> 1_NC_003279 protein_id:17510631; Caenorhabditis elegans chromosome I, complete sequence. /gene="1A478"; intron(phase:0000,position:19,59,156,190); exon(number:5,size:18,40,97,34,45,sum:234); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(4221..4358,5195..5296,6037..6327, 9727..9846,10095..10148)) /gene="1A478" /locus_tag="1A478" /codon_start=1 /evidence=experimental /product="AD-003 protein (26.6 kD) (1A478)" /protein_id="17510631" /db_xref="GI:17510631" /db_xref="AceView/WormGenes:1A478" /db_xref="LocusID:171590" // > 4_NC_003279 protein_id:17510637; Caenorhabditis elegans chromosome I, complete sequence. /gene="1A502"; intron(phase:1020200,position:71,127,170,272,490,580,617); exon(number:8,size:70,56,43,102,218,90,37,41,sum:657); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(28280..28405,28916..29026,29100..29367, 29769..30424,31769..32072,32412..32542,32599..32765, 34695..34905)) /gene="1A502" /locus_tag="1A502" /codon_start=1 /evidence=experimental /product="sestrin (1A502)" /protein_id="17510637" /db_xref="GI:17510637" /db_xref="AceView/WormGenes:1A502" /db_xref="LocusID:171593" // > 24_NC_003279 protein_id:17508519; Caenorhabditis elegans chromosome I, complete sequence. /gene="ptr-11"; intron(phase:1200102020211,position:24,58,98,135,171,201,332,369,479,504,580,678,774); exon(number:14,size:23,34,40,37,36,30,131,37,110,25,76,98,96,47,sum:820); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(160404..160546,160712..160999, 161597..161889,162368..162597,162645..162717, 163099..163430,163500..163608,163809..164203, 164677..164765,164900..165008,165377..165487, 165543..165660,166002..166104,166747..166816)) /gene="ptr-11" /locus_tag="1A634" /codon_start=1 /evidence=experimental /product="PaTched Related (90.7 kD) (ptr-11)" /protein_id="17508519" /db_xref="GI:17508519" /db_xref="AceView/WormGenes:ptr-11" /db_xref="LocusID:171609" // > 51_NC_003279 protein_id:17510093; Caenorhabditis elegans chromosome I, complete sequence. /gene="1A809"; intron(phase:2100,position:51,86,193,338); exon(number:5,size:50,35,107,145,51,sum:388); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(332614..332765,332847..332950,333792..334111, 335710..336144,337566..337721) /gene="1A809" /locus_tag="1A809" /codon_start=1 /evidence=experimental /product="ankyrin and Zn-finger, MYND type (1A809)" /protein_id="17510093" /db_xref="GI:17510093" /db_xref="AceView/WormGenes:1A809" /db_xref="LocusID:171623" // > 108_NC_003279 protein_id:17508903; Caenorhabditis elegans chromosome I, complete sequence. /gene="1B234"; intron(phase:100,position:15,48,156); exon(number:4,size:14,33,108,12,sum:167); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(760951..760989,761046..761369, 761622..761719,761796..761838)) /gene="1B234" /locus_tag="1B234" /codon_start=1 /product="putative nuclear protein (1B234)" /protein_id="17508903" /db_xref="GI:17508903" /db_xref="AceView/WormGenes:1B234" /db_xref="LocusID:188157" // > 109_NC_003279 protein_id:17508905; Caenorhabditis elegans chromosome I, complete sequence. /gene="1B243"; intron(phase:0200010011,position:51,96,168,237,277,315,366,386,444,487); exon(number:11,size:50,45,72,69,40,38,51,20,58,43,54,sum:540); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(763677..763826,765140..765276,765434..765647, 766050..766256,766328..766447,766529..766643, 767585..767736,768167..768226,768276..768450, 768502..768630,770464..770627) /gene="1B243" /locus_tag="1B243" /codon_start=1 /evidence=experimental /product="carboxypeptidase activation peptide and zinc carboxypeptidase A metalloprotease and metridin-like ShK toxin precursor family member (1B243)" /protein_id="17508905" /db_xref="GI:17508905" /db_xref="AceView/WormGenes:1B243" /db_xref="LocusID:171668" // > 116_NC_003279 protein_id:17510729; Caenorhabditis elegans chromosome I, complete sequence. /gene="1B338"; intron(phase:002200201,position:109,140,166,184,202,236,305,682,713); exon(number:10,size:108,31,26,18,18,34,69,377,31,48,sum:760); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(873483..873628,874651..874744, 875523..876651,877708..877916,878219..878320, 878408..878459,879485..879538,879594..879673, 881111..881203,882392..882715)) /gene="1B338" /locus_tag="1B338" /codon_start=1 /evidence=experimental /product="phosphodiesterase 8 (1B338)" /protein_id="17510729" /db_xref="GI:17510729" /db_xref="AceView/WormGenes:1B338" /db_xref="LocusID:190808" // > 138_NC_003279 protein_id:25143453; Caenorhabditis elegans chromosome I, complete sequence. /gene="1B535"; intron(phase:02,position:104,239); exon(number:3,size:103,135,88,sum:326); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(1062449..1062757,1063602..1064008,1064656..1064920) /gene="1B535" /locus_tag="1B535" /codon_start=1 /evidence=experimental /product="rhodopsin-like GPCR superfamily (36.6 kD) (1B535)" /protein_id="25143453" /db_xref="GI:25143453" /db_xref="AceView/WormGenes:1B535" /db_xref="LocusID:189587" // > 157_NC_003279 protein_id:32564123; Caenorhabditis elegans chromosome I, complete sequence. /gene="1B759"; intron(phase:2021120,position:27,63,93,140,200,220,244); exon(number:8,size:26,36,30,47,60,20,24,39,sum:282); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(1283275..1283354,1283726..1283831,1283902..1283993, 1284145..1284284,1284579..1284758,1284805..1284865, 1284908..1284977,1285165..1285284) /gene="1B759" /locus_tag="1B759" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil-4 domain, of bilaterial origin (1B759)" /protein_id="32564123" /db_xref="GI:32564123" /db_xref="AceView/WormGenes:1B759" /db_xref="LocusID:171702" // > 161_NC_003279 protein_id:17508217; Caenorhabditis elegans chromosome I, complete sequence. /gene="smo-1"; intron(phase:02,position:23,56); exon(number:3,size:22,33,36,sum:91); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(1340704..1340769,1340826..1340926,1340977..1341085) /gene="smo-1" /locus_tag="1B815" /codon_start=1 /evidence=experimental /product="SUMO, small ubiquitin-like modifier, SUMO, small ubiquitin-like modifier SMO-1 (10.2 kD) (smo-1)" /protein_id="17508217" /db_xref="GI:17508217" /db_xref="AceView/WormGenes:smo-1" /db_xref="LocusID:266820" // > 170_NC_003279 protein_id:17510697; Caenorhabditis elegans chromosome I, complete sequence. /gene="1B888"; intron(phase:2012,position:23,55,84,121); exon(number:5,size:22,32,29,37,57,sum:177); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(1414069..1414240,1415239..1415350, 1415401..1415488,1415554..1415647,1415727..1415794)) /gene="1B888" /locus_tag="1B888" /codon_start=1 /evidence=experimental /product="putative protein (21.0 kD) (1B888)" /protein_id="17510697" /db_xref="GI:17510697" /db_xref="AceView/WormGenes:1B888" /db_xref="LocusID:171706" // > 234_NC_003279 protein_id:32564625; Caenorhabditis elegans chromosome I, complete sequence. /gene="1C445"; intron(phase:121,position:42,198,294); exon(number:4,size:41,156,96,44,sum:337); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(1967820..1967943,1969758..1970226,1972608..1972894, 1973561..1973694) /gene="1C445" /locus_tag="1C445" /codon_start=1 /evidence=experimental /product="putative membrane protein family member of bilaterial origin (1C445)" /protein_id="32564625" /db_xref="GI:32564625" /db_xref="AceView/WormGenes:1C445" /db_xref="LocusID:259367" // > 276_NC_003279 protein_id:17509917; Caenorhabditis elegans chromosome I, complete sequence. /gene="1C889"; intron(phase:0122,position:28,75,249,292); exon(number:5,size:27,47,174,43,183,sum:474); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(2316310..2316390,2316447..2316588,2316648..2317170, 2317216..2317344,2317393..2317942) /gene="1C889" /locus_tag="1C889" /codon_start=1 /evidence=experimental /product="putative nuclear protein (53.9 kD) (1C889)" /protein_id="17509917" /db_xref="GI:17509917" /db_xref="AceView/WormGenes:1C889" /db_xref="LocusID:189772" // > 277_NC_003279 protein_id:17508417; Caenorhabditis elegans chromosome I, complete sequence. /gene="lin-6"; intron(phase:112012,position:25,44,119,196,652,723); exon(number:7,size:24,19,75,77,456,71,101,sum:823); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(2318428..2318731,2319071..2319284, 2319334..2320702,2321054..2321282,2321329..2321554, 2321625..2321681,2321739..2321811)) /gene="lin-6" /locus_tag="1C888" /codon_start=1 /evidence=experimental /product="DNA replication licensing factor Mini Chromosome Maintenance, abnormal cell LINeage LIN-6, LEThal LET-358 (91.6 kD) (lin-6)" /protein_id="17508417" /db_xref="GI:17508417" /db_xref="AceView/WormGenes:lin-6" /db_xref="LocusID:171793" // > 291_NC_003279 protein_id:17506775; Caenorhabditis elegans chromosome I, complete sequence. /gene="1C998"; intron(phase:2100,position:16,122,224,286); exon(number:5,size:15,106,102,62,16,sum:301); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(2429773..2429823,2429952..2430137, 2431416..2431720,2431798..2432114,2432536..2432582)) /gene="1C998" /locus_tag="1C998" /codon_start=1 /evidence=experimental /product="kinase serine threonine 22 (1C998)" /protein_id="17506775" /db_xref="GI:17506775" /db_xref="AceView/WormGenes:1C998" /db_xref="LocusID:171802" // > 300_NC_003279 protein_id:17510641; Caenorhabditis elegans chromosome I, complete