# Last edited on 2008-06-08 14:23:40 by stolfi

Bioinformatics and Proteomics/Genomic Databases

  The Exon-Intron Database

  An exhaustive database of protein-coding intron-containing genes
  Serge Saxonov, Iraj Daizadeh, Alexei Fedorov, and Walter Gilbert
  Nucleic Acids Res. 2000 Jan 1;28(1):185-190.

[...]

New Releases of Exon-Intron Database, September 2005

 Species name              | EID               | UID               | ILD                
 Human (GenBank 35.1)      | hs35p1.EID.tar.gz | hs35p1.UID.tar.gz | hs35p1.ILD.tar.gz  
 Mouse (GenBank 34.1)      | mm34p1.EID.tar.gz | mm34p1.UID.tar.gz | mm34p1.ILD.tar.gz  
 Rat (GenBank 3.1)         | rn3p1.EID.tar.gz  | rn3p1.EID.tar.gz  | rn3p1.EID.tar.gz   
 Dog (GenBank 2.1)         | cfa2p1.EID.tar.gz | cfa2p1.UID.tar.gz | cfa2p1.ILD.tar.gz  
 Chicken (GenBank 1.1)     | gga1p1.EID.tar.gz | gga1p1.UID.tar.gz | gga1p1.ILD.tar.gz  
 Danio rerio (release Zv4) | drzv4.EID.tar.gz  | drzv4.UID.tar.gz  | drzv4.ILD.tar.gz   
 C. elegans (GenBank 2003) | ce2003.EID.tar.gz | ce2003.UID.tar.gz | ce2003.ILD.tar.gz  
 D. melanogaster (4.1)     | dm4p1.EID.tar.gz  | dm4p1.UID.tar.gz  | dm4p1.ILD.tar.gz   
 A. thaliana (2004)        | at2004.EID.tar.gz | at2004.EID.tar.gz | at2004.EID.tar.gz  


gb149 (original EID)

MOID release 2 September 2005 (MOID_Sept05.tar.gz)

Instructions README_Sept05

README - Explanations about new releases of Exon-Intron Database (EID)

SNO.pl -- This program searches for conserved structures characteristic for C/D box snoRNA

TARGETmrna.pl -- This program searches for the targets of
  snoRNA antisense elements among all mRNA sequences of human, mouse and rat

57snoRNA