 ignored annotation: /gene="hll4" ignored annotation: /product="14 kDa beta-galactoside-binding lectin" ignored annotation: gene 192..4331 ignored annotation: /gene="hll4" ignored annotation: exon 192..267 ignored annotation: /partial ignored annotation: /gene="hll4" ignored annotation: /number=1 ignored annotation: /product="14 kDa beta-galactoside-binding lectin" CDS = 259..267,1540..1619,3037..3208,4157..4303 ignored annotation: /gene="hll4" ignored annotation: /codon_start=1 ignored annotation: /product="14 kDa beta-galactoside-binding lectin" ignored annotation: /db_xref="PID:g184228" translation = MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD ignored annotation: exon 1540..1619 ignored annotation: /gene="hll4" ignored annotation: /number=2 ignored annotation: /product="14 kDa beta-galactoside-binding lectin" ignored annotation: repeat_unit 2338..2638 ignored annotation: /gene="hll4" ignored annotation: /rpt_family="Alu" ignored annotation: exon 3037..3208 ignored annotation: /gene="hll4" ignored annotation: /number=3 ignored annotation: /product="14 kDa beta-galactoside-binding lectin" ignored annotation: repeat_unit 3402..3705 ignored annotation: /gene="hll4" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_unit 3706..3988 ignored annotation: /gene="hll4" ignored annotation: /rpt_family="Alu" ignored annotation: exon 4157..>4331 ignored annotation: /gene="hll4" ignored annotation: /number=4 ignored annotation: /product="14 kDa beta-galactoside-binding lectin" ignored annotation: polyA_signal 4326..4331 ignored annotation: /gene="hll4" ignored annotation: BASE COUNT 951 a 1266 c 1251 g 960 t mRNA range 192..267 mRNA range 1540..1619 mRNA range 3037..3208 mRNA range 4157..4331 CDS range 259..267 CDS range 1540..1619 CDS range 3037..3208 CDS range 4157..4303 seq_ini = 1 seq_fin = 4428 i = 4303 last codon bas = ac[tga]aat last codon lab = EF[DEF]YYY === HUMHMG14A === locus = HUMHMG14A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="21q22.3" ignored annotation: prim_transcript 851..7654 ignored annotation: /note="HMG-14 mRNA and introns" ignored annotation: exon <1054..1068 ignored annotation: /gene="HMG14" ignored annotation: /note="high mobility group protein 14, (first expressed ignored annotation: exon); G00-118-809" ignored annotation: /number=1 ignored annotation: gene 1054..1068 ignored annotation: /gene="HMG14" CDS = 1054..1068,1391..1423,1517..1546,1629..1676,4693..4821,6819..6866 ignored annotation: /partial ignored annotation: /note="high mobility group protein 14" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386779" translation = MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD ignored annotation: intron 1069..1390 ignored annotation: /note="HMG-14 intron A" ignored annotation: exon 1391..1423 ignored annotation: /number=2 ignored annotation: intron 1424..1516 ignored annotation: /note="HMG-14 intron B" ignored annotation: exon 1517..1546 ignored annotation: /number=3 ignored annotation: intron 1547..1628 ignored annotation: /note="HMG-14 intron C" ignored annotation: exon 1629..1676 ignored annotation: /number=4 ignored annotation: intron 1677..4692 ignored annotation: /note="HMG-14 intron D" ignored annotation: exon 4693..4821 ignored annotation: /number=5 ignored annotation: intron 4822..6818 ignored annotation: /note="HMG-14 intron E" ignored annotation: exon 6819..>6866 ignored annotation: /note="high mobility group protein 14" ignored annotation: /number=6 ignored annotation: BASE COUNT 2393 a 1714 c 2094 g 2681 t // ** orig/raws/HUMHMG14A:215: missing "mRNA" entry === HUMHMG2A === locus = HUMHMG2A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="blood" mRNA = 952..1048,1649..1818,2104..2249,2323..2497,3080..3616 ignored annotation: /gene="HMG-2" ignored annotation: /product="high mobility group 2 protein" ignored annotation: exon 952..1048 ignored annotation: /gene="HMG-2" ignored annotation: /number=1 ignored annotation: gene join(952..1048,1649..1818,2104..2249,2323..2497, ignored annotation: 3080..3616) ignored annotation: /gene="HMG-2" ignored annotation: intron 1049..1648 ignored annotation: /gene="HMG-2" ignored annotation: /note="does not fit consensus" ignored annotation: /number=1 ignored annotation: exon 1649..1818 ignored annotation: /gene="HMG-2" ignored annotation: /number=2 CDS = 1669..1818,2104..2249,2323..2497,3080..3238 ignored annotation: /gene="HMG-2" ignored annotation: /codon_start=1 ignored annotation: /product="high mobility group 2 protein" ignored annotation: /db_xref="PID:g184236" translation = MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE ignored annotation: intron 1819..2103 ignored annotation: /gene="HMG-2" ignored annotation: /number=2 ignored annotation: exon 2104..2249 ignored annotation: /gene="HMG-2" ignored annotation: /number=3 ignored annotation: intron 2250..2322 ignored annotation: /gene="HMG-2" ignored annotation: /number=3 ignored annotation: exon 2323..2497 ignored annotation: /gene="HMG-2" ignored annotation: /number=4 ignored annotation: intron 2498..3079 ignored annotation: /gene="HMG-2" ignored annotation: /number=4 ignored annotation: exon 3080..3616 ignored annotation: /gene="HMG-2" ignored annotation: /number=5 ignored annotation: BASE COUNT 1103 a 940 c 1172 g 1126 t mRNA range 952..1048 mRNA range 1649..1818 mRNA range 2104..2249 mRNA range 2323..2497 mRNA range 3080..3616 CDS range 1669..1818 CDS range 2104..2249 CDS range 2323..2497 CDS range 3080..3238 seq_ini = 1 seq_fin = 4341 i = 3238 last codon bas = aa[taa]atg last codon lab = EF[DEF]YYY === HUMHMGIY === locus = HUMHMGIY ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /sex="male" ignored annotation: /tissue_type="placenta" mRNA = 629..719,911..1074,1373..1547,3037..3136,4481..4659,6460..6543,7219..7269,8581..9977 ignored annotation: /gene="HMG-I(Y)" ignored annotation: /note="transcription initiation site for 10A/1A/8A cDNAs" ignored annotation: gene 629..9977 ignored annotation: /gene="HMG-I(Y)" ignored annotation: exon 629..719 ignored annotation: /gene="HMG-I(Y)" ignored annotation: /number=1 ignored annotation: intron 720..910 ignored annotation: /gene="HMG-I(Y)" ignored annotation: /number=1 mRNA join(911..1074,1373..1547,3037..3136,4481..4659, ** orig/raws/HUMHMGIY:37: more than one "mRNA" entry === HUMHOX13G === locus = HUMHOX13G ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_lib="lambda EMBL 3" ignored annotation: gene join(249..810,1771..2021) ignored annotation: /gene="HOX 1.3" ignored annotation: exon <249..810 ignored annotation: /gene="HOX 1.3" ignored annotation: /number=1 CDS = 249..810,1771..2021 ignored annotation: /gene="HOX 1.3" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g387668" translation = MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDTHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP ignored annotation: intron 811..1770 ignored annotation: /gene="HOX 1.3" ignored annotation: /number=1 ignored annotation: exon 1771..>2786 ignored annotation: /gene="HOX 1.3" ignored annotation: /number=2 ignored annotation: polyA_signal 2781..2786 ignored annotation: /gene="HOX 1.3" ignored annotation: BASE COUNT 740 a 799 c 830 g 709 t 1 others 3061 acaaaaanga gagaagagc ** orig/raws/HUMHOX13G:97: invalid base letter "n" === HUMHOX4A === locus = HUMHOX4A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="AKIBA" ignored annotation: /clone_lib="AKIBA genomic cosmid" ignored annotation: /tissue_type="peripheral lymphocytes" ignored annotation: gene 1408..4518 ignored annotation: /gene="HOX 4A" ignored annotation: exon <1408..1900 ignored annotation: /gene="HOX 4A" ignored annotation: /number=1 CDS = 1408..1900,3761..4518 ignored annotation: /gene="HOX 4A" ignored annotation: /codon_start=1 ignored annotation: /product="homeodomain protein" ignored annotation: /db_xref="PID:d1002368" ignored annotation: /db_xref="PID:g219880" translation = MQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPCSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL ignored annotation: exon 3761..>4518 ignored annotation: /gene="HOX 4A" ignored annotation: /number=2 ignored annotation: polyA_signal 5321..5326 ignored annotation: polyA_signal 5692..5697 ignored annotation: BASE COUNT 1427 a 1535 c 1468 g 1404 t // ** orig/raws/HUMHOX4A:164: missing "mRNA" entry === HUMHPARS1 === locus = HUMHPARS1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="5'Hp[1SB,rB] and Hp2E" ignored annotation: /haplotype="genotype Hp-2/Hp-1S" ignored annotation: /map="16q22.1" ignored annotation: sig_peptide join(1041..1045,2549..2597) ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" CDS = 1041..1045,2549..2631,2918..3019,3780..3854,4642..4743,5502..5576,6500..7278 ignored annotation: /gene="HP" ignored annotation: /note="alpha-2 allele, precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-314" ignored annotation: /product="haptoglobin" ignored annotation: /db_xref="PID:g386783" translation = MSALGAVIALLLWGQLFAVDSGNDVTDIADDGCPKPPEIAHGYVEHSVRYQCKNYYKLRTEGDGVYTLNDKKQWINKAVGDKLPECEADDGCPKPPEIAHGYVEHSVRYQCKNYYKLRTEGDGVYTLNNEKQWINKAVGDKLPECEAVCGKPKNPANPVQRILGGHLDAKGSFPWQAKMVSHHNLTTGATLINEQWLLTTAKNLFLNHSENATAKDIAPTLTLYVGKKQLVEIEKVVLHPNYSQVDIGLIKLKQKVSVNERVMPICLPSKDYAEVGRVGYVSGWGRNANFKFTDHLKYVMLPVADQDQCIRHYEGSTVPEKKTPKSPVGVQPILNEHTFCAGMSKYQEDTCYGDAGSAFAVHDLEEDTWYATGILSFDKSCAVAEYGVYVKVTSIQDWVQKTIAEN ignored annotation: gene 1041..7278 ignored annotation: /gene="HP" ignored annotation: exon <1041..1045 ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" ignored annotation: /number=1 ignored annotation: intron 1046..2548 ignored annotation: /gene="HP" ignored annotation: /note="Hp intron A" ignored annotation: repeat_region 1526..1534 ignored annotation: /note="5' terminal repeat of Alu repeat copy A" ignored annotation: repeat_region 1526..1833 ignored annotation: /note="Alu repeat copy A" ignored annotation: repeat_region 1825..1833 ignored annotation: /note="3' terminal repeat of Alu repeat copy A" ignored annotation: exon 2549..2631 ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" ignored annotation: /number=2 ignored annotation: mat_peptide join(2598..2631,2918..3019,3780..3854,4642..4743, ignored annotation: 5502..5576,6500..6537) ignored annotation: /gene="HP" ignored annotation: /note="alpha chain A2 allele; G00-119-314" ignored annotation: /product="haptoglobin" ignored annotation: intron 2632..2917 ignored annotation: /gene="HP" ignored annotation: /note="Hp intron B" ignored annotation: exon 2918..3019 ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" ignored annotation: /number=3 ignored annotation: intron 3020..3779 ignored annotation: /gene="HP" ignored annotation: /note="Hp intron C" ignored annotation: exon 3780..3854 ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" ignored annotation: /number=4 ignored annotation: intron 3855..4641 ignored annotation: /gene="HP" ignored annotation: /note="Hp intron D" ignored annotation: exon 4642..4743 ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" ignored annotation: /number=5 ignored annotation: intron 4744..5501 ignored annotation: /gene="HP" ignored annotation: /note="Hp intron E" ignored annotation: exon 5502..5576 ignored annotation: /gene="HP" ignored annotation: /note="G00-119-314" ignored annotation: /number=6 ignored annotation: intron 5577..6499 ignored annotation: /gene="HP" ignored annotation: /note="Hp intron F" ignored annotation: exon 6500..>7278 ignored annotation: /gene="HP" ignored annotation: /note="prehaptoglobin" ignored annotation: /number=7 ignored annotation: mat_peptide 6541..7275 ignored annotation: /gene="HP" ignored annotation: /note="beta-chain; G00-119-314" ignored annotation: /product="haptoglobin" ignored annotation: repeat_region 9119..9424 ignored annotation: /note="Alu repeat copy B" ignored annotation: exon <9644..9648 ignored annotation: /gene="HPR" ignored annotation: /note="G00-119-316; putative; does not fit consensus" ignored annotation: /number=1 ignored annotation: intron 9649..>11551 ignored annotation: /gene="HPR" ignored annotation: /note="Hpr intron A" ignored annotation: repeat_region 10131..10435 ignored annotation: /note="Alu repeat copy C" ignored annotation: repeat_region 10131..10139 ignored annotation: /note="5' terminal repeat of Alu repeat copy C" ignored annotation: repeat_region 10427..10435 ignored annotation: /note="3' terminal repeat of Alu repeat copy C" ignored annotation: repeat_region 10652..10656 ignored annotation: /note="5' insertion target sequence for retrovirus-like ignored annotation: element" ignored annotation: LTR 10657..11166 ignored annotation: /gene="HPR" ignored annotation: /note="retrovirus-like element 5' LTR" ignored annotation: BASE COUNT 3020 a 2679 c 2652 g 3200 t // ** orig/raws/HUMHPARS1:337: missing "mRNA" entry === HUMHPRTB === locus = HUMHPRTB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Xq26.1" ignored annotation: repeat_region complement(41..258) ignored annotation: /note="Alu repeat copy A" ignored annotation: repeat_region 261..321 ignored annotation: /note="short interspersed repeat copy A" ignored annotation: repeat_region complement(694..1012) ignored annotation: /note="Alu repeat copy B" ignored annotation: repeat_region 1013..1054 ignored annotation: /note="short interspersed repeat copy B" ignored annotation: mutation 1664..1678 ignored annotation: /note="ggccggctccgttat in wt; gt in gout RJK 951 [23]" ignored annotation: gene 1677..1703 ignored annotation: /gene="HPRT" ignored annotation: exon <1677..1703 ignored annotation: /gene="HPRT" ignored annotation: /note="hypoxanthine phosphoribosyltransferase" ignored annotation: /number=1 CDS = 1677..1703,14780..14886,16603..16786,27892..27957,31618..31635,34938..35020,39816..39862,40034..40110,41455..41502 ignored annotation: /note="hypoxanthine phosphoribosyltransferase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g184370" translation = MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA ignored annotation: intron 1704..14779 ignored annotation: /note="HPRT intron A" ignored annotation: repeat_region complement(2869..2902) ignored annotation: /note="short interspersed repeat copy C" ignored annotation: repeat_region 3078..3107 ignored annotation: /note="short interspersed repeat copy D" ignored annotation: repeat_region complement(3342..3532) ignored annotation: /note="Alu repeat copy C" ignored annotation: repeat_region complement(3343..3982) ignored annotation: /note="Alu repeat copy D" ignored annotation: repeat_region 4228..4254 ignored annotation: /note="short interspersed repeat copy E" ignored annotation: repeat_region 4463..4494 ignored annotation: /note="short interspersed repeat copy F" ignored annotation: repeat_region complement(5937..6232) ignored annotation: /note="Alu repeat copy E" ignored annotation: repeat_region complement(6288..6524) ignored annotation: /note="Alu repeat copy F" ignored annotation: repeat_region 7504..7807 ignored annotation: /note="Alu repeat copy G" ignored annotation: repeat_region complement(8408..8713) ignored annotation: /note="Alu repeat copy H" ignored annotation: repeat_region complement(9169..9477) ignored annotation: /note="Alu repeat copy I" ignored annotation: repeat_region 9699..10142 ignored annotation: /note="Alu repeat copy J" ignored annotation: repeat_region complement(10293..10407) ignored annotation: /note="Alu repeat copy K" ignored annotation: repeat_region complement(11254..11312) ignored annotation: /note="LINE repeat copy A (partial)" ignored annotation: repeat_region 12154..12310 ignored annotation: /note="Alu repeat copy L" ignored annotation: repeat_region complement(12998..13302) ignored annotation: /note="Alu repeat copy M" ignored annotation: repeat_region complement(13314..13638) ignored annotation: /note="Alu repeat copy N" ignored annotation: repeat_region complement(13923..14238) ignored annotation: /note="Alu repeat copy O" ignored annotation: repeat_region complement(14239..14610) ignored annotation: /note="Alu repeat copy P" ignored annotation: mutation 14778 ignored annotation: /note="a in wt; t in Lesch-Nyhan RJK 1760, no [25]" ignored annotation: exon 14780..14886 ignored annotation: /number=2 ignored annotation: mutation 14808..14809 ignored annotation: /note="tt in wt; ttt in Lesch-Nyhan Chicago [19]" ignored annotation: mutation 14874 ignored annotation: /note="t in wt; c in Lesch-Nyhan Detroit Leu->Pro [19]" ignored annotation: mutation 14877..14879 ignored annotation: /note="tta in wt; ta in Lesch-Nyhan RJK 1939 [25]" ignored annotation: mutation 14886 ignored annotation: /note="g in wt; a in Lesch-Nyhan RJK 2163 Arg->Lys [25]" ignored annotation: intron 14887..16602 ignored annotation: /note="HPRT intron B" ignored annotation: repeat_region complement(15843..16090) ignored annotation: /note="Alu repeat copy Q" ignored annotation: repeat_region complement(16293..16518) ignored annotation: /note="Alu repeat copy R" ignored annotation: exon 16603..16786 ignored annotation: /number=3 ignored annotation: mutation 16619 ignored annotation: /note="c in wt; g in gout Toronto Arg->Gly [2]" ignored annotation: mutation 16623..16664 ignored annotation: /note="atgtgatgaaggagatgggaggccatcacattgtagccctct in wt; ignored annotation: at in Lesch-Nyhan RJK 2108 [25]" ignored annotation: mutation 16675..16676 ignored annotation: /note="ag in wt; agg in Lesch-Nyhan RJK 866 [23]" ignored annotation: mutation 16676 ignored annotation: /note="g in wt; a in Lesch-Nyhan, HPRT-Utrecht: Gly->Arg" ignored annotation: /citation=[25] ignored annotation: mutation 16677 ignored annotation: /note="g in wt; a in Lesch-Nyhan New Haven Gly->Glu [19]" ignored annotation: mutation 16679 ignored annotation: /note="g in wt; c in Lesch-Nyhan Yale Gly->Arg [20]" ignored annotation: mutation 16680 ignored annotation: /note="g in wt; t in partial HPRT deficiency, HPRT-Madrid: ignored annotation: Gly->Val" ignored annotation: /citation=[25] ignored annotation: mutation 16690 ignored annotation: /note="c in wt; a in Lesch-Nyhan Flint RJK 892 Phe->Leu ignored annotation: [Gene 68, 85-91 (1988)] [23]" ignored annotation: mutation 16707 ignored annotation: /note="a in wt; t in gout Arlingen Asp->Val [19]" ignored annotation: mutation 16756..16759 ignored annotation: /note="tgta in wt; ta in Lesch-Nyhan RJK 1332 [23]" ignored annotation: mutation 16780 ignored annotation: /note="c in wt; a in gout Munich Ser->Arg [13] [6]" ignored annotation: mutation 16784..16787 ignored annotation: /note="tgtg in wt; tg in Lesch-Nyhan RJK 1747 [25]" ignored annotation: intron 16787..27890 ignored annotation: /note="HPRT intron C" ignored annotation: unsure 17479 ignored annotation: /note="polymorphism or cloning error" ignored annotation: repeat_region complement(18242..18284) ignored annotation: /note="LINE repeat copy B (partial)" ignored annotation: repeat_region complement(18439..18783) ignored annotation: /note="Alu repeat copy S" ignored annotation: repeat_region 18962..19084 ignored annotation: /note="Alu repeat copy T" ignored annotation: repeat_region complement(19104..19397) ignored annotation: /note="Alu repeat copy U" ignored annotation: repeat_region complement(19778..20064) ignored annotation: /note="Alu repeat copy V" ignored annotation: repeat_region 20486..20636 ignored annotation: /note="Alu repeat copy W" ignored annotation: repeat_region complement(20696..20990) ignored annotation: /note="Alu repeat copy X" ignored annotation: repeat_region complement(20996..21293) ignored annotation: /note="Alu repeat copy Y" ignored annotation: repeat_region 21582..21635 ignored annotation: /note="short interspersed repeat copy G" ignored annotation: repeat_region complement(21878..22171) ignored annotation: /note="Alu repeat copy Z" ignored annotation: repeat_region complement(23461..23773) ignored annotation: /note="Alu repeat copy AA" ignored annotation: unsure 24904 ignored annotation: /note="polymorphism or cloning error" ignored annotation: repeat_region 25311..25427 ignored annotation: /note="Alu repeat copy AB" ignored annotation: repeat_region complement(26280..26389) ignored annotation: /note="Alu repeat copy AC" ignored annotation: repeat_region complement(26844..27092) ignored annotation: /note="LINE repeat copy C (partial)" ignored annotation: exon 27892..27957 ignored annotation: /number=4 ignored annotation: mutation 27898 ignored annotation: /note="c in wt; t in Lesch-Nyhan RJK 1930 Gln->TAG [25]" ignored annotation: mutation 27912 ignored annotation: /note="c in wt; t in gout London Ser->Leu [1] [17] [25] ignored annotation: [10]" ignored annotation: intron 27958..31617 ignored annotation: /note="HPRT intron D" ignored annotation: repeat_region complement(28395..28431) ignored annotation: /note="short interspersed repeat copy H" ignored annotation: repeat_region 28924..28982 ignored annotation: /note="short interspersed repeat copy I" ignored annotation: repeat_region complement(29561..29864) ignored annotation: /note="Alu repeat copy AD" ignored annotation: exon 31618..31635 ignored annotation: /number=5 ignored annotation: mutation 31622 ignored annotation: /note="t in wt; a in Lesch-Nyhan Midland RJK 896 Val->Asp ignored annotation: [14] [23]" ignored annotation: mutation 31623..31625 ignored annotation: /note="ctt in wt; ct in Lesch-Nyhan RJK 2019 [25]" ignored annotation: mutation 31625 ignored annotation: /note="t in wt; c in Lesch-Nyhan RJK 1784 Leu->Ser [23]" ignored annotation: mutation 31629 ignored annotation: /note="t in wt; g in gout Ann Arbor Ile->Met [16]" ignored annotation: intron 31636..34937 ignored annotation: /note="HPRT intron E" ignored annotation: repeat_region complement(33149..33619) ignored annotation: /note="Alu repeat copy AE" ignored annotation: exon 34938..35020 ignored annotation: /number=6 ignored annotation: mutation 34963..34971 ignored annotation: /note="tgcag in wt; agcaaagcaa in Lesch-Nyhan RJK 1210 ignored annotation: Met->Lys [23]" ignored annotation: mutation 35016 ignored annotation: /note="g in wt; t in gout Milwaukee RJK 949 Ala->Ser [19] ignored annotation: [23]" ignored annotation: intron 35021..39815 ignored annotation: /note="HPRT intron F" ignored annotation: repeat_region 35563..35605 ignored annotation: /note="short interspersed repeat copy J" ignored annotation: repeat_region 36576..36646 ignored annotation: /note="Alu repeat copy AF" ignored annotation: repeat_region complement(37301..37559) ignored annotation: /note="LINE repeat copy D (partial)" ignored annotation: repeat_region 38614..39040 ignored annotation: /note="Alu repeat copy AG" ignored annotation: repeat_region 39092..39389 ignored annotation: /note="Alu repeat copy AH" ignored annotation: repeat_region complement(39428..39452) ignored annotation: /note="LINE repeat copy E (partial)" ignored annotation: exon 39816..39862 ignored annotation: /number=7 ignored annotation: mutation 39838 ignored annotation: /note="c in wt; t in Lesch-Nyhan RJK 974 Arg->TGA [23]" ignored annotation: mutation 39843..39847 ignored annotation: /note="tgttg in wt; tg in Lesch-Nyhan RJK 1894 [25]" ignored annotation: mutation 39859 ignored annotation: /note="g in wt; t in Lesch-Nyhan RJK 2185 Asp->Tyr [25]" ignored annotation: intron 39863..40033 ignored annotation: /note="HPRT intron G" ignored annotation: mutation 39867 ignored annotation: /note="g in wt; a in Lesch-Nyhan RJK 1934. no [25]" ignored annotation: exon 40034..40110 ignored annotation: /number=8 ignored annotation: mutation 40035..40039 ignored annotation: /note="tgttg in wt; tg in Lesch-Nyhan Michigan RJK 855 ignored annotation: [19] [23]" ignored annotation: mutation 40081 ignored annotation: /note="g in wt; a in Lesch-Nyhan Kingston RJK 2188 ignored annotation: Asp->Asn [25] [6]" ignored annotation: mutation 40096 ignored annotation: /note="t in wt; g in Lesch-Nyhan New Briton RJK 950 ignored annotation: Phe->Val [19] [23]" ignored annotation: mutation 40103 ignored annotation: /note="a in wt; g in gout Ashville Asp->Gly [21]" ignored annotation: intron 40111..41454 ignored annotation: /note="HPRT intron H" ignored annotation: mutation 40115 ignored annotation: /note="g in wt; a in Lesch-Nyhan RJK 888, GM 7092, no ignored annotation: [25]" ignored annotation: repeat_region 40623..40926 ignored annotation: /note="Alu repeat copy AI" ignored annotation: repeat_region 40953..41263 ignored annotation: /note="Alu repeat copy AJ" ignored annotation: mutation 41451..41453 ignored annotation: /note="ata in wt; ttt in Lesch-Nyhan RJK 906, GM 1899, ignored annotation: downstream cryptic splice site used" ignored annotation: exon 41455..>41502 ignored annotation: /note="hypoxanthine phosphoribosyltransferase" ignored annotation: /number=9 ignored annotation: mutation 41455 ignored annotation: /note="c in wt; g in Lesch-Nyhan RJK 1874, RJK 2079, ignored annotation: His->Asp [25] [23]" ignored annotation: mutation 41462 ignored annotation: /note="g in wt; a in Lesch-Nyhan RJK 1727 Cys->Tyr [23]" ignored annotation: mutation 41487..41510 ignored annotation: /note="aaaatacaaagcctaagatgagag in wt; ag in Lesch-Nyhan ignored annotation: Evansville RJK 894 [19] [25]" ignored annotation: repeat_region 42641..42937 ignored annotation: /note="Alu repeat copy AK" ignored annotation: repeat_region 44043..44109 ignored annotation: /note="short interspersed repeat copy K" ignored annotation: repeat_region complement(44487..44777) ignored annotation: /note="Alu repeat copy AL" ignored annotation: repeat_region complement(46306..46628) ignored annotation: /note="Alu repeat copy AM" ignored annotation: repeat_region 46629..46689 ignored annotation: /note="short interspersed repeat copy L" ignored annotation: repeat_region 47521..47764 ignored annotation: /note="Alu repeat copy AN" ignored annotation: repeat_region 49258..49552 ignored annotation: /note="Alu repeat copy AO" ignored annotation: repeat_region 49706..49994 ignored annotation: /note="Alu repeat copy AP" ignored annotation: repeat_region 50003..50313 ignored annotation: /note="Alu repeat copy AQ" ignored annotation: repeat_region complement(50775..51067) ignored annotation: /note="Alu repeat copy AR" ignored annotation: repeat_region complement(51101..51318) ignored annotation: /note="LINE repeat copy F (partial)" ignored annotation: repeat_region complement(51688..51716) ignored annotation: /note="short interspersed repeat copy M" ignored annotation: repeat_region complement(51979..52277) ignored annotation: /note="Alu repeat copy AS" ignored annotation: repeat_region 52408..52675 ignored annotation: /note="Alu repeat copy AT" ignored annotation: repeat_region complement(54552..54654) ignored annotation: /note="Alu repeat copy AU" ignored annotation: repeat_region complement(55165..55466) ignored annotation: /note="Alu repeat copy AV" ignored annotation: repeat_region 56524..56690 ignored annotation: /note="Alu repeat copy AW" ignored annotation: BASE COUNT 15689 a 11281 c 11599 g 18168 t // ** orig/raws/HUMHPRTB:1454: missing "mRNA" entry === HUMHSKPQZ7 === locus = HUMHSKPQZ7 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 262..303 ignored annotation: /number=2 CDS = 281..303,1099..1157,1248..1355,1564..1702,2225..2387,2462..2614 ignored annotation: /standard_name="Q1Z 7F5" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g184407" translation = MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS ignored annotation: intron 304..1098 ignored annotation: /number=2 ignored annotation: exon 1099..1157 ignored annotation: /number=3 ignored annotation: intron 1158..1247 ignored annotation: /number=3 ignored annotation: exon 1248..1355 ignored annotation: /number=4 ignored annotation: intron 1356..1563 ignored annotation: /number=4 ignored annotation: exon 1564..1702 ignored annotation: /number=5 ignored annotation: intron 1703..2224 ignored annotation: /number=5 ignored annotation: exon 2225..2387 ignored annotation: /number=6 ignored annotation: intron 2388..2461 ignored annotation: /number=6 ignored annotation: exon 2462..2677 ignored annotation: /number=7 ignored annotation: polyA_signal 2652..2657 ignored annotation: BASE COUNT 637 a 853 c 837 g 861 t // ** orig/raws/HUMHSKPQZ7:109: missing "mRNA" entry === HUMHSP27X === locus = HUMHSP27X ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Unassigned" ignored annotation: misc_feature 18..38 ignored annotation: /gene="HSPB1" ignored annotation: /note="heat control element; G00-127-602; putative" ignored annotation: repeat_region 46..58 ignored annotation: /gene="HSPB1" ignored annotation: /note="abbreviated repeat of Pelham sequence; G00-127-602" ignored annotation: CAAT_signal 130..137 ignored annotation: /gene="HSPB1" ignored annotation: /note="G00-127-602; putative" ignored annotation: misc_RNA 159 ignored annotation: /gene="HSPB1" ignored annotation: /note="CAP site; G00-127-602; putative" mRNA = 159..613,1337..1400,1519..1829 ignored annotation: /gene="HSPB1" ignored annotation: /note="major mRNA; G00-127-602" ignored annotation: exon 159..613 ignored annotation: /gene="HSPB1" ignored annotation: /note="G00-127-602" ignored annotation: /number=1 ignored annotation: gene join(159..613,1337..1400,1519..1829) ignored annotation: /gene="HSPB1" ignored annotation: prim_transcript 159..1829 ignored annotation: /gene="HSPB1" ignored annotation: /note="major transcript; G00-127-602" ignored annotation: CAAT_signal 181..187 ignored annotation: /gene="HSPB1" ignored annotation: /note="G00-127-602; putative" ignored annotation: misc_RNA 209 