sequence. /gene="1D38"; intron(phase:21,position:20,91); exon(number:3,size:19,71,67,sum:157); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(2468966..2469168,2470852..2471063, 2471870..2471928)) /gene="1D38" /locus_tag="1D38" /codon_start=1 /evidence=experimental /product="small membrane protein 1 (17.4 kD) (1D38)" /protein_id="17510641" /db_xref="GI:17510641" /db_xref="AceView/WormGenes:1D38" /db_xref="LocusID:171806" // > 332_NC_003279 protein_id:17507081; Caenorhabditis elegans chromosome I, complete sequence. /gene="1D256"; intron(phase:122111,position:21,39,170,212,220,288); exon(number:7,size:20,18,131,42,8,68,140,sum:427); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(2686699..2687120,2687691..2687894, 2687951..2687974,2689087..2689211,2689271..2689663, 2691134..2691188,2691746..2691806)) /gene="1D256" /locus_tag="1D256" /codon_start=1 /evidence=experimental /product="cathepsin Z (1D256)" /protein_id="17507081" /db_xref="GI:17507081" /db_xref="AceView/WormGenes:1D256" /db_xref="LocusID:171829" // > 337_NC_003279 protein_id:17510535; Caenorhabditis elegans chromosome I, complete sequence. /gene="dnj-30"; intron(phase:002,position:11,118,172); exon(number:4,size:10,107,54,67,sum:238); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(2718129..2718330,2719105..2719268, 2720671..2720991,2721441..2721470)) /gene="dnj-30" /locus_tag="1D286" /codon_start=1 /evidence=experimental /product="DNaJ domain (prokaryotic heat shock protein) (dnj-30)" /protein_id="17510535" /db_xref="GI:17510535" /db_xref="AceView/WormGenes:dnj-30" /db_xref="LocusID:171833" // > 354_NC_003279 protein_id:17509513; Caenorhabditis elegans chromosome I, complete sequence. /gene="1D365"; intron(phase:2001,position:5,60,113,160); exon(number:5,size:4,55,53,47,46,sum:205); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(2796384..2796397,2796499..2796661,2796711..2796869, 2796919..2797060,2797123..2797262) /gene="1D365" /locus_tag="1D365" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (1D365)" /protein_id="17509513" /db_xref="GI:17509513" /db_xref="AceView/WormGenes:1D365" /db_xref="LocusID:189156" // > 373_NC_003279 protein_id:17510485; Caenorhabditis elegans chromosome I, complete sequence. /gene="1D464"; intron(phase:12101,position:16,351,752,855,1141); exon(number:6,size:15,335,401,103,286,92,sum:1232); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(2895563..2895840,2895903..2896761, 2896815..2897122,2897651..2898852,2899699..2900704, 2900757..2900802)) /gene="1D464" /locus_tag="1D464" /codon_start=1 /evidence=experimental /product="coatomer (137.7 kD) (1D464)" /protein_id="17510485" /db_xref="GI:17510485" /db_xref="AceView/WormGenes:1D464" /db_xref="LocusID:171860" // > 411_NC_003279 protein_id:17510305; Caenorhabditis elegans chromosome I, complete sequence. /gene="1D731"; intron(phase:000,position:47,117,151); exon(number:4,size:46,70,34,91,sum:241); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(3162517..3162654,3162814..3163023,3163085..3163186, 3163239..3163514) /gene="1D731" /locus_tag="1D731" /codon_start=1 /evidence=experimental /product="mitochondrial ribosomal protein L17 (1D731)" /protein_id="17510305" /db_xref="GI:17510305" /db_xref="AceView/WormGenes:1D731" /db_xref="LocusID:171889" // > 498_NC_003279 protein_id:17511099; Caenorhabditis elegans chromosome I, complete sequence. /gene="1E341"; intron(phase:12000000210120,position:18,84,126,199,258,338,379,425,477,510,564,634,660,748); exon(number:15,size:17,66,42,73,59,80,41,46,52,33,54,70,26,88,48,sum:795); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(3769574..3769625,3769675..3769873,3769922..3770045, 3770094..3770312,3770465..3770641,3771011..3771250, 3771529..3771651,3771722..3771859,3772219..3772376, 3772423..3772520,3772563..3772723,3772850..3773060, 3773112..3773190,3773280..3773541,3773732..3773878) /gene="1E341" /locus_tag="1E341" /codon_start=1 /product="degenerin mec-4 family member (1E341)" /protein_id="17511099" /db_xref="GI:17511099" /db_xref="AceView/WormGenes:1E341" /db_xref="LocusID:191422" // > 504_NC_003279 protein_id:17505793; Caenorhabditis elegans chromosome I, complete sequence. /gene="rpl-13"; intron(phase:200,position:56,112,141); exon(number:4,size:55,56,29,67,sum:207); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(3788044..3788210,3788255..3788420,3788471..3788557, 3788661..3788864) /gene="rpl-13" /locus_tag="1E357" /codon_start=1 /evidence=experimental /product="ribosomal protein L13, Ribosomal Protein, Large subunit (23.8 kD) (rpl-13)" /protein_id="17505793" /db_xref="GI:17505793" /db_xref="AceView/WormGenes:rpl-13" /db_xref="LocusID:171949" // > 542_NC_003279 protein_id:17509109; Caenorhabditis elegans chromosome I, complete sequence. /gene="1E501"; intron(phase:2102,position:88,381,628,724); exon(number:5,size:87,293,247,96,30,sum:753); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(3932214..3932476,3932525..3933402,3933451..3934190, 3934261..3934550,3934627..3934717) /gene="1E501" /locus_tag="1E501" /codon_start=1 /evidence=experimental /product="protein tyrosine phosphatase family member (86.1 kD) (1E501)" /protein_id="17509109" /db_xref="GI:17509109" /db_xref="AceView/WormGenes:1E501" /db_xref="LocusID:171980" // > 594_NC_003279 protein_id:17505657; Caenorhabditis elegans chromosome I, complete sequence. /gene="1E775"; intron(phase:020121120,position:26,66,109,142,185,380,597,744,793); exon(number:10,size:25,40,43,33,43,195,217,147,49,101,sum:893); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4203462..4203536,4203605..4203726,4203774..4203900, 4203959..4204058,4204113..4204242,4204730..4205313, 4205815..4206465,4206957..4207398,4207450..4207594, 4208032..4208337) /gene="1E775" /locus_tag="1E775" /codon_start=1 /evidence=experimental /product="putative protein (102.4 kD) (1E775)" /protein_id="17505657" /db_xref="GI:17505657" /db_xref="AceView/WormGenes:1E775" /db_xref="LocusID:172016" // > 595_NC_003279 protein_id:17507977; Caenorhabditis elegans chromosome I, complete sequence. /gene="hop-1"; intron(phase:20110,position:44,86,215,263,292); exon(number:6,size:43,42,129,48,29,67,sum:358); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(4208594..4208797,4209139..4209224, 4209274..4209417,4209599..4209986,4210038..4210161, 4210212..4210342)) /gene="hop-1" /locus_tag="1E778" /codon_start=1 /evidence=experimental /product="homolog Of Presenilin (hop-1)" /protein_id="17507977" /db_xref="GI:17507977" /db_xref="AceView/WormGenes:hop-1" /db_xref="LocusID:172017" // > 601_NC_003279 protein_id:25143868; Caenorhabditis elegans chromosome I, complete sequence. /gene="ndx-7"; intron(phase:1101,position:19,143,190,231); exon(number:5,size:18,124,47,41,65,sum:295); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(4239173..4239369,4241267..4241390, 4241434..4241573,4241728..4242099,4242673..4242727)) /gene="ndx-7" /locus_tag="1E808" /codon_start=1 /evidence=experimental /product="NuDiX hydrolase, similar to mouse testosterone-regulated RP2 protein (ndx-7)" /protein_id="25143868" /db_xref="GI:25143868" /db_xref="AceView/WormGenes:ndx-7" /db_xref="LocusID:183413" // > 605_NC_003279 protein_id:32564094; Caenorhabditis elegans chromosome I, complete sequence. /gene="1E823"; intron(phase:0,position:111); exon(number:2,size:110,74,sum:184); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4253243..4253572,4253621..4253845) /gene="1E823" /locus_tag="1E823" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (1E823)" /protein_id="32564094" /db_xref="GI:32564094" /db_xref="AceView/WormGenes:1E823" /db_xref="LocusID:259372" // > 618_NC_003279 protein_id:17511135; Caenorhabditis elegans chromosome I, complete sequence. /gene="1E929"; intron(phase:001,position:56,100,127); exon(number:4,size:55,44,27,28,sum:154); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4363416..4363580,4363636..4363767,4363813..4363894, 4363952..4364037) /gene="1E929" /locus_tag="1E929" /codon_start=1 /product="predicted CDS, putative protein (1E929)" /protein_id="17511135" /db_xref="GI:17511135" /db_xref="AceView/WormGenes:1E929" /db_xref="LocusID:191478" // > 625_NC_003279 protein_id:17511129; Caenorhabditis elegans chromosome I, complete sequence. /gene="1E953"; intron(phase:222200,position:193,307,429,615,667,689); exon(number:7,size:192,114,122,186,52,22,57,sum:745); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4382566..4383143,4383194..4383535,4383588..4383953, 4384005..4384562,4384613..4384766,4384813..4384878, 4384925..4385098) /gene="1E953" /locus_tag="1E953" /codon_start=1 /evidence=experimental /product="RNA binding S1 (1E953)" /protein_id="17511129" /db_xref="GI:17511129" /db_xref="AceView/WormGenes:1E953" /db_xref="LocusID:172040" // > 626_NC_003279 protein_id:17506419; Caenorhabditis elegans chromosome I, complete sequence. /gene="dhc-1"; intron(phase:02110020201200,position:225,467,798,1401,1640,1771,2115,2474,2584,3808,3861,4143,4437,4523); exon(number:15,size:224,242,331,603,239,131,344,359,110,1224,53,282,294,86,46,sum:4568); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4386791..4387462,4387510..4388237,4388285..4389276, 4389692..4391500,4391553..4392268,4392317..4392709, 4392797..4393830,4393881..4394955,4395152..4395483, 4395559..4399228,4399278..4399437,4399485..4400331, 4400378..4401257,4401307..4401564,4401616..4401756) /gene="dhc-1" /locus_tag="1E969" /codon_start=1 /evidence=experimental /product="dynein heavy chain, LEThal LET-354 (dhc-1)" /protein_id="17506419" /db_xref="GI:17506419" /db_xref="AceView/WormGenes:dhc-1" /db_xref="LocusID:172041" // > 662_NC_003279 protein_id:17506025; Caenorhabditis elegans chromosome I, complete sequence. /gene="1F177"; intron(phase:101011201,position:38,94,200,223,253,413,481,555,646); exon(number:10,size:37,56,106,23,30,160,68,74,91,53,sum:698); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4605690..4605801,4605852..4606018,4606115..4606433, 4606485..4606552,4607035..4607125,4607464..4607943, 4608714..4608918,4609280..4609499,4609633..4609906, 4609954..4610114) /gene="1F177" /locus_tag="1F177" /codon_start=1 /evidence=experimental /product="chronic myelogenous leukemia tumor antigen 66 like (1F177)" /protein_id="17506025" /db_xref="GI:17506025" /db_xref="AceView/WormGenes:1F177" /db_xref="LocusID:172067" // > 704_NC_003279 protein_id:17507589; Caenorhabditis elegans chromosome I, complete sequence. /gene="1F371"; intron(phase:20012,position:47,93,185,228,342); exon(number:6,size:46,46,92,43,114,60,sum:401); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(4800099..4800238,4800890..4801025,4801785..4802060, 4802452..4802581,4802931..4803273,4803992..4804172) /gene="1F371" /locus_tag="1F371" /codon_start=1 /product="gonadotropin-releasing hormone receptor (1F371)" /protein_id="17507589" /db_xref="GI:17507589" /db_xref="AceView/WormGenes:1F371" /db_xref="LocusID:186230" // > 770_NC_003279 protein_id:25150926; Caenorhabditis elegans chromosome I, complete sequence. /gene="1F699"; intron(phase:0002,position:71,110,214,270); exon(number:5,size:70,39,104,56,43,sum:312); {splice:gtag,gtag,gtag,gcag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5129782..5129991,5130049..5130165,5130228..5130539, 5130702..5130871,5130921..5131050) /gene="1F699" /locus_tag="1F699" /codon_start=1 /product="lipase family like precursor (1F699)" /protein_id="25150926" /db_xref="GI:25150926" /db_xref="AceView/WormGenes:1F699" /db_xref="LocusID:190947" // > 783_NC_003279 protein_id:17507663; Caenorhabditis elegans chromosome I, complete sequence. /gene="1F759"; intron(phase:2020210022002,position:103,133,169,270,317,464,523,583,612,654,690,723,757); exon(number:14,size:102,30,36,101,47,147,59,60,29,42,36,33,34,27,sum:783); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5190151..5190458,5190530..5190617,5190667..5190776, 5190823..5191123,5191617..5191759,5191804..5192243, 5192292..5192467,5192669..5192848,5192898..5192986, 5193032..5193157,5193553..5193658,5193919..5194017, 5194066..5194169,5195044..5195125) /gene="1F759" /locus_tag="1F759" /codon_start=1 /evidence=experimental /product="putative protein (1F759)" /protein_id="17507663" /db_xref="GI:17507663" /db_xref="AceView/WormGenes:1F759" /db_xref="LocusID:172159" // > 820_NC_003279 protein_id:17505671; Caenorhabditis elegans chromosome I, complete sequence. /gene="1F951"; intron(phase:12,position:8,126); exon(number:3,size:7,118,61,sum:186); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5380163..5380184,5381185..5381539,5382849..5383032) /gene="1F951" /locus_tag="1F951" /codon_start=1 /product="predicted CDS, putative protein (1F951)" /protein_id="17505671" /db_xref="GI:17505671" /db_xref="AceView/WormGenes:1F951" /db_xref="LocusID:182832" // > 833_NC_003279 protein_id:17506925; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G10"; intron(phase:20,position:17,58); exon(number:3,size:16,41,11,sum:68); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(5443815..5443850,5443908..5444028, 5444073..5444122)) /gene="1G10" /locus_tag="1G10" /codon_start=1 /product="predicted CDS, putative protein (1G10)" /protein_id="17506925" /db_xref="GI:17506925" /db_xref="AceView/WormGenes:1G10" /db_xref="LocusID:185011" // > 886_NC_003279 protein_id:17509089; Caenorhabditis elegans chromosome I, complete sequence. /gene="dnj-21"; intron(phase:01,position:43,91); exon(number:3,size:42,48,22,sum:112); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5676839..5676964,5677014..5677158,5677504..5677571) /gene="dnj-21" /locus_tag="1G245" /codon_start=1 /evidence=experimental /product="DNaJ domain (prokaryotic heat shock protein) (11.7 kD) (dnj-21)" /protein_id="17509089" /db_xref="GI:17509089" /db_xref="AceView/WormGenes:dnj-21" /db_xref="LocusID:172231" // > 889_NC_003279 protein_id:17509085; Caenorhabditis elegans chromosome I, complete sequence. /gene="npp-7"; intron(phase:100022,position:66,120,322,553,1123,1197); exon(number:7,size:65,54,202,231,570,74,21,sum:1217); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5692269..5692464,5692539..5692699,5692793..5693398, 5693607..5694299,5694577..5696288,5696337..5696558, 5696628..5696691) /gene="npp-7" /locus_tag="1G265" /codon_start=1 /evidence=experimental /product="nucleoporin FG repeat, Nuclear Pore complex Protein NPP-7 (npp-7)" /protein_id="17509085" /db_xref="GI:17509085" /db_xref="AceView/WormGenes:npp-7" /db_xref="LocusID:172234" // > 890_NC_003279 protein_id:17509083; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G275"; intron(phase:01102210202,position:47,63,114,190,275,384,482,512,564,587,667); exon(number:12,size:46,16,51,76,85,109,98,30,52,23,80,13,sum:679); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5702161..5702298,5702776..5702824,5703123..5703275, 5703319..5703545,5703590..5703846,5703972..5704298, 5704344..5704636,5704689..5704777,5704852..5705009, 5705125..5705191,5705243..5705484,5705536..5705575) /gene="1G275" /locus_tag="1G275" /codon_start=1 /product="peptidylglycine alpha-amidating monooxygenase precursor (1G275)" /protein_id="17509083" /db_xref="GI:17509083" /db_xref="AceView/WormGenes:1G275" /db_xref="LocusID:266833" // > 929_NC_003279 protein_id:17505855; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G473"; intron(phase:0,position:87); exon(number:2,size:86,35,sum:121); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5905024..5905281,5905368..5905475) /gene="1G473" /locus_tag="1G473" /codon_start=1 /product="putative nuclear protein, with a coiled coil-4 domain (1G473)" /protein_id="17505855" /db_xref="GI:17505855" /db_xref="AceView/WormGenes:1G473" /db_xref="LocusID:183218" // > 932_NC_003279 protein_id:25144188; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G493"; intron(phase:10120011200020,position:12,63,167,194,268,443,568,632,903,938,995,1034,1262,1684); exon(number:15,size:11,51,104,27,74,175,125,64,271,35,57,39,228,422,85,sum:1768); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5914847..5914880,5915029..5915180,5915229..5915541, 5915867..5915948,5915994..5916213,5916508..5917032, 5917405..5917780,5918213..5918404,5918450..5919263, 5920397..5920499,5920648..5920818,5921189..5921305, 5923472..5924157,5924208..5925471,5925660..5925917) /gene="1G493" /locus_tag="1G493" /codon_start=1 /evidence=experimental /product="putative protein of eukaryotic origin (1G493)" /protein_id="25144188" /db_xref="GI:25144188" /db_xref="AceView/WormGenes:1G493" /db_xref="LocusID:172265" // > 935_NC_003279 protein_id:17505246; Caenorhabditis elegans chromosome I, complete sequence. /gene="air-2"; intron(phase:2020,position:23,60,182,274); exon(number:5,size:22,37,122,92,32,sum:305); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(5945619..5945686,5945736..5945844,5945921..5946288, 5946352..5946625,5946726..5946824) /gene="air-2" /locus_tag="1G515" /codon_start=1 /evidence=experimental /product="Aurora/Ipl1 Related kinase, CYtoKinesis defect CYK-6, LEThal LET-603, STerile and Uncoordinated STU-7 (34.7 kD) (air-2)" /protein_id="17505246" /db_xref="GI:17505246" /db_xref="AceView/WormGenes:air-2" /db_xref="LocusID:172268" // > 972_NC_003279 protein_id:17509275; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G675"; intron(phase:2,position:73); exon(number:2,size:72,131,sum:203); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6107143..6107360,6107414..6107807) /gene="1G675" /locus_tag="1G675" /codon_start=1 /evidence=experimental /product="putative mitochondrial protein (22.9 kD) (1G675)" /protein_id="17509275" /db_xref="GI:17509275" /db_xref="AceView/WormGenes:1G675" /db_xref="LocusID:172293" // > 978_NC_003279 protein_id:25143212; Caenorhabditis elegans chromosome I, complete sequence. /gene="opt-3"; intron(phase:220020122001,position:12,51,84,142,241,369,409,457,495,545,568,661); exon(number:13,size:11,39,33,58,99,128,40,48,38,50,23,93,41,sum:701); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6141420..6141454,6141503..6141619,6141669..6141765, 6142206..6142379,6142427..6142725,6143276..6143657, 6143703..6143823,6144067..6144211,6144259..6144372, 6144421..6144568,6144615..6144683,6145367..6145646, 6145693..6145817) /gene="opt-3" /locus_tag="1G713" /codon_start=1 /evidence=experimental /exception="unclassified translation discrepancy" /product="OligopePTide/Peptide transporter, proton H+/oligopeptide symporter (77.9 kD) (opt-3)" /protein_id="25143212" /db_xref="GI:25143212" /db_xref="AceView/WormGenes:opt-3" /db_xref="LocusID:172298" // > 1005_NC_003279 protein_id:17508959; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G798"; intron(phase:2000210,position:23,87,117,186,288,326,391); exon(number:8,size:22,64,30,69,102,38,65,26,sum:416); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6229349..6229429,6229474..6229667, 