LOCUS       CM000365              949497 bp    DNA     linear   CON 14-JUL-2016
DEFINITION  Drosophila simulans chromosome 4, whole genome shotgun sequence.
ACCESSION   CM000365
VERSION     CM000365.1
DBLINK      BioProject: PRJNA18237
            BioSample: SAMN02953618
KEYWORDS    WGS.
SOURCE      Drosophila simulans
  ORGANISM  Drosophila simulans
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 949497)
  AUTHORS   Clark,A.G., Eisen,M.B., et al.
  CONSRTM   Drosophila 12 Genomes Consortium
  TITLE     Evolution of genes and genomes on the Drosophila phylogeny
  JOURNAL   Nature 450 (7167), 203-218 (2007)
   PUBMED   17994087
REFERENCE   2  (bases 1 to 949497)
  AUTHORS   Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2006) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park Parkway, St. Louis,
            MO 63108, USA
REFERENCE   3  (bases 1 to 949497)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2008) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA
COMMENT     This is the CAF1 assembly of the Drosophila simulans genome. It
            represents a mosaic of several different D. simulans lines. The
            assembly process began with a 4x WGS assembly of the the D.
            simulans white501 (w501) line, AAGH00000000. The w501 contigs were
            initially anchored, ordered and oriented by alignment with the D.
            melanogaster genome. The assembly was then examined for places
            where the w501 assembly suggested inversions with respect to the D.
            melanogaster assembly. One major inversion was found, confirming
            the already documented inversion found by Lemeunier and Ashburner
            (1976). Six other D. simulans lines (C167.4, MD106TS, MD199S, New
            Caledonia 48S, SIM4, and SIM6) were assembled with approximately 1x
            coverage (WGS projects AASR00000000-AASW00000000, respectively).
            The 4x WGS assembly of the D. simulans w501 genome was used as a
            scaffold, and the contigs and unplaced reads from the 1x assemblies
            of the other individual D. simulans lines were used to cover gaps
            in the w501 assembly where possible. Thus the resulting assembly is
            a mosaic containing the w501 contigs as the primary scaffolding,
            with contigs and unplaced reads from the other lines filling gaps
            in the w501 assembly.  Total size is 142,405,747 bp including gaps
            and 127,241,461 bp excluding gaps.  For more information about the
            D. simulans assembly and statistics, see the WUSTL Genome
            Sequencing Center Drosophila simulans web page from the home page,
            http://genome.wustl.edu/home.cgi.
            The gene annotation is based on FlyBase Release 1.3, which contains
            some corrections of the original annotation published by the
            Drosophila 12 Genomes Consortium.