ignored annotation: /gene="HSPB1" ignored annotation: /note="CAP site; G00-127-602; putative" ignored annotation: prim_transcript 209..1829 ignored annotation: /gene="HSPB1" ignored annotation: /note="minor transcript; G00-127-602" mRNA join(209..613,1337..1400,1519..1829) ** orig/raws/HUMHSP27X:56: more than one "mRNA" entry === HUMHSP89KD === locus = HUMHSP89KD ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: TATA_signal 253..259 ignored annotation: /gene="HSP89-alpha" ignored annotation: exon 282..341 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=1 mRNA = 282..341,946..1107,1200..1566,1896..2029,2329..2646,2763..2928,3344..3534,3633..3780,4024..4292,4882..5215,5505..5614 ignored annotation: /gene="HSP89-alpha" ignored annotation: gene join(282..341,946..1107,1200..1566,1896..2029,2329..2646, ignored annotation: 2763..2928,3344..3534,3633..3780,4024..4292,4882..5215, ignored annotation: 5505..5614) ignored annotation: /gene="HSP89-alpha" ignored annotation: intron 342..945 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=1 CDS = 946..1107,1200..1566,1896..2029,2329..2646,2763..2928,3344..3534,3633..3780,4024..4292,4882..5215,5505..5614 ignored annotation: /gene="HSP89-alpha" ignored annotation: /codon_start=1 ignored annotation: /product="heat shock protein" ignored annotation: /db_xref="PID:g703087" translation = MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD ignored annotation: exon 946..1107 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=2 ignored annotation: intron 1108..1199 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=2 ignored annotation: exon 1200..1566 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=3 ignored annotation: intron 1567..1895 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=3 ignored annotation: exon 1896..2029 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=4 ignored annotation: intron 2030..2328 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=4 ignored annotation: exon 2329..2646 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=5 ignored annotation: intron 2647..2762 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=5 ignored annotation: exon 2763..2928 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=6 ignored annotation: intron 2929..3343 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=6 ignored annotation: exon 3344..3534 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=7 ignored annotation: intron 3535..3632 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=7 ignored annotation: exon 3633..3780 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=8 ignored annotation: intron 3781..4023 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=8 ignored annotation: exon 4024..4292 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=9 ignored annotation: intron 4293..4881 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=9 ignored annotation: exon 4882..5215 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=10 ignored annotation: intron 5216..5504 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=10 ignored annotation: exon 5505..6277 ignored annotation: /gene="HSP89-alpha" ignored annotation: /number=11 ignored annotation: polyA_signal 6255..6260 ignored annotation: /gene="HSP89-alpha" ignored annotation: polyA_site 6277 ignored annotation: /gene="HSP89-alpha" ignored annotation: BASE COUNT 2091 a 1436 c 1902 g 1964 t mRNA range 282..341 mRNA range 946..1107 mRNA range 1200..1566 mRNA range 1896..2029 mRNA range 2329..2646 mRNA range 2763..2928 mRNA range 3344..3534 mRNA range 3633..3780 mRNA range 4024..4292 mRNA range 4882..5215 mRNA range 5505..5614 CDS range 946..1107 CDS range 1200..1566 CDS range 1896..2029 CDS range 2329..2646 CDS range 2763..2928 CDS range 3344..3534 CDS range 3633..3780 CDS range 4024..4292 CDS range 4882..5215 CDS range 5505..5614 seq_ini = 1 seq_fin = 7393 i = 5614 last codon bas = ac[taa]tct last codon lab = EF[DEF]NNN === HUMHSP90B === locus = HUMHSP90B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 453..466 ignored annotation: /note="heat shock element 1" ignored annotation: misc_feature 463..476 ignored annotation: /note="heat shock element 2" ignored annotation: misc_feature 567..580 ignored annotation: /note="heat shock element 3" ignored annotation: CAAT_signal 1016..1019 ignored annotation: TATA_signal 1076..1082 ignored annotation: prim_transcript 1103..7886 ignored annotation: /note="HSP mRNA and introns" ignored annotation: intron 1202..2634 ignored annotation: /note="HSP intron A" ignored annotation: misc_feature 1785..1798 ignored annotation: /note="heat shock element 4" ignored annotation: misc_feature 1838..1851 ignored annotation: /note="heat shock element 5" ignored annotation: misc_feature 2437..2450 ignored annotation: /note="heat shock element 6" CDS = 2635..2781,3381..3587,3679..3838,4025..4158,4295..4603,5052..5217,5421..5611,5740..5887,6002..6270,7048..7381,7492..7601 ignored annotation: /partial ignored annotation: /note="90 kD heat shock protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386786" translation = MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEEDKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASRMEEVD ignored annotation: exon <2635..2781 ignored annotation: /note="90 kD heat shock protein, (first expressed exon)" ignored annotation: /number=2 ignored annotation: intron 2782..3380 ignored annotation: /note="HSP intron B" ignored annotation: exon 3381..3587 ignored annotation: /number=3 ignored annotation: intron 3588..3678 ignored annotation: /note="HSP intron C" ignored annotation: exon 3679..3838 ignored annotation: /number=4 ignored annotation: intron 3839..4024 ignored annotation: /note="HSP intron D" ignored annotation: exon 4025..4158 ignored annotation: /number=5 ignored annotation: intron 4159..4294 ignored annotation: /note="HSP intron E" ignored annotation: exon 4295..4603 ignored annotation: /number=6 ignored annotation: intron 4604..5051 ignored annotation: /note="HSP intron F" ignored annotation: exon 5052..5217 ignored annotation: /number=7 ignored annotation: intron 5218..5420 ignored annotation: /note="HSP intron G" ignored annotation: exon 5421..5611 ignored annotation: /number=8 ignored annotation: intron 5612..5739 ignored annotation: /note="HSP intron H" ignored annotation: exon 5740..5887 ignored annotation: /number=9 ignored annotation: intron 5888..6001 ignored annotation: /note="HSP intron I" ignored annotation: exon 6002..6270 ignored annotation: /number=10 ignored annotation: intron 6271..7047 ignored annotation: /note="HSP intron J" ignored annotation: exon 7048..7381 ignored annotation: /number=11 ignored annotation: intron 7382..7491 ignored annotation: /note="HSP intron K" ignored annotation: exon 7492..>7601 ignored annotation: /note="90 kD heat shock protein" ignored annotation: /number=12 ignored annotation: BASE COUNT 1871 a 1839 c 2186 g 2314 t // ** orig/raws/HUMHSP90B:243: missing "mRNA" entry === HUMI309 === locus = HUMI309 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="peripheral blood leukocyte" ignored annotation: /map="17" ignored annotation: exon 813..960 ignored annotation: /gene="SCYA1" ignored annotation: /note="G00-118-872" ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: gene join(813..960,2149..2260,3383..3664) ignored annotation: /gene="SCYA1" mRNA = 813..960,2149..2260,3383..3664 ignored annotation: /partial ignored annotation: /gene="SCYA1" ignored annotation: /note="G00-118-872" CDS = 885..960,2149..2260,3383..3485 ignored annotation: /gene="SCYA1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-118-872" ignored annotation: /product="secreted protein I-309" ignored annotation: /db_xref="PID:g184506" translation = MQIITTALVCLLLAGMWPEDVDSKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK ignored annotation: exon 2149..2260 ignored annotation: /gene="SCYA1" ignored annotation: /note="G00-118-872; putative" ignored annotation: /number=2 ignored annotation: exon 3383..3664 ignored annotation: /gene="SCYA1" ignored annotation: /note="G00-118-872; putative" ignored annotation: /number=3 ignored annotation: BASE COUNT 984 a 857 c 948 g 920 t mRNA range 813..960 mRNA range 2149..2260 mRNA range 3383..3664 CDS range 885..960 CDS range 2149..2260 CDS range 3383..3485 seq_ini = 1 seq_fin = 3709 i = 3485 last codon bas = aa[tga]gca last codon lab = EF[DEF]YYY === HUMIBP3 === locus = HUMIBP3 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /map="Unassigned" ignored annotation: promoter 102..1905 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: protein_bind 1808..1821 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: /bound_moiety="Sp1 and AP-2" ignored annotation: TATA_signal 1876..1881 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: exon 1906..2440 ignored annotation: /partial ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: /number=1 ignored annotation: sig_peptide 2038..2118 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: gene join(2038..2440,5726..5952,6497..6616,8212..8337) ignored annotation: /gene="IGFBP3" CDS = 2038..2440,5726..5952,6497..6616,8212..8337 ignored annotation: /gene="IGFBP3" ignored annotation: /note="The AAs encoded by bases 5728-5736 and 5917-5926 ignored annotation: may be ASN-linked glycosylation sites.; insulin-like ignored annotation: precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-126-724" ignored annotation: /product="growth factor-binding protein-3" ignored annotation: /db_xref="PID:g386791" translation = MQRARPTLWAAALTLLVLLRGPPVARAGASSGGLGPVVRCEPCDARALAQCAPPPAVCAELVREPGCGCCLTCALSEGQPCGIYTERCGSGLRCQPSPDEARPLQALLDGRGLCVNASAVSRLRAYLLPAPPAPGNASESEEDRSAGSVESPSVSSTHRVSDPKFHPLHSKIIIIKKGHAKDSQRYKVDYESQSTDTQNFSSESKRETEYGPCRREMEDTLNHLKFLNVLSPRGVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYTTKGKEDVHCYSMQSK ignored annotation: mat_peptide join(2119..2440,5726..5952,6497..6616,8212..8334) ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: /product="growth factor-binding protein-3" ignored annotation: intron 2441..5725 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: /number=1 ignored annotation: exon 5726..5952 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: /number=2 ignored annotation: intron 5953..6496 ignored annotation: /gene="IGFBP3" ignored annotation: /note="IGFBP-3 intron B; G00-126-724" ignored annotation: exon 6497..6616 ignored annotation: /gene="IGFBP3" ignored annotation: /note="insulin-like growth factor-binding protein-3 ignored annotation: precursor; G00-126-724" ignored annotation: /number=3 ignored annotation: intron 6617..8211 ignored annotation: /gene="IGFBP3" ignored annotation: /note="IGFBP-3 intron C; G00-126-724" ignored annotation: exon 8212..10775 ignored annotation: /gene="IGFBP3" ignored annotation: /note="insulin-like growth factor-binding protein-3 ignored annotation: precursor; G00-126-724" ignored annotation: /number=4 ignored annotation: polyA_signal 10751..10756 ignored annotation: /gene="IGFBP3" ignored annotation: /note="G00-126-724" ignored annotation: BASE COUNT 2796 a 2578 c 2737 g 2773 t // ** orig/raws/HUMIBP3:279: missing "mRNA" entry === HUMIDS === locus = HUMIDS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Xq27.3-q28" ignored annotation: gene join(1057..1159,1901..2037,2704..2881,5155..5243, ignored annotation: 7885..8085,9676..9846,15752..15878,19094..19267, ignored annotation: 22974..23446) ignored annotation: /gene="IDS" ignored annotation: exon <1057..1159 ignored annotation: /gene="IDS" ignored annotation: /number=1 CDS = 1057..1159,1901..2037,2704..2881,5155..5243,7885..8085,9676..9846,15752..15878,19094..19267,22974..23446 ignored annotation: /gene="IDS" ignored annotation: /codon_start=1 ignored annotation: /product="iduronate sulphate sulphatase" ignored annotation: /db_xref="PID:g530141" translation = MPPPRTGRGLLWLGLVLSSVCVALGSETQANSTTDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHAGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHTDDSPYSWSFPPYHPSSEKYENTKTCRGPDGELHANLLCPVDVLDVPEGTLPDKQSTEQAIQLLEKMKTSASPFFLAVGYHKPHIPFRYPKEFQKLYPLENITLAPDPEVPDGLPPVAYNPWMDIRQREDVQALNISVPYGPIPVDFQRKIRQSYFASVSYLDTQVGRLLSALDDLQLANSTIIAFTSDHGWALGEHGEWAKYSNFDVATHVPLIFYVPGRTASLPEAGEKLFPYLDPFDSASQLMEPGRQSMDLVELVSLFPTLAGLAGLQVPPRCPVPSFHVELCREGKNLLKHFRFRDLEEDPYLPGNPRELIAYSQYPRPSDIPQWNSDKPSLKDIKIMGYSIRTIDYRYTVWVGFNPDEFLANFSDIHAGELYFVDSDPLQDHNMYNDSQGGDLFQLLMP ignored annotation: intron 1160..1900 ignored annotation: /gene="IDS" ignored annotation: /number=1 ignored annotation: exon 1901..2037 ignored annotation: /gene="IDS" ignored annotation: /number=2 ignored annotation: intron 2038..2703 ignored annotation: /gene="IDS" ignored annotation: /number=2 ignored annotation: exon 2704..2881 ignored annotation: /gene="IDS" ignored annotation: /number=3 ignored annotation: intron 2882..5154 ignored annotation: /gene="IDS" ignored annotation: /number=3 ignored annotation: exon 5155..5243 ignored annotation: /gene="IDS" ignored annotation: /number=4 ignored annotation: intron 5244..7884 ignored annotation: /gene="IDS" ignored annotation: /number=4 ignored annotation: repeat_region 6827..7114 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 7117..7647 ignored annotation: /rpt_family="'Line1'" ignored annotation: exon 7885..8085 ignored annotation: /gene="IDS" ignored annotation: /number=5 ignored annotation: intron 8086..9675 ignored annotation: /gene="IDS" ignored annotation: /number=5 ignored annotation: exon 9676..9846 ignored annotation: /gene="IDS" ignored annotation: /number=6 ignored annotation: intron 9847..15751 ignored annotation: /gene="IDS" ignored annotation: /number=6 ignored annotation: exon 15752..15878 ignored annotation: /gene="IDS" ignored annotation: /number=7 ignored annotation: intron 15879..19093 ignored annotation: /gene="IDS" ignored annotation: /number=7 ignored annotation: exon 19094..19267 ignored annotation: /gene="IDS" ignored annotation: /number=8 ignored annotation: intron 19268..22972 ignored annotation: /gene="IDS" ignored annotation: /number=8 ignored annotation: repeat_region 21573..21864 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 21867..22051 ignored annotation: /rpt_family="'Line1'" ignored annotation: repeat_region 22098..22267 ignored annotation: /rpt_family="'Line1'" ignored annotation: exon 22974..>23446 ignored annotation: /gene="IDS" ignored annotation: /number=9 ignored annotation: repeat_region 25413..25686 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 26878..27162 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 29858..30098 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 30767..31068 ignored annotation: /rpt_family="'Alu'" ignored annotation: repeat_region 33970..34090 ignored annotation: /rpt_family="'Alu'" ignored annotation: BASE COUNT 9117 a 8696 c 8303 g 10729 t // ** orig/raws/HUMIDS:731: missing "mRNA" entry === HUMIFNRF1A === locus = HUMIFNRF1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="Placenta" ignored annotation: /map="5q23-q31" ignored annotation: exon 1..219 ignored annotation: /gene="IRF1" ignored annotation: /note="putative" ignored annotation: /number=1 ignored annotation: 5'UTR join(1..219,1279..1287) ignored annotation: /gene="IRF1" ignored annotation: gene join(1..219,1279..1287) ignored annotation: /gene="IRF1" ignored annotation: intron 220..1278 ignored annotation: /gene="IRF1" ignored annotation: /number=1 ignored annotation: exon 1279..1374 ignored annotation: /gene="IRF1" ignored annotation: /number=2 CDS = 1288..1374,2738..2837,3630..3806,3916..3965,4073..4202,4386..4508,5040..5089,6248..6383,6670..6794 ignored annotation: /gene="IRF1" ignored annotation: /codon_start=1 ignored annotation: /product="interferon regulatory factor 1" ignored annotation: /db_xref="PID:g184649" translation = MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKNMDATWLDSLLTPVRLPSIQAIPCAP ignored annotation: intron 1375..2737 ignored annotation: /gene="IRF1" ignored annotation: /number=2 ignored annotation: exon 2738..2837 ignored annotation: /gene="IRF1" ignored annotation: /number=3 ignored annotation: intron 2838..3629 ignored annotation: /gene="IRF1" ignored annotation: /number=3 ignored annotation: exon 3630..3806 ignored annotation: /gene="IRF1" ignored annotation: /number=4 ignored annotation: intron 3807..3915 ignored annotation: /gene="IRF1" ignored annotation: /number=4 ignored annotation: exon 3916..3965 ignored annotation: /gene="IRF1" ignored annotation: /number=5 ignored annotation: intron 3966..4072 ignored annotation: /gene="IRF1" ignored annotation: /number=5 ignored annotation: exon 4073..4202 ignored annotation: /gene="IRF1" ignored annotation: /number=6 ignored annotation: intron 4203..4385 ignored annotation: /gene="IRF1" ignored annotation: /number=6 ignored annotation: exon 4386..4508 ignored annotation: /gene="IRF1" ignored annotation: /number=7 ignored annotation: intron 4509..5039 ignored annotation: /gene="IRF1" ignored annotation: /number=7 ignored annotation: exon 5040..5089 ignored annotation: /gene="IRF1" ignored annotation: /number=8 ignored annotation: intron 5090..6247 ignored annotation: /gene="IRF1" ignored annotation: /number=8 ignored annotation: exon 6248..6383 ignored annotation: /gene="IRF1" ignored annotation: /number=9 ignored annotation: intron 6384..6669 ignored annotation: /gene="IRF1" ignored annotation: /number=9 ignored annotation: exon 6670..7656 ignored annotation: /gene="IRF1" ignored annotation: /number=10 ignored annotation: 3'UTR 6795..7656 ignored annotation: BASE COUNT 1750 a 1946 c 2253 g 1772 t // ** orig/raws/HUMIFNRF1A:227: missing "mRNA" entry === HUMIGERA === locus = HUMIGERA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /tissue_lib="Clontech Cat. #Li067j" ignored annotation: precursor_RNA 1258..7146 ignored annotation: exon 1258..1341 ignored annotation: /number=1 CDS = 1287..1341,1776..1796,2850..3104,4910..5167,6670..6854 ignored annotation: /codon_start=1 ignored annotation: /product="immunoglobulin receptor alpha chain" ignored annotation: /db_xref="PID:g410212" translation = MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREKYWLQFFIPLLVVILFAVDTGLFISTQQQVTFLLKIKRTRKGFRLLNPHPKPNPKNN ignored annotation: intron 1342..1775 ignored annotation: /number=1 ignored annotation: exon 1776..1796 ignored annotation: /number=2 ignored annotation: intron 1797..2849 ignored annotation: /number=2 ignored annotation: exon 2850..3104 ignored annotation: /number=3 ignored annotation: intron 3105..4909 ignored annotation: /number=3 ignored annotation: exon 4910..5167 ignored annotation: /number=4 ignored annotation: intron 5168..6669 ignored annotation: /number=4 ignored annotation: exon 6670..7146 ignored annotation: /number=5 ignored annotation: polyA_signal 7044..7049 ignored annotation: polyA_signal 7104..7109 ignored annotation: polyA_signal 7109..7114 ignored annotation: BASE COUNT 2270 a 1451 c 1538 g 2400 t // ** orig/raws/HUMIGERA:186: missing "mRNA" entry === HUMIL1B === locus = HUMIL1B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="Lambda-hilb[4,8]" ignored annotation: /map="2q13-q21" ignored annotation: prim_transcript 374..7380 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b mRNA and introns; G00-120-094" ignored annotation: gene 374..7380 ignored annotation: /gene="IL1B" ignored annotation: intron 446..908 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b intron A; G00-120-094" CDS = 924..970,1536..1587,3576..3777,4323..4487,5723..5853,6570..6782 ignored annotation: /gene="IL1B" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-094" ignored annotation: /product="interleukin 1-beta" ignored annotation: /db_xref="PID:g386816" translation = MAEVPELASEMMAYYSGNEDDLFFEADGPKQMKCSFQDLDLCPLDGGIQLRISDHHYSKGFRQAASVVVAMDKLRKMLVPCPQTFQENDLSTFFPFIFEEEPIFFDTWDNEAYVHDAPVRSLNCTLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEKRFVFNKIEINNKLEFESAQFPNWYISTSQAENMPVFLGGTKGGQDITDFTMQFVSS ignored annotation: exon <924..970 ignored annotation: /gene="IL1B" ignored annotation: /note="interleukin-1 beta, (first expressed exon); ignored annotation: G00-120-094" ignored annotation: /number=2 ignored annotation: intron 971..1535 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b intron B; G00-120-094" ignored annotation: exon 1536..1587 ignored annotation: /gene="IL1B" ignored annotation: /note="interleukin-1 beta; G00-120-094" ignored annotation: /number=3 ignored annotation: intron 1588..3575 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b intron C; G00-120-094" ignored annotation: repeat_region 3110..3429 ignored annotation: /note="Alu repeat copy A; G00-120-094" ignored annotation: exon 3576..3777 ignored annotation: /gene="IL1B" ignored annotation: /note="interleukin-1 beta; G00-120-094" ignored annotation: /number=4 ignored annotation: intron 3778..4322 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b intron D; G00-120-094" ignored annotation: exon 4323..4487 ignored annotation: /gene="IL1B" ignored annotation: /note="interleukin-1 beta; G00-120-094" ignored annotation: /number=5 ignored annotation: intron 4488..5722 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b intron E; G00-120-094" ignored annotation: exon 5723..5853 ignored annotation: /gene="IL1B" ignored annotation: /note="interleukin-1 beta; G00-120-094" ignored annotation: /number=6 ignored annotation: intron 5854..6569 ignored annotation: /gene="IL1B" ignored annotation: /note="IL1b intron F; G00-120-094" ignored annotation: exon 6570..>6782 ignored annotation: /gene="IL1B" ignored annotation: /note="interleukin-1 beta; G00-120-094" ignored annotation: /number=7 ignored annotation: repeat_region 7280..7379 ignored annotation: /note="Alu repeat copy B; G00-120-094" ignored annotation: BASE COUNT 2099 a 1905 c 1624 g 2195 t 1 others 1321 aacagggagc ncccagggtg cccacctgcc aggcctagaa tctgccttct ggactgttct ** orig/raws/HUMIL1B:115: invalid base letter "n" === HUMIL2RGA === locus = HUMIL2RGA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 74..202 ignored annotation: /number=1 CDS = 88..202,581..734,943..1127,1336..1475,2239..2401,2934..3030,3283..3352,3708..3893 ignored annotation: /codon_start=1 ignored annotation: /product="interleukin-2 receptor gamma subunit" ignored annotation: /db_xref="PID:g349632" translation = MLKPSLPFTSLLFLQLPLLGVGLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWNSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKENPFLFALEAVVISVGSMGLIISLLCVYFWLERTMPRIPTLKNLEDLVTEYHGNFSAWSGVSKGLAESLQPDYSERLCLVSEIPPKGGALGEGPGASPCNQHSPYWAPPCYTLKPET ignored annotation: intron 203..580 ignored annotation: /number=1 ignored annotation: mutation 366..369 ignored annotation: /note="deletion" ignored annotation: repeat_region 394..511 ignored annotation: /rpt_family="Alu-like" ignored annotation: exon 581..734 ignored annotation: /number=2 ignored annotation: intron 735..942 ignored annotation: /number=2 ignored annotation: exon 943..1127 ignored annotation: /number=3 ignored annotation: intron 1128..1335 ignored annotation: /number=3 ignored annotation: exon 1336..1475 ignored annotation: /number=4 ignored annotation: intron 1476..2238 ignored annotation: /number=4 ignored annotation: repeat_unit 1643..1655 ignored annotation: /note="flanking" ignored annotation: repeat_region 1656..1976 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 1977..1989 ignored annotation: /note="flanking" ignored annotation: exon 2239..2401 ignored annotation: /number=5 ignored annotation: intron 2402..2933 ignored annotation: /number=5 ignored annotation: exon 2934..3030 ignored annotation: /number=6 ignored annotation: intron 3031..3282 ignored annotation: /number=6 ignored annotation: exon 3283..3352 ignored annotation: /number=7 ignored annotation: intron 3353..3707 ignored annotation: /number=7 ignored annotation: exon 3708..4038 ignored annotation: /number=8 ignored annotation: BASE COUNT 982 a 995 c 1030 g 1031 t // ** orig/raws/HUMIL2RGA:143: missing "mRNA" entry === HUMIL4A === locus = HUMIL4A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="5q23-q31" ignored annotation: TATA_signal 1079..1086 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: gene join(1106..1305,1578..1625,6826..7002,9591..9783) ignored annotation: /gene="IL4" ignored annotation: prim_transcript 1106..9783 ignored annotation: /gene="IL4" ignored annotation: /note="exons and introns; G00-120-096" ignored annotation: exon 1106..1305 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=1 ignored annotation: /product="interleukin 4" mRNA = 1106..1305,1578..1625,6826..7002,9591..9783 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /product="interleukin 4" CDS = 1171..1305,1578..1625,6826..7002,9591..9692 ignored annotation: /gene="IL4" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-096" ignored annotation: /product="interleukin 4" ignored annotation: /db_xref="PID:g186337" translation = MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMREKYSKCSS ignored annotation: intron 1306..1577 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=1 ignored annotation: exon 1578..1625 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=2 ignored annotation: /product="interleukin 4" ignored annotation: intron 1626..6825 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=2 ignored annotation: exon 6826..7002 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=3 ignored annotation: /product="interleukin 4" ignored annotation: intron 7003..9590 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=3 ignored annotation: exon 9591..9783 ignored annotation: /gene="IL4" ignored annotation: /note="G00-120-096" ignored annotation: /number=4 ignored annotation: /product="interleukin 4" ignored annotation: BASE COUNT 2687 a 2204 c 2478 g 2531 t mRNA range 1106..1305 mRNA range 1578..1625 mRNA range 6826..7002 mRNA range 9591..9783 CDS range 1171..1305 CDS range 1578..1625 CDS range 6826..7002 CDS range 9591..9692 seq_ini = 1 seq_fin = 9900 i = 9692 last codon bas = gc[tga]ata last codon lab = EF[DEF]YYY === HUMIL5 === locus = HUMIL5 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="fetal liver, placenta, and myeloma cells" ignored annotation: /cell_line="myeloma cell line 266B1" ignored annotation: /clone="Lambda-[12,22,38]" ignored annotation: /map="1589 bp upstream of HindIII site; 5q23.3-q32" ignored annotation: /chromosome="5" ignored annotation: prim_transcript 509..2583 ignored annotation: /note="IL5 mRNA and introns" CDS = 553..696,905..937,1883..2011,2118..2216 ignored annotation: /gene="IL5" ignored annotation: /codon_start=1 ignored annotation: /product="interleukin 5" ignored annotation: /db_xref="PID:g386822" translation = MRMLLHLSLLALGAAYVYAIPTEIPTSALVKETLALLSTHRTLLIANETLRIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQEFLGVMNTEWIIES ignored annotation: exon <553..696 ignored annotation: /gene="IL5" ignored annotation: /number=1 ignored annotation: /product="interleukin 5; G00-120-097" ignored annotation: gene 553..2216 ignored annotation: /gene="IL5" ignored annotation: intron 697..904 ignored annotation: /gene="IL5" ignored annotation: /note="IL5 intron A" ignored annotation: exon 905..937 ignored annotation: /gene="IL5" ignored annotation: /number=2 ignored annotation: intron 938..1882 ignored annotation: /gene="IL5" ignored annotation: /note="IL5 intron B" ignored annotation: exon 1883..2011 ignored annotation: /gene="IL5" ignored annotation: /number=3 ignored annotation: intron 2012..2117 ignored annotation: /gene="IL5" ignored annotation: /note="IL5 intron C" ignored annotation: exon 2118..>2216 ignored annotation: /gene="IL5" ignored annotation: /number=4 ignored annotation: BASE COUNT 1027 a 545 c 622 g 1036 t // ** orig/raws/HUMIL5:119: missing "mRNA" entry === HUMIL8A === locus = HUMIL8A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="4q13-q21" ignored annotation: CAAT_signal 1382..1388 ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: TATA_signal 1462..1469 ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: exon 1482..1647 ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: /number=1 mRNA = 1482..1647,2464..2599,2871..2954,3370..(4216.4236) ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: gene join(1482..1647,2464..2599,2871..2954,3370..(4216.4236)) ignored annotation: /gene="IL8" CDS = 1584..1647,2464..2599,2871..2954,3370..3385 ignored annotation: /gene="IL8" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-099" ignored annotation: /product="interleukin 8" ignored annotation: /db_xref="PID:g186368" translation = MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS ignored annotation: exon 2464..2599 ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: /number=2 ignored annotation: exon 2871..2954 ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: /number=3 ignored annotation: exon 3370..(4216.4236) ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099" ignored annotation: /number=4 ignored annotation: polyA_signal 4199..4204 ignored annotation: /gene="IL8" ignored annotation: /note="G00-120-099; putative" ignored annotation: BASE COUNT 1728 a 870 c 858 g 1735 t mRNA range 1482..1647 mRNA range 2464..2599 mRNA range 2871..2954 // ** orig/raws/HUMIL8A:149: bad range format "3370..