6229715..6229827,6229875..6230182,6230238..6230444, 6230495..6230584,6230634..6230823,6230870..6230937)) /gene="1G798" /locus_tag="1G798" /codon_start=1 /evidence=experimental /product="putative protein family member (1G798)" /protein_id="17508959" /db_xref="GI:17508959" /db_xref="AceView/WormGenes:1G798" /db_xref="LocusID:172314" // > 1009_NC_003279 protein_id:17508941; Caenorhabditis elegans chromosome I, complete sequence. /gene="col-56"; intron(phase:0210,position:48,70,233,259); exon(number:5,size:47,22,163,26,63,sum:321); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6240841..6240981,6241030..6241097,6241495..6241982, 6242030..6242106,6242153..6242344) /gene="col-56" /locus_tag="1G809" /codon_start=1 /product="COLlagen structural gene (col-56)" /protein_id="17508941" /db_xref="GI:17508941" /db_xref="AceView/WormGenes:col-56" /db_xref="LocusID:188271" // > 1019_NC_003279 protein_id:25144305; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G842"; intron(phase:11012102121,position:56,150,198,240,406,456,498,535,573,664,719); exon(number:12,size:55,94,48,42,166,50,42,37,38,91,55,102,sum:820); {splice:gcag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6273806..6274113,6274158..6274321, 6274371..6274644,6274690..6274802,6274928..6275040, 6275097..6275221,6275269..6275417,6275651..6276149, 6276232..6276358,6276406..6276548,6276598..6276879, 6276932..6277097)) /gene="1G842" /locus_tag="1G842" /codon_start=1 /evidence=experimental /product="acyltransferase 3 family (1G842)" /protein_id="25144305" /db_xref="GI:25144305" /db_xref="AceView/WormGenes:1G842" /db_xref="LocusID:172323" // > 1030_NC_003279 protein_id:17505536; Caenorhabditis elegans chromosome I, complete sequence. /gene="1G883"; intron(phase:0100,position:18,61,145,176); exon(number:5,size:17,43,84,31,32,sum:207); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6315463..6315513,6315585..6315714,6315955..6316205, 6316253..6316345,6316395..6316493) /gene="1G883" /locus_tag="1G883" /codon_start=1 /product="putative protein (1G883)" /protein_id="17505536" /db_xref="GI:17505536" /db_xref="AceView/WormGenes:1G883" /db_xref="LocusID:182505" // > 1046_NC_003279 protein_id:32563609; Caenorhabditis elegans chromosome I, complete sequence. /gene="gld-2"; intron(phase:112121121010111202,position:14,77,118,142,219,263,306,334,380,418,482,549,587,689,732,929,995,1082); exon(number:19,size:13,63,41,24,77,44,43,28,46,38,64,67,38,102,43,197,66,87,32,sum:1113); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6378093..6378132,6378238..6378426,6378474..6378597, 6378649..6378719,6378821..6379052,6379263..6379393, 6379442..6379570,6379624..6379708,6385607..6385743, 6385793..6385905,6386576..6386768,6390310..6390509, 6391034..6391148,6391196..6391501,6391579..6391707, 6391807..6392398,6392500..6392695,6392741..6393003, 6393052..6393148) /gene="gld-2" /locus_tag="1G961" /codon_start=1 /evidence=experimental /product="regulatory cytoplasmic polyA polymerase family member, defective in Germ Line Development GLD-2, LEThal LET-606 (124.6 kD) (gld-2)" /protein_id="32563609" /db_xref="GI:32563609" /db_xref="AceView/WormGenes:gld-2" /db_xref="LocusID:172338" // > 1063_NC_003279 protein_id:17508099; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H39"; intron(phase:00000020,position:29,58,246,407,452,570,777,827); exon(number:9,size:28,29,188,161,45,118,207,50,51,sum:877); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6469055..6469138,6469187..6469273,6469320..6469883, 6469928..6470410,6470458..6470592,6470640..6470993, 6471133..6471755,6471804..6471951,6472005..6472160) /gene="1H39" /locus_tag="1H39" /codon_start=1 /evidence=experimental /product="putative protein, with 3 coiled coil-4 domains (101.2 kD) (1H39)" /protein_id="17508099" /db_xref="GI:17508099" /db_xref="AceView/WormGenes:1H39" /db_xref="LocusID:172350" // > 1068_NC_003279 protein_id:17508093; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H51"; intron(phase:000000,position:6,48,158,510,591,647); exon(number:7,size:5,42,110,352,81,56,36,sum:682); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6482001..6482015,6482081..6482206,6482255..6482584, 6483007..6484062,6484113..6484355,6484410..6484577, 6484625..6484735) /gene="1H51" /locus_tag="1H51" /codon_start=1 /evidence=experimental /product="putative nuclear protein (1H51)" /protein_id="17508093" /db_xref="GI:17508093" /db_xref="AceView/WormGenes:1H51" /db_xref="LocusID:172354" // > 1076_NC_003279 protein_id:32564980; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H78"; intron(phase:1,position:71); exon(number:2,size:70,57,sum:127); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6510757..6510929,6510971..6511181)) /gene="1H78" /locus_tag="1H78" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member of eukaryotic origin (1H78)" /protein_id="32564980" /db_xref="GI:32564980" /db_xref="AceView/WormGenes:1H78" /db_xref="LocusID:183845" // > 1083_NC_003279 protein_id:17509039; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H104"; intron(phase:0,position:41); exon(number:2,size:40,102,sum:142); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6537281..6537589,6537998..6538117)) /gene="1H104" /locus_tag="1H104" /codon_start=1 /product="TB2/DP1 and HVA22 related protein (1H104)" /protein_id="17509039" /db_xref="GI:17509039" /db_xref="AceView/WormGenes:1H104" /db_xref="LocusID:188384" // > 1089_NC_003279 protein_id:17509045; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H122"; intron(phase:101010,position:52,86,224,313,345,394); exon(number:7,size:51,34,138,89,32,49,71,sum:464); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6554791..6555006,6555057..6555202, 6555251..6555347,6555421..6555686,6555745..6556159, 6556390..6556490,6556541..6556694)) /gene="1H122" /locus_tag="1H122" /codon_start=1 /evidence=experimental /product="acyl-Coenzyme A dehydrogenase short branched chain family member (1H122)" /protein_id="17509045" /db_xref="GI:17509045" /db_xref="AceView/WormGenes:1H122" /db_xref="LocusID:172367" // > 1103_NC_003279 protein_id:17507441; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H167"; intron(phase:21000,position:32,104,133,185,207); exon(number:6,size:31,72,29,52,22,24,sum:230); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6600395..6600489,6600532..6600746,6600872..6600957, 6601003..6601158,6601462..6601527,6601820..6601894) /gene="1H167" /locus_tag="1H167" /codon_start=1 /product="putative nuclear protein (1H167)" /protein_id="17507441" /db_xref="GI:17507441" /db_xref="AceView/WormGenes:1H167" /db_xref="LocusID:185958" // > 1118_NC_003279 protein_id:17511025; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H242"; intron(phase:0200100012,position:53,84,144,190,243,323,407,448,530,733); exon(number:11,size:52,31,60,46,53,80,84,41,82,203,57,sum:789); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6673288..6673459,6673978..6674587, 6674792..6675038,6675091..6675213,6675421..6675672, 6676007..6676245,6676492..6676651,6676788..6676925, 6676975..6677152,6677902..6677996,6678040..6678195)) /gene="1H242" /locus_tag="1H242" /codon_start=1 /evidence=experimental /product="protein kinase (1H242)" /protein_id="17511025" /db_xref="GI:17511025" /db_xref="AceView/WormGenes:1H242" /db_xref="LocusID:172385" // > 1132_NC_003279 protein_id:17509473; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H317"; intron(phase:0,position:32); exon(number:2,size:31,110,sum:141); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6749351..6749443,6749495..6749827) /gene="1H317" /locus_tag="1H317" /codon_start=1 /evidence=experimental /product="cytochrome b5 (15.6 kD) (1H317)" /protein_id="17509473" /db_xref="GI:17509473" /db_xref="AceView/WormGenes:1H317" /db_xref="LocusID:172393" // > 1139_NC_003279 protein_id:17506545; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H339"; intron(phase:20,position:74,117); exon(number:3,size:73,43,32,sum:148); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6768381..6768601,6768728..6768854,6769317..6769415) /gene="1H339" /locus_tag="1H339" /codon_start=1 /product="predicted CDS, putative protein (1H339)" /protein_id="17506545" /db_xref="GI:17506545" /db_xref="AceView/WormGenes:1H339" /db_xref="LocusID:184173" // > 1142_NC_003279 protein_id:17506305; Caenorhabditis elegans chromosome I, complete sequence. /gene="cye-1"; intron(phase:2011000,position:26,75,101,192,322,380,504); exon(number:8,size:25,49,26,91,130,58,124,21,sum:524); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6788884..6788960,6789050..6789194,6790054..6790132, 6790176..6790448,6790583..6790971,6791231..6791404, 6791446..6791817,6791878..6791943) /gene="cye-1" /locus_tag="1H359" /codon_start=1 /evidence=experimental /product="cyclin E, abnormal Eversion of VuLva EVL-10 (60.6 kD) (cye-1)" /protein_id="17506305" /db_xref="GI:17506305" /db_xref="AceView/WormGenes:cye-1" /db_xref="LocusID:172399" // > 1149_NC_003279 protein_id:25144423; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H380"; intron(phase:01110,position:28,49,87,124,159); exon(number:6,size:27,21,38,37,35,44,sum:202); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6813130..6813264,6813472..6813575, 6813622..6813732,6815291..6815404,6815671..6815734, 6818292..6818372)) /gene="1H380" /locus_tag="1H380" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (1H380)" /protein_id="25144423" /db_xref="GI:25144423" /db_xref="AceView/WormGenes:1H380" /db_xref="LocusID:183992" // > 1150_NC_003279 protein_id:17508023; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H387"; intron(phase:0202220,position:17,72,104,139,203,238,274); exon(number:8,size:16,55,32,35,64,35,36,38,sum:311); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6820765..6820812,6820861..6821027,6821077..6821170, 6821237..6821343,6821458..6821649,6821693..6821797, 6821846..6821951,6821997..6822113) /gene="1H387" /locus_tag="1H387" /codon_start=1 /product="pmt3 processing deconjugating enzyme like (1H387)" /protein_id="17508023" /db_xref="GI:17508023" /db_xref="AceView/WormGenes:1H387" /db_xref="LocusID:186900" // > 1161_NC_003279 protein_id:17509123; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H449"; intron(phase:200,position:71,134,159); exon(number:4,size:70,63,25,127,sum:285); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6878685..6878896,6879319..6879505,6879580..6879654, 6879798..6880181) /gene="1H449" /locus_tag="1H449" /codon_start=1 /evidence=experimental /product="putative protein, with at least 2 transmembrane domains (1H449)" /protein_id="17509123" /db_xref="GI:17509123" /db_xref="AceView/WormGenes:1H449" /db_xref="LocusID:172416" // > 1167_NC_003279 protein_id:25150275; Caenorhabditis elegans chromosome I, complete sequence. /gene="smg-1"; intron(phase:00200021022222100202211020100002000202210,position:16,45,93,186,275,350,387,424,468,511,563,611,662,707,775,850,886,962,992,1028,1070,1159,1254,1303,1401,1450,1490,1550,1645,1702,1730,1779,1859,1894,1993,2110,2140,2193,2220,2253,2298); exon(number:42,size:15,29,48,93,89,75,37,37,44,43,52,48,51,45,68,75,36,76,30,36,42,89,95,49,98,49,40,60,95,57,28,49,80,35,99,117,30,53,27,33,45,25,sum:2322); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gcag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(6909612..6909689,6909769..6909902, 6909947..6910044,6910118..6910198,6910319..6910479, 6910555..6910642,6910720..6911072,6911177..6911473, 6911522..6911626,6911713..6911950,6912051..6912199, 6912245..6912328,6912571..6912741,6912786..6913070, 6913117..6913295,6913844..6913964,6914018..6914162, 6914208..6914503,6914607..6914752,6914799..6915083, 6915179..6915444,6915651..6915776,6915849..6915958, 6916006..6916093,6916144..6916373,6916455..6916562, 6916604..6916827,6916902..6917104,6917150..6917284, 6917980..6918132,6918621..6918764,6918823..6918978, 6919023..6919153,6919223..6919353,6919401..6919510, 6919590..6919702,6920093..6920317,6920603..6920869, 6920913..6921189,6921236..6921381,6921436..6921522, 6921570..6921614)) /gene="smg-1" /locus_tag="1H478" /codon_start=1 /evidence=experimental /product="suppressor with Morphological effect on Genitalia SMG-1, Male ABnormal MAB-1, nonsense-mediated mRNA decay protein SMG-1 (265.4 kD) (smg-1)" /protein_id="25150275" /db_xref="GI:25150275" /db_xref="AceView/WormGenes:smg-1" /db_xref="LocusID:172418" // > 1168_NC_003279 protein_id:17506103; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H491"; intron(phase:000,position:67,144,179); exon(number:4,size:66,77,35,28,sum:206); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(6923122..6923319,6923405..6923635,6923740..6923844, 6923937..6924023) /gene="1H491" /locus_tag="1H491" /codon_start=1 /evidence=experimental /product="putative protein of bilaterial origin (23.3 kD) (1H491)" /protein_id="17506103" /db_xref="GI:17506103" /db_xref="AceView/WormGenes:1H491" /db_xref="LocusID:172419" // > 1206_NC_003279 protein_id:17506749; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H675"; intron(phase:21,position:16,50); exon(number:3,size:15,34,123,sum:172); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(7106712..7106758,7106803..7106903,7106951..7107321) /gene="1H675" /locus_tag="1H675" /codon_start=1 /product="putative protein (1H675)" /protein_id="17506749" /db_xref="GI:17506749" /db_xref="AceView/WormGenes:1H675" /db_xref="LocusID:184830" // > 1229_NC_003279 protein_id:17505430; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H782"; intron(phase:00210100010,position:31,65,170,246,304,367,405,446,481,620,647); exon(number:12,size:30,34,105,76,58,63,38,41,35,139,27,36,sum:682); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(7212653..7212763,7212813..7212892, 7212952..7213369,7213448..7213552,7213600..7213722, 7213773..7213885,7214110..7214299,7214376..7214548, 7214575..7214801,7215022..7215338,7215408..7215509, 7215560..7215649)) /gene="1H782" /locus_tag="1H782" /codon_start=1 /evidence=experimental /product="ankyrin (76.4 kD) (1H782)" /protein_id="17505430" /db_xref="GI:17505430" /db_xref="AceView/WormGenes:1H782" /db_xref="LocusID:172459" // > 1267_NC_003279 protein_id:17507493; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H922"; intron(phase:10,position:21,48); exon(number:3,size:20,27,99,sum:146); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(7354134..7354433,7354480..7354559, 7354722..7354782)) /gene="1H922" /locus_tag="1H922" /codon_start=1 /evidence=experimental /product="glycine cleavage system H protein (16.0 kD) (1H922)" /protein_id="17507493" /db_xref="GI:17507493" /db_xref="AceView/WormGenes:1H922" /db_xref="LocusID:172486" // > 1272_NC_003279 protein_id:17506525; Caenorhabditis elegans chromosome I, complete sequence. /gene="1H934"; intron(phase:0010,position:35,66,104,173); exon(number:5,size:34,31,38,69,87,sum:259); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(7365918..7366181,7366310..7366515, 7366575..7366689,7366884..7366976,7367026..7367127)) /gene="1H934" /locus_tag="1H934" /codon_start=1 /evidence=experimental /product="putative protein (1H934)" /protein_id="17506525" /db_xref="GI:17506525" /db_xref="AceView/WormGenes:1H934" /db_xref="LocusID:172490" // > 1283_NC_003279 protein_id:17511093; Caenorhabditis elegans chromosome I, complete sequence. /gene="spe-4"; intron(phase:0010111,position:70,155,200,225,300,386,435); exon(number:8,size:69,85,45,25,75,86,49,31,sum:465); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(7462773..7462979,7463362..7463616,7463660..7463795, 7463843..7463916,7463964..7464189,7464261..7464518, 7464583..7464729,7464779..7464873) /gene="spe-4" /locus_tag="1I31" /codon_start=1 /evidence=experimental /product="defective SPErmatogenesis SPE-4, integral membrane protein (51.8 kD) (spe-4)" /protein_id="17511093" /db_xref="GI:17511093" /db_xref="AceView/WormGenes:spe-4" /db_xref="LocusID:172498" // > 1308_NC_003279 protein_id:25144551; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I165"; intron(phase:00001220,position:32,54,111,200,303,351,392,424); exon(number:9,size:31,22,57,89,103,48,41,32,5,sum:428); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(7596780..7596872,7596925..7596990,7597041..7597211, 7597257..7597523,7597567..7597876,7597972..7598116, 7598161..7598283,7598329..7598422,7598494..7598511) /gene="1I165" /locus_tag="1I165" /codon_start=1 /evidence=experimental /product="putative protein (48.5 kD) (1I165)" /protein_id="25144551" /db_xref="GI:25144551" /db_xref="AceView/WormGenes:1I165" /db_xref="LocusID:172516" // > 1356_NC_003279 protein_id:17508605; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I447"; intron(phase:0020,position:13,48,436,539); exon(number:5,size:12,35,388,103,116,sum:654); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(7874458..7874493,7874541..7874645,7878024..7879189, 7879235..7879541,7879590..7879940) /gene="1I447" /locus_tag="1I447" /codon_start=1 /evidence=experimental /product="phosphoenolpyruvate carboxykinase cytosolic family member (73.4 kD) (1I447)" /protein_id="17508605" /db_xref="GI:17508605" /db_xref="AceView/WormGenes:1I447" /db_xref="LocusID:172556" // > 1374_NC_003279 protein_id:32565067; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I535"; intron(phase:010,position:36,65,186); exon(number:4,size:35,29,121,10,sum:195); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(7966766..7966870,7966915..7967002,7967339..7967700, 7967931..7967963) /gene="1I535" /locus_tag="1I535" /codon_start=1 /evidence=experimental /product="putative protein (22.3 kD) (1I535)" /protein_id="32565067" /db_xref="GI:32565067" /db_xref="AceView/WormGenes:1I535" /db_xref="LocusID:172572" // > 1378_NC_003279 protein_id:17507913; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I567"; intron(phase:0000101212220220220,position:50,131,191,238,290,464,507,524,545,636,663,708,755,1375,1480,1623,1764,1895,2098); exon(number:20,size:49,81,60,47,52,174,43,17,21,91,27,45,47,620,105,143,141,131,203,63,sum:2160); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(7989651..7989797,7990018..7990260,7990465..7990644, 7990694..7990834,7990880..7991036,7991452..7991972, 7992270..7992399,7993042..7993093,7993144..7993205, 7993370..7993643,7993698..7993778,7994449..7994583, 7995115..7995253,7995296..7997157,7997344..7997658, 7997927..7998353,7998773..7999197,7999245..7999637, 7999885..8000491,8000581..8000772) /gene="1I567" /locus_tag="1I567" /codon_start=1 /evidence=experimental /product="putative protein, with 3 coiled coil-4 domains (1I567)" /protein_id="17507913" /db_xref="GI:17507913" /db_xref="AceView/WormGenes:1I567" /db_xref="LocusID:172577" // > 1400_NC_003279 protein_id:17506701; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I673"; intron(phase:020001,position:172,222,317,369,410,493); exon(number:7,size:171,50,95,52,41,83,53,sum:545); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8103797..8104309,8104693..8104844,8104890..8105172, 8105257..8105412,8105716..8105838,8105963..8106212, 8106263..8106423) /gene="1I673" /locus_tag="1I673" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with 2 coiled coil-4 domains (61.7 kD) (1I673)" /protein_id="17506701" /db_xref="GI:17506701" /db_xref="AceView/WormGenes:1I673" /db_xref="LocusID:172595" // > 1421_NC_003279 protein_id:17511059; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I831"; intron(phase:200,position:37,74,106); exon(number:4,size:36,37,32,84,sum:189); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8263409..8263518,8263565..8263673,8263790..8263885, 8264008..8264262) /gene="1I831" /locus_tag="1I831" /codon_start=1 /evidence=experimental /product="DNA segment Chr 13 Wayne State University 177 expressed like (22.2 kD) (1I831)" /protein_id="17511059" /db_xref="GI:17511059" /db_xref="AceView/WormGenes:1I831" /db_xref="LocusID:191277" // > 1427_NC_003279 protein_id:17508241; Caenorhabditis elegans chromosome I, complete sequence. /gene="npp-2"; intron(phase:10020,position:32,211,321,365,576); exon(number:6,size:31,179,110,44,211,23,sum:598); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(8299461..8299532,8299582..8300212, 8300280..8300413,8300638..8300967,8301020..8301555, 8301602..8301695)) /gene="npp-2" /locus_tag="1I868" /codon_start=1 /evidence=experimental /product="kinase UPstream gene (in operon), Nuclear Pore complex Protein NPP-2 (68.0 kD) (npp-2)" /protein_id="17508241" /db_xref="GI:17508241" /db_xref="AceView/WormGenes:npp-2" /db_xref="LocusID:172611" // > 1450_NC_003279 protein_id:17506513; Caenorhabditis elegans chromosome I, complete sequence. /gene="1I991"; intron(phase:0110202,position:26,56,90,141,257,307,347); exon(number:8,size:25,30,34,51,116,50,40,73,sum:419); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8421348..8421422,8422027..8422117,8422580..8422681, 8422725..8422876,8422937..8423286,8423563..8423710, 8423757..8423878,8423923..8424142) /gene="1I991" /locus_tag="1I991" /codon_start=1 /evidence=experimental /product="acid phosphatase 5 (47.7 kD) (1I991)" /protein_id="17506513" /db_xref="GI:17506513" /db_xref="AceView/WormGenes:1I991" /db_xref="LocusID:172627" // > 1474_NC_003279 protein_id:17508011; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J95"; intron(phase:11,position:22,122); exon(number:3,size:21,100,13,sum:134); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8526958..8527021,8527163..8527462,8527516..8527556) /gene="1J95" /locus_tag="1J95" /codon_start=1 /product="putative protein (1J95)" /protein_id="17508011" /db_xref="GI:17508011" /db_xref="AceView/WormGenes:1J95" /db_xref="LocusID:186870" // > 1504_NC_003279 protein_id:25151114; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J239"; intron(phase:2022222,position:60,117,229,273,385,458,543); exon(number:8,size:59,57,112,44,112,73,85,66,sum:608); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8668893..8669071,8669119..8669287,8669338..8669675, 8669725..8669856,8669906..8670241,8670297..8670515, 8670562..8670816,8670917..8671115) /gene="1J239" /locus_tag="1J239" /codon_start=1 /evidence=experimental /product="cross-link repair DNA 1 family member (69.0 kD) (1J239)" /protein_id="25151114" /db_xref="GI:25151114" /db_xref="AceView/WormGenes:1J239" /db_xref="LocusID:172666" // > 1533_NC_003279 protein_id:17506437; Caenorhabditis elegans chromosome I, complete sequence. /gene="pqn-26"; intron(phase:1110000001,position:56,90,204,346,380,407,650,689,728,759); exon(number:11,size:55,34,114,142,34,27,243,39,39,31,38,sum:796); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(8779490..8779605,8780224..8780317, 8780364..8780480,8780528..8780644,8781030..8781758, 8782485..8782565,8782713..8782814,8783240..8783664, 8784767..8785108,8785501..8785602,8785688..8785853)) /gene="pqn-26" /locus_tag="1J348" /codon_start=1 /product="prion-like Q/N-rich domain protein PQN-26, Prion-like Q/N-rich domain protein (pqn-26)" /protein_id="17506437" /db_xref="GI:17506437" /db_xref="AceView/WormGenes:pqn-26" /db_xref="LocusID:183974" // > 1545_NC_003279 protein_id:17507191; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J399"; intron(phase:0020,position:53,82,140,182); exon(number:5,size:52,29,58,42,43,sum:224); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8830344..8830499,8830604..8830690,8830943..8831118, 8831249..8831372,8831531..8831662) /gene="1J399" /locus_tag="1J399" /codon_start=1 /product="putative protein, with a coiled coil-4 domain (1J399)" /protein_id="17507191" /db_xref="GI:17507191" /db_xref="AceView/WormGenes:1J399" /db_xref="LocusID:185337" // > 1555_NC_003279 protein_id:17507659; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J467"; intron(phase:112001010111211102111012012100000100011200211100020,position:87,98,126,202,344,406,577,656,826,869,909,969,996,1077,1097,1157,1247,1386,1415,1454,1499,1526,1588,1642,1680,1717,1755,1800,1851,1887,1925,1963,1999,2044,2152,2184,2231,2267,2292,2348,2428,2471,2524,2570,2627,2669,2703,2729,2788,2822,2969); exon(number:52,size:86,11,28,76,142,62,171,79,170,43,40,60,27,81,20,60,90,139,29,39,45,27,62,54,38,37,38,45,51,36,38,38,36,45,108,32,47,36,25,56,80,43,53,46,57,42,34,26,59,34,147,4,sum:2972); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8884140..8884398,8884882..8884914,8885104..8885188, 8885278..8885503,8886144..8886569,8887600..8887786, 8887831..8888342,8888450..8888687,8889038..8889546, 8889631..8889760,8889837..8889956,8890105..8890284, 8890827..8890908,8890993..8891234,8891302..8891361, 8891420..8891599,8891889..8892157,8892246..8892664, 8892719..8892804,8892850..8892966,8893046..8893180, 8893248..8893327,8893386..8893572,8893862..8894024, 8894150..8894261,8894436..8894547,8894604..8894718, 8894881..8895014,8895060..8895211,8895521..8895628, 8895678..8895791,8895835..8895948,8895995..8896102, 8896148..8896283,8896499..8896821,8896898..8896993, 8897075..8897215,8897312..8897420,8897471..8897545, 8897627..8897795,8897845..8898082,8898131..8898259, 8898574..8898734,8898784..8898920,8898969..8899139, 8899214..8899339,8899594..8899694,8899742..8899819, 8899886..8900062,8900110..8900213,8900442..8900880, 8900996..8901010) /gene="1J467" /locus_tag="1J467" /codon_start=1 /evidence=experimental /product="notch (1J467)" /protein_id="17507659" /db_xref="GI:17507659" /db_xref="AceView/WormGenes:1J467" /db_xref="LocusID:172702" // > 1558_NC_003279 protein_id:17508967; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J480"; intron(phase:2100210,position:47,86,178,236,282,415,522); exon(number:8,size:46,39,92,58,46,133,107,45,sum:566); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(8910903..8911040,8911117..8911436, 8911569..8911966,8912009..8912148,8912369..8912542, 8912590..8912864,8912919..8913034,8913363..8913502)) /gene="1J480" /locus_tag="1J480" /codon_start=1 /evidence=experimental /product="PRIP-interacting protein (65.4 kD) (1J480)" /protein_id="17508967" /db_xref="GI:17508967" /db_xref="AceView/WormGenes:1J480" /db_xref="LocusID:172704" // > 1570_NC_003279 protein_id:17507087; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J543"; intron(phase:11,position:29,84); exon(number:3,size:28,55,80,sum:163); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(8974369..8974453,8974561..8974725,8974776..8975017) /gene="1J543" /locus_tag="1J543" /codon_start=1 /evidence=experimental /product="i-125 protein (1J543)" /protein_id="17507087" /db_xref="GI:17507087" /db_xref="AceView/WormGenes:1J543" /db_xref="LocusID:185213" // > 1643_NC_003279 protein_id:17505617; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J982"; intron(phase:2200001210,position:50,84,124,202,282,401,425,442,504,669); exon(number:11,size:49,34,40,78,80,119,24,17,62,165,48,sum:716); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9415228..9415374,9415422..9415915, 9415990..9416174,9416218..9416269,9416415..9416487, 9416541..9416897,9416974..9417213,9417256..9417489, 9417641..9417758,9417854..9417955,9418000..9418148)) /gene="1J982" /locus_tag="1J982" /codon_start=1 /product="putative protein family member (1J982)" /protein_id="17505617" /db_xref="GI:17505617" /db_xref="AceView/WormGenes:1J982" /db_xref="LocusID:182724" // > 1644_NC_003279 protein_id:17505619; Caenorhabditis elegans chromosome I, complete sequence. /gene="1J991"; intron(phase:002000,position:152,347,376,447,670,708); exon(number:7,size:151,195,29,71,223,38,112,sum:819); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(9418668..9419120,9420368..9420952,9421000..9421088, 9422615..9422825,9423334..9424002,9424054..9424167, 9424221..9424559) /gene="1J991" /locus_tag="1J991" /codon_start=1 /evidence=experimental /product="protein kinase beta like (1J991)" /protein_id="17505619" /db_xref="GI:17505619" /db_xref="AceView/WormGenes:1J991" /db_xref="LocusID:172766" // > 1662_NC_003279 