(4216.4236)" === HUMIL9RA === locus = HUMIL9RA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="LB33.DAUV" ignored annotation: /cell_type="melanoma cell" ignored annotation: /dev_stage="Adult" ignored annotation: /sex="female" ignored annotation: /tissue_type="melanoma" ignored annotation: /chromosome="X" ignored annotation: repeat_unit 1..17073 ignored annotation: /gene="IL9R" ignored annotation: /rpt_family="Alu repeat" ignored annotation: promoter 1..1572 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: gene 1..17073 ignored annotation: /gene="IL9R" mRNA = 1573..1814,6934..7047,7477..7588,7705..7883,8448..8593,9306..9507,10111..10216,11551..11635,13833..17073 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: exon 1573..1814 ignored annotation: /gene="IL9R" ignored annotation: /note="1a; G00-134-444" ignored annotation: /number=1 CDS = 1787..1814,6934..7047,7477..7588,7705..7883,8448..8593,9306..9507,10111..10216,11551..11635,13833..14426 ignored annotation: /gene="IL9R" ignored annotation: /codon_start=1 ignored annotation: /product="interleukin 9 receptor" ignored annotation: /db_xref="PID:g632993" ignored annotation: /db_xref="GDB:G00-134-444" translation = MGLGRCIWEGWTLESEALRRDMGTWLLACICICTCVCLGVSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPELGQGSSPWLLFTSNQAPGGTHKCILRGSECTVVLPPEAVLVPSDNFTITFHHCMSGREQVSLVDPEYLPRRHVKLDPPSDLQSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVTWLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIPPWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQTWMGAHGAGVLLSQDCAGTPQGALEPCVQEATALLTCGPARPWKSVALEEEQEGPGTRLPGNLSSEDVLPAGCTEWRVQTLAYLPQEDWAPTSLTRPAPPDSEGSRSSSSSSSSNNNNYCALGCYGGWHLSALPGNTQSSGPIPALACGLSCDHQGLETQQGVAWVLAGHCQRPGLHEDLQGMLLPSVLSKARSWTF ignored annotation: sig_peptide join(1787..1814,6934..7025) ignored annotation: /gene="IL9R" ignored annotation: intron 1815..2621 ignored annotation: /gene="IL9R" ignored annotation: /note="1a" ignored annotation: /number=1 ignored annotation: exon 2622..2741 ignored annotation: /gene="IL9R" ignored annotation: /note="1b; G00-134-444" ignored annotation: /number=1 ignored annotation: intron 2742..5356 ignored annotation: /gene="IL9R" ignored annotation: /note="1b" ignored annotation: /number=1 ignored annotation: exon 5357..5535 ignored annotation: /gene="IL9R" ignored annotation: /note="1c; G00-134-444" ignored annotation: /number=1 ignored annotation: intron 5536..6933 ignored annotation: /gene="IL9R" ignored annotation: /note="1c" ignored annotation: /number=1 ignored annotation: exon 6934..7047 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=2 ignored annotation: mat_peptide join(7026..7047,7477..7588,7705..7883,8448..8593, ignored annotation: 9306..9507,10111..10216,11551..11635,13833..14423) ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /product="interleukin 9 receptor" ignored annotation: intron 7048..7476 ignored annotation: /gene="IL9R" ignored annotation: /number=2 ignored annotation: exon 7477..7588 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=3 ignored annotation: intron 7589..7704 ignored annotation: /gene="IL9R" ignored annotation: /number=3 ignored annotation: exon 7705..7883 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=4 ignored annotation: intron 7884..8447 ignored annotation: /gene="IL9R" ignored annotation: /number=4 ignored annotation: exon 8448..8593 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=5 ignored annotation: intron 8594..9305 ignored annotation: /gene="IL9R" ignored annotation: /number=5 ignored annotation: exon 9306..9507 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=6 ignored annotation: intron 9508..10110 ignored annotation: /gene="IL9R" ignored annotation: /number=6 ignored annotation: exon 10111..10216 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=7 ignored annotation: intron 10217..11550 ignored annotation: /gene="IL9R" ignored annotation: /number=7 ignored annotation: exon 11551..11635 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=8 ignored annotation: intron 11636..13832 ignored annotation: /gene="IL9R" ignored annotation: /number=8 ignored annotation: repeat_unit 12885..13467 ignored annotation: /gene="IL9R" ignored annotation: /rpt_family="GT repeat" ignored annotation: exon 13833..17073 ignored annotation: /gene="IL9R" ignored annotation: /note="G00-134-444" ignored annotation: /number=9 ignored annotation: polyA_signal one-of(15339..15345,17016..17022) ignored annotation: /gene="IL9R" ignored annotation: /note="putative" ignored annotation: BASE COUNT 3514 a 4234 c 5045 g 4280 t mRNA range 1573..1814 mRNA range 6934..7047 mRNA range 7477..7588 mRNA range 7705..7883 mRNA range 8448..8593 mRNA range 9306..9507 mRNA range 10111..10216 mRNA range 11551..11635 mRNA range 13833..17073 CDS range 1787..1814 CDS range 6934..7047 CDS range 7477..7588 CDS range 7705..7883 CDS range 8448..8593 CDS range 9306..9507 CDS range 10111..10216 CDS range 11551..11635 CDS range 13833..14426 seq_ini = 1 seq_fin = 17073 i = 14426 last codon bas = tc[tag]gtc last codon lab = EF[DEF]YYY === HUMIMPDH === locus = HUMIMPDH ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="blood" ignored annotation: /tissue_lib="lambda GEM-11 (Promega)" ignored annotation: /map="karyotype band P21.2-P24.2" ignored annotation: promoter 879..1000 ignored annotation: /gene="IMPDH2" ignored annotation: /note="minimal promoter" ignored annotation: gene join(983..1182,1628..1676,1900..2001,2110..2184, ignored annotation: 2516..2722,3385..3472,3546..3746,3825..3914,4014..4109, ignored annotation: 5163..5451,5545..5688,5769..5852,5943..>6005) ignored annotation: /gene="IMPDH2" ignored annotation: misc_feature 983 ignored annotation: /gene="IMPDH2" ignored annotation: /note="major cap site" ignored annotation: exon 983..1182 ignored annotation: /gene="IMPDH2" ignored annotation: /number=1 mRNA = 983..1182,1628..1676,1900..2001,2110..2184,2516..2722,3385..3472,3546..3746,3825..3914,4014..4109,5163..5451,5545..5688,5769..5852,5943..>6005 ignored annotation: /gene="IMPDH2" ignored annotation: misc_feature 1000 ignored annotation: /gene="IMPDH2" ignored annotation: /note="minor cap site" CDS = 1085..1182,1628..1676,1900..2001,2110..2184,2516..2722,3385..3472,3546..3746,3825..3914,4014..4109,5163..5451,5545..5688,5769..5852,5943..5964 ignored annotation: /gene="IMPDH2" ignored annotation: /EC_number="1.1.1.205" ignored annotation: /codon_start=1 ignored annotation: /product="inosine monophosphate dehydrogenase type II" ignored annotation: /db_xref="PID:g602458" translation = MADYLISGGTSYVPDDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDCFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF ignored annotation: intron 1183..1627 ignored annotation: /gene="IMPDH2" ignored annotation: /number=1 ignored annotation: exon 1628..1676 ignored annotation: /gene="IMPDH2" ignored annotation: /number=2 ignored annotation: intron 1677..1899 ignored annotation: /gene="IMPDH2" ignored annotation: /number=2 ignored annotation: exon 1900..2001 ignored annotation: /gene="IMPDH2" ignored annotation: /number=3 ignored annotation: intron 2002..2109 ignored annotation: /gene="IMPDH2" ignored annotation: /number=3 ignored annotation: exon 2110..2184 ignored annotation: /gene="IMPDH2" ignored annotation: /number=4 ignored annotation: intron 2185..2515 ignored annotation: /gene="IMPDH2" ignored annotation: /number=4 ignored annotation: exon 2516..2722 ignored annotation: /gene="IMPDH2" ignored annotation: /number=5 ignored annotation: intron 2723..3384 ignored annotation: /gene="IMPDH2" ignored annotation: /number=5 ignored annotation: exon 3385..3472 ignored annotation: /gene="IMPDH2" ignored annotation: /number=6 ignored annotation: intron 3473..3545 ignored annotation: /gene="IMPDH2" ignored annotation: /number=6 ignored annotation: exon 3546..3746 ignored annotation: /gene="IMPDH2" ignored annotation: /number=7 ignored annotation: intron 3747..3824 ignored annotation: /gene="IMPDH2" ignored annotation: /number=7 ignored annotation: exon 3825..3914 ignored annotation: /gene="IMPDH2" ignored annotation: /number=8 ignored annotation: intron 3915..4013 ignored annotation: /gene="IMPDH2" ignored annotation: /number=8 ignored annotation: exon 4014..4109 ignored annotation: /gene="IMPDH2" ignored annotation: /number=9 ignored annotation: intron 4110..5162 ignored annotation: /gene="IMPDH2" ignored annotation: /number=9 ignored annotation: exon 5163..5451 ignored annotation: /gene="IMPDH2" ignored annotation: /number=10 ignored annotation: intron 5452..5544 ignored annotation: /gene="IMPDH2" ignored annotation: /number=10 ignored annotation: exon 5545..5688 ignored annotation: /gene="IMPDH2" ignored annotation: /number=11 ignored annotation: intron 5689..5768 ignored annotation: /gene="IMPDH2" ignored annotation: /number=11 ignored annotation: exon 5769..5852 ignored annotation: /gene="IMPDH2" ignored annotation: /number=12 ignored annotation: intron 5853..5942 ignored annotation: /gene="IMPDH2" ignored annotation: /number=12 ignored annotation: exon 5943..>6005 ignored annotation: /gene="IMPDH2" ignored annotation: /number=13 ignored annotation: polyA_signal 6000..6005 ignored annotation: /gene="IMPDH2" ignored annotation: BASE COUNT 1404 a 1597 c 1628 g 1564 t mRNA range 983..1182 mRNA range 1628..1676 mRNA range 1900..2001 mRNA range 2110..2184 mRNA range 2516..2722 mRNA range 3385..3472 mRNA range 3546..3746 mRNA range 3825..3914 mRNA range 4014..4109 mRNA range 5163..5451 mRNA range 5545..5688 mRNA range 5769..5852 mRNA range 5943..6005 CDS range 1085..1182 CDS range 1628..1676 CDS range 1900..2001 CDS range 2110..2184 CDS range 2516..2722 CDS range 3385..3472 CDS range 3546..3746 CDS range 3825..3914 CDS range 4014..4109 CDS range 5163..5451 CDS range 5545..5688 CDS range 5769..5852 CDS range 5943..5964 seq_ini = 1 seq_fin = 6193 i = 5964 last codon bas = tc[tga]aaa last codon lab = EF[DEF]YYY === HUMINCP === locus = HUMINCP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 12..>3628 ignored annotation: /note="CPI mRNA and introns" CDS = 341..568,2079..2192,3311..3394 ignored annotation: /partial ignored annotation: /note="cysteine-proteinase inhibitor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386825" translation = MAQHLSTLLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNKATKDDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPWENRRSLVKSRCQES ignored annotation: exon <341..568 ignored annotation: /note="cysteine-proteinase inhibitor" ignored annotation: /number=1 ignored annotation: intron 569..2078 ignored annotation: /note="CPI intron A" ignored annotation: exon 2079..2192 ignored annotation: /number=1 ignored annotation: intron 2193..3310 ignored annotation: /note="CPI intron B" ignored annotation: exon 3311..>3394 ignored annotation: /note="cysteine-proteinase inhibitor" ignored annotation: /number=1 ignored annotation: BASE COUNT 775 a 1005 c 1093 g 843 t // ** orig/raws/HUMINCP:108: missing "mRNA" entry === HUMIRBPG === locus = HUMIRBPG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /clone="HGL3" ignored annotation: /map="chromosome 10" ignored annotation: prim_transcript 1..>9505 ignored annotation: /note="IRBP mRNA and introns (alt.)" ignored annotation: prim_transcript 7..>9505 ignored annotation: /note="IRBP mRNA and introns" ignored annotation: prim_transcript 15..>9505 ignored annotation: /note="IRBP mRNA and introns (alt.)" CDS = 130..3180,4966..5156,7017..7159,8766..9121 ignored annotation: /gene="IRBP" ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="interstitial retinol-binding protein" ignored annotation: /db_xref="PID:g386835" translation = MREWVLLMSVLLCGLAGPTHLFQPSLVLDMAKVLLDNYCFPENLLGMQEAIQQAIKSHEILSISDPQTLASVLTAGVQSSLNDPRLVISYEPSTPEPPPQVPALTSLSEEELLAWLQRGLRHEVLEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLDLRHCTGGQVSGIPYIISYLHPGNTILHVDTIYNRPSNTTTEIWTLPQVLGERYGADKDVVVLTSSQTRGVAEDIAHILKQMRRAIVVGERTGGGALDLRKLRIGESDFFFTVPVSRSLGPLGGGSQTWEGSGVLPCVGTPAEQALEKALAILTLRSALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDEAIRQALVDSVFQVSVLPGNVGYLRFDSFADASVLGVLAPYVLRQVWEPLQDTEHLIMDLRHNPGGPSSAVPLLLSYFQGPEAGPVHLFTTYDRRTNITQEHFSHMELPGPRYSTQRGVYLLTSHRTATAAEEFAFLMQSLGWATLVGEITAGNLLHTRTVPLLDTPEGSLALTVPVLTFIDNHGEAWLGGGVVPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQTSALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLLVFHSPGELVVEEAPPPPPAVPSPEELTYLIEALFKTEVLPGQLGYLRFDAMAELETVKAVGPQLVRLVWQQLVDTAALVIDLRYNPGSYSTAIPLLCSYFFEAEPRQHLYSVFDRATSKVTEVWTLPQVAGQRYGSHKDLYILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGSSPLYASMPTQMAMSATTGKAWDLAGVEPDITVPMSEALSIAQDIVALRAKVPTVLQTAGKLVADNYASAELGAKMATKLSGLQSRYSRVTSEVALAEILGADLQMLSGDPHLKAAHIPENAKDRIPGIVPMQIPSPEVFEELIKFSFHTNVLEDNIGYLRFDMFGDGELLTQVSRLLVEHIWKKIMHTDAMIIDMRFNIGGPTSSIPILCSYFFDEGPPVLLDKIYSRPDDSVSELWTHAQVVGERYGSKKSMVILTSSVTAGTAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTNLYLTIPTARSVGASDGSSWEGVGVTPHVVVPAEEALARAKEMLQHNQLRVKRSPGLQDHL ignored annotation: sig_peptide 130..177 ignored annotation: /gene="IRBP" ignored annotation: gene join(130..3180,4966..5156,7017..7159,8766..9121) ignored annotation: /gene="IRBP" ignored annotation: exon <130..3180 ignored annotation: /gene="IRBP" ignored annotation: /number=1 ignored annotation: mat_peptide join(178..3180,4966..5156,7017..7159,8766..9118) ignored annotation: /gene="IRBP" ignored annotation: /product="interstitial retinol-binding protein" ignored annotation: intron 3181..4965 ignored annotation: /note="IRBP intron A" ignored annotation: exon 4966..5156 ignored annotation: /gene="IRBP" ignored annotation: /number=2 ignored annotation: intron 5157..7016 ignored annotation: /note="IRBP intron B" ignored annotation: exon 7017..7159 ignored annotation: /gene="IRBP" ignored annotation: /number=3 ignored annotation: intron 7160..8765 ignored annotation: /note="IRBP intron C" ignored annotation: exon 8766..>9121 ignored annotation: /gene="IRBP" ignored annotation: /number=4 ignored annotation: BASE COUNT 2246 a 2672 c 2641 g 2152 t // ** orig/raws/HUMIRBPG:247: missing "mRNA" entry === HUMKALLIST === locus = HUMKALLIST ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_lib="Stratagene lambda Fix II" ignored annotation: /map="14q31" mRNA = <3201..3849,6685..6958,7844..8003,9110..>9310 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: exon <3201..3849 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=1 ignored annotation: gene join(<3201..3849,6685..6958,7844..8003,9110..>9310) ignored annotation: /gene="PI4" CDS = 3201..3849,6685..6958,7844..8003,9110..9310 ignored annotation: /gene="PI4" ignored annotation: /standard_name="protease inhibitor 4" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-266-537" ignored annotation: /product="kallistatin" ignored annotation: /db_xref="PID:g619783" translation = MHLIDYLLLLLVGLLALSHGQLHVEHDGESCSNSSHQQILETGEGSPSLKIAPANADFAFRFYYLIASETPGKNIFFSPLSISAAYAMLSLGACSHSRSQILEGLGFNLTELSESDVHRGFQHLLHTLNLPGHGLETRVGSALFLSHNLKFLAKFLNDTMAVYEAKLFHTNFYDTVGTIQLINDHVKKETRGKIVDLVSELKKDVLMVLVNYIYFKALWEKPFISSRTTPKDFYVDENTTVRVPMMLQDQEHHWYLHDRYLPCSVLRMDYKGDATVFFILPNQGKMREIEEVLTPEMLMRWNNLLRKRNFYKKLELHLPKFSISGSYVLDQILPRLGFTDLFSKWADLSGITKQQKLEASKSFHKATLDVDEAGTEAAAATTFAIKFFSAQTNRHILRFNRPFLVVIFSTSTQSVLFLGKVVDPTKP ignored annotation: intron 3850..6684 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=1 ignored annotation: exon 6685..6958 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=2 ignored annotation: intron 6959..7843 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=2 ignored annotation: exon 7844..8003 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=3 ignored annotation: intron 8004..9109 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=3 ignored annotation: exon 9110..>9310 ignored annotation: /gene="PI4" ignored annotation: /note="G00-266-537" ignored annotation: /number=4 ignored annotation: BASE COUNT 2606 a 2301 c 2350 g 2361 t mRNA range 3201..3849 mRNA range 6685..6958 mRNA range 7844..8003 mRNA range 9110..9310 CDS range 3201..3849 CDS range 6685..6958 CDS range 7844..8003 CDS range 9110..9310 seq_ini = 1 seq_fin = 9618 i = 9310 last codon bas = ca[tag]ccc last codon lab = EF[DEF]NNN === HUMLHDC === locus = HUMLHDC ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone_lib="EMBL3" ignored annotation: protein_bind 5447..5452 ignored annotation: /bound_moiety="GATA binding protein" ignored annotation: protein_bind 5460..5464 ignored annotation: /bound_moiety="LBP-1 (leader-binding protein-1)" ignored annotation: misc_signal 5592..5597 ignored annotation: /note="CACC box" ignored annotation: misc_signal 5733..5738 ignored annotation: /note="CACC box" ignored annotation: misc_signal 6124..6129 ignored annotation: /note="CACC box" ignored annotation: protein_bind 6551..6555 ignored annotation: /bound_moiety="LBP-1" ignored annotation: protein_bind 6788..6793 ignored annotation: /bound_moiety="GATA binding protein" ignored annotation: protein_bind 6826..6831 ignored annotation: /bound_moiety="GATA binding protein" ignored annotation: protein_bind 6895..6900 ignored annotation: /bound_moiety="GATA binding protein" ignored annotation: protein_bind 6965..6969 ignored annotation: /bound_moiety="LBP-1" ignored annotation: protein_bind 7169..7173 ignored annotation: /bound_moiety="LBP-1" ignored annotation: misc_signal 7183..7188 ignored annotation: /note="CACC box" ignored annotation: GC_signal 7221..7226 ignored annotation: TATA_signal 7252..7259 ignored annotation: /note="TATA-like sequence" ignored annotation: protein_bind 7268..7272 ignored annotation: /bound_moiety="LBP-1" ignored annotation: exon 7278..7414 ignored annotation: /number=1 ignored annotation: protein_bind 7292..7296 ignored annotation: /bound_moiety="LBP-1" CDS = 7384..7414,9600..9772,14491..14604,15461..15583,18247..18381,18638..18781,19245..19311,20137..20299,20391..20481,24567..24665,29671..29772,29907..30653 ignored annotation: /EC_number="4.1.1.22" ignored annotation: /codon_start=1 ignored annotation: /product="L-histidine decarboxylase" ignored annotation: /db_xref="PID:d1004531" ignored annotation: /db_xref="PID:g516771" translation = MMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESCLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNCLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILSQHCTSQPSPRVGNLISQIRGARAWACGTSLQSVSGAGDDPVQARKIIKQPQRVGAGPMKRENGLHLETLLDPVDDCFSEEAPDATKHKLSSFLFSYLSVQTKKKTVRSLSCNSVPVSAQKPLPTEASVKNGGSSRVRIFSRFPEDMMMLKKSAFKKLIKFYSVPSFPECSSQCGLQLPCCPLQAMV ignored annotation: intron 7415..9599 ignored annotation: /number=1 ignored annotation: exon 9600..9772 ignored annotation: /number=2 ignored annotation: intron 9773..14490 ignored annotation: /number=2 ignored annotation: exon 14491..14604 ignored annotation: /number=3 ignored annotation: intron 14605..15460 ignored annotation: /number=3 ignored annotation: exon 15461..15583 ignored annotation: /number=4 ignored annotation: intron 15584..18246 ignored annotation: /number=4 ignored annotation: exon 18247..18381 ignored annotation: /number=5 ignored annotation: intron 18382..18637 ignored annotation: /number=5 ignored annotation: exon 18638..18781 ignored annotation: /number=6 ignored annotation: intron 18782..19244 ignored annotation: /number=6 ignored annotation: exon 19245..19311 ignored annotation: /number=7 ignored annotation: intron 19312..20136 ignored annotation: /number=7 ignored annotation: exon 20137..20299 ignored annotation: /number=8 ignored annotation: intron 20300..20390 ignored annotation: /number=8 ignored annotation: exon 20391..20481 ignored annotation: /number=9 ignored annotation: intron 20482..24566 ignored annotation: /number=9 ignored annotation: exon 24567..24665 ignored annotation: /number=10 ignored annotation: intron 24666..29670 ignored annotation: /number=10 ignored annotation: exon 29671..29772 ignored annotation: /number=11 ignored annotation: intron 29773..29906 ignored annotation: /number=11 ignored annotation: exon 29907..30962 ignored annotation: /number=12 ignored annotation: BASE COUNT 8594 a 7026 c 7405 g 9326 t // ** orig/raws/HUMLHDC:682: missing "mRNA" entry === HUMLYL1B === locus = HUMLYL1B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="19p13.2" ignored annotation: exon 567..911 ignored annotation: /gene="LYL1" ignored annotation: /note="G00-120-158" ignored annotation: /number=1 ignored annotation: gene 567..4261 ignored annotation: /gene="LYL1" ignored annotation: intron 912..2218 ignored annotation: /gene="LYL1" ignored annotation: /note="G00-120-158" ignored annotation: /number=1 ignored annotation: exon 2219..2572 ignored annotation: /gene="LYL1" ignored annotation: /note="first expressed exon; G00-120-158" ignored annotation: /number=2 CDS = 2277..2572,2660..2751,3555..3970 ignored annotation: /gene="LYL1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386861" ignored annotation: /db_xref="GDB:G00-120-158" translation = MTEKAEMVCAPSPAPAPPPKPASPGPPQVEEVGHRGGSSPPRLPPGVPVISLGHSRPPGVAMPTTELGTLRPPLLQLSTLGTAPPTLALHYHPHPFLNSVYIGPAGPFSIFPSSRLKRRPSHCELDLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAALAAGPTPPGPRKRPVHRVPDDGPRRGSGRRAEAAARSQPAPPADPDGSPGGAARPIKMEQTALSPEVR ignored annotation: intron 2573..2659 ignored annotation: /gene="LYL1" ignored annotation: /note="G00-120-158" ignored annotation: /number=2 ignored annotation: exon 2660..2751 ignored annotation: /gene="LYL1" ignored annotation: /note="G00-120-158" ignored annotation: /number=3 ignored annotation: intron 2752..3554 ignored annotation: /gene="LYL1" ignored annotation: /note="G00-120-158" ignored annotation: /number=3 ignored annotation: exon 3555..4261 ignored annotation: /gene="LYL1" ignored annotation: /note="G00-120-158" ignored annotation: /number=4 ignored annotation: BASE COUNT 936 a 1408 c 1430 g 795 t // ** orig/raws/HUMLYL1B:148: missing "mRNA" entry === HUMLYTOXBB === locus = HUMLYTOXBB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="MANN DR7 homozygous cell typing line" mRNA = 2764..2933,3330..3375,3559..3630,4026..4631 ignored annotation: /product="lymphotoxin-beta" ignored annotation: exon 2764..2933 ignored annotation: /number=1 ignored annotation: /product="lymphotoxin-beta" CDS = 2772..2933,3330..3375,3559..3630,4026..4480 ignored annotation: /note="The 3' end of this gene lies 2.23 kb from the 3' ignored annotation: end of the tumor necrosis factor gene" ignored annotation: /codon_start=1 ignored annotation: /product="lymphotoxin-beta" ignored annotation: /db_xref="PID:g292279" translation = MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETADPGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGAVMVG ignored annotation: intron 2934..3329 ignored annotation: /number=1 ignored annotation: exon 3330..3375 ignored annotation: /number=2 ignored annotation: /product="lymphotoxin-beta" ignored annotation: intron 3376..3558 ignored annotation: /number=2 ignored annotation: exon 3559..3630 ignored annotation: /number=3 ignored annotation: /product="lymphotoxin-beta" ignored annotation: intron 3631..4025 ignored annotation: /number=3 ignored annotation: exon 4026..4631 ignored annotation: /number=4 ignored annotation: /product="lymphotoxin-beta" ignored annotation: BASE COUNT 1302 a 1730 c 1618 g 1655 t mRNA range 2764..2933 mRNA range 3330..3375 mRNA range 3559..3630 mRNA range 4026..4631 CDS range 2772..2933 CDS range 3330..3375 CDS range 3559..3630 CDS range 4026..4480 seq_ini = 1 seq_fin = 6305 i = 4480 last codon bas = gg[tga]ggg last codon lab = EF[DEF]YYY === HUMMCHEMP === locus = HUMMCHEMP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon <598..673 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein" ignored annotation: /number=1 ignored annotation: gene 598..2080 ignored annotation: /gene="SCYA2" CDS = 598..673,1472..1589,1975..2080 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g487124" translation = MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT ignored annotation: exon 598..673 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein" ignored annotation: /number=1 ignored annotation: intron 674..1471 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein intron A" ignored annotation: exon 1472..1589 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein" ignored annotation: /number=2 ignored annotation: intron 1590..1974 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein intron B" ignored annotation: exon 1975..>2080 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein" ignored annotation: /number=3 ignored annotation: exon 1975..2080 ignored annotation: /gene="SCYA2" ignored annotation: /note="monocyte chemotactic protein" ignored annotation: /number=3 ignored annotation: BASE COUNT 700 a 727 c 565 g 781 t 3 others 2581 cnntntcttc ctccactggg tggtctcctc tgagtctccg gtagaagaat ctttatggca ** orig/raws/HUMMCHEMP:100: invalid base letter "n" === HUMMGPA === locus = HUMMGPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="12" ignored annotation: /cell_type="leukocyte" ignored annotation: CAAT_signal complement(2868..2872) ignored annotation: /gene="MGP" ignored annotation: gene complement(2868..7678) ignored annotation: /gene="MGP" ignored annotation: CAAT_signal 3276..3280 ignored annotation: /gene="MGP" ignored annotation: TATA_signal 3358..3366 ignored annotation: /gene="MGP" ignored annotation: exon 3399..3515 ignored annotation: /gene="MGP" ignored annotation: /number=1 ignored annotation: sig_peptide 3455..3511 ignored annotation: /gene="MGP" ignored annotation: /product="matrix Gla protein" CDS = 3455..3515,5060..5092,6258..6333,7025..7166 ignored annotation: /gene="MGP" ignored annotation: /note="The penultimate residue in human MGP is threonine ignored annotation: in the gene sequence (ACC, this entry) and alanine in the ignored annotation: previously reported cDNA sequence (GCC, GenBank Accession ignored annotation: Number X07362). This difference is due to polymorphism in ignored annotation: the MGP gene, since it is now clear that EST sequences ignored annotation: from some cDNA libraries predict a penultimate alanine ignored annotation: while EST sequences from other libraries predict ignored annotation: threonine" ignored annotation: /codon_start=1 ignored annotation: /product="matrix Gla protein" ignored annotation: /db_xref="PID:g187591" translation = MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGTK ignored annotation: mat_peptide join(3512..3515,5060..5092,6258..6333,7025..7163) ignored annotation: /gene="MGP" ignored annotation: /product="matrix Gla protein" ignored annotation: intron 3516..5059 ignored annotation: /gene="MGP" ignored annotation: /number=1 ignored annotation: exon 5060..5092 ignored annotation: /gene="MGP" ignored annotation: /number=2 ignored annotation: intron 5093..6257 ignored annotation: /gene="MGP" ignored annotation: /number=2 ignored annotation: repeat_unit complement(5470..5788) ignored annotation: /gene="MGP" ignored annotation: /rpt_family="Alu" ignored annotation: exon 6258..6333 ignored annotation: /gene="MGP" ignored annotation: /number=3 ignored annotation: intron 6334..7024 ignored annotation: /gene="MGP" ignored annotation: /number=3 ignored annotation: repeat_unit complement(6679..6888) ignored annotation: /gene="MGP" ignored annotation: exon 7025..>7166 ignored annotation: /gene="MGP" ignored annotation: /number=4 ignored annotation: polyA_signal 7389..7394 ignored annotation: /gene="MGP" ignored annotation: repeat_unit 7489..7678 ignored annotation: /gene="MGP" ignored annotation: BASE COUNT 2303 a 1580 c 1470 g 2381 t // ** orig/raws/HUMMGPA:219: missing "mRNA" entry === HUMMHCD8A === locus = HUMMHCD8A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="2p12" ignored annotation: prim_transcript <1..>7319 ignored annotation: /note="MHC CD8 alpha-chain mRNA and introns" ignored annotation: misc_feature 238..256 ignored annotation: /note="initiator-like sequence" ignored annotation: misc_feature 476..485 ignored annotation: /note="Tcr v-beta decamer-like sequence" ignored annotation: gene 619..667 ignored annotation: /gene="CD8A" CDS = 619..667,763..1116,1700..1810,2017..2127,2890..2920,5504..5555 ignored annotation: /partial ignored annotation: /note="MHC CD8 alpha-chain (Leu-2/T8)" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386908" translation = MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV ignored annotation: exon <619..667 ignored annotation: /gene="CD8A" ignored annotation: /note="MHC CD8 alpha-chain (Leu-2/T8); G00-120-581" ignored annotation: /number=1 ignored annotation: intron 668..762 ignored annotation: /note="CD8 alpha-chain intron A" ignored annotation: exon 763..1116 ignored annotation: /number=2 ignored annotation: intron 1117..1699 ignored annotation: /note="CD8 alpha-chain intron B" ignored annotation: exon 1700..1810 ignored annotation: /number=3 ignored annotation: intron 1811..2016 ignored annotation: /note="CD8 intron C" ignored annotation: exon 2017..2127 ignored annotation: /number=4 ignored annotation: intron 2128..2889 ignored annotation: /note="CD8 intron D" ignored annotation: exon 2890..2920 ignored annotation: /number=5 ignored annotation: intron 2921..5503 ignored annotation: /note="CD8 intron E" ignored annotation: exon 5504..