protein_id:32564658; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K70"; intron(phase:01200,position:10,51,236,292,319); exon(number:6,size:9,41,185,56,27,14,sum:332); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9500996..9501040,9501088..9501168, 9501210..9501375,9501502..9502057,9502297..9502420, 9502527..9502553)) /gene="1K70" /locus_tag="1K70" /codon_start=1 /evidence=experimental /product="inositol polyphosphate kinase (37.2 kD) (1K70)" /protein_id="32564658" /db_xref="GI:32564658" /db_xref="AceView/WormGenes:1K70" /db_xref="LocusID:172779" // > 1673_NC_003279 protein_id:17505915; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K114"; intron(phase:000,position:8,162,282); exon(number:4,size:7,154,120,75,sum:356); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9546241..9546468,9546969..9547328, 9547924..9548385,9548918..9548938)) /gene="1K114" /locus_tag="1K114" /codon_start=1 /evidence=experimental /product="homeobox protein (1K114)" /protein_id="17505915" /db_xref="GI:17505915" /db_xref="AceView/WormGenes:1K114" /db_xref="LocusID:172789" // > 1685_NC_003279 protein_id:17508117; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K168"; intron(phase:0100,position:7,33,63,87); exon(number:5,size:6,26,30,24,14,sum:100); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9600124..9600168,9600247..9600318, 9600363..9600451,9600981..9601059,9601108..9601125)) /gene="1K168" /locus_tag="1K168" /codon_start=1 /evidence=experimental /product="trypsin inhibitor-like, cysteine-rich TIL region (11.7 kD) (1K168)" /protein_id="17508117" /db_xref="GI:17508117" /db_xref="AceView/WormGenes:1K168" /db_xref="LocusID:172797" // > 1691_NC_003279 protein_id:17508127; Caenorhabditis elegans chromosome I, complete sequence. /gene="lin-53"; intron(phase:02,position:53,247); exon(number:3,size:52,194,171,sum:417); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9626455..9626968,9627016..9627599, 9627654..9627809)) /gene="lin-53" /locus_tag="1K196" /codon_start=1 /evidence=experimental /product="RetinoBlastoma Associated protein p48 related, synthetic multivulva protein, retinoblastoma LIN-35 binding protein, chromatin assembly / nucleosome remodeling factor, abnormal cell LINeage LIN-53 (47.2 kD) (lin-53)" /protein_id="17508127" /db_xref="GI:17508127" /db_xref="AceView/WormGenes:lin-53" /db_xref="LocusID:172802" // > 1696_NC_003279 protein_id:17508883; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K210"; intron(phase:0000220,position:28,54,91,126,230,309,347); exon(number:8,size:27,26,37,35,104,79,38,20,sum:366); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9641288..9641350,9641393..9641504, 9641552..9641788,9641848..9642161,9642214..9642318, 9642494..9642604,9642679..9642756,9642817..9642897)) /gene="1K210" /locus_tag="1K210" /codon_start=1 /evidence=experimental /product="putative protein family member (1K210)" /protein_id="17508883" /db_xref="GI:17508883" /db_xref="AceView/WormGenes:1K210" /db_xref="LocusID:172808" // > 1707_NC_003279 protein_id:17505448; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K244"; intron(phase:2002,position:21,59,126,229); exon(number:5,size:20,38,67,103,34,sum:262); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9676763..9676865,9676914..9677224, 9678298..9678498,9678547..9678658,9678704..9678765)) /gene="1K244" /locus_tag="1K244" /codon_start=1 /product="putative protein (1K244)" /protein_id="17505448" /db_xref="GI:17505448" /db_xref="AceView/WormGenes:1K244" /db_xref="LocusID:182158" // > 1710_NC_003279 protein_id:17505470; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K257"; intron(phase:01202,position:64,159,199,407,505); exon(number:6,size:63,95,40,208,98,38,sum:542); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(9688649..9688837,9688885..9689170,9689214..9689334, 9689441..9690062,9690106..9690401,9690848..9690962) /gene="1K257" /locus_tag="1K257" /codon_start=1 /product="variant Tc4 transposable element expressed in mut-2, not in wild type N2 (1K257)" /protein_id="17505470" /db_xref="GI:17505470" /db_xref="AceView/WormGenes:1K257" /db_xref="LocusID:182225" // > 1711_NC_003279 protein_id:17505472; Caenorhabditis elegans chromosome I, complete sequence. /gene="ikb-1"; intron(phase:01021001,position:25,66,94,176,204,249,339,454); exon(number:9,size:24,41,28,82,28,45,90,115,144,sum:597); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(9693604..9693675,9694222..9694345,9694395..9694477, 9694621..9694868,9694919..9695001,9695311..9695444, 9695501..9695770,9695818..9696163,9696209..9696642) /gene="ikb-1" /locus_tag="1K263" /codon_start=1 /evidence=experimental /product="I Kappa B homolog, death domain and ankyrin repeats containing protein, increases lifespan (66.4 kD) (ikb-1)" /protein_id="17505472" /db_xref="GI:17505472" /db_xref="AceView/WormGenes:ikb-1" /db_xref="LocusID:172817" // > 1741_NC_003279 protein_id:17508461; Caenorhabditis elegans chromosome I, complete sequence. /gene="nhr-62"; intron(phase:12110,position:83,125,145,409,478); exon(number:6,size:82,42,20,264,69,38,sum:515); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(9847659..9847905,9849047..9849173,9850740..9850798, 9851493..9852284,9852339..9852544,9852641..9852757) /gene="nhr-62" /locus_tag="1K419" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (58.1 kD) (nhr-62)" /protein_id="17508461" /db_xref="GI:17508461" /db_xref="AceView/WormGenes:nhr-62" /db_xref="LocusID:172836" // > 1743_NC_003279 protein_id:17508185; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K426"; intron(phase:000,position:57,133,163); exon(number:4,size:56,76,30,12,sum:174); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9858689..9858727,9859094..9859183, 9859235..9859462,9859604..9859771)) /gene="1K426" /locus_tag="1K426" /codon_start=1 /evidence=experimental /product="cAMP-regulated phosphoprotein/endosulfine conserved region (1K426)" /protein_id="17508185" /db_xref="GI:17508185" /db_xref="AceView/WormGenes:1K426" /db_xref="LocusID:172837" // > 1760_NC_003279 protein_id:17510827; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K514"; intron(phase:002100,position:67,121,161,204,260,378); exon(number:7,size:66,54,40,43,56,118,53,sum:430); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(9944307..9944468,9944517..9944870, 9944917..9945083,9945133..9945260,9945311..9945432, 9945785..9945946,9946006..9946203)) /gene="1K514" /locus_tag="1K514" /codon_start=1 /evidence=experimental /product="protein kinase (49.1 kD) (1K514)" /protein_id="17510827" /db_xref="GI:17510827" /db_xref="AceView/WormGenes:1K514" /db_xref="LocusID:172850" // > 1774_NC_003279 protein_id:17505446; Caenorhabditis elegans chromosome I, complete sequence. /gene="fog-3"; intron(phase:0112102,position:25,52,86,120,162,192,221); exon(number:8,size:24,27,34,34,42,30,29,43,sum:263); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(10024828..10024899,10024950..10025031, 10025090..10025191,10025241..10025343,10025396..10025520, 10025578..10025666,10025716..10025804,10025849..10025978) /gene="fog-3" /locus_tag="1K593" /codon_start=1 /evidence=experimental /product="feminization Of Germline FOG-3, Tob and anti-proliferation factor related, required for the specification of male germ cell fate (29.5 kD) (fog-3)" /protein_id="17505446" /db_xref="GI:17505446" /db_xref="AceView/WormGenes:fog-3" /db_xref="LocusID:172863" // > 1795_NC_003279 protein_id:17510849; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K705"; intron(phase:0022000,position:69,161,270,624,707,889,925); exon(number:8,size:68,92,109,354,83,182,36,24,sum:948); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(10130569..10130772,10133434..10133709, 10133763..10134091,10134537..10135598,10135926..10136172, 10136557..10137102,10137154..10137261,10137846..10137920) /gene="1K705" /locus_tag="1K705" /codon_start=1 /evidence=experimental /product="rbmc macmu rna-binding protein 12 like (104.3 kD) (1K705)" /protein_id="17510849" /db_xref="GI:17510849" /db_xref="AceView/WormGenes:1K705" /db_xref="LocusID:172878" // > 1805_NC_003279 protein_id:17505711; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K763"; intron(phase:10102200,position:34,91,128,158,233,267,307,335); exon(number:9,size:33,57,37,30,75,34,40,28,70,sum:404); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(10193928..10194027,10194077..10194246, 10194294..10194405,10194453..10194541,10194593..10194819, 10194867..10194968,10195012..10195129,10195184..10195267, 10195310..10195522) /gene="1K763" /locus_tag="1K763" /codon_start=1 /evidence=experimental /product="phosphatase gene g4-1 like (46.8 kD) (1K763)" /protein_id="17505711" /db_xref="GI:17505711" /db_xref="AceView/WormGenes:1K763" /db_xref="LocusID:172886" // > 1806_NC_003279 protein_id:17505713; Caenorhabditis elegans chromosome I, complete sequence. /gene="dao-5"; intron(phase:0000,position:39,93,202,920); exon(number:5,size:38,54,109,718,52,sum:971); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(10195822..10195980,10196029..10198182, 10198232..10198558,10198607..10198768,10198817..10198930)) /gene="dao-5" /locus_tag="1K764" /codon_start=1 /evidence=experimental /product="dauer or Aging adult Overexpression DAO-5, SRP40, C-terminal (101.1 kD) (dao-5)" /protein_id="17505713" /db_xref="GI:17505713" /db_xref="AceView/WormGenes:dao-5" /db_xref="LocusID:266845" // > 1842_NC_003279 protein_id:17506789; Caenorhabditis