>5555 ignored annotation: /note="MHC CD8 alpha-chain (Leu-2/T8)" ignored annotation: /number=6 ignored annotation: BASE COUNT 1690 a 1933 c 1837 g 1856 t 3 others 1081 tgtacttcag ccacttcgtg ccggtcttcc tgccaggtcc gcgcgccggg ttgcnncacc ** orig/raws/HUMMHCD8A:88: invalid base letter "n" === HUMMHDC3B === locus = HUMMHDC3B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda-42" ignored annotation: /cell_line="WT49 (DR3,3)" ignored annotation: /cell_type="lymphoblastoid" ignored annotation: prim_transcript 646..7793 ignored annotation: /note="HLA-DC3-beta mRNA (alt.)" ignored annotation: prim_transcript 649..7793 ignored annotation: /note="HLA-DC3-beta mRNA (alt.)" ignored annotation: prim_transcript 652..7793 ignored annotation: /note="HLA-DC3-beta mRNA (alt.)" CDS = 705..813,2235..2504,5395..5676,6193..6303,7421..7434 ignored annotation: /note="prepeptide" ignored annotation: /codon_start=1 ignored annotation: /product="MHC HLA-DC3-beta" ignored annotation: /db_xref="PID:g386916" translation = MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH ignored annotation: sig_peptide 705..800 ignored annotation: /note="MHC HLA-DC3-beta signal peptide" ignored annotation: exon <705..813 ignored annotation: /note="MHC HLA-DC3-beta prepeptide" ignored annotation: /number=1 ignored annotation: intron 814..2234 ignored annotation: /note="HLA-DC3-beta intron A" ignored annotation: exon 2235..2504 ignored annotation: /number=2 ignored annotation: intron 2505..5394 ignored annotation: /note="HLA-DC3-beta intron B" ignored annotation: exon 5395..5676 ignored annotation: /number=3 ignored annotation: intron 5677..6192 ignored annotation: /note="HLA-DC3-beta intron C" ignored annotation: exon 6193..6303 ignored annotation: /number=4 ignored annotation: intron 6304..7420 ignored annotation: /note="HLA-DC3-beta intron D" ignored annotation: exon 7421..>7434 ignored annotation: /note="MHC HLA-DC3-beta prepeptide" ignored annotation: /number=5 ignored annotation: BASE COUNT 2083 a 1865 c 1912 g 2230 t // ** orig/raws/HUMMHDC3B:201: missing "mRNA" entry === HUMMIF === locus = HUMMIF ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 1076..1280,1470..1642,1738..1920 ignored annotation: /gene="MIF" ignored annotation: gene join(1076..1280,1470..1642,1738..1920) ignored annotation: /gene="MIF" ignored annotation: exon 1076..1280 ignored annotation: /gene="MIF" ignored annotation: /number=1 CDS = 1173..1280,1470..1642,1738..1804 ignored annotation: /gene="MIF" ignored annotation: /codon_start=1 ignored annotation: /product="macrophage migration inhibitory factor" ignored annotation: /db_xref="PID:g307285" translation = MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA ignored annotation: intron 1281..1469 ignored annotation: /gene="MIF" ignored annotation: /number=1 ignored annotation: exon 1470..1642 ignored annotation: /gene="MIF" ignored annotation: /number=2 ignored annotation: intron 1643..1737 ignored annotation: /gene="MIF" ignored annotation: /number=2 ignored annotation: exon 1738..1920 ignored annotation: /gene="MIF" ignored annotation: /number=3 ignored annotation: BASE COUNT 392 a 657 c 717 g 401 t mRNA range 1076..1280 mRNA range 1470..1642 mRNA range 1738..1920 CDS range 1173..1280 CDS range 1470..1642 CDS range 1738..1804 seq_ini = 1 seq_fin = 2167 i = 1804 last codon bas = cc[taa]gag last codon lab = EF[DEF]YYY === HUMMIS === locus = HUMMIS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="chmis33" ignored annotation: /map="174 bp upstream of AflII site" ignored annotation: prim_transcript 201..2944 ignored annotation: /note="MIS mRNA" CDS = 211..622,1215..1357,1530..1638,1727..1886,1977..2835 ignored annotation: /codon_start=1 ignored annotation: /product="prepro-Mullerian inhibiting substance" ignored annotation: /db_xref="PID:g386953" translation = MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGIPQEPLCLVALGGDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGAWLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAGLPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHRCFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRALRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDPAPLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGDPLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIPETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLSEERISAHHVPNMVATECGCR ignored annotation: exon <211..622 ignored annotation: /note="prepro-Mullerian inhibiting substance" ignored annotation: /number=1 ignored annotation: sig_peptide 211..261 ignored annotation: /note="Mullerian inhibiting substance signal peptide (see ignored annotation: comment)" ignored annotation: mat_peptide join(286..622,1215..1357,1530..1638,1727..1886,1977..2832) ignored annotation: /note="Mullerian inhibiting substance" ignored annotation: intron 623..1214 ignored annotation: /note="MIS cds intron A" ignored annotation: exon 1215..1357 ignored annotation: /number=2 ignored annotation: intron 1358..1529 ignored annotation: /note="MIS cds intron B" ignored annotation: exon 1530..1638 ignored annotation: /number=3 ignored annotation: intron 1639..1726 ignored annotation: /note="MIS cds intron C" ignored annotation: exon 1727..1886 ignored annotation: /number=4 ignored annotation: intron 1887..1976 ignored annotation: /note="MIS cds intron D" ignored annotation: exon 1977..>2835 ignored annotation: /note="prepro-Mullerian inhibiting substance" ignored annotation: /number=5 ignored annotation: BASE COUNT 433 a 1140 c 1063 g 464 t // ** orig/raws/HUMMIS:128: missing "mRNA" entry === HUMMKXX === locus = HUMMKXX ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /tissue_lib="FIXII, Stratagene catalog #946203" ignored annotation: prim_transcript 994..3091 ignored annotation: /gene="MK" ignored annotation: exon 994..1039 ignored annotation: /gene="MK" ignored annotation: /number=1 ignored annotation: intron 1040..1337 ignored annotation: /gene="MK" ignored annotation: /number=1 ignored annotation: exon 1338..1414 ignored annotation: /gene="MK" ignored annotation: /number=2 ignored annotation: gene join(1339..1414,1569..1736,1857..2018,2736..2761) ignored annotation: /gene="MK" ignored annotation: sig_peptide 1339..1404 ignored annotation: /gene="MK" CDS = 1339..1414,1569..1736,1857..2018,2736..2761 ignored annotation: /gene="MK" ignored annotation: /codon_start=1 ignored annotation: /product="retinoic acid inducible factor" ignored annotation: /db_xref="PID:g188571" translation = MQHRGFLLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSKDCGVGFREGTCGAQTQRIRCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPCTPKTKAKAKAKKGKGKD ignored annotation: mat_peptide join(1405..1414,1569..1736,1857..2018,2736..2758) ignored annotation: /gene="MK" ignored annotation: /product="retinoic acid inducible factor" ignored annotation: intron 1415..1568 ignored annotation: /gene="MK" ignored annotation: /number=2 ignored annotation: exon 1569..1736 ignored annotation: /gene="MK" ignored annotation: /number=3 ignored annotation: intron 1737..1856 ignored annotation: /gene="MK" ignored annotation: /number=3 ignored annotation: exon 1857..2018 ignored annotation: /gene="MK" ignored annotation: /number=4 ignored annotation: intron 2019..2735 ignored annotation: /gene="MK" ignored annotation: /number=4 ignored annotation: exon 2736..3091 ignored annotation: /gene="MK" ignored annotation: /number=5 ignored annotation: polyA_signal 3044..3049 ignored annotation: /gene="MK" ignored annotation: polyA_signal 3066..3071 ignored annotation: /gene="MK" ignored annotation: polyA_site 3091 ignored annotation: BASE COUNT 602 a 997 c 1169 g 540 t // ** orig/raws/HUMMKXX:132: missing "mRNA" entry === HUMMRP14A === locus = HUMMRP14A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 1001..3825 ignored annotation: /note="MRP14 mRNA and introns" ignored annotation: intron 1029..1415 ignored annotation: /note="MRP14, intron A" CDS = 1431..1580,3448..3642 ignored annotation: /partial ignored annotation: /note="migration inhibitory factor-related protein 14" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386958" translation = MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP ignored annotation: exon <1431..1580 ignored annotation: /note="migration inhibitory factor-related protein 14" ignored annotation: /number=2 ignored annotation: intron 1581..3447 ignored annotation: /note="MRP14, intron B" ignored annotation: exon 3448..>3642 ignored annotation: /note="migration inhibitory factor-related protein 14" ignored annotation: /number=3 ignored annotation: BASE COUNT 1099 a 1203 c 1159 g 978 t // ** orig/raws/HUMMRP14A:117: missing "mRNA" entry === HUMMRP8A === locus = HUMMRP8A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 1501..2542 ignored annotation: /note="MRP8 mRNA and introns" ignored annotation: intron 1534..2017 ignored annotation: /note="MRP8, intron A" CDS = 2041..2181,2332..2472 ignored annotation: /partial ignored annotation: /note="migration inhibitory factor-related protein 8" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386959" translation = MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE ignored annotation: exon <2041..2181 ignored annotation: /note="migration inhibitory factor-related protein 8" ignored annotation: intron 2182..2331 ignored annotation: /note="MRP8, intron B" ignored annotation: exon 2332..>2472 ignored annotation: /note="migration inhibitory factor-related protein 8" ignored annotation: /number=3 ignored annotation: BASE COUNT 1037 a 950 c 1024 g 1184 t // ** orig/raws/HUMMRP8A:111: missing "mRNA" entry === HUMN79E2 === locus = HUMN79E2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="22" ignored annotation: /clone="N79E2" ignored annotation: /clone_lib="LL22NC03" ignored annotation: /map="22q12" ignored annotation: repeat_region complement(1722..2004) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(4523..4809) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 5871..6153 ignored annotation: /rpt_family="ALU" ignored annotation: gene 10611..28017 ignored annotation: /gene="H_N79E2.1" CDS = 10611..10652,27880..28017 ignored annotation: /gene="H_N79E2.1" ignored annotation: /note="coded for by human cDNA R97618" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g1592828" translation = MSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIGKISCKH ignored annotation: repeat_region complement(11187..11476) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(11541..11619) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(11970..12162) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(13390..13451) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region 14971..15262 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(15963..16254) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(19850..19896) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(20283..20878) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 27442..27734 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(28371..28660) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region 29960..30250 ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(34792..35444) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(35854..35886) ignored annotation: /rpt_family="L1" ignored annotation: repeat_region complement(35905..36183) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(36589..36875) ignored annotation: /rpt_family="ALU" ignored annotation: repeat_region complement(36886..38907) ignored annotation: /rpt_family="L1" ignored annotation: BASE COUNT 9073 a 8707 c 10372 g 11531 t // ** orig/raws/HUMN79E2:780: missing "mRNA" entry === HUMNKG5PRO === locus = HUMNKG5PRO ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /tissue_lib="Human placental in lambda-FIXII" ignored annotation: exon 2082..2261 ignored annotation: /gene="NKG5" ignored annotation: /number=1 ignored annotation: gene join(2210..2261,3111..3214,3749..3847,5296..5467, ignored annotation: 6353..6363) ignored annotation: /gene="NKG5" CDS = 2210..2261,3111..3214,3749..3847,5296..5467,6353..6363 ignored annotation: /gene="NKG5" ignored annotation: /codon_start=1 ignored annotation: /product="NKG5 protein" ignored annotation: /db_xref="PID:g189230" translation = MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETAQQICEDLRLCIPSTGPL ignored annotation: intron 2262..3110 ignored annotation: /gene="NKG5" ignored annotation: /note="intron 1" ignored annotation: exon 3111..3214 ignored annotation: /gene="NKG5" ignored annotation: /number=2 ignored annotation: intron 3215..3748 ignored annotation: /gene="NKG5" ignored annotation: /note="intron 2" ignored annotation: exon 3749..3847 ignored annotation: /gene="NKG5" ignored annotation: /number=3 ignored annotation: intron 3848..5295 ignored annotation: /gene="NKG5" ignored annotation: /note="intron 3" ignored annotation: exon 5296..5467 ignored annotation: /gene="NKG5" ignored annotation: /number=4 ignored annotation: intron 5468..6352 ignored annotation: /gene="NKG5" ignored annotation: /note="intron 4" ignored annotation: exon 6353..6535 ignored annotation: /gene="NKG5" ignored annotation: /number=5 ignored annotation: BASE COUNT 1521 a 1817 c 1806 g 1602 t // ** orig/raws/HUMNKG5PRO:178: missing "mRNA" entry === HUMNUCLEO === locus = HUMNUCLEO ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="2q12-qter" ignored annotation: exon 1070..1198 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=1 ignored annotation: /product="nucleolin" ignored annotation: gene join(1070..1198,2159..2275,3439..3916,4587..4784, ignored annotation: 4889..4975,5160..5301,6307..6431,7037..7160,7620..7777, ignored annotation: 8292..8415,8652..8785,9279..9405,9792..10006,10140..10499) ignored annotation: /gene="NCL" mRNA = 1070..1198,2159..2275,3439..3916,4587..4784,4889..4975,5160..5301,6307..6431,7037..7160,7620..7777,8292..8415,8652..8785,9279..9405,9792..10006,10140..10499 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /product="nucleolin" CDS = 1181..1198,2159..2275,3439..3916,4587..4784,4889..4975,5160..5301,6307..6431,7037..7160,7620..7777,8292..8415,8652..8785,9279..9405,9792..10006,10140..10216 ignored annotation: /gene="NCL" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-125-908" ignored annotation: /product="nucleolin" ignored annotation: /db_xref="PID:g189306" translation = MVKLAKAGKNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATSAKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQGKKTKFE ignored annotation: exon 2159..2275 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=2 ignored annotation: /product="nucleolin" ignored annotation: exon 3439..3916 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=3 ignored annotation: /product="nucleolin" ignored annotation: exon 4587..4784 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=4 ignored annotation: /product="nucleolin" ignored annotation: exon 4889..4975 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=5 ignored annotation: /product="nucleolin" ignored annotation: exon 5160..5301 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=6 ignored annotation: /product="nucleolin" ignored annotation: exon 6307..6431 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=7 ignored annotation: /product="nucleolin" ignored annotation: exon 7037..7160 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=8 ignored annotation: /product="nucleolin" ignored annotation: exon 7620..7777 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=9 ignored annotation: /product="nucleolin" ignored annotation: exon 8292..8415 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=10 ignored annotation: /product="nucleolin" ignored annotation: exon 8652..8785 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=11 ignored annotation: /product="nucleolin" ignored annotation: exon 9279..9405 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=12 ignored annotation: /product="nucleolin" ignored annotation: exon 9792..10006 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=13 ignored annotation: /product="nucleolin" ignored annotation: exon 10140..10499 ignored annotation: /gene="NCL" ignored annotation: /note="G00-125-908" ignored annotation: /number=14 ignored annotation: /product="nucleolin" ignored annotation: BASE COUNT 2873 a 2245 c 2723 g 3101 t mRNA range 1070..1198 mRNA range 2159..2275 mRNA range 3439..3916 mRNA range 4587..4784 mRNA range 4889..4975 mRNA range 5160..5301 mRNA range 6307..6431 mRNA range 7037..7160 mRNA range 7620..7777 mRNA range 8292..8415 mRNA range 8652..8785 mRNA range 9279..9405 mRNA range 9792..10006 mRNA range 10140..10499 CDS range 1181..1198 CDS range 2159..2275 CDS range 3439..3916 CDS range 4587..4784 CDS range 4889..4975 CDS range 5160..5301 CDS range 6307..6431 CDS range 7037..7160 CDS range 7620..7777 CDS range 8292..8415 CDS range 8652..8785 CDS range 9279..9405 CDS range 9792..10006 CDS range 10140..10216 seq_ini = 1 seq_fin = 10942 i = 10216 last codon bas = aa[tag]ctt last codon lab = EF[DEF]YYY === HUMOP18A === locus = HUMOP18A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukemia" ignored annotation: exon 1131..1176 ignored annotation: /gene="Op18" ignored annotation: /number=1 ignored annotation: gene join(1131..1176,2830..2904,3754..3926,5886..6077, ignored annotation: 6483..7452) ignored annotation: /gene="Op18" mRNA = 1131..1176,2830..2904,3754..3926,5886..6077,6483..7452 ignored annotation: /gene="Op18" ignored annotation: exon 2830..2904 ignored annotation: /gene="Op18" ignored annotation: /number=2 CDS = 2892..2904,3754..3926,5886..6077,6483..6554 ignored annotation: /gene="Op18" ignored annotation: /codon_start=1 ignored annotation: /product="oncoprotein 18" ignored annotation: /db_xref="PID:g189388" translation = MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD ignored annotation: exon 3754..3926 ignored annotation: /gene="Op18" ignored annotation: /EC_number="3" ignored annotation: exon 5886..6077 ignored annotation: /gene="Op18" ignored annotation: /EC_number="4" ignored annotation: exon 6483..7452 ignored annotation: /gene="Op18" ignored annotation: /EC_number="5" ignored annotation: BASE COUNT 1990 a 1724 c 2006 g 2338 t mRNA range 1131..1176 mRNA range 2830..2904 mRNA range 3754..3926 mRNA range 5886..6077 mRNA range 6483..7452 CDS range 2892..2904 CDS range 3754..3926 CDS range 5886..6077 CDS range 6483..6554 seq_ini = 1 seq_fin = 8058 i = 6554 last codon bas = ac[taa]ttt last codon lab = EF[DEF]YYY === HUMP45C17 === locus = HUMP45C17 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="10" ignored annotation: repeat_region 1446..1517 ignored annotation: /note="Alu repeat" ignored annotation: prim_transcript 1779..8437 ignored annotation: /note="P450c17 mRNA and introns" ignored annotation: exon <1839..2135 ignored annotation: /gene="CYP1A1" ignored annotation: /note="cytochrome P450c17, (EC 1.14.99.9)" ignored annotation: /number=1 ignored annotation: gene 1839..2135 ignored annotation: /gene="CYP1A1" ignored annotation: gene join(1839..2135,3804..3942,4176..4405,5068..5154, ignored annotation: 5849..6064,6297..6466,7364..7467,7986..8268) ignored annotation: /gene="CYP17" CDS = 1839..2135,3804..3942,4176..4405,5068..5154,5849..6064,6297..6466,7364..7467,7986..8269 ignored annotation: /partial ignored annotation: /gene="CYP17" ignored annotation: /note="cytochrome P450c17" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386992" translation = MWELVALLLLTLAYLFWPKRRWPGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQAWREAQAEGST ignored annotation: intron 2136..3803 ignored annotation: /note="cytochrome P450c17, intron A" ignored annotation: repeat_region 2722..2927 ignored annotation: /note="Alu repeat" ignored annotation: exon 3804..3942 ignored annotation: /gene="CYP17" ignored annotation: /number=2 ignored annotation: intron 3943..4175 ignored annotation: /note="cytochrome P450c17, intron B" ignored annotation: exon 4176..4405 ignored annotation: /gene="CYP17" ignored annotation: /number=3 ignored annotation: intron 4406..5067 ignored annotation: /note="cytochrome P450c17, intron C" ignored annotation: exon 5068..5154 ignored annotation: /gene="CYP17" ignored annotation: /number=4 ignored annotation: intron 5155..5848 ignored annotation: /note="cytochrome P450c17, intron D" ignored annotation: repeat_region 5406..5598 ignored annotation: /note="Alu repeat" ignored annotation: exon 5849..6064 ignored annotation: /gene="CYP17" ignored annotation: /number=5 ignored annotation: intron 6065..6296 ignored annotation: /note="cytochrome P450c17, intron E" ignored annotation: exon 6297..6466 ignored annotation: /gene="CYP17" ignored annotation: /number=6 ignored annotation: intron 6467..7363 ignored annotation: /note="cytochrome P450c17, intron F" ignored annotation: repeat_region 6696..6907 ignored annotation: /note="Alu repeat" ignored annotation: exon 7364..7467 ignored annotation: /gene="CYP17" ignored annotation: /number=7 ignored annotation: intron 7468..7985 ignored annotation: /note="cytochrome P450c17, intron G" ignored annotation: exon 7986..>8269 ignored annotation: /note="cytochrome P450c17" ignored annotation: /number=8 ignored annotation: BASE COUNT 2057 a 2306 c 2027 g 2159 t // ** orig/raws/HUMP45C17:242: missing "mRNA" entry === HUMPAIA === locus = HUMPAIA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="7q21.3-q22.1" ignored annotation: allele 2488..2490 ignored annotation: /note="ggggg is gggg in allele" ignored annotation: /citation=[2] ignored annotation: prim_transcript 3040..15199 ignored annotation: /note="plasminogen activator-1 mRNA and introns" ignored annotation: intron 3307..4453 ignored annotation: /note="PAI-1, intron A" ignored annotation: gene 4455..4725 ignored annotation: /gene="PAI1" CDS = 4455..4725,6490..6723,7947..8141,9747..9945,11538..11638,11758..11844,13053..13136,13457..13494 ignored annotation: /partial ignored annotation: /note="plasminogen activator-1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g386996" translation = MQMSPALTCLVLGLALVFGEGSAVHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP ignored annotation: exon <4455..4725 ignored annotation: /gene="PAI1" ignored annotation: /note="plasminogen activator-1, (first coding exon)" ignored annotation: /number=2 ignored annotation: intron 4726..6489 ignored annotation: /note="PAI-1, intron B" ignored annotation: exon 6490..6723 ignored annotation: /number=3 ignored annotation: intron 6724..7946 ignored annotation: /note="PAI-1, intron C" ignored annotation: exon 7947..8141 ignored annotation: /number=4 ignored annotation: intron 8142..9746 ignored annotation: /note="PAI-1, intron D" ignored annotation: exon 9747..9945 ignored annotation: /number=5 ignored annotation: intron 9946..11537 ignored annotation: /note="PAI-1, intron E" ignored annotation: exon 11538..11638 ignored annotation: /number=6 ignored annotation: intron 11639..11757 ignored annotation: /note="PAI-1, intron F" ignored annotation: exon 11758..11844 ignored annotation: /number=7 ignored annotation: intron 11845..13052 ignored annotation: /note="PAI-1, intron G" ignored annotation: exon 13053..13136 ignored annotation: /number=8 ignored annotation: intron 13137..13456 ignored annotation: /note="PAI-1, intron H" ignored annotation: exon 13457..>13494 ignored annotation: /note="plasminogen activator-1" ignored annotation: /number=9 ignored annotation: BASE COUNT 4974 a 4406 c 4386 g 3743 t // ** orig/raws/HUMPAIA:388: missing "mRNA" entry === HUMPALC === locus = HUMPALC ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="lambda-HPA1." ignored annotation: /dev_stage="foetus" ignored annotation: /tissue_type="liver" ignored annotation: /tissue_lib="T.Maniatas" ignored annotation: /map="18q11.2-q12.1" ignored annotation: exon 582..676 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=1 ignored annotation: gene 582..7518 ignored annotation: /gene="TTR" CDS = 608..676,1601..1731,3824..3959,7272..7379 ignored annotation: /gene="TTR" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-471" ignored annotation: /product="prealbumin" ignored annotation: /db_xref="PID:g386998" translation = MASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVPGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ignored annotation: sig_peptide 608..667 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: mat_peptide join(668..676,1601..1731,3824..3959,7272..7376) ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /product="prealbumin" ignored annotation: intron 677..1600 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=1 ignored annotation: exon 1601..1731 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=2 ignored annotation: intron 1732..3823 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=2 ignored annotation: repeat_region 3279..3286 ignored annotation: /note="5' insertion target sequence" ignored annotation: /rpt_type=direct ignored annotation: repeat_region 3287..3580 ignored annotation: /rpt_family="Alu" ignored annotation: old_sequence 3297..3299 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: repeat_region 3581..3588 ignored annotation: /note="3' insertion target sequence" ignored annotation: /rpt_type=direct ignored annotation: old_sequence 3636..3638 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: exon 3824..3959 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=3 ignored annotation: intron 3960..7271 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=3 ignored annotation: old_sequence 5164..5166 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: old_sequence 5390..5392 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: repeat_region complement(5737..5746) ignored annotation: /note="3' insertion target sequence" ignored annotation: /rpt_type=direct ignored annotation: repeat_region complement(5747..6047) ignored annotation: /rpt_family="Alu" ignored annotation: old_sequence 5780 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: old_sequence 5907..5909 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: repeat_region complement(6048..6057) ignored annotation: /note="5' insertion target sequence" ignored annotation: /rpt_type=direct ignored annotation: old_sequence 6206..6208 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: old_sequence 7185 ignored annotation: /gene="TTR" ignored annotation: /citation=[1] ignored annotation: exon 7272..7518 ignored annotation: /gene="TTR" ignored annotation: /note="G00-119-471" ignored annotation: /number=4 ignored annotation: old_sequence 7527..7530 ignored annotation: /citation=[1] ignored annotation: BASE COUNT 2234 a 1609 c 1544 g 2232 t // ** orig/raws/HUMPALC:248: missing "mRNA" entry === HUMPAP === locus = HUMPAP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /dev_stage="adult" ignored annotation: /tissue_type="blood" ignored annotation: /map="2" ignored annotation: promoter 1..986 ignored annotation: /gene="PAP" mRNA = 986..1011,1300..1409,1970..2088,2276..2413,3040..3166,3445..3731 ignored annotation: /gene="PAP" ignored annotation: exon 986..1011 ignored annotation: /gene="PAP" ignored annotation: /number=1 ignored annotation: gene join(986..1011,1300..1409,1970..2088,2276..2413, ignored annotation: 3040..3166,3445..3731) ignored annotation: /gene="PAP" ignored annotation: intron 1012..1299 ignored annotation: /gene="PAP" ignored annotation: /number=1 ignored annotation: exon 1300..1409 ignored annotation: /gene="PAP" ignored annotation: /number=2 CDS = 1334..1409,1970..2088,2276..2413,3040..3166,3445..3512 ignored annotation: /gene="PAP" ignored annotation: /codon_start=1 ignored annotation: /product="pancreatitis-associated protein" ignored annotation: /db_xref="PID:g482909" translation = MLPPMALPSVSWMLLSCLMLLSQVQGEEPQRELPSARIRCPKGSKAYGSHCYALFLSPKSWTDADLACQKRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMNYFAWERNPSTISSPGHCASLSRSTAFLRWKDYNCNVRLPYVCKFTD ignored annotation: intron 1410..1969 ignored annotation: /gene="PAP" ignored annotation: /number=2 ignored annotation: exon 1970..2088 ignored annotation: /gene="PAP" ignored annotation: /number=3 ignored annotation: intron 2089..2275 ignored annotation: /gene="PAP" ignored annotation: /number=3 ignored annotation: exon 2276..2413 ignored annotation: /gene="PAP" ignored annotation: /number=4 ignored annotation: intron 2414..3039 ignored annotation: /gene="PAP" ignored annotation: /number=4 ignored annotation: exon 3040..3166 ignored annotation: /gene="PAP" ignored annotation: /number=5 ignored annotation: intron 3167..3444 ignored annotation: /gene="PAP" ignored annotation: /number=5 ignored annotation: exon 3445..3731 ignored annotation: /gene="PAP" ignored annotation: /number=6 ignored annotation: BASE COUNT 1125 a 1121 c 1020 g 1231 t mRNA range 986..1011 mRNA range 1300..1409 mRNA range 1970..2088 mRNA range 2276..2413 mRNA range 3040..3166 mRNA range 3445..3731 CDS range 1334..1409 CDS range 1970..2088 CDS range 2276..2413 CDS range 3040..3166 CDS range 3445..3512 seq_ini = 1 seq_fin = 4497 i = 3512 last codon bas = ac[tag]tgc last codon lab = EF[DEF]YYY === HUMPCBD === locus = HUMPCBD ignored annotation: /organism="Homo sapiens" ignored annotation: /note="(vector lambda EMBL3)" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="HGPCD2" ignored annotation: /clone="HGPCD15" ignored annotation: /map="10q22" mRNA = 4669..4691,7292..7423,7989..8069,9172..9559 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: gene join(4669..4691,7292..7423,7989..8069,9172..9559) ignored annotation: /gene="PCBD" ignored annotation: exon 4669..4691 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: /number=1 CDS = 4689..4691,7292..7423,7989..8069,9172..9270 ignored annotation: /gene="PCBD" ignored annotation: /EC_number="4.2.1.96" ignored annotation: /codon_start=1 ignored annotation: /function="dimerization cofactor of hepatocyte nuclear ignored annotation: factor 1 alpha" ignored annotation: /db_xref="GDB:G00-138-478" ignored annotation: /evidence=experimental ignored annotation: /product="pterin-4a-carbinolamine dehydratase" ignored annotation: /db_xref="PID:g848985" translation = MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT ignored annotation: intron 4692..7291 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: /number=1 ignored annotation: exon 7292..7423 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: /number=2 ignored annotation: intron 7424..7988 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: exon 7989..8069 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: /number=3 ignored annotation: intron 8070..9171 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: /number=3 ignored annotation: exon 9172..9559 ignored annotation: /gene="PCBD" ignored annotation: /note="G00-138-478" ignored annotation: /number=4 ignored annotation: BASE COUNT 3508 a 2858 c 2999 g 3039 t mRNA range 4669..4691 mRNA range 7292..7423 mRNA range 7989..8069 mRNA range 9172..9559 CDS range 4689..4691 CDS range 7292..7423 CDS range 7989..8069 CDS range 9172..9270 seq_ini = 1 seq_fin = 12404 i = 9270 last codon bas = ca[tag]acc last codon lab = EF[DEF]YYY === HUMPCI === locus = HUMPCI ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" mRNA = 2200..2297,7932..8567,10627..10897,11335..11482,12608..13669 ignored annotation: /gene="PCI" ignored annotation: /citation=[2] ignored annotation: exon 2200..2297 ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: /number=1 ignored annotation: /evidence=experimental ignored annotation: gene 2200..13669 ignored annotation: /gene="PCI" ignored annotation: conflict replace(2281,"") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: exon 7932..8567 ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: /number=2 ignored annotation: /evidence=experimental ignored annotation: conflict replace(7943,"t") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] CDS = 7949..8567,10627..10897,11335..11482,12608..12790 ignored annotation: /gene="PCI" ignored annotation: /citation=[2] ignored annotation: /codon_start=1 ignored annotation: /product="plasminogen activator inhibitor 3" ignored annotation: /db_xref="PID:g189678" translation = MQLFLLLCLVLLSPQGASLHRHHPREMKKRVEDLHVGATVAPSSRRDFTFDLYRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVFTSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQRLVFNRPFLMFIVDNNILFLGKVNRP ignored annotation: sig_peptide 7949..8005 ignored annotation: /gene="PCI" ignored annotation: mat_peptide join(8006..8567,10627..10897,11335..11482,12608..12787) ignored annotation: /gene="PCI" ignored annotation: /citation=[2] ignored annotation: /product="plasminogen activator inhibitor 3" ignored annotation: exon 10627..10897 ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: /number=3 ignored annotation: /evidence=experimental ignored annotation: exon 11335..11482 ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: /number=4 ignored annotation: /evidence=experimental ignored annotation: conflict replace(11447,"c") ignored annotation: /gene="PCI" ignored annotation: /citation=[1] ignored annotation: /citation=[3] ignored annotation: exon 12608..13669 ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: /number=5 ignored annotation: /evidence=experimental ignored annotation: conflict replace(12884,"ga") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(12901,"ga") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(12930,"gg") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(12999,"") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(13053,"ga") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(13117,"g") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(13124,"") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: conflict replace(13170,"gc") ignored annotation: /gene="PCI" ignored annotation: /citation=[3] ignored annotation: polyA_site 13669 ignored annotation: /gene="PCI" ignored annotation: BASE COUNT 3933 a 3941 c 3888 g 3809 t mRNA range 2200..2297 mRNA range 7932..8567 mRNA range 10627..10897 mRNA range 11335..11482 mRNA range 12608..13669 CDS range 7949..8567 CDS range 10627..10897 CDS range 11335..11482 CDS range 12608..12790 seq_ini = 1 seq_fin = 15571 i = 12790 last codon bas = cc[tga]ggt last codon lab = EF[DEF]YYY === HUMPCNA === locus = HUMPCNA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="20pter-p12" ignored annotation: misc_signal 748..753 ignored annotation: /note="GC box" ignored annotation: misc_signal 1090..1095 ignored annotation: /note="GC box" ignored annotation: misc_signal 1110..1115 ignored annotation: /note="GC box" ignored annotation: CAAT_signal 1124..1129 ignored annotation: misc_signal 1145..1150 ignored annotation: /note="GC box" ignored annotation: prim_transcript 1268..6191 ignored annotation: /note="PCNA mRNA and introns" ignored annotation: exon <1427..1647 ignored annotation: /gene="PCNA" ignored annotation: /note="proliferating cell nuclear antigen (PCNA)" ignored annotation: /number=1 ignored annotation: gene join(1427..1647,2356..2453,2550..2617,3556..3750, ignored annotation: 5636..5759,5846..5924) ignored annotation: /gene="PCNA" CDS = 1427..1647,2356..2453,2550..2617,3556..3750,5636..5759,5846..5925 ignored annotation: /partial ignored annotation: /gene="PCNA" ignored annotation: /note="proliferating cell nuclear antigen (PCNA)" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-261" ignored annotation: /db_xref="PID:g387005" translation = MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEEGS ignored annotation: intron 1648..2355 ignored annotation: /note="PCNA intron A" ignored annotation: exon 2356..2453 ignored annotation: /gene="PCNA" ignored annotation: /note="proliferating cell nuclear antigen" ignored annotation: intron 2454..2549 ignored annotation: /note="PCNA intron B" ignored annotation: exon 2550..2617 ignored annotation: /gene="PCNA" ignored annotation: /note="proliferating cell nuclear antigen" ignored annotation: /number=3 ignored annotation: intron 2618..3555 ignored annotation: /note="PCNA intron C" ignored annotation: exon 3556..3750 ignored annotation: /gene="PCNA" ignored annotation: /note="proliferating cell nuclear antigen" ignored annotation: /number=4 ignored annotation: intron 3751..5635 ignored annotation: /note="PCNA intron D" ignored annotation: exon 5636..5759 ignored annotation: /gene="PCNA" ignored annotation: /note="proliferating cell nuclear antigen" ignored annotation: /number=5 ignored annotation: intron 5760..5845 ignored annotation: /note="PCNA intron E" ignored annotation: exon 5846..>5925 ignored annotation: /note="proliferating cell nuclear antigen" ignored annotation: /number=6 ignored annotation: BASE COUNT 1756 a 1280 c 1457 g 1847 t // ** orig/raws/HUMPCNA:192: missing "mRNA" entry === HUMPDHAL === locus = HUMPDHAL ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: protein_bind 286..291 ignored annotation: /bound_moiety="SpI" ignored annotation: CAAT_signal 342..346 ignored annotation: protein_bind 370..375 ignored annotation: /bound_moiety="SpI" ignored annotation: TATA_signal 429..434 ignored annotation: prim_transcript 439..16253 ignored annotation: /note="alpha subunit mRNA and introns" ignored annotation: exon 439..619 ignored annotation: /note="alpha subunit exon 1" CDS = 563..619,5841..5900,6372..6545,7709..7835,9500..9591,10908..11000,11767..11922,12107..12178,14064..14131,15318..15426,15888..16052 ignored annotation: /note="alpha subunit" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:d1014824" ignored annotation: /db_xref="PID:g219982" translation = MRKMLAAVSRVLSGASQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS ignored annotation: intron 620..5840 ignored annotation: /note="alpha subunit intron 1" ignored annotation: repeat_unit 1818..2129 ignored annotation: /note="Alu repeat 1" ignored annotation: repeat_unit 5192..5479 ignored annotation: /note="Alu repeat 2" ignored annotation: exon 5841..5900 ignored annotation: /note="alpha subunit exon 2" ignored annotation: intron 5901..6371 ignored annotation: /note="alpha subunit intron 2" ignored annotation: exon 6372..6545 ignored annotation: /note="alpha subunit exon 3" ignored annotation: intron 6546..7708 ignored annotation: /note="alpha subunit intron 3" ignored annotation: repeat_unit 6677..6999 ignored annotation: /note="Alu repeat 3" ignored annotation: exon 7709..7835 ignored annotation: /note="alpha subunit exon 4" ignored annotation: intron 7836..9499 ignored annotation: /note="alpha subunit intron 4" ignored annotation: repeat_unit 8223..8517 ignored annotation: /note="Alu repeat 4" ignored annotation: repeat_unit 8642..8956 ignored annotation: /note="Alu repeat 5" ignored annotation: exon 9500..9591 ignored annotation: /note="alpha subunit exon 5" ignored annotation: intron 9592..10907 ignored annotation: /note="alpha subunit intron 5" ignored annotation: repeat_unit 10387..10648 ignored annotation: /note="Alu repeat 6" ignored annotation: exon 10908..11000 ignored annotation: /note="alpha subunit exon 6" ignored annotation: intron 11001..11766 ignored annotation: /note="alpha subunit intron 6" ignored annotation: exon 11767..11922 ignored annotation: /note="alpha subunit exon 7" ignored annotation: intron 11923..12106 ignored annotation: /note="alpha subunit intron 7" ignored annotation: exon 12107..12178 ignored annotation: /note="alpha subunit exon 8" ignored annotation: intron 12179..14063 ignored annotation: /note="alpha subunit intron 8" ignored annotation: repeat_unit 13559..13809 ignored annotation: /note="Alu repeat 7" ignored annotation: exon 14064..14131 ignored annotation: /note="alpha subunit exon 9" ignored annotation: intron 14132..15317 ignored annotation: /note="alpha subunit intron 9" ignored annotation: exon 15318..15426 ignored annotation: /note="alpha subunit exon 10" ignored annotation: intron 15427..15887 ignored annotation: /note="alpha subunit intron 10" ignored annotation: exon 15888..16253 ignored annotation: /note="alpha subunit exon 11" ignored annotation: polyA_signal 16221..16226 ignored annotation: BASE COUNT 4377 a 3680 c 3957 g 5058 t // ** orig/raws/HUMPDHAL:398: missing "mRNA" entry === HUMPDHBET === locus = HUMPDHBET ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: repeat_unit 475..753 ignored annotation: /note="Alu repeat 1" ignored annotation: CAAT_signal 2233..2237 ignored annotation: prim_transcript 2315..8623 ignored annotation: /note="beta subunit mRNA and introns" ignored annotation: exon 2315..2485 ignored annotation: /note="beta subunit exon 1" CDS = 2444..2485,2568..2621,4267..4374,4458..4520,4622..4657,5311..5596,6016..6126,6453..6544,7639..7780,8074..8219 ignored annotation: /note="beta subunit" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:d1014826" ignored annotation: /db_xref="PID:g219984" translation = MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFLPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI ignored annotation: intron 2486..2567 ignored annotation: /note="beta subunit intron 1" ignored annotation: exon 2568..2621 ignored annotation: /note="beta subunit exon 2" ignored annotation: intron 2622..4266 ignored annotation: /note="beta subunit intron 2" ignored annotation: repeat_unit 3543..3836 ignored annotation: /note="Alu repeat 2" ignored annotation: exon 4267..4374 ignored annotation: /note="beta subunit exon 3" ignored annotation: intron 4375..4457 ignored annotation: /note="beta subunit intron 3" ignored annotation: exon 4458..4520 ignored annotation: /note="beta subunit exon 4" ignored annotation: intron 4521..4621 ignored annotation: /note="beta subunit intron 4" ignored annotation: exon 4622..4657 ignored annotation: /note="beta subunit exon 5" ignored annotation: intron 4658..5310 ignored annotation: /note="beta subunit intron 5" ignored annotation: exon 5311..5596 ignored annotation: /note="beta subunit exon 6" ignored annotation: intron 5597..6015 ignored annotation: /note="beta subunit intron 6" ignored annotation: exon 6016..6126 ignored annotation: /note="beta subunit exon 7" ignored annotation: intron 6127..6452 ignored annotation: /note="beta subunit intron 7" ignored annotation: exon 6453..6544 ignored annotation: /note="beta subunit exon 8" ignored annotation: intron 6545..7638 ignored annotation: /note="beta subunit intron 8" ignored annotation: repeat_unit 7097..7385 ignored annotation: /note="Alu repeat 3" ignored annotation: exon 7639..7780 ignored annotation: /note="beta subunit exon 9" ignored annotation: intron 7781..8073 ignored annotation: /note="beta subunit intron 9" ignored annotation: exon 8074..8623 ignored annotation: /note="beta subunit exon 10" ignored annotation: polyA_signal 8602..8607 ignored annotation: BASE COUNT 2291 a 2041 c 1997 g 2540 t // ** orig/raws/HUMPDHBET:246: missing "mRNA" entry === HUMPEPYYA === locus = HUMPEPYYA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /sex="male" ignored annotation: /tissue_type="lymphocyte" ignored annotation: TATA_signal 528..532 ignored annotation: exon 556..646 ignored annotation: /number=1 ignored annotation: intron 647..1012 ignored annotation: /number=1 ignored annotation: exon 1013..1200 ignored annotation: /number=2 CDS = 1013..1200,1307..1387,1516..1540 ignored annotation: /codon_start=1 ignored annotation: /product="peptide YY" ignored annotation: /db_xref="PID:g409745" translation = MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVTRQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW ignored annotation: intron 1201..1306 ignored annotation: /number=2 ignored annotation: exon 1307..1387 ignored annotation: /number=3 ignored annotation: intron 1388..1515 ignored annotation: /number=3 ignored annotation: exon 1516..1756 ignored annotation: /number=4 ignored annotation: polyA_signal 1733..1738 ignored annotation: BASE COUNT 465 a 733 c 762 g 418 t // ** orig/raws/HUMPEPYYA:86: missing "mRNA" entry === HUMPF4V1A === locus = HUMPF4V1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: misc_feature 58..66 ignored annotation: /gene="PF4var1" ignored annotation: /note="T-rich region" ignored annotation: promoter 184..190 ignored annotation: /gene="PF4var1" ignored annotation: exon 214..380 ignored annotation: /gene="PF4var1" ignored annotation: /number=1 ignored annotation: /product="platelet factor 4" ignored annotation: prim_transcript 214..1411 ignored annotation: /gene="PF4var1" ignored annotation: /note="exons and introns" mRNA = 214..380,699..825,951..1411 ignored annotation: /gene="PF4var1" ignored annotation: /product="platelet factor 4" ignored annotation: gene join(214..380,699..825,951..1411) ignored annotation: /gene="PF4var1" ignored annotation: sig_peptide join(281..380,699..700) ignored annotation: /gene="PF4var1" ignored annotation: /note="leader sequence" CDS = 281..380,699..825,951..1038 ignored annotation: /gene="PF4var1" ignored annotation: /note="precursor protein" ignored annotation: /codon_start=1 ignored annotation: /product="platelet factor 4" ignored annotation: /db_xref="PID:g292390" translation = MSSAARSRLTRATRQEMLFLALLLLPVVVAFARAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES ignored annotation: intron 381..698 ignored annotation: /gene="PF4var1" ignored annotation: /number=1 ignored annotation: exon 699..825 ignored annotation: /gene="PF4var1" ignored annotation: /number=2 ignored annotation: /product="platelet factor 4" ignored annotation: mat_peptide join(701..825,951..1035) ignored annotation: /gene="PF4var1" ignored annotation: /product="platelet factor 4" ignored annotation: intron 826..950 ignored annotation: /gene="PF4var1" ignored annotation: /number=2 ignored annotation: exon 951..1411 ignored annotation: /gene="PF4var1" ignored annotation: /number=3 ignored annotation: /product="platelet factor 4" ignored annotation: polyA_signal 1126..1131 ignored annotation: /gene="PF4var1" ignored annotation: polyA_signal 1258..1263 ignored annotation: /gene="PF4var1" ignored annotation: misc_feature 1303..1308 ignored annotation: /gene="PF4var1" ignored annotation: /note="GT cluster" ignored annotation: polyA_signal 1371..1377 ignored annotation: /gene="PF4var1" ignored annotation: BASE COUNT 363 a 380 c 333 g 392 t mRNA range 214..380 mRNA range 699..825 mRNA range 951..1411 CDS range 281..380 CDS range 699..825 CDS range 951..1038 seq_ini = 1 seq_fin = 1468 i = 1038 last codon bas = gt[tag]cta last codon lab = EF[DEF]YYY === HUMPGAMMG === locus = HUMPGAMMG ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="7p13-p12" ignored annotation: prim_transcript 921..3751 ignored annotation: /note="PGAM-M mRNA and introns" ignored annotation: gene join(963..1376,1480..1660,3549..3714) ignored annotation: /gene="PGAM2" ignored annotation: exon <963..1376 ignored annotation: /gene="PGAM2" ignored annotation: /note="phosphoglycerate mutase, (EC 2.7.5.3)" ignored annotation: /number=1 CDS = 963..1376,1480..1660,3549..3715 ignored annotation: /partial ignored annotation: /gene="PGAM2" ignored annotation: /note="phosphoglycerate mutase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-280" ignored annotation: /db_xref="PID:g387016" translation = MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVLKRAIPTLWAILDGTDQMWLPVVRTCRFNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFDIPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKRVLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEETVRKAMEAVAAQGKAK ignored annotation: intron 1377..1479 ignored annotation: /note="PGAM-M intron A" ignored annotation: exon 1480..1660 ignored annotation: /gene="PGAM2" ignored annotation: /number=2 ignored annotation: intron 1661..3548 ignored annotation: /note="PGAM-M intron B" ignored annotation: exon 3549..>3715 ignored annotation: /note="phosphoglycerate mutase" ignored annotation: /number=3 ignored annotation: BASE COUNT 806 a 1111 c 1089 g 765 t // ** orig/raws/HUMPGAMMG:119: missing "mRNA" entry === HUMPHOSA === locus = HUMPHOSA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 1..4892 ignored annotation: /gene="PCK1" ignored annotation: exon <1..232 ignored annotation: /gene="PCK1" ignored annotation: /note="This partially untranslated exon corresponds to ignored annotation: exon 2 of the reported rat gene. Rat exon 1 is ignored annotation: untranslated" ignored annotation: /citation=[1] ignored annotation: /number=1 CDS = 9..232,668..849,1290..1493,1622..1809,2160..2322,2763..2987,3077..3208,3633..3728,3943..4397 ignored annotation: /gene="PCK1" ignored annotation: /codon_start=1 ignored annotation: /function="gluconeogenesis" ignored annotation: /product="phosphoenolpyruvate carboxykinase" ignored annotation: /db_xref="PID:g307333" translation = MPPQLQNGLNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRNASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKSNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQM ignored annotation: intron 233..667 ignored annotation: /gene="PCK1" ignored annotation: /number=1 ignored annotation: exon 668..849 ignored annotation: /gene="PCK1" ignored annotation: /number=2 ignored annotation: intron 850..1289 ignored annotation: /gene="PCK1" ignored annotation: /number=2 ignored annotation: exon 1290..1493 ignored annotation: /gene="PCK1" ignored annotation: /number=3 ignored annotation: intron 1494..1621 ignored annotation: /gene="PCK1" ignored annotation: /number=3 ignored annotation: exon 1622..1809 ignored annotation: /gene="PCK1" ignored annotation: /number=4 ignored annotation: intron 1810..2159 ignored annotation: /gene="PCK1" ignored annotation: /number=4 ignored annotation: exon 2160..2322 ignored annotation: /gene="PCK1" ignored annotation: /number=5 ignored annotation: intron 2323..2762 ignored annotation: /gene="PCK1" ignored annotation: /number=5 ignored annotation: exon 2763..2987 ignored annotation: /gene="PCK1" ignored annotation: /number=6 ignored annotation: intron 2988..3076 ignored annotation: /gene="PCK1" ignored annotation: /number=6 ignored annotation: exon 3077..3208 ignored annotation: /gene="PCK1" ignored annotation: /number=7 ignored annotation: intron 3209..3632 ignored annotation: /gene="PCK1" ignored annotation: /number=7 ignored annotation: exon 3633..3728 ignored annotation: /gene="PCK1" ignored annotation: /number=8 ignored annotation: intron 3729..3942 ignored annotation: /gene="PCK1" ignored annotation: /number=8 ignored annotation: exon 3943..>4892 ignored annotation: /gene="PCK1" ignored annotation: /citation=[1] ignored annotation: /number=9 ignored annotation: repeat_region 4742..4785 ignored annotation: /gene="PCK1" ignored annotation: /citation=[2] ignored annotation: /rpt_type=tandem ignored annotation: /label=polymorphism ignored annotation: BASE COUNT 1257 a 1145 c 1257 g 1233 t // ** orig/raws/HUMPHOSA:201: missing "mRNA" entry === HUMPIM1A === locus = HUMPIM1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="6p21" ignored annotation: prim_transcript 780..6018 ignored annotation: /note="pim-1 mRNA and introns" ignored annotation: exon <1170..1251 ignored annotation: /gene="PIM1" ignored annotation: /note="pim-1 protein; G00-119-495" ignored annotation: /number=1 ignored annotation: gene 1170..1251 ignored annotation: /gene="PIM1" CDS = 1170..1251,1365..1471,1573..1623,1717..2083,3588..3764,4526..4683 ignored annotation: /partial ignored annotation: /note="pim-1 protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g387022" translation = MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK ignored annotation: intron 1252..1364 ignored annotation: /note="pim-1 intron A" ignored annotation: exon 1365..1471 ignored annotation: /number=2 ignored annotation: intron 1472..1572 ignored annotation: /note="pim-1 intron B" ignored annotation: exon 1573..1623 ignored annotation: /number=3 ignored annotation: intron 1624..1716 ignored annotation: /note="pim-1 intron C" ignored annotation: exon 1717..2083 ignored annotation: /number=4 ignored annotation: intron 2084..3587 ignored annotation: /note="pim-1 intron D" ignored annotation: exon 3588..3764 ignored annotation: /number=5 ignored annotation: intron 3765..4525 ignored annotation: /note="pim-1 intron E" ignored annotation: exon 4526..>4683 ignored annotation: /note="pim-1 protein" ignored annotation: /number=6 ignored annotation: BASE COUNT 1198 a 1696 c 1716 g 1503 t // ** orig/raws/HUMPIM1A:168: missing "mRNA" entry === HUMPP14B === locus = HUMPP14B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="9q34" ignored annotation: CAAT_signal 2891..2899 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: TATA_signal 2942..2948 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: prim_transcript 2971..8010 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 mRNA and introns; G00-127-516" ignored annotation: sig_peptide 3019..3072 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14 signal peptide; G00-127-516" ignored annotation: gene join(3019..3114,3510..3649,4036..4109,5482..5592, ignored annotation: 6644..6748,7019..7035) ignored annotation: /gene="PAEP" CDS = 3019..3114,3510..3649,4036..4109,5482..5592,6644..6748,7019..7035 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14 precursor (PP14)" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-127-516" ignored annotation: /db_xref="PID:g190217" translation = MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF ignored annotation: exon <3019..3114 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14 precursor (PP14); G00-127-516" ignored annotation: /number=1 ignored annotation: mat_peptide 3073..3114 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14; G00-127-516" ignored annotation: intron 3115..3509 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 intron A; G00-127-516" ignored annotation: mat_peptide 3510..3649 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14; G00-127-516" ignored annotation: exon 3510..3649 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: /number=2 ignored annotation: intron 3650..4035 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 intron B; G00-127-516" ignored annotation: mat_peptide 4036..4109 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14; G00-127-516" ignored annotation: exon 4036..4109 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: /number=3 ignored annotation: intron 4110..5481 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 intron C; G00-127-516" ignored annotation: exon 5482..5592 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: /number=4 ignored annotation: mat_peptide 5482..5592 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14; G00-127-516" ignored annotation: intron 5593..6643 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 intron D; G00-127-516" ignored annotation: mat_peptide 6644..6748 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14; G00-127-516" ignored annotation: exon 6644..6748 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: intron 6749..7018 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 intron E; G00-127-516" ignored annotation: exon 7019..>7035 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14 precursor (PP14); G00-127-516" ignored annotation: mat_peptide 7019..7032 ignored annotation: /gene="PAEP" ignored annotation: /note="placental protein 14; G00-127-516" ignored annotation: intron 7036..7786 ignored annotation: /gene="PAEP" ignored annotation: /note="PP14 intron F; G00-127-516" ignored annotation: polyA_signal 7992..7997 ignored annotation: /gene="PAEP" ignored annotation: /note="G00-127-516" ignored annotation: BASE COUNT 1636 a 2226 c 2203 g 2011 t // ** orig/raws/HUMPP14B:247: missing "mRNA" entry === HUMPPPA === locus = HUMPPPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="17p11.1-qter" ignored annotation: prim_transcript 937..2601 ignored annotation: /note="mRNA and introns" ignored annotation: intron 995..1750 ignored annotation: /note="intron A" ignored annotation: gene 1751..1941 ignored annotation: /gene="PPY" CDS = 1751..1941,2192..2263,2455..2479 ignored annotation: /note="pancreatic polypeptide precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g190270" translation = MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL ignored annotation: exon <1751..1941 ignored annotation: /gene="PPY" ignored annotation: /note="pancreatic polypeptide precursor, (first ignored annotation: translated exon); G00-120-311" ignored annotation: /number=2 ignored annotation: intron 1942..2191 ignored annotation: /note="intron B" ignored annotation: exon 2192..2263 ignored annotation: intron 2264..2454 ignored annotation: /note="intron C" ignored annotation: exon 2455..>2479 ignored annotation: /note="pancreatic polypeptide precursor" ignored annotation: /number=4 ignored annotation: BASE COUNT 532 a 794 c 826 g 623 t // ** orig/raws/HUMPPPA:95: missing "mRNA" entry === HUMPRCA === locus = HUMPRCA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="2q13-q21" ignored annotation: gene 2131..2200 ignored annotation: /gene="PROC" ignored annotation: exon <2131..2200 ignored annotation: /gene="PROC" ignored annotation: /note="Protein C; G00-120-317" ignored annotation: /number=1 ignored annotation: sig_peptide join(2131..2200,3464..3519) ignored annotation: /note="Protein C signal peptide" CDS = 2131..2200,3464..3630,5093..5117,5210..5347,5450..5584,8253..8395,9269..9386,10516..11105 ignored annotation: /note="Protein C" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g190334" translation = MWQLTSLLLFVATWGISGTPAPLDSVFSSSERAHQVLRIRKRANSFLEELRHSSLERECIEEICDFEEAKEIFQNVDDTLAFWSKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHLKRDTEDQEDQVDPRLIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP ignored annotation: intron 2201..3463 ignored annotation: /note="ProC cds intron A" ignored annotation: exon 3464..3630 ignored annotation: /number=2 ignored annotation: mat_peptide join(3520..3630,5093..5117,5210..5347,5450..5584, ignored annotation: 8253..8395,9269..9386,10516..11102) ignored annotation: intron 3631..5092 ignored annotation: /note="ProC cds intron B" ignored annotation: exon 5093..5117 ignored annotation: /number=3 ignored annotation: intron 5118..5209 ignored annotation: /note="ProC cds intron C" ignored annotation: exon 5210..5347 ignored annotation: /number=4 ignored annotation: intron 5348..5449 ignored annotation: /note="ProC cds intron D" ignored annotation: exon 5450..5584 ignored annotation: /number=5 ignored annotation: intron 5585..8252 ignored annotation: /note="ProC cds intron E" ignored annotation: exon 8253..8395 ignored annotation: /number=6 ignored annotation: intron 8396..9268 ignored annotation: /note="ProC cds intron F" ignored annotation: exon 9269..9386 ignored annotation: /number=7 ignored annotation: intron 9387..10515 ignored annotation: /note="ProC cds intron G" ignored annotation: exon 10516..>11105 ignored annotation: /note="Protein C" ignored annotation: /number=8 ignored annotation: BASE COUNT 2444 a 3298 c 3375 g 2608 t // ** orig/raws/HUMPRCA:271: missing "mRNA" entry === HUMPREELAS === locus = HUMPREELAS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /tissue_lib="EMBL-3 (from Clontech)" ignored annotation: exon 1..595 ignored annotation: /number=1 ignored annotation: CAAT_signal 398..401 CDS = 517..595,1453..1727 ignored annotation: /note="elafin has been sequenced at the protein level; ignored annotation: pre-elafin has not; its existence is assumed from its ignored annotation: molecular weight (PAGE analysis); precursor; putative; ignored annotation: precursor" ignored annotation: /codon_start=1 ignored annotation: /function="elastase-specific proteinase inhibitor" ignored annotation: /product="elafin" ignored annotation: /db_xref="PID:g190338" translation = MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ ignored annotation: intron 596..1452 ignored annotation: /number=1 ignored annotation: exon 1453..1728 ignored annotation: /number=2 ignored annotation: mat_peptide 1554..1724 ignored annotation: /product="elafin" ignored annotation: intron 1729..1961 ignored annotation: /number=2 ignored annotation: exon 1962..2119 ignored annotation: /number=3 ignored annotation: polyA_signal 2114..2119 ignored annotation: BASE COUNT 595 a 537 c 603 g 572 t 2 others 2221 gaggggaaac ggtcccatgg tgaaagagag caggnnggag gaaacaagga ggcacatgct ** orig/raws/HUMPREELAS:86: invalid base letter "n" === HUMPRF1A === locus = HUMPRF1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="17q11.2-q21.3" ignored annotation: prim_transcript 1410..>6123 ignored annotation: /note="perforin mRNA and introns" ignored annotation: intron 1507..3269 ignored annotation: /note="perforin intron A" ignored annotation: exon <3274..3812 ignored annotation: /gene="PRF1" ignored annotation: /note="perforin; G00-118-853" ignored annotation: /number=1 ignored annotation: gene 3274..3812 ignored annotation: /gene="PRF1" CDS = 3274..3812,4995..6123 ignored annotation: /note="perforin" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g190340" translation = MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFPVDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARDAARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYSFHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREALRRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQMLLGEPPGNRSGAVW ignored annotation: intron 3813..4994 ignored annotation: /note="perforin intron B" ignored annotation: exon 4995..>6123 ignored annotation: /note="perforin" ignored annotation: /number=2 ignored annotation: BASE COUNT 1385 a 1781 c 1769 g 1283 t // ** orig/raws/HUMPRF1A:156: missing "mRNA" entry === HUMPROT1B === locus = HUMPROT1B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="PRM-1" ignored annotation: /tissue_lib="of A.M.Frischauf" ignored annotation: /map="16p13.13" ignored annotation: CAAT_signal 519..522 ignored annotation: /gene="PRM1" ignored annotation: /note="G00-120-316" ignored annotation: TATA_signal 544..548 ignored annotation: /gene="PRM1" ignored annotation: /note="G00-120-316" ignored annotation: exon 575..777 ignored annotation: /gene="PRM1" ignored annotation: /note="G00-120-316" ignored annotation: /number=1 ignored annotation: gene join(666..777,869..912) ignored annotation: /gene="PRM1" CDS = 666..777,869..912 ignored annotation: /gene="PRM1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-316" ignored annotation: /product="protamine 1" ignored annotation: /db_xref="PID:g190454" translation = MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH ignored annotation: intron 778..868 ignored annotation: /gene="PRM1" ignored annotation: /note="G00-120-316" ignored annotation: polyA_signal 1045..1050 ignored annotation: /gene="PRM1" ignored annotation: /note="G00-120-316" ignored annotation: BASE COUNT 347 a 337 c 342 g 280 t // ** orig/raws/HUMPROT1B:73: missing "mRNA" entry === HUMPROT2 === locus = HUMPROT2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="PRM-2" ignored annotation: /tissue_lib="of Frischauf" ignored annotation: /map="16p13.13" ignored annotation: CAAT_signal 553..556 ignored annotation: /gene="PRM2" ignored annotation: /note="G00-125-271" ignored annotation: TATA_signal 767..772 ignored annotation: /gene="PRM2" ignored annotation: /note="G00-125-271" ignored annotation: exon 804..1174 ignored annotation: /gene="PRM2" ignored annotation: /note="G00-125-271" ignored annotation: /number=1 ignored annotation: gene join(904..1174,1338..1375) ignored annotation: /gene="PRM2" CDS = 904..1174,1338..1375 ignored annotation: /gene="PRM2" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-125-271" ignored annotation: /product="proatamine 2" ignored annotation: /db_xref="PID:g190456" translation = MVRYRVRSLSERSHEVYRQQLHGQEQGHHGQEEQGLSPEHVEVYERTHGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRRSCRHRRRHRRGCRTRKRTCRRH ignored annotation: intron 1175..1337 ignored annotation: /gene="PRM2" ignored annotation: /note="G00-125-271" ignored annotation: polyA_signal 1618..1623 ignored annotation: /gene="PRM2" ignored annotation: /note="G00-125-271" ignored annotation: BASE COUNT 479 a 537 c 527 g 318 t // ** orig/raws/HUMPROT2:84: missing "mRNA" entry === HUMPRPH1 === locus = HUMPRPH1 ignored annotation: /organism="Homo sapiens" ignored annotation: /isolate="R.D." ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="1-4" ignored annotation: /cell_type="white blood cell" ignored annotation: /map="12p13.2" ignored annotation: /chromosome="12" ignored annotation: repeat_region 224..295 ignored annotation: /note="72 bp repeat" ignored annotation: /rpt_type=tandem ignored annotation: repeat_region 296..367 ignored annotation: /note="72 bp repeat" ignored annotation: /rpt_type=tandem ignored annotation: exon 1561..1716 ignored annotation: /gene="PRH1" ignored annotation: /number=1 ignored annotation: gene 1561..4833 ignored annotation: /gene="PRH1" ignored annotation: sig_peptide 1653..1700 ignored annotation: /gene="PRH1" CDS = 1653..1716,2768..2803,3166..3566 ignored annotation: /gene="PRH1" ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="proline-rich protein 1" ignored annotation: /db_xref="PID:g190512" translation = MLLILLSVALLAFSSAQDLNEDVSQEDVPLVISDGGDSEQFIDEERQGPPLGGQQSQPSAGDGNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ ignored annotation: mat_peptide join(1701..1716,2768..2803,3166..3563) ignored annotation: /gene="PRH1" ignored annotation: /product="proline-rich protein 1" ignored annotation: intron 1717..2767 ignored annotation: /gene="PRH1" ignored annotation: /number=1 ignored annotation: repeat_region 1752..1883 ignored annotation: /rpt_type=direct ignored annotation: repeat_region 2381..2528 ignored annotation: /rpt_type=direct ignored annotation: exon 2768..2803 ignored annotation: /gene="PRH1" ignored annotation: /number=2 ignored annotation: intron 2804..3165 ignored annotation: /gene="PRH1" ignored annotation: /number=2 ignored annotation: exon 3166..3584 ignored annotation: /gene="PRH1" ignored annotation: /number=3 ignored annotation: repeat_region 3273..3320 ignored annotation: /rpt_type=tandem ignored annotation: repeat_region 3321..3371 ignored annotation: /rpt_type=tandem ignored annotation: repeat_region 3372..3421 ignored annotation: /rpt_type=tandem ignored annotation: repeat_region 3422..3485 ignored annotation: /rpt_type=tandem ignored annotation: repeat_region 3486..3536 ignored annotation: /rpt_type=tandem ignored annotation: intron 3585..4743 ignored annotation: /gene="PRH1" ignored annotation: /number=3 ignored annotation: exon 4744..4833 ignored annotation: /gene="PRH1" ignored annotation: /number=4 ignored annotation: BASE COUNT 1516 a 1030 c 1067 g 1333 t // ** orig/raws/HUMPRPH1:176: missing "mRNA" entry === HUMPSAP === locus = HUMPSAP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 128..133 ignored annotation: prim_transcript 171..4637 ignored annotation: /note="PSAP mRNA and introns" ignored annotation: intron 200..1022 ignored annotation: /note="PSAP intron A" ignored annotation: sig_peptide 1046..1105 ignored annotation: /note="pulmonary surfactant apoprotein signal peptide" CDS = 1046..1217,1531..1650,2404..2481,2957..3333 ignored annotation: /note="pulmonary surfactant apoprotein precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g190565" translation = MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRHGRDGLKGDLGPPGPMGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLRAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLYSRLTICEF ignored annotation: exon <1046..1217 ignored annotation: /note="pulmonary surfactant apoprotein precursor, (first ignored annotation: expressed exon)" ignored annotation: /number=2 ignored annotation: mat_peptide 1106..1217 ignored annotation: /note="pulmonary surfactant apoprotein" ignored annotation: intron 1218..1530 ignored annotation: /note="PSAP intron B" ignored annotation: mat_peptide 1531..1650 ignored annotation: /note="pulmonary surfactant apoprotein" ignored annotation: exon 1531..1650 ignored annotation: /number=3 ignored annotation: intron 1651..2403 ignored annotation: /note="PSAP intron C" ignored annotation: mat_peptide 2404..2481 ignored annotation: /note="pulmonary surfactant apoprotein" ignored annotation: exon 2404..2481 ignored annotation: /number=4 ignored annotation: intron 2482..2956 ignored annotation: /note="PSAP intron D" ignored annotation: exon 2957..>3333 ignored annotation: /note="pulmonary surfactant apoprotein precursor" ignored annotation: /number=5 ignored annotation: mat_peptide 2957..3330 ignored annotation: /note="pulmonary surfactant apoprotein" ignored annotation: polyA_signal 4619..4624 ignored annotation: polyA_signal 4639..4644 ignored annotation: BASE COUNT 1152 a 1223 c 1350 g 1053 t // ** orig/raws/HUMPSAP:147: missing "mRNA" entry === HUMPTH2 === locus = HUMPTH2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="11p15.2-p15.1" ignored annotation: gene join(J00300:282..526,1..563) ignored annotation: /gene="PTH" ignored annotation: intron <1..107 ignored annotation: /gene="PTH" ignored annotation: /note="pth intron 1" ignored annotation: prim_transcript <1..913 ignored annotation: /note="pth mRNA" ignored annotation: exon <113..198 ignored annotation: /gene="PTH" ignored annotation: /note="preproparathyroid hormone; G00-119-522" CDS = 113..198,302..563 ignored annotation: /gene="PTH" ignored annotation: /note="preproparathyroid hormone" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-522" ignored annotation: /db_xref="PID:g190704" translation = MIPAKDMAKVMIVMLAICFLTKSDGKSVKKRSVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFVALGAPLAPRDAGSQRPRKKEDNVLVESHEKSLGEADKADVNVLTKAKSQ ignored annotation: sig_peptide 116..187 ignored annotation: /gene="PTH" ignored annotation: /note="prepeptide" ignored annotation: intron 199..301 ignored annotation: /gene="PTH" ignored annotation: /note="pth intron 2" ignored annotation: exon 302..>563 ignored annotation: /gene="PTH" ignored annotation: /note="preproparathyroid hormone" ignored annotation: mat_peptide 309..560 ignored annotation: /gene="PTH" ignored annotation: /note="parathyroid hormone" ignored annotation: BASE COUNT 371 a 188 c 210 g 387 t // ** orig/raws/HUMPTH2:84: missing "mRNA" entry === HUMRBPA === locus = HUMRBPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: repeat_region 1688..1972 ignored annotation: /rpt_family="Alu" ignored annotation: exon 3953..4064 ignored annotation: /number=1 ignored annotation: gene join(4053..4064,4335..4463,5702..5906,7788..7966, ignored annotation: 11118..11276,12210..12320,12576..12734) ignored annotation: /gene="CRALBP" CDS = 4053..4064,4335..4463,5702..5906,7788..7966,11118..11276,12210..12320,12576..12734 ignored annotation: /gene="CRALBP" ignored annotation: /codon_start=1 ignored annotation: /product="retinaldehyde-binding protein" ignored annotation: /db_xref="PID:g598229" translation = MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAENTAF ignored annotation: intron 4065..4334 ignored annotation: /number=2 ignored annotation: exon 4335..4463 ignored annotation: /gene="CRALBP" ignored annotation: /number=3 ignored annotation: intron 4464..5701 ignored annotation: /number=3 ignored annotation: exon 5702..5906 ignored annotation: /gene="CRALBP" ignored annotation: /number=4 ignored annotation: intron 5907..7787 ignored annotation: /number=4 ignored annotation: exon 7788..7966 ignored annotation: /gene="CRALBP" ignored annotation: /number=5 ignored annotation: intron 7967..11117 ignored annotation: /number=5 ignored annotation: repeat_region 8534..8875 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 9991..10277 ignored annotation: /rpt_family="Alu" ignored annotation: exon 11118..11276 ignored annotation: /gene="CRALBP" ignored annotation: /number=6 ignored annotation: intron 11277..12209 ignored annotation: /number=6 ignored annotation: exon 12210..12320 ignored annotation: /gene="CRALBP" ignored annotation: /number=7 ignored annotation: intron 12321..12575 ignored annotation: /number=7 ignored annotation: exon 12576..13130 ignored annotation: /number=8 ignored annotation: repeat_region 13611..>13646 ignored annotation: /rpt_family="Alu" ignored annotation: BASE COUNT 3374 a 3260 c 3479 g 3533 t // ** orig/raws/HUMRBPA:305: missing "mRNA" entry === HUMRCP === locus = HUMRCP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /chromosome="20" ignored annotation: /clone_lib="lambda DASHII" ignored annotation: /map="20q12" ignored annotation: /tissue_type="placenta" ignored annotation: protein_bind 5..9 ignored annotation: /bound_moiety="LBP-1" ignored annotation: misc_feature 10..15 ignored annotation: /note="E-alpha H box" ignored annotation: protein_bind 68..72 ignored annotation: /bound_moiety="LBP-1" ignored annotation: protein_bind 103..108 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 108..113 ignored annotation: /bound_moiety="H4TF-2" ignored annotation: protein_bind 116..124 ignored annotation: /bound_moiety="NF-kB" ignored annotation: protein_bind 129..136 ignored annotation: /bound_moiety="AP-2" ignored annotation: protein_bind 133..138 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 148..155 ignored annotation: /bound_moiety="AP-2" ignored annotation: protein_bind 165..169 ignored annotation: /bound_moiety="LBP-1" ignored annotation: protein_bind 169..177 ignored annotation: /bound_moiety="NF-kB" ignored annotation: protein_bind 178..183 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 189..194 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 197..202 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 203..208 ignored annotation: /bound_moiety="SP1" ignored annotation: protein_bind 212..221 ignored annotation: /note="GC-BOX" ignored annotation: /bound_moiety="SP1" ignored annotation: TATA_signal 234..240 ignored annotation: /note="TATA box like (TATAGAA)" ignored annotation: protein_bind 253..262 ignored annotation: /bound_moiety="AP-2" ignored annotation: misc_feature 261 ignored annotation: /note="Cap site" ignored annotation: exon 261..363 ignored annotation: /number=1 CDS = 304..363,12753..12891,15607..15653,18112..18310,21260..21411 ignored annotation: /codon_start=1 ignored annotation: /product="ryudocan core protein" ignored annotation: /db_xref="PID:d1020390" ignored annotation: /db_xref="PID:g1944492" translation = MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPDDEDVVGPGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIYKKAPTNEFYA ignored annotation: exon 12753..12891 ignored annotation: /number=2 ignored annotation: exon 15607..15653 ignored annotation: /number=3 ignored annotation: exon 18112..18310 ignored annotation: /number=4 ignored annotation: exon 21260..23384 ignored annotation: /number=5 ignored annotation: polyA_signal 22555..22560 ignored annotation: polyA_signal 22563..22568 ignored annotation: polyA_signal 23365..23370 ignored annotation: BASE COUNT 5548 a 5624 c 6307 g 6343 t // ** orig/raws/HUMRCP:498: missing "mRNA" entry === HUMREGB === locus = HUMREGB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 1169..1174 ignored annotation: prim_transcript 1196..4116 ignored annotation: /note="reg mRNA and introns" ignored annotation: intron 1224..1524 ignored annotation: /note="reg intron A" CDS = 1571..1634,2270..2388,2696..2833,3549..3660,3856..3923 ignored annotation: /note="regenerating protein (reg)" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g190981" translation = MAQTSSYFMLISCLMFLSQSQGQEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIALHDPKKNRRWHWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN ignored annotation: exon <1571..1634 ignored annotation: /note="regenerating protein (reg), (first expressed ignored annotation: exon)" ignored annotation: /number=2 ignored annotation: intron 1635..2269 ignored annotation: /note="reg intron B" ignored annotation: exon 2270..2388 ignored annotation: /note="regenerating protein" ignored annotation: /number=3 ignored annotation: intron 2389..2695 ignored annotation: /note="reg intron C" ignored annotation: exon 2696..2833 ignored annotation: /note="regenerating protein" ignored annotation: /number=4 ignored annotation: intron 2834..3548 ignored annotation: /note="reg intron D" ignored annotation: exon 3549..3660 ignored annotation: /note="regenerating protein" ignored annotation: /number=5 ignored annotation: intron 3661..3855 ignored annotation: /note="reg intron E" ignored annotation: exon 3856..>3923 ignored annotation: /note="regenerating protein" ignored annotation: BASE COUNT 1161 a 927 c 869 g 1294 t // ** orig/raws/HUMREGB:135: missing "mRNA" entry === HUMRETBLAS === locus = HUMRETBLAS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: protein_bind 1858..1863 ignored annotation: /bound_moiety="SP1" ignored annotation: /evidence=experimental ignored annotation: protein_bind 1866..1872 ignored annotation: /bound_moiety="ATF" ignored annotation: /evidence=experimental ignored annotation: exon <2060..2196 ignored annotation: /number=1 CDS = 2060..2196,5424..5550,39446..39561,41926..42045,44668..44706,45799..45866,56853..56963,59651..59793,61730..61807,64330..64439,65364..65441,70242..70329,73753..73869,76430..76486,76889..76920,77001..77077,78083..78279,149998..150116,153208..153353,156693..156838,160730..160834,161997..162110,162204..162367,170372..170402,173707..173849,174361..174410,177005..177078 ignored annotation: /codon_start=1 ignored annotation: /product="retinoblastoma susceptibility protein" ignored annotation: /db_xref="PID:g292421" translation = MPPKTPRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNLLKEIDTSTKVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSSISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFMNSLGLVTSNGLPEVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDSIDSFETQRTPRKSNLDEEVNVIPPHTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLSPIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFGTSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQKLAEMTSTRTRMQKQKMNDSMDTSNKEEK ignored annotation: intron 2197..5423 ignored annotation: /number=1 ignored annotation: variation 2302 ignored annotation: /standard_name="Restriction Fragment Length Polymorphism" ignored annotation: /note="BamHI RFLP" ignored annotation: exon 5424..5550 ignored annotation: /number=2 ignored annotation: intron 5551..39445 ignored annotation: /number=2 ignored annotation: satellite 14868..14914 ignored annotation: /standard_name="microsatellite RBi2 (AFM058xd6)" ignored annotation: exon 39446..39561 ignored annotation: /number=3 ignored annotation: intron 39562..41925 ignored annotation: /number=3 ignored annotation: exon 41926..42045 ignored annotation: /number=4 ignored annotation: intron 42046..44667 ignored annotation: /number=4 ignored annotation: satellite 43218..43257 ignored annotation: /standard_name="microsatellite RBi4" ignored annotation: exon 44668..44706 ignored annotation: /number=5 ignored annotation: intron 44707..45798 ignored annotation: /number=5 ignored annotation: exon 45799..45866 ignored annotation: /number=6 ignored annotation: intron 45867..56852 ignored annotation: /number=6 ignored annotation: exon 56853..56963 ignored annotation: /number=7 ignored annotation: intron 56964..59650 ignored annotation: /number=7 ignored annotation: exon 59651..59793 ignored annotation: /number=8 ignored annotation: intron 59794..61729 ignored annotation: /number=8 ignored annotation: exon 61730..61807 ignored annotation: /number=9 ignored annotation: intron 61808..64329 ignored annotation: /number=9 ignored annotation: exon 64330..64439 ignored annotation: /number=10 ignored annotation: intron 64440..65363 ignored annotation: /number=10 ignored annotation: exon 65364..65441 ignored annotation: /number=11 ignored annotation: intron 65442..70241 ignored annotation: /number=11 ignored annotation: exon 70242..70329 ignored annotation: /number=12 ignored annotation: intron 70330..73752 ignored annotation: /number=12 ignored annotation: exon 73753..73869 ignored annotation: /number=13 ignored annotation: intron 73870..76429 ignored annotation: /number=13 ignored annotation: exon 76430..76486 ignored annotation: /number=14 ignored annotation: intron 76487..76888 ignored annotation: /number=14 ignored annotation: exon 76889..76920 ignored annotation: /number=15 ignored annotation: intron 76921..77000 ignored annotation: /number=15 ignored annotation: exon 77001..77077 ignored annotation: /number=16 ignored annotation: intron 77078..78082 ignored annotation: /number=16 ignored annotation: exon 78083..78279 ignored annotation: /number=17 ignored annotation: intron 78280..149997 ignored annotation: /number=17 ignored annotation: variation 99426 ignored annotation: /standard_name="Restriction Fragment Length Polymorphism" ignored annotation: /note="XbaI RFLP" ignored annotation: satellite 102921..102959 ignored annotation: /standard_name="microsatellite RBi17" ignored annotation: repeat_region 123912..125501 ignored annotation: /standard_name="Variable Number Tandem Repeats (VNTR)" ignored annotation: /rpt_type=tandem ignored annotation: exon 149998..150116 ignored annotation: /number=18 ignored annotation: intron 150117..153207 ignored annotation: /number=18 ignored annotation: exon 153208..153353 ignored annotation: /number=19 ignored annotation: intron 153354..156692 ignored annotation: /number=19 ignored annotation: exon 156693..156838 ignored annotation: /number=20 ignored annotation: intron 156839..160729 ignored annotation: /number=20 ignored annotation: satellite 156895..156976 ignored annotation: /standard_name="microsatellite RB1.20" ignored annotation: exon 160730..160834 ignored annotation: /number=21 ignored annotation: intron 160835..161996 ignored annotation: /number=21 ignored annotation: exon 161997..162110 ignored annotation: /number=22 ignored annotation: intron 162111..162203 ignored annotation: /number=22 ignored annotation: exon 162204..162367 ignored annotation: /number=23 ignored annotation: intron 162368..170371 ignored annotation: /number=23 ignored annotation: exon 170372..170402 ignored annotation: /number=24 ignored annotation: intron 170403..173706 ignored annotation: /number=24 ignored annotation: variation 171935 ignored annotation: /standard_name="Restriction Fragment Length Polymorphism" ignored annotation: /note="Tth111I RFLP" ignored annotation: exon 173707..173849 ignored annotation: /number=25 ignored annotation: intron 173850..174360 ignored annotation: /number=25 ignored annotation: exon 174361..174410 ignored annotation: /number=26 ignored annotation: intron 174411..177004 ignored annotation: /number=26 ignored annotation: exon 177005..>177078 ignored annotation: /number=27 ignored annotation: polyA_signal 178872..178877 ignored annotation: polyA_site 178993 ignored annotation: BASE COUNT 55354 a 32559 c 34187 g 58288 t // ** orig/raws/HUMRETBLAS:3228: missing "mRNA" entry === HUMRIGBCHA === locus = HUMRIGBCHA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" mRNA = 354..511,1381..1510,2026..2160,4475..4531,5079..5237,5640..5738,7224..10214 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /product="high affinity IgE receptor beta chain" ignored annotation: exon 354..511 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=1 ignored annotation: gene 354..10214 ignored annotation: /gene="high affinity IgE receptor beta chain" CDS = 456..511,1381..1510,2026..2160,4475..4531,5079..5237,5640..5738,7224..7322 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /codon_start=1 ignored annotation: /product="high affinity IgE receptor beta chain" ignored annotation: /db_xref="PID:g337418" translation = MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEFLGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTEIVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSPPIDL ignored annotation: intron 512..1380 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=1 ignored annotation: exon 1381..1510 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=2 ignored annotation: intron 1511..2025 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=2 ignored annotation: exon 2026..2160 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=3 ignored annotation: intron 2161..4474 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=3 ignored annotation: exon 4475..4531 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=4 ignored annotation: intron 4532..5078 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=4 ignored annotation: exon 5079..5237 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=5 ignored annotation: intron 5238..5639 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=5 ignored annotation: exon 5640..5738 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=6 ignored annotation: intron 5739..7223 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=6 ignored annotation: exon 7224..10214 ignored annotation: /gene="high affinity IgE receptor beta chain" ignored annotation: /number=7 ignored annotation: BASE COUNT 3470 a 2113 c 2283 g 3415 t 17 others 2941 cttctatgcc ctagaaactc ttttanggta ttttctcctg gtatctcttt tacncatcgt ** orig/raws/HUMRIGBCHA:128: invalid base letter "n" === HUMROD1X === locus = HUMROD1X ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="adult" ignored annotation: /tissue_lib="lambda DASH" ignored annotation: /map="Unassigned" mRNA = 637..1241,1629..1875,1992..2487 ignored annotation: /gene="ROM1" ignored annotation: /note="G00-120-350" ignored annotation: exon 637..1241 ignored annotation: /gene="ROM1" ignored annotation: /note="G00-120-350" ignored annotation: /number=1 ignored annotation: gene join(637..1241,1629..1875,1992..2487) ignored annotation: /gene="ROM1" CDS = 652..1241,1629..1875,1992..2210 ignored annotation: /gene="ROM1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-350" ignored annotation: /product="rod outer segment membrane protein 1" ignored annotation: /db_xref="PID:g292431" translation = MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVIDAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA ignored annotation: intron 1242..1628 ignored annotation: /gene="ROM1" ignored annotation: /note="G00-120-350" ignored annotation: /number=1 ignored annotation: exon 1629..1875 ignored annotation: /gene="ROM1" ignored annotation: /note="G00-120-350" ignored annotation: /number=2 ignored annotation: intron 1876..1991 ignored annotation: /gene="ROM1" ignored annotation: /note="G00-120-350" ignored annotation: /number=2 ignored annotation: exon 1992..2487 ignored annotation: /gene="ROM1" ignored annotation: /note="G00-120-350" ignored annotation: /number=3 ignored annotation: BASE COUNT 538 a 871 c 867 g 565 t mRNA range 637..1241 mRNA range 1629..1875 mRNA range 1992..2487 CDS range 652..1241 CDS range 1629..1875 CDS range 1992..2210 seq_ini = 1 seq_fin = 2841 i = 2210 last codon bas = cc[tag]agg last codon lab = EF[DEF]YYY === HUMRPS17A === locus = HUMRPS17A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="Unassigned" ignored annotation: prim_transcript 173..3844 ignored annotation: /note="S17 mRNA and introns" ignored annotation: exon <198..200 ignored annotation: /gene="RPS17" ignored annotation: /note="S17 ribosomal protein" ignored annotation: /number=1 ignored annotation: gene join(198..200,493..644,1641..1746,2255..2320,3718..3798) ignored annotation: /gene="RPS17" CDS = 198..200,493..644,1641..1746,2255..2320,3718..3798 ignored annotation: /gene="RPS17" ignored annotation: /note="S17 ribosomal protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-128-851" ignored annotation: /db_xref="PID:g337503" translation = MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGPV ignored annotation: intron 201..492 ignored annotation: /note="intron A" ignored annotation: exon 493..644 ignored annotation: /gene="RPS17" ignored annotation: /number=2 ignored annotation: intron 645..1640 ignored annotation: /note="intron B" ignored annotation: repeat_region 929..1197 ignored annotation: /note="Alu repetitive sequence element" ignored annotation: exon 1641..1746 ignored annotation: /gene="RPS17" ignored annotation: /number=3 ignored annotation: intron 1747..2254 ignored annotation: /note="intron C" ignored annotation: exon 2255..2320 ignored annotation: /gene="RPS17" ignored annotation: /number=4 ignored annotation: intron 2321..3717 ignored annotation: /note="intron D" ignored annotation: exon 3718..>3798 ignored annotation: /gene="RPS17" ignored annotation: /note="S17 ribosomal protein" ignored annotation: /number=5 ignored annotation: BASE COUNT 885 a 960 c 1079 g 1105 t // ** orig/raws/HUMRPS17A:132: missing "mRNA" entry === HUMRPS6B === locus = HUMRPS6B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /tissue_lib="Stratagene cat.# 943202; Lambda DASH" ignored annotation: /map="9p21" mRNA = 312..358,927..1058,1627..1837,2031..2177,3893..4050,4156..4288 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: gene join(312..358,927..1058,1627..1837,2031..2177,3893..4050, ignored annotation: 4156..4288) ignored annotation: /gene="RPS6" ignored annotation: exon 312..358 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=1 ignored annotation: 5'UTR 312..352 ignored annotation: /gene="RPS6" CDS = 353..358,927..1058,1627..1837,2031..2177,3893..4050,4156..4251 ignored annotation: /gene="RPS6" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-118-869" ignored annotation: /product="ribosomal protein S6" ignored annotation: /db_xref="PID:g307393" translation = MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK ignored annotation: intron 359..926 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=1 ignored annotation: exon 927..1058 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=2 ignored annotation: intron 1059..1626 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=2 ignored annotation: exon 1627..1837 ignored annotation: /gene="RPS6" ignored annotation: /number=3 ignored annotation: intron 1838..2030 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=3 ignored annotation: exon 2031..2177 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=4 ignored annotation: intron 2178..3892 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=4 ignored annotation: exon 3893..4050 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=5 ignored annotation: intron 4051..4155 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=5 ignored annotation: exon 4156..4288 ignored annotation: /gene="RPS6" ignored annotation: /note="G00-118-869" ignored annotation: /number=6 ignored annotation: 3'UTR 4252..4288 ignored annotation: /gene="RPS6" ignored annotation: BASE COUNT 1423 a 919 c 1154 g 1492 t 2 others 3361 ggcctatnct ccaatgcaga tctgtaatcc atgagcagtt ttggagtaca gatcagatta ** orig/raws/HUMRPS6B:167: invalid base letter "n" === HUMSAP01 === locus = HUMSAP01 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: TATA_signal 143..149 ignored annotation: exon 172..331 ignored annotation: /note="serum amyloid P component (SAP), exon 1" ignored annotation: prim_transcript 172..1210 CDS = 268..331,447..1054 ignored annotation: /partial ignored annotation: /note="serum amyloid P component" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:d1000504" ignored annotation: /db_xref="PID:g220068" translation = MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV ignored annotation: sig_peptide 271..324 ignored annotation: /partial ignored annotation: /note="SAP signal peptide" ignored annotation: mat_peptide join(325..331,447..1051) ignored annotation: /note="SAP mature peptide" ignored annotation: intron 332..446 ignored annotation: /note="SAP cds intron" ignored annotation: exon 447..1210 ignored annotation: /note="SAP, exon 2" ignored annotation: misc_feature 533..541 ignored annotation: /note="N-linked glycosylation site (putative)" ignored annotation: conflict 565 ignored annotation: /note="t in [J. Biochem. 100, 849-858 (1986)]; c in [1]" ignored annotation: /citation=[1] ignored annotation: conflict 682 ignored annotation: /note="a in [J. Biochem. 100, 849-858 (1986)]; t in [1]" ignored annotation: /citation=[1] ignored annotation: conflict 683 ignored annotation: /note="t in [J. Biochem. 100, 849-858 (1986)]; c in [1]" ignored annotation: /citation=[1] ignored annotation: conflict 685 ignored annotation: /note="c in [J. Biochem. 100, 849-858 (1986)]; a in [1]" ignored annotation: /citation=[1] ignored annotation: misc_feature 767..775 ignored annotation: /note="N-linked glycosylation site (putative)" ignored annotation: conflict 814 ignored annotation: /note="g in [J. Biochem. 100, 849-858 (1986)]; a in [1]" ignored annotation: /citation=[1] ignored annotation: conflict 943 ignored annotation: /note="t in [J. Biochem. 100, 849-858 (1986)]; c in [1]" ignored annotation: /citation=[2] ignored annotation: polyA_signal 1182..1187 ignored annotation: /note="polyadenylation signal of SAP gene (putative)" ignored annotation: polyA_site 1210 ignored annotation: BASE COUNT 375 a 312 c 302 g 405 t // ** orig/raws/HUMSAP01:111: missing "mRNA" entry === HUMSEMI === locus = HUMSEMI ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /tissue_type="blood" ignored annotation: /tissue_lib="lambda EMBL3" ignored annotation: TATA_signal 668..673 ignored annotation: /note="putative" ignored annotation: exon 696..792 ignored annotation: /gene="SEMGI" ignored annotation: /number=1 mRNA = 696..792,1037..2393,3264..3430 ignored annotation: /gene="SEMGI" ignored annotation: /note="mRNA start site experimentally determined" ignored annotation: gene 696..3430 ignored annotation: /gene="SEMGI" ignored annotation: sig_peptide 717..785 ignored annotation: /gene="SEMGI" ignored annotation: /note="putative" CDS = 717..792,1037..2349 ignored annotation: /gene="SEMGI" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g487420" translation = MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESKGSFSIQYTYHVDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSKGHFHRVVIHHKGGKAHRGTQNPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSGAQKGRKQGGSQSSYVLQTEELVANKQQRETKNSHQNKGHYQNVVEVREEHSSKVQTSLCPAHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHGRKANKISYQSSSTEERRLHYGENGVQKDVSQSSIYSQTEEKAQGKSQKQITIPSQEQEHSQKANKISYQSSSTEERRLHYGENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSHEQNGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT ignored annotation: intron 793..1036 ignored annotation: /gene="SEMGI" ignored annotation: /number=1 ignored annotation: exon 1037..2393 ignored annotation: /gene="SEMGI" ignored annotation: /number=2 ignored annotation: intron 2394..3263 ignored annotation: /gene="SEMGI" ignored annotation: /number=2 ignored annotation: exon 3264..3430 ignored annotation: /gene="SEMGI" ignored annotation: /number=3 ignored annotation: polyA_signal 3407..3412 ignored annotation: /gene="SEMGI" ignored annotation: polyA_site 3430 ignored annotation: /gene="SEMGI" ignored annotation: /note="putative" ignored annotation: BASE COUNT 1377 a 833 c 853 g 1101 t mRNA range 696..792 mRNA range 1037..2393 mRNA range 3264..3430 CDS range 717..792 CDS range 1037..2349 seq_ini = 1 seq_fin = 4164 i = 2349 last codon bas = ca[taa]acc last codon lab = EF[DEF]YYY === HUMSOMI === locus = HUMSOMI ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="3q28" ignored annotation: prim_transcript 1126..2605 ignored annotation: /note="som I mRNA" ignored annotation: gene 1231..1368 ignored annotation: /gene="SST" ignored annotation: sig_peptide 1231..1302 ignored annotation: /gene="SST" ignored annotation: /note="prosomatostatin I signal peptide" CDS = 1231..1368,2246..2458 ignored annotation: /note="preprosomatostatin I" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g338288" translation = MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAKYFLAELLSEPNQTENDALEPEDLSQAAEQDEMRLELQRSANSNPAMAPRERKAGCKNFFWKTFTSC ignored annotation: exon <1231..1368 ignored annotation: /gene="SST" ignored annotation: /note="preprosomatostatin I; G00-119-604" ignored annotation: /number=1 ignored annotation: intron 1369..2245 ignored annotation: /note="som I cds intron A" ignored annotation: exon 2246..>2458 ignored annotation: /note="preprosomatostatin I" ignored annotation: /number=2 ignored annotation: mat_peptide 2372..2455 ignored annotation: /note="somatostatin-28 peptide" ignored annotation: mat_peptide 2414..2455 ignored annotation: /note="somatostatin-14 peptide" ignored annotation: BASE COUNT 659 a 589 c 613 g 806 t // ** orig/raws/HUMSOMI:119: missing "mRNA" entry === HUMSPBAA === locus = HUMSPBAA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="lung" ignored annotation: /map="2" ignored annotation: gene 1040..10375 ignored annotation: /gene="SFTP3" ignored annotation: exon 1040..1120 ignored annotation: /gene="SFTP3" ignored annotation: /note="G00-120-374" ignored annotation: /number=1 CDS = 1054..1120,1431..1558,2060..2131,2495..2620,3447..3635,3863..3952,5386..5569,5742..5887,7122..7202,7697..7759 ignored annotation: /gene="SFTP3" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-120-374" ignored annotation: /product="pulmonary surfactant-associated protein SP-B" ignored annotation: /db_xref="PID:g338327" translation = MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVWGHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYFPLVIDYFQNQIDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPVLPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALRVAVAQVCRVVPLVAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSPTGEWLPRDSECHLCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTCQALGVCGTMSSPLQCIHSPDL ignored annotation: intron 1121..1430 ignored annotation: /gene="SFTP3" ignored annotation: /note="G00-120-374" ignored annotation: /number=1 ignored annotation: exon 1431..1558 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: intron 1559..2059 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron B" ignored annotation: exon 2060..2131 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: intron 2132..2494 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron C" ignored annotation: exon 2495..2620 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: intron 2621..3446 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron D" ignored annotation: exon 3447..3635 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: intron 3636..3862 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron E" ignored annotation: exon 3863..3952 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: intron 3953..5385 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron F" ignored annotation: exon 5386..5569 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: /number=7 ignored annotation: intron 5570..5741 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron G" ignored annotation: exon 5742..5887 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: /number=8 ignored annotation: variation 5838 ignored annotation: /gene="SFTP3" ignored annotation: /note="c in DNA; t in cDNA" ignored annotation: /replace="t" ignored annotation: intron 5888..7121 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron H" ignored annotation: exon 7122..7202 ignored annotation: /gene="SFTP3" ignored annotation: /note="pulmonary surfactant protein SP-B" ignored annotation: /number=9 ignored annotation: intron 7203..7696 ignored annotation: /gene="SFTP3" ignored annotation: /note="Intron I" ignored annotation: exon 7697..7779 ignored annotation: /gene="SFTP3" ignored annotation: /note="G00-120-374" ignored annotation: /number=10 ignored annotation: intron 7779..9552 ignored annotation: /gene="SFTP3" ignored annotation: /note="G00-120-374" ignored annotation: exon 9553..10375 ignored annotation: /gene="SFTP3" ignored annotation: /note="G00-120-374" ignored annotation: /number=11 ignored annotation: variation 9691 ignored annotation: /gene="SFTP3" ignored annotation: /note="g in DNA; c in cDNA" ignored annotation: /replace="c" ignored annotation: variation 10345 ignored annotation: /gene="SFTP3" ignored annotation: /note="g in DNA; a in cDNA" ignored annotation: /replace="a" ignored annotation: BASE COUNT 2416 a 3059 c 2944 g 2057 t // ** orig/raws/HUMSPBAA:302: missing "mRNA" entry === HUMSPERSYN === locus = HUMSPERSYN ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="Sultan 20D" ignored annotation: /cell_type="IgG myeloma" ignored annotation: /tissue_type="blood" ignored annotation: /map="1p36-p22" ignored annotation: CAAT_signal 1212..1216 ignored annotation: /gene="SRM" ignored annotation: /note="box 1; G00-127-983" ignored annotation: CAAT_signal 1242..1246 ignored annotation: /gene="SRM" ignored annotation: /note="box 2; G00-127-983" ignored annotation: exon 1315..1563 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=1 ignored annotation: /product="spermidine synthase" mRNA = 1315..1563,1995..2115,2448..2540,4584..4737,5247..5330,5415..5560,6255..6377,6454..7132 ignored annotation: /gene="SRM" ignored annotation: /note="G00-127-983" ignored annotation: /product="spermidine synthase" ignored annotation: gene join(1315..1563,1995..2115,2448..2540,4584..4737, ignored annotation: 5247..5330,5415..5560,6255..6377,6454..7132) ignored annotation: /gene="SRM" CDS = 1397..1563,1995..2115,2448..2540,4584..4737,5247..5330,5415..5560,6255..6377,6454..6474 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-127-983" ignored annotation: /product="spermidine synthase" ignored annotation: /db_xref="PID:g338394" translation = MEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKALNDVS ignored annotation: exon 1995..2115 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=2 ignored annotation: /product="spermidine synthase" ignored annotation: exon 2448..2540 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=3 ignored annotation: /product="spermidine synthase" ignored annotation: exon 4584..4737 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=4 ignored annotation: /product="spermidine synthase" ignored annotation: exon 5247..5330 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=5 ignored annotation: /product="spermidine synthase" ignored annotation: exon 5415..5560 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=6 ignored annotation: /product="spermidine synthase" ignored annotation: exon 6255..6377 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=7 ignored annotation: /product="spermidine synthase" ignored annotation: exon 6454..7132 ignored annotation: /gene="SRM" ignored annotation: /EC_number="2.5.1.16" ignored annotation: /note="G00-127-983" ignored annotation: /number=8 ignored annotation: /product="spermidine synthase" ignored annotation: polyA_signal 7126..7132 ignored annotation: /gene="SRM" ignored annotation: /note="putative" ignored annotation: BASE COUNT 1609 a 2287 c 2259 g 1468 t mRNA range 1315..1563 mRNA range 1995..2115 mRNA range 2448..2540 mRNA range 4584..4737 mRNA range 5247..5330 mRNA range 5415..5560 mRNA range 6255..6377 mRNA range 6454..7132 CDS range 1397..1563 CDS range 1995..2115 CDS range 2448..2540 CDS range 4584..4737 CDS range 5247..5330 CDS range 5415..5560 CDS range 6255..6377 CDS range 6454..6474 seq_ini = 1 seq_fin = 7623 i = 6474 last codon bas = gc[tga]gcc last codon lab = EF[DEF]YYY === HUMSTATH2 === locus = HUMSTATH2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="4q11-q13" ignored annotation: gene join(M31077:1601..1931,1..352) ignored annotation: /gene="STATH" ignored annotation: prim_transcript <1..4309 ignored annotation: /note="STATH mRNA and introns" ignored annotation: intron <1..286 ignored annotation: /gene="STATH" ignored annotation: /note="STATH intron A" CDS = 302..352,1532..1552,1645..1674,2728..2814 ignored annotation: /note="statherin precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g338506" translation = MKFLVFAFILALMVSMIGADSSEEKFLRRIGRFGYGYGPYQPVPEQPLYPQPYQPQYQQYTF ignored annotation: exon <302..352 ignored annotation: /gene="STATH" ignored annotation: /note="statherin precursor, (first translated exon); ignored annotation: G00-120-391" ignored annotation: /number=2 ignored annotation: sig_peptide join(302..352,1532..1537) ignored annotation: /note="statherin signal peptide" ignored annotation: intron 353..1531 ignored annotation: /note="STATH intron B" ignored annotation: exon 1532..1552 ignored annotation: /number=3 ignored annotation: mat_peptide join(1538..1552,1645..1674,2728..2811) ignored annotation: /note="statherin" ignored annotation: intron 1553..1644 ignored annotation: /note="STATH intron C" ignored annotation: exon 1645..1674 ignored annotation: /number=4 ignored annotation: intron 1675..2727 ignored annotation: /note="STATH intron D" ignored annotation: exon 2728..>2814 ignored annotation: /note="statherin precursor" ignored annotation: /number=5 ignored annotation: intron 2848..4051 ignored annotation: /note="STATH intron E" ignored annotation: polyA_signal 4294..4299 ignored annotation: BASE COUNT 1570 a 797 c 722 g 1634 t // ** orig/raws/HUMSTATH2:144: missing "mRNA" entry === HUMTDGF1A === locus = HUMTDGF1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="blood" ignored annotation: /map="Unassigned" ignored annotation: exon 2244..2514 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=1 ignored annotation: gene join(2480..2514,3605..3657,3741..3875,4246..4360, ignored annotation: 4459..4568,5643..5761) ignored annotation: /gene="TDGF1" CDS = 2480..2514,3605..3657,3741..3875,4246..4360,4459..4568,5643..5761 ignored annotation: /gene="TDGF1" ignored annotation: /standard_name="CRIPTO-1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-125-188" ignored annotation: /product="teratocarcinoma-derived growth factor 1" ignored annotation: /db_xref="PID:g339431" translation = MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY ignored annotation: intron 2515..3604 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=1 ignored annotation: exon 3605..3657 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=2 ignored annotation: intron 3658..3740 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=2 ignored annotation: exon 3741..3875 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=3 ignored annotation: intron 3876..4245 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=3 ignored annotation: exon 4246..4360 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=4 ignored annotation: intron 4361..4458 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=4 ignored annotation: exon 4459..4568 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=5 ignored annotation: intron 4569..5642 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=5 ignored annotation: exon 5643..6972 ignored annotation: /gene="TDGF1" ignored annotation: /note="G00-125-188" ignored annotation: /number=6 ignored annotation: BASE COUNT 1955 a 1686 c 1638 g 2075 t 1 others 3121 ggcaggagaa ttgcttgaac tggggagggg aggncagtga gccgagatcg caccattgca ** orig/raws/HUMTDGF1A:145: invalid base letter "n" === HUMTFPB === locus = HUMTFPB ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="1p22-p21" ignored annotation: prim_transcript 799..13232 ignored annotation: /note="TF mRNA and introns" CDS = 922..1021,2190..2301,6392..6591,9289..9467,10075..10234,11955..12091 ignored annotation: /gene="F3" ignored annotation: /note="tissue factor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-119-895" ignored annotation: /db_xref="PID:g339506" translation = METPAWPRVPRPETAVARTLLLGWVFAQVAGASGTTNTVAAYNLTWKSTNFKTILEWEPKPVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWKSSSSGKKTAKTNTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVECMGQEKGEFREIFYIIGAVVFVVIILVIILAISLHKCRKAGVGQSWKENSPLNVS ignored annotation: exon <922..1021 ignored annotation: /gene="F3" ignored annotation: /note="tissue factor" ignored annotation: /number=1 ignored annotation: gene join(922..1021,2190..2301,6392..6591,9289..9467, ignored annotation: 10075..10234,11955..12091) ignored annotation: /gene="F3" ignored annotation: intron 1022..2189 ignored annotation: /note="TF intron A" ignored annotation: exon 2190..2301 ignored annotation: /gene="F3" ignored annotation: /number=2 ignored annotation: intron 2302..6391 ignored annotation: /note="TF intron B" ignored annotation: repeat_region 6127..6241 ignored annotation: /note="Alu repeat partial copy A" ignored annotation: exon 6392..6591 ignored annotation: /gene="F3" ignored annotation: /number=3 ignored annotation: intron 6592..9288 ignored annotation: /note="TF intron C" ignored annotation: repeat_region 8391..8677 ignored annotation: /note="Alu repeat copy B" ignored annotation: exon 9289..9467 ignored annotation: /gene="F3" ignored annotation: /number=4 ignored annotation: intron 9468..10074 ignored annotation: /note="TF intron D" ignored annotation: exon 10075..10234 ignored annotation: /gene="F3" ignored annotation: /number=5 ignored annotation: intron 10235..11954 ignored annotation: /note="TF intron E" ignored annotation: repeat_region 10954..11249 ignored annotation: /note="Alu repeat copy C" ignored annotation: exon 11955..>12091 ignored annotation: /gene="F3" ignored annotation: /note="tissue factor" ignored annotation: /number=6 ignored annotation: repeat_region 12458..12757 ignored annotation: /note="Alu repeat copy D" ignored annotation: BASE COUNT 3711 a 2955 c 3240 g 3959 t // ** orig/raws/HUMTFPB:315: missing "mRNA" entry === HUMTHROMA === locus = HUMTHROMA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon <1..158 ignored annotation: /number=1 ignored annotation: intron 159..1826 ignored annotation: /number=1 ignored annotation: exon 1827..1984 ignored annotation: /number=2 CDS = 1972..1984,2216..2343,2630..2716,4649..4816,5053..5718 ignored annotation: /codon_start=1 ignored annotation: /product="thrombopoietin" ignored annotation: /db_xref="PID:g533215" translation = MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRLLLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTTAVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSLDQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPPTGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG ignored annotation: intron 1985..2215 ignored annotation: /number=2 ignored annotation: exon 2216..2343 ignored annotation: /number=3 ignored annotation: intron 2344..2629 ignored annotation: /number=3 ignored annotation: exon 2630..2716 ignored annotation: /number=4 ignored annotation: intron 2717..4648 ignored annotation: /number=4 ignored annotation: exon 4649..4816 ignored annotation: /number=5 ignored annotation: intron 4817..5052 ignored annotation: /number=5 ignored annotation: exon 5053..>6163 ignored annotation: /number=6 ignored annotation: BASE COUNT 1524 a 1706 c 1435 g 1498 t // ** orig/raws/HUMTHROMA:161: missing "mRNA" entry === HUMTHY1A === locus = HUMTHY1A ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="11q22.3-q23" ignored annotation: gene 27..63 ignored annotation: /gene="THY1" ignored annotation: exon <27..63 ignored annotation: /gene="THY1" ignored annotation: /note="Thy-1; G00-119-614" CDS = 27..63,547..882,1410..1522 ignored annotation: /note="Thy-1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g339683" translation = MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL ignored annotation: intron 64..546 ignored annotation: /note="intron A" ignored annotation: exon 547..882 ignored annotation: /number=2 ignored annotation: intron 883..1409 ignored annotation: /note="intron B" ignored annotation: exon 1410..>1522 ignored annotation: /note="Thy-1" ignored annotation: /number=3 ignored annotation: BASE COUNT 612 a 851 c 754 g 589 t // ** orig/raws/HUMTHY1A:91: missing "mRNA" entry === HUMTKRA === locus = HUMTKRA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="17q23.2-q25.3" ignored annotation: prim_transcript 451..13417 ignored annotation: /note="TK mRNA (alt.)" ignored annotation: prim_transcript 458..13417 ignored annotation: /note="TK mRNA (alt.)" ignored annotation: exon <520..585 ignored annotation: /gene="TK1" ignored annotation: /note="thymidine kinase; G00-120-439" ignored annotation: /number=1 ignored annotation: gene 520..585 ignored annotation: /gene="TK1" CDS = 520..585,696..727,2360..2470,4845..4938,11901..11990,12348..12467,12567..12758 ignored annotation: /note="thymidine kinase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g339719" translation = MSCINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIMEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFKKASGQPAGPDNKENCPVPGKPGEAVAARKLFAPQQILQCSPAN ignored annotation: intron 586..695 ignored annotation: /note="TK cds intron A" ignored annotation: exon 696..727 ignored annotation: /number=2 ignored annotation: intron 728..2359 ignored annotation: /note="TK cds intron B" ignored annotation: repeat_region complement(1268..1546) ignored annotation: /note="Alu-tkA repeat" ignored annotation: repeat_region 1697..1994 ignored annotation: /note="Alu-tkB repeat" ignored annotation: exon 2360..2470 ignored annotation: /number=3 ignored annotation: intron 2471..4844 ignored annotation: /note="TK cds intron C" ignored annotation: repeat_region complement(3813..4109) ignored annotation: /note="Alu-tkC repeat" ignored annotation: repeat_region 4393..4661 ignored annotation: /note="Alu-tkD repeat" ignored annotation: exon 4845..4938 ignored annotation: /number=4 ignored annotation: intron 4939..11900 ignored annotation: /note="TK cds intron D" ignored annotation: repeat_region complement(5141..5434) ignored annotation: /note="Alu-tkE repeat" ignored annotation: repeat_region 5471..5765 ignored annotation: /note="Alu-tkF repeat" ignored annotation: repeat_region complement(5962..6259) ignored annotation: /note="Alu-tkG repeat" ignored annotation: repeat_region complement(6263..6552) ignored annotation: /note="Alu-tkH repeat" ignored annotation: repeat_region complement(7434..7731) ignored annotation: /note="Alu-tkI repeat" ignored annotation: repeat_region 8658..8879 ignored annotation: /note="Alu-tkJ repeat" ignored annotation: repeat_region 9350..9646 ignored annotation: /note="Alu-tkK repeat" ignored annotation: repeat_region 9646..9939 ignored annotation: /note="Alu-tkL repeat" ignored annotation: repeat_region 10327..10397 ignored annotation: /note="Alu-tkM repeat" ignored annotation: exon 11901..11990 ignored annotation: /number=5 ignored annotation: intron 11991..12347 ignored annotation: /note="TK cds intron E" ignored annotation: exon 12348..12467 ignored annotation: /number=6 ignored annotation: intron 12468..12566 ignored annotation: /note="TK cds intron F" ignored annotation: exon 12567..>12758 ignored annotation: /note="thymidine kinase" ignored annotation: /number=7 ignored annotation: BASE COUNT 2842 a 3614 c 3578 g 3463 t 3 others 4981 gtgtcctccc gttttccctc gctgacttgg aagttatctg anncttttag taaaataaca ** orig/raws/HUMTKRA:204: invalid base letter "n" === HUMTNFX === locus = HUMTNFX ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: sig_peptide 362..1403 ignored annotation: /note="tumor necrosis factor signal peptide" CDS = 570..755,1362..1407,1595..1642,1944..2365 ignored annotation: /note="tumor necrosis factor precursor" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g339764" translation = MSTESMIRDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQREEFPRDLSLISPLAQAVRSSSRTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL ignored annotation: exon <570..755 ignored annotation: /note="tumor necrosis factor precursor" ignored annotation: /number=1 ignored annotation: sig_peptide 570..755 ignored annotation: /note="tumor necrosis factor signal peptide" ignored annotation: prim_transcript 570..2365 ignored annotation: /note="tumor necrosis factor mRNA and introns" ignored annotation: intron 756..1361 ignored annotation: /note="TNF intron A" ignored annotation: exon 1362..1407 ignored annotation: /number=2 ignored annotation: mat_peptide 1404..1407 ignored annotation: /note="tumor necrosis factor protein" ignored annotation: intron 1408..1594 ignored annotation: /note="TNF intron B" ignored annotation: mat_peptide 1595..1642 ignored annotation: /note="tumor necrosis factor protein" ignored annotation: exon 1595..1642 ignored annotation: /number=3 ignored annotation: intron 1643..1943 ignored annotation: /note="TNF intron C" ignored annotation: mat_peptide 1944..2362 ignored annotation: /note="tumor necrosis factor protein" ignored annotation: exon 1944..>2365 ignored annotation: /note="tumor necrosis factor precursor" ignored annotation: /number=4 ignored annotation: BASE COUNT 784 a 781 c 880 g 658 t // ** orig/raws/HUMTNFX:113: missing "mRNA" entry === HUMTNP1 === locus = HUMTNP1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: /map="2q35-q36" ignored annotation: exon (1074.1076)..1243 ignored annotation: /gene="TNP1" ignored annotation: /note="G00-125-311" ignored annotation: /number=1 ignored annotation: gene join(1105..1243,1444..1472) ignored annotation: /gene="TNP1" CDS = 1105..1243,1444..1472 ignored annotation: /gene="TNP1" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-125-311" ignored annotation: /product="transition protein 1" ignored annotation: /db_xref="PID:g339779" translation = MSTSRKLKSHGMRRSKSRSPHKGVKRGGSKRKYRKGNLKSRKRGDDANRNYRSHL ignored annotation: polyA_signal 1659..1664 ignored annotation: /gene="TNP1" ignored annotation: /note="G00-125-311" ignored annotation: BASE COUNT 487 a 429 c 386 g 446 t // ** orig/raws/HUMTNP1:72: missing "mRNA" entry === HUMTNP2SS === locus = HUMTNP2SS ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="lymphocyte" ignored annotation: /tissue_lib="pWE15" ignored annotation: /map="chromosome 16" ignored annotation: CAAT_signal 150..155 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312" ignored annotation: TATA_signal 166..172 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312" ignored annotation: gene join(258..657,1506..1522) ignored annotation: /gene="TNP2" CDS = 258..657,1506..1522 ignored annotation: /gene="TNP2" ignored annotation: /note="serine tripeptide motif = aa. 48-50 and aa. 64-66" ignored annotation: /codon_start=1 ignored annotation: /db_xref="GDB:G00-125-312" ignored annotation: /product="transition protein 2" ignored annotation: /db_xref="PID:g292828" translation = MDTQTHSLPITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSPMRPTILHCRCPKNRKNLEGKLKKKKMAKRIQQVYKTKTRSSGWKSN ignored annotation: exon <258..657 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312" ignored annotation: intron 658..1505 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312" ignored annotation: exon 1506..>1700 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312" ignored annotation: polyA_signal 1636..1642 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312; putative" ignored annotation: polyA_signal 1695..1700 ignored annotation: /gene="TNP2" ignored annotation: /note="G00-125-312; putative" ignored annotation: BASE COUNT 534 a 378 c 483 g 387 t // ** orig/raws/HUMTNP2SS:88: missing "mRNA" entry === HUMTPA === locus = HUMTPA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /dev_stage="foetus" ignored annotation: /tissue_lib="T.Maniatis" ignored annotation: /map="8p12-q11.2" ignored annotation: /chromosome="8" ignored annotation: repeat_region 740..1033 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 1684..2113 ignored annotation: /rpt_family="KpnI" ignored annotation: gene 3531..36250 ignored annotation: /gene="PLAT" ignored annotation: exon 3531..3712 ignored annotation: /gene="PLAT" ignored annotation: /number=1 ignored annotation: intron 3713..17969 ignored annotation: /gene="PLAT" ignored annotation: /number=1 ignored annotation: repeat_region complement(5669..5958) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(6319..6462) ignored annotation: /note="partial" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(6471..6744) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(7212..7510) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 8864..9176 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 10067..10365 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(10502..10801) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(10802..10937) ignored annotation: /note="partial" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(11745..11868) ignored annotation: /note="partial" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(12704..12985) ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(13027..13142) ignored annotation: /note="partial" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 16794..17125 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 17170..17466 ignored annotation: /rpt_family="Alu" ignored annotation: exon 17970..18067 ignored annotation: /gene="PLAT" ignored annotation: /number=2 CDS = 17996..18067,19767..19809,22105..22242,23160..23270,23603..23777,26008..26099,28291..28462,29470..29555,30806..31001,31113..31249,31425..31565,32428..32594,35337..35495 ignored annotation: /gene="PLAT" ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="plasminogen activator" ignored annotation: /db_xref="PID:g339818" translation = MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARSYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKCCEIDTRATCYEDQGISYRGTWSTAESGAECTNWNSSALAQKPYSGRRPDAIRLGLGNHNYCRNPDRDSKPWCYVFKAGKYSSEFCSTPACSEGNSDCYFGNGSAYRGTHSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNYCRNPDGDAKPWCHVLKNRRLTWEYCDVPSCSTCGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP ignored annotation: sig_peptide join(17996..18067,19767..19790) ignored annotation: /gene="PLAT" ignored annotation: intron 18068..19766 ignored annotation: /gene="PLAT" ignored annotation: /number=2 ignored annotation: repeat_region complement(18628..18796) ignored annotation: /note="partial" ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 18879..19178 ignored annotation: /rpt_family="Alu" ignored annotation: exon 19767..19809 ignored annotation: /gene="PLAT" ignored annotation: /number=3 ignored annotation: mat_peptide join(19791..19809,22105..22242,23160..23270,23603..23777, ignored annotation: 26008..26099,28291..28462,29470..29555,30806..31001, ignored annotation: 31113..31249,31425..31565,32428..32594,35337..35492) ignored annotation: /gene="PLAT" ignored annotation: /product="plasminogen activator" ignored annotation: intron 19810..22104 ignored annotation: /gene="PLAT" ignored annotation: /number=3 ignored annotation: repeat_region 20946..21259 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 21280..21578 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region complement(21640..21938) ignored annotation: /rpt_family="Alu" ignored annotation: exon 22105..22242 ignored annotation: /gene="PLAT" ignored annotation: /number=4 ignored annotation: intron 22243..23159 ignored annotation: /gene="PLAT" ignored annotation: /number=4 ignored annotation: repeat_region 22253..22545 ignored annotation: /rpt_family="Alu" ignored annotation: exon 23160..23270 ignored annotation: /gene="PLAT" ignored annotation: /number=5 ignored annotation: intron 23271..23602 ignored annotation: /gene="PLAT" ignored annotation: /number=5 ignored annotation: exon 23603..23777 ignored annotation: /gene="PLAT" ignored annotation: /number=6 ignored annotation: intron 23778..26007 ignored annotation: /gene="PLAT" ignored annotation: /number=6 ignored annotation: repeat_region 25620..25911 ignored annotation: /rpt_family="Alu" ignored annotation: exon 26008..26099 ignored annotation: /gene="PLAT" ignored annotation: /number=7 ignored annotation: intron 26100..28290 ignored annotation: /gene="PLAT" ignored annotation: /number=7 ignored annotation: repeat_region 26524..26821 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 26941..27239 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 27880..28145 ignored annotation: /rpt_family="Alu" ignored annotation: exon 28291..28462 ignored annotation: /gene="PLAT" ignored annotation: /number=8 ignored annotation: intron 28463..29469 ignored annotation: /gene="PLAT" ignored annotation: /number=8 ignored annotation: repeat_region 28804..29100 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 29297..29431 ignored annotation: /note="partial" ignored annotation: /rpt_family="Alu" ignored annotation: exon 29470..29555 ignored annotation: /gene="PLAT" ignored annotation: /number=9 ignored annotation: intron 29556..30805 ignored annotation: /gene="PLAT" ignored annotation: /number=9 ignored annotation: exon 30806..31001 ignored annotation: /gene="PLAT" ignored annotation: /number=10 ignored annotation: intron 31002..31112 ignored annotation: /gene="PLAT" ignored annotation: /number=10 ignored annotation: exon 31113..31249 ignored annotation: /gene="PLAT" ignored annotation: /number=11 ignored annotation: intron 31250..31424 ignored annotation: /gene="PLAT" ignored annotation: /number=11 ignored annotation: exon 31425..31565 ignored annotation: /gene="PLAT" ignored annotation: /number=12 ignored annotation: intron 31566..32427 ignored annotation: /gene="PLAT" ignored annotation: /number=12 ignored annotation: exon 32428..32594 ignored annotation: /gene="PLAT" ignored annotation: /number=13 ignored annotation: intron 32595..35336 ignored annotation: /gene="PLAT" ignored annotation: /number=13 ignored annotation: repeat_region 32921..33220 ignored annotation: /rpt_family="Alu" ignored annotation: repeat_region 34234..34525 ignored annotation: /rpt_family="Alu" ignored annotation: exon 35337..36250 ignored annotation: /gene="PLAT" ignored annotation: /number=14 ignored annotation: BASE COUNT 9621 a 8696 c 9145 g 9132 t // ** orig/raws/HUMTPA:826: missing "mRNA" entry === HUMTPALBU === locus = HUMTPALBU ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /sex="male" ignored annotation: /tissue_type="placenta" ignored annotation: /tissue_lib="EMBL3" ignored annotation: CAAT_signal 868..872 ignored annotation: /gene="TP" ignored annotation: gene 868..5955 ignored annotation: /gene="TP" ignored annotation: TATA_signal 916..921 ignored annotation: /gene="TP" ignored annotation: exon 944..1093 ignored annotation: /gene="TP" ignored annotation: /number=1 ignored annotation: precursor_RNA 944..5955 ignored annotation: /gene="TP" CDS = 1004..1093,1490..1620,2670..2740,3314..3424,4259..4360,4560..4585 ignored annotation: /gene="TP" ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="tear prealbumin" ignored annotation: /db_xref="PID:g307518" translation = MKPLLLAVSLGLIAALQAHHLLASDEEIQDVSGTWYLKAMTVDREFPEMNLESVTPMTLTTLEGGNLEAKVTMLISGRCQEVKAVLEKTDEPGKYTADGGKHVAYIIRSHVKDHYIFYCEGELHGKPVRGVKLVGRDPKNNLEALEDFEKAAGARGLSTESILIPRQSETCSPGSD ignored annotation: sig_peptide 1004..1057 ignored annotation: /gene="TP" ignored annotation: mat_peptide join(1058..1093,1490..1620,2670..2740,3314..3424, ignored annotation: 4259..4360,4560..4582) ignored annotation: /gene="TP" ignored annotation: /product="tear prealbumin" ignored annotation: intron 1094..1489 ignored annotation: /gene="TP" ignored annotation: /note="TP intron A" ignored annotation: exon 1490..1620 ignored annotation: /gene="TP" ignored annotation: /number=2 ignored annotation: intron 1621..2669 ignored annotation: /gene="TP" ignored annotation: /note="TP intron B" ignored annotation: exon 2670..2740 ignored annotation: /gene="TP" ignored annotation: /number=3 ignored annotation: intron 2741..3313 ignored annotation: /gene="TP" ignored annotation: /note="TP intron C" ignored annotation: exon 3314..3424 ignored annotation: /gene="TP" ignored annotation: /number=4 ignored annotation: intron 3425..4258 ignored annotation: /gene="TP" ignored annotation: /note="TP intron D" ignored annotation: exon 4259..4360 ignored annotation: /gene="TP" ignored annotation: /number=5 ignored annotation: intron 4361..4559 ignored annotation: /gene="TP" ignored annotation: /note="TP intron E" ignored annotation: exon 4560..4586 ignored annotation: /gene="TP" ignored annotation: /number=6 ignored annotation: intron 4587..5771 ignored annotation: /gene="TP" ignored annotation: /note="TP intron F" ignored annotation: exon 5772..5955 ignored annotation: /gene="TP" ignored annotation: /number=7 ignored annotation: polyA_signal 5936..5941 ignored annotation: /gene="TP" ignored annotation: BASE COUNT 1115 a 1958 c 1855 g 1244 t // ** orig/raws/HUMTPALBU:200: missing "mRNA" entry === HUMTRHYAL === locus = HUMTRHYAL ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /tissue_type="placenta" ignored annotation: /map="1q21.1" ignored annotation: CAAT_signal 58..61 ignored annotation: /gene="TRHY" ignored annotation: TATA_signal 117..123 ignored annotation: /gene="TRHY" ignored annotation: exon 138..200 ignored annotation: /number=1 mRNA = 138..200,1476..1644,1507..1644,2512..9120 ignored annotation: /partial ignored annotation: intron 201..1475 ignored annotation: /gene="TRHY" ignored annotation: /number=1 ignored annotation: exon 1476..1644 ignored annotation: /partial ignored annotation: /gene="TRHY" ignored annotation: /number=2 ignored annotation: gene join(1507..1644,2512..8070) ignored annotation: /gene="TRHY" CDS = 1507..1644,2512..8070 ignored annotation: /gene="TRHY" ignored annotation: /codon_start=1 ignored annotation: /product="trichohyalin" ignored annotation: /db_xref="PID:g292836" translation = MSPLLRSICDITEIFNQYVSHDCDGAALTKKDLKNLLEREFGAVLRRPHDPKTVDLILELLDRDSNGRVDFNEFLLFIFKVAQACYYALGQATGLDEEKRARCDGKESLLQDRRTEEDQRRFEPRDRQLEEEPGQRRRQKRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQEREERRAEEEQLQSCKGHETEEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEEEERREQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERLEQLLKREEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERRDERLKREEPEEERRHELLKSEEQEERRHEQLRREQQERREQRLKREEEEERLEQRLKREHEEERREQELAEEEQEQARERIKSRIPKWQWQLESEADARQSKVLLEAPQAGRAEAPQEQEEKRRRESELQWQEEERAHRQQQEEEQRRDFTWQWQAEEKSERGRQRLSARPPLREQRERQLRAEERQQREQRFLPEEEEKEQRGRQRREREKELQFLEEEEQLQRRERAQQLQEEEDGLQEDQERRRQEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQEEEEELQREEREKRRRQEQERQYREEEQLQQEEEQLLREEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEKRRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYREEEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEEEQLLREEREKRRRQELERQYREEEELQRQKRKQRYRDEDQRSDLKWQWEPEKENAVRDNKVYCKGRENEQFRQLEDSQVRDRQSQQDLQHLLGEQQERDREQERRRWQQANRHFPEEEQLEREEQKEAKRRDRKSQEEKQLLREEREEKRRRQETDRKFREEEQLLQEREEQPLLRQERDRKFREEELLHQEQGRKFLEEEQRLREERERKFLKEEQQLRLEEREQLRQDRDRKFREEEQQLSRQERDRKFREEEQQVRRQERERKFLEEEQQLRQERHRKFREEEQLLQEREEQQLHRQERDRKFLEEEQQLRRQERDRKFREQELRSQEPERKFLEEEQQLHRQQRQRKFLQEEQQLRRQERGQQRRQDRDRKFREEEQLRQEREEQQLSRQERDRKFRLEEQKVRRQEQERKFMEDEQQLRRQEGQQQLRQEDRKFREDEQLLQEREEQQLHRQERDRKFLEEEPQLRRQEREQQLRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQQLRRQERERKFLQEEQQLRRQELERKFREEEQLRQETEQEQLRRQERYRKILEEEQLRPEREEQQLRRQERDRKFREEEQLRQGREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDGKYRWEEEQLQLEEQEQRLRQERDRQYRAEEQFATQEKSRREEQELWQEEEQKRRQERERKLREEHIRRQQKEEQRHRQVGEIQSQEGKGHGRLLEPGTHQFASVPVRSSPLYEYIQEQRSQYRP ignored annotation: intron 1645..2511 ignored annotation: /gene="TRHY" ignored annotation: /number=2 ignored annotation: exon 2512..9120 ignored annotation: /gene="TRHY" ignored annotation: polyA_site 9120 ignored annotation: /gene="TRHY" ignored annotation: polyA_signal 9121 ignored annotation: /gene="TRHY" ignored annotation: BASE COUNT 2907 a 1975 c 2869 g 1800 t mRNA range 138..200 mRNA range 1476..1644 mRNA range 1507..1644 // ** orig/raws/HUMTRHYAL:251: lab[1507] = "X" expected "N" === HUMTRPY1B === locus = HUMTRPY1B ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: CAAT_signal 131..135 ignored annotation: /note="putative" ignored annotation: TATA_signal 197..201 ignored annotation: /note="putative" ignored annotation: prim_transcript 225..2072 ignored annotation: /note="tryptase-I mRNA" ignored annotation: intron 248..457 ignored annotation: /note="tryptase-I, intron A" CDS = 458..518,673..844,954..1219,1346..1509,1595..1759 ignored annotation: /note="tryptase-I" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g339977" translation = MLNLLLLALPVLASRAYAAPAPGQALQRVGIVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVNVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPKKP ignored annotation: exon <458..518 ignored annotation: /note="tryptase-I" ignored annotation: /number=1 ignored annotation: intron 519..672 ignored annotation: /note="tryptase-I, intron B" ignored annotation: exon 673..844 ignored annotation: /number=2 ignored annotation: intron 845..953 ignored annotation: /note="tryptase-I, intron C" ignored annotation: exon 954..1219 ignored annotation: /number=3 ignored annotation: intron 1220..1345 ignored annotation: /note="tryptase-I, intron D" ignored annotation: exon 1346..1509 ignored annotation: /number=4 ignored annotation: intron 1510..1594 ignored annotation: /note="tryptase-I, intron E" ignored annotation: exon 1595..>1759 ignored annotation: /note="tryptase-I" ignored annotation: /number=5 ignored annotation: BASE COUNT 422 a 941 c 776 g 470 t // ** orig/raws/HUMTRPY1B:107: missing "mRNA" entry === HUMTS1 === locus = HUMTS1 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: repeat_unit 1..148 ignored annotation: /note="Alu sequence" ignored annotation: repeat_unit 202..477 ignored annotation: /note="Alu sequence" ignored annotation: prim_transcript 822..16246 ignored annotation: /note="thymidylate synthase mRNA and introns" ignored annotation: prim_transcript 824..16246 ignored annotation: /note="thymidylate synthase mRNA and introns" ignored annotation: prim_transcript 828..16246 ignored annotation: /note="thymidylate synthase mRNA and introns" ignored annotation: prim_transcript 841..16246 ignored annotation: /note="thymidylate synthase mRNA and introns" ignored annotation: repeat_unit 862..889 ignored annotation: /note="inverted repeat" ignored annotation: repeat_unit 904..993 ignored annotation: /note="triple tandem repeats" ignored annotation: exon <1001..1205 ignored annotation: /note="thymidylate synthase (part of exon 1)" CDS = 1001..1205,2895..2968,5396..5570,11843..11944,13449..13624,14133..14204,15613..15750 ignored annotation: /note="thymidylate synthase" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:d1000927" ignored annotation: /db_xref="PID:g220136" translation = MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV ignored annotation: intron 1206..2894 ignored annotation: /note="thymidylate synthase intron 1" ignored annotation: protein_bind 1660..1665 ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1890..1895 ignored annotation: /bound_moiety="Sp1" ignored annotation: protein_bind 1895..1900 ignored annotation: /bound_moiety="Sp1" ignored annotation: exon 2895..2968 ignored annotation: /note="thymidylate synthase (exon 2)" ignored annotation: intron 2969..5395 ignored annotation: /note="thymidylate synthase intron 2" ignored annotation: repeat_unit 3049..3347 ignored annotation: /note="Alu sequence" ignored annotation: repeat_unit 4953..5245 ignored annotation: /note="Alu sequence" ignored annotation: exon 5396..5570 ignored annotation: /note="thymidylate synthase (exon 3)" ignored annotation: intron 5571..11842 ignored annotation: /note="thymidylate synthase intron 3" ignored annotation: repeat_unit 5768..9405 ignored annotation: /note="L1 sequence" ignored annotation: repeat_unit 10125..10389 ignored annotation: /note="reiterated motif of GGA/TGAT" ignored annotation: exon 11843..11944 ignored annotation: /note="thymidylate synthase (exon 4)" ignored annotation: intron 11945..13448 ignored annotation: /note="thymidylate synthase intron 4" ignored annotation: repeat_unit 12135..12397 ignored annotation: /note="Alu sequence" ignored annotation: repeat_unit 12567..12743 ignored annotation: /note="Alu sequence" ignored annotation: repeat_unit 12807..13084 ignored annotation: /note="Alu sequence" ignored annotation: exon 13449..13624 ignored annotation: /note="thymidylate synthase (exon 5)" ignored annotation: intron 13625..14132 ignored annotation: /note="thymidylate synthase intron 5" ignored annotation: repeat_unit 13875..14010 ignored annotation: /note="Alu sequence" ignored annotation: exon 14133..14204 ignored annotation: /note="thymidylate synthase (exon 6)" ignored annotation: intron 14205..15612 ignored annotation: /note="thymidylate synthase intron 6" ignored annotation: repeat_unit 14531..14832 ignored annotation: /note="Alu sequence" ignored annotation: exon 15613..>15750 ignored annotation: /note="thymidylate synthase (part of exon 7)" ignored annotation: polyA_signal 15934..15939 ignored annotation: polyA_signal 16228..16233 ignored annotation: repeat_unit 17262..17553 ignored annotation: /note="Alu sequence" ignored annotation: BASE COUNT 4521 a 3991 c 4479 g 5605 t // ** orig/raws/HUMTS1:424: missing "mRNA" entry === HUMTSHB2 === locus = HUMTSHB2 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_type="leukocyte" ignored annotation: intron <1..23 ignored annotation: /note="thyrotropin beta subunit" ignored annotation: /number=1 ignored annotation: exon 24..186 ignored annotation: /partial ignored annotation: /note="thyrotropin beta subunit first expressed exon" ignored annotation: /number=2 CDS = 25..186,635..889 ignored annotation: /note="precursor" ignored annotation: /codon_start=1 ignored annotation: /product="thyrotropin beta subunit" ignored annotation: /db_xref="PID:g339998" translation = MTALFLMSMLFGLACGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYLVGFSV ignored annotation: sig_peptide 25..84 ignored annotation: /note="thyrotropin beta subunit signal peptide" ignored annotation: mat_peptide join(85..186,635..886) ignored annotation: /product="thyrotropin beta subunit" ignored annotation: intron 187..634 ignored annotation: /note="thyrotropin beta subunit" ignored annotation: /number=2 ignored annotation: exon 635..>889 ignored annotation: /note="thyrotropin beta subunit" ignored annotation: /number=3 ignored annotation: BASE COUNT 274 a 188 c 177 g 347 t // ** orig/raws/HUMTSHB2:71: missing "mRNA" entry === HUMUBILP === locus = HUMUBILP ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: prim_transcript 550..3181 ignored annotation: /note="UB-lp mRNA and introns (alt.)" ignored annotation: prim_transcript 550..3443 ignored annotation: /note="UB-lp mRNA and introns (alt.)" CDS = 585..632,836..941,1188..1396,1518..1628 ignored annotation: /note="ubiquitin-like protein" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g340070" translation = MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPLEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERLASRFLHPEVTETMEKGFSK ignored annotation: exon <585..632 ignored annotation: /note="ubiquitin-like protein" ignored annotation: intron 633..835 ignored annotation: /note="UB-lp intron A" ignored annotation: exon 836..941 ignored annotation: /number=2 ignored annotation: intron 942..1187 ignored annotation: /note="UB-lp intron B" ignored annotation: exon 1188..1396 ignored annotation: /number=3 ignored annotation: intron 1397..1517 ignored annotation: /note="UB-lp intron C" ignored annotation: exon 1518..>1628 ignored annotation: /note="ubiquitin-like protein" ignored annotation: /number=4 ignored annotation: BASE COUNT 668 a 1080 c 1174 g 661 t // ** orig/raws/HUMUBILP:110: missing "mRNA" entry === HUMV2R === locus = HUMV2R ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: exon 1..260 ignored annotation: /gene="V2R" ignored annotation: /number=1 ignored annotation: precursor_RNA 1..2276 ignored annotation: /gene="V2R" ignored annotation: gene 1..2276 ignored annotation: /gene="V2R" CDS = 236..260,622..1506,1613..1818 ignored annotation: /gene="V2R" ignored annotation: /note="A second possible start codon is located at ignored annotation: positiom 242-244" ignored annotation: /codon_start=1 ignored annotation: /product="vasopressin V2 receptor" ignored annotation: /db_xref="PID:g398043" translation = MLMASTTSAVPGHPSLPSLPSNSSQERPLDTRDPLLARAELALLSIVFVAVALSNGLVLAALARRGRRGHWAPIHVFIGHLCLADLAVALFQVLPQLAWKATDRFRGPDALCRAVKYLQMVGMYASSYMILAMTLDRHRAICRPMLAYRHGSGAHWNRPVLVAWAFSLLLSLPQLFIFAQRNVEGGSGVTDCWACFAEPWGRRTYVTWIALMVFVAPTLGIAACQVLIFREIHASLVPGPSERPGGRRRGRRTGSPGEGAHVSAAVAKTVRMTLVIVVVYVLCWAPFFLVQLWAAWDPEAPLEGAPFVLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCARGRTPPSLGPQDESCTTASSSLAKDTSS ignored annotation: intron 261..621 ignored annotation: /gene="V2R" ignored annotation: /number=1 ignored annotation: exon 622..1506 ignored annotation: /gene="V2R" ignored annotation: /number=2 ignored annotation: intron 1507..1612 ignored annotation: /gene="V2R" ignored annotation: /number=2 ignored annotation: exon 1613..2276 ignored annotation: /gene="V2R" ignored annotation: /number=3 ignored annotation: BASE COUNT 364 a 755 c 703 g 460 t // ** orig/raws/HUMV2R:94: missing "mRNA" entry === HUMVIPAA === locus = HUMVIPAA ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /map="6q24-q27" ignored annotation: gene 3312..3418 ignored annotation: /gene="VIP" ignored annotation: exon <3312..3418 ignored annotation: /gene="VIP" ignored annotation: /note="vasoactive intestinal protein/PHM-27, (first ignored annotation: translated exon); G00-120-490" ignored annotation: /number=2 CDS = 3312..3418,5295..5417,6398..6502,7263..7394,8225..8270 ignored annotation: /note="vasoactive intestinal protein/PHM-27" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g340254" translation = MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSSNISEDPVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK ignored annotation: intron 3419..5294 ignored annotation: /note="vasoactive intestinal protein/PHM-27 intron A" ignored annotation: exon 5295..5417 ignored annotation: /number=3 ignored annotation: intron 5418..6397 ignored annotation: /note="vasoactive intestinal protein/PHM-27 intron B" ignored annotation: exon 6398..6502 ignored annotation: /number=4 ignored annotation: intron 6503..7262 ignored annotation: /note="vasoactive intestinal protein/PHM-27 intron C" ignored annotation: exon 7263..7394 ignored annotation: /number=5 ignored annotation: intron 7395..8224 ignored annotation: /note="vasoactive intestinal protein/PHM-27 intron D" ignored annotation: exon 8225..>8270 ignored annotation: /note="vasoactive intestinal protein/PHM-27" ignored annotation: /number=6 ignored annotation: BASE COUNT 3616 a 1792 c 1854 g 3699 t // ** orig/raws/HUMVIPAA:240: missing "mRNA" entry === HUNPIV === locus = HUNPIV ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /clone="M92" ignored annotation: /clone_lib="human EMBL-3 Sp6/T7 (Clontech)" ignored annotation: /tissue_type="placenta" ignored annotation: /dev_stage="adult" ignored annotation: /chromosome="8" ignored annotation: CAAT_signal 1702..1706 ignored annotation: TATA_signal 1752..1759 ignored annotation: exon 1824..1862 ignored annotation: TATA_signal 3116..3122 ignored annotation: /note="putative" ignored annotation: exon 3175..3358 ignored annotation: sig_peptide 3187..3243 CDS = 3187..3358,3945..4066 ignored annotation: /citation=[2] ignored annotation: /codon_start=1 ignored annotation: /product="corticostatin/defensin HP-4 precursor" ignored annotation: /db_xref="PID:g665927" translation = MRIIALLAAILLVALQVRAGPLQARGDEAPGQEQRGPEDQDISISFAWDKSSALQVSGSTRGMVCSCRLVFCRRTELRVGNCLIGGVSFTYCCTRVD ignored annotation: exon 3945..4263 ignored annotation: mat_peptide 3962..4063 ignored annotation: /product="corticostatin/defensin HP-4" ignored annotation: BASE COUNT 1334 a 1318 c 1085 g 1387 t // ** orig/raws/HUNPIV:140: missing "mRNA" entry === L29472 === locus = L29472 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: /cell_line="Epstein-Barr virus-transformed" ignored annotation: /haplotype="DR4/Dw4,DPw4 homozygote" ignored annotation: /map="6p21.3" ignored annotation: gene 988..1134 ignored annotation: /gene="HLA-DOB" ignored annotation: exon 988..1134 ignored annotation: /partial ignored annotation: /gene="HLA-DOB" ignored annotation: /note="MHC HLA-DO beta-chain; G00-120-049" ignored annotation: /number=1 ignored annotation: sig_peptide 1044..1121 ignored annotation: /gene="HLA-DOB" ignored annotation: /note="MHC HLA-DO beta-chain signal peptide" CDS = 1044..1134,2679..2948,3387..3668,4154..4264,4516..4547,4736..4771 ignored annotation: /note="MHC HLA-DO beta-chain" ignored annotation: /codon_start=1 ignored annotation: /db_xref="PID:g459825" translation = MGSGWVPWVVALLVNLTQLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLRAQKGYVRTQMSGNEVSRAVLLPQSC ignored annotation: mat_peptide join(1122..1134,2679..2948,3387..3668,4154..4264, ignored annotation: 4516..4547,4736..4768) ignored annotation: /note="MHC HLA-DO beta-chain" ignored annotation: intron 1135..2678 ignored annotation: /note="DOb cds intron A" ignored annotation: exon 2679..2948 ignored annotation: /number=2 ignored annotation: intron 2949..3386 ignored annotation: /note="DOb cds intron B" ignored annotation: exon 3387..3668 ignored annotation: /number=3 ignored annotation: intron 3669..4153 ignored annotation: /note="DOb cds intron C" ignored annotation: exon 4154..4264 ignored annotation: /number=4 ignored annotation: intron 4265..4515 ignored annotation: /note="DOb cds intron D" ignored annotation: exon 4516..4547 ignored annotation: /number=5 ignored annotation: intron 4548..4735 ignored annotation: /note="DOb cds intron E" ignored annotation: exon 4736..5214 ignored annotation: /partial ignored annotation: /note="MHC HLA-DO beta-chain" ignored annotation: /number=6 ignored annotation: BASE COUNT 1371 a 1159 c 1202 g 1713 t 2 others 361 ctaaccataa aacacaataa tgctctctta gattgtatcc tngtgagcct ttttgcaaaa ** orig/raws/L29472:81: invalid base letter "n" === S45332 === locus = S45332 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 1916..8128 ignored annotation: /gene="erythropoietin receptor, Epo receptor" CDS = 1916..2030,2887..3022,4010..4185,4266..4423,4907..5060,5145..5232,7334..7421,7517..8128 ignored annotation: /gene="erythropoietin receptor, Epo receptor" ignored annotation: /note="This sequence comes from Fig. 2; Epo receptor" ignored annotation: /codon_start=1 ignored annotation: /product="erythropoietin receptor" ignored annotation: /db_xref="PID:g255497" translation = MDHLGASLWPQVGSLCLLLAGAAWAPPPNLPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDLDPLILTLSLILVVILVLLTVLALLSHRRALKQKIWPGIPSPESEFEGLFTTHKGNFQLWLYQNDGCLWWSPCTPFTEDPPASLEVLSERCWGTMQAVEPGTDDEGPLLEPVGSEHAQDTYLVLDKWLLPRNPPSEDLPGPGGSVDIVAMDEGSEASSCSSALASKPSPEGASAASFEYTILDPSSQLLRPWTLCPELPPTPPHLKYLYLVVSDSGISTDYSSGDSQGAQGGLSDGPYSNPYENSLIPAAEPLPPSYVACS ignored annotation: BASE COUNT 1855 a 2411 c 2432 g 1949 t // ** orig/raws/S45332:189: missing "mRNA" entry === S63697 === locus = S63697 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 31..1149 ignored annotation: /gene="prepro-melanin-concentrating hormone, prepro-MCH" CDS = 31..279,630..828,1100..1149 ignored annotation: /gene="prepro-melanin-concentrating hormone, prepro-MCH" ignored annotation: /note="This sequence comes from Fig. 5; prepro-MCH" ignored annotation: /codon_start=1 ignored annotation: /product="prepro-melanin-concentrating hormone" ignored annotation: /db_xref="PID:g402796" translation = MAKMNLSSYILILTFSLFSQGILLSASKSIRNLDDDMVFNTSRLGKGFQKEDTAEKSVIAPSLEQYKNDESSFMNEEENKVSKNTGSKHNFLNHGLPLNLAIKPYLALKGSVAFPAENGVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV ignored annotation: BASE COUNT 469 a 227 c 218 g 425 t // ** orig/raws/S63697:61: missing "mRNA" entry === S73906 === locus = S73906 ignored annotation: /organism="Homo sapiens" ignored annotation: /db_xref="taxon:9606" ignored annotation: gene 2357..3297 ignored annotation: /gene="adrenomedullin, AM" CDS = 2357..2454,2605..2754,2988..3297 ignored annotation: /gene="adrenomedullin, AM" ignored annotation: /note="potent hypotensive peptide; This sequence comes ignored annotation: from Fig. 2A and 2B; AM" ignored annotation: /codon_start=1 ignored annotation: /product="adrenomedullin" ignored annotation: /db_xref="PID:g765330" translation = MKLVSVALMYLGSLAFLGADTARLDVASEFRKKWNKWALSRGKRELRMSSSYPTGLADVKAGPAQTLIRPQDMKGASRSPEDSSPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKLAHQIYQFTDKDKDNVAPRSKISPQGYGRRRRRSLPEAGPGRTLVSSKPQAHGAPAPPSGSAPHFL ignored annotation: BASE COUNT 916 a 1345 c 1386 g 959 t // ** orig/raws/S73906:115: missing "mRNA" entry