elegans chromosome I, complete sequence. /gene="1K996"; intron(phase:0000001,position:59,133,440,499,627,783,872); exon(number:8,size:58,74,307,59,128,156,89,61,sum:932); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(10426538..10426722,10426769..10427036, 10427336..10427803,10427920..10428303,10428458..10428634, 10428721..10429641,10429687..10429908,10430354..10430527)) /gene="1K996" /locus_tag="1K996" /codon_start=1 /evidence=experimental /product="putative protein family member, with a coiled coil-4 domain (1K996)" /protein_id="17506789" /db_xref="GI:17506789" /db_xref="AceView/WormGenes:1K996" /db_xref="LocusID:172918" // > 1849_NC_003279 protein_id:17510885; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L20"; intron(phase:00020,position:42,129,190,270,356); exon(number:6,size:41,87,61,80,86,45,sum:400); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(10451901..10452038,10452094..10452349, 10452808..10453049,10453269..10453451,10453579..10453839, 10453972..10454094)) /gene="1L20" /locus_tag="1L20" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (1L20)" /protein_id="17510885" /db_xref="GI:17510885" /db_xref="AceView/WormGenes:1L20" /db_xref="LocusID:172923" // > 1876_NC_003279 protein_id:17506807; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L130"; intron(phase:20,position:18,50); exon(number:3,size:17,32,104,sum:153); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(10561243..10561557,10561616..10561709, 10561791..10561843)) /gene="1L130" /locus_tag="1L130" /codon_start=1 /evidence=experimental /product="nucleoside diphosphate kinase (1L130)" /protein_id="17506807" /db_xref="GI:17506807" /db_xref="AceView/WormGenes:1L130" /db_xref="LocusID:172939" // > 1889_NC_003279 protein_id:17509135; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L181"; intron(phase:1120000010,position:31,122,160,194,234,257,284,363,445,622); exon(number:11,size:30,91,38,34,40,23,27,79,82,177,169,sum:790); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(10606759..10606849,10606975..10607247, 10607292..10607406,10607457..10607556,10607605..10607724, 10608301..10608369,10608650..10608730,10611112..10611348, 10611404..10611650,10612963..10613492,10613888..10614397) /gene="1L181" /locus_tag="1L181" /codon_start=1 /evidence=experimental /product="digeorge syndrome critical region gene 8 like (1L181)" /protein_id="17509135" /db_xref="GI:17509135" /db_xref="AceView/WormGenes:1L181" /db_xref="LocusID:172950" // > 1899_NC_003279 protein_id:17505378; Caenorhabditis elegans chromosome I, complete sequence. /gene="eif-3.E"; intron(phase:000,position:31,123,282); exon(number:4,size:30,92,159,151,sum:432); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(10648857..10649312,10649368..10649844, 10649891..10650166,10650235..10650324)) /gene="eif-3.E" /locus_tag="1L218" /codon_start=1 /evidence=experimental /product="eukaryotic Initiation Factor (50.7 kD) (eif-3.E)" /protein_id="17505378" /db_xref="GI:17505378" /db_xref="AceView/WormGenes:eif-3.E" /db_xref="LocusID:172959" // > 1908_NC_003279 protein_id:17505825; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L251"; intron(phase:002000000,position:41,80,111,135,167,195,268,303,332); exon(number:10,size:40,39,31,24,32,28,73,35,29,26,sum:357); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(10680862..10680981,10681023..10681139, 10681352..10681446,10681496..10681565,10681757..10681852, 10681897..10681980,10682034..10682252,10682505..10682609, 10682659..10682745,10682793..10682873) /gene="1L251" /locus_tag="1L251" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member of eukaryotic origin (1L251)" /protein_id="17505825" /db_xref="GI:17505825" /db_xref="AceView/WormGenes:1L251" /db_xref="LocusID:172964" // > 1912_NC_003279 protein_id:17505833; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L260"; intron(phase:211120,position:20,80,131,356,445,509); exon(number:7,size:19,60,51,225,89,64,132,sum:640); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(10691427..10691825,10691877..10692066, 10692110..10692377,10692422..10693096,10693142..10693294, 10693342..10693520,10693574..10693632)) /gene="1L260" /locus_tag="1L260" /codon_start=1 /evidence=experimental /product="succinate dehydrogenase Fp (70.4 kD) (1L260)" /protein_id="17505833" /db_xref="GI:17505833" /db_xref="AceView/WormGenes:1L260" /db_xref="LocusID:172968" // > 1933_NC_003279 protein_id:17507601; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L369"; intron(phase:00020,position:25,56,208,688,831); exon(number:6,size:24,31,152,480,143,200,sum:1030); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(10797186..10797257,10797306..10797398, 10797449..10797904,10798266..10799707,10799868..10800294, 10800348..10800950) /gene="1L369" /locus_tag="1L369" /codon_start=1 /evidence=experimental /product="of Ty 16 (116.9 kD) (1L369)" /protein_id="17507601" /db_xref="GI:17507601" /db_xref="AceView/WormGenes:1L369" /db_xref="LocusID:172984" // > 1994_NC_003279 protein_id:17507363; Caenorhabditis elegans chromosome I, complete sequence. /gene="1L832"; intron(phase:0,position:132); exon(number:2,size:131,90,sum:221); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(11249277..11249549,11249630..11250022)) /gene="1L832" /locus_tag="1L832" /codon_start=1 /product="predicted CDS, galectin like family member (1L832)" /protein_id="17507363" /db_xref="GI:17507363" /db_xref="AceView/WormGenes:1L832" /db_xref="LocusID:185820" // > 2036_NC_003279 protein_id:17511157; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M52"; intron(phase:01,position:101,212); exon(number:3,size:100,111,127,sum:338); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(11469114..11469496,11470411..11470744, 11470803..11471102)) /gene="1M52" /locus_tag="1M52" /codon_start=1 /evidence=experimental /product="putative protein family member (39.8 kD) (1M52)" /protein_id="17511157" /db_xref="GI:17511157" /db_xref="AceView/WormGenes:1M52" /db_xref="LocusID:191492" // > 2117_NC_003279 protein_id:17508585; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M500"; intron(phase:12,position:9,35); exon(number:3,size:8,26,49,sum:83); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(11917500..11917647,11917703..11917781, 11918000..11918024)) /gene="1M500" /locus_tag="1M500" /codon_start=1 /evidence=experimental /product="small nucleic-acid-binding protein, enriched in embryos and the germline; closely related to 3' pre-RNA cleavage stimulation factor, 64 kDa polyadenylation factor (1M500)" /protein_id="17508585" /db_xref="GI:17508585" /db_xref="AceView/WormGenes:1M500" /db_xref="LocusID:173070" // > 2136_NC_003279 protein_id:17510237; Caenorhabditis elegans chromosome I, complete sequence. /gene="abt-5"; intron(phase:0220101100201000020,position:44,92,148,227,354,713,817,875,917,985,1069,1134,1179,1225,1254,1318,1340,1375,1512); exon(number:20,size:43,48,56,79,127,359,104,58,42,68,84,65,45,46,29,64,22,35,137,53,sum:1564); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12019326..12019454,12019510..12019655, 12019990..12020157,12020210..12020444,12020873..12021254, 12021310..12022385,12022876..12023188,12023237..12023410, 12023577..12023701,12023803..12024006,12024265..12024518, 12024563..12024755,12024800..12024935,12024987..12025123, 12025168..12025254,12025567..12025758,12025805..12025870, 12025919..12026025,12026074..12026482,12026528..12026689) /gene="abt-5" /locus_tag="1M609" /codon_start=1 /evidence=experimental /product="ATP-binding cassette transporter (abt-5)" /protein_id="17510237" /db_xref="GI:17510237" /db_xref="AceView/WormGenes:abt-5" /db_xref="LocusID:173081" // > 2146_NC_003279 protein_id:17510079; Caenorhabditis elegans chromosome I, complete sequence. /gene="clp-3"; intron(phase:12002,position:159,288,381,462,617); exon(number:6,size:158,129,93,81,155,22,sum:638); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(12081225..12081291,12081986..12082452, 12082753..12082995,12088427..12088703,12089688..12090075, 12090151..12090625)) /gene="clp-3" /locus_tag="1M666" /codon_start=1 /evidence=experimental /product="CaLPain family member (clp-3)" /protein_id="17510079" /db_xref="GI:17510079" /db_xref="AceView/WormGenes:clp-3" /db_xref="LocusID:173089" // > 2152_NC_003279 protein_id:17508369; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M700"; intron(phase:2100,position:17,187,250,333); exon(number:5,size:16,170,63,83,18,sum:350); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(12114962..12115018,12115141..12115389, 12115433..12115620,12115675..12116183,12116419..12116468)) /gene="1M700" /locus_tag="1M700" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (1M700)" /protein_id="17508369" /db_xref="GI:17508369" /db_xref="AceView/WormGenes:1M700" /db_xref="LocusID:173093" // > 2175_NC_003279 protein_id:17505595; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M805"; intron(phase:1201,position:19,61,114,139); exon(number:5,size:18,42,53,25,60,sum:198); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12221180..12221234,12221990..12222116, 12222168..12222324,12222627..12222702,12222968..12223149) /gene="1M805" /locus_tag="1M805" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein of ancient origin (1M805)" /protein_id="17505595" /db_xref="GI:17505595" /db_xref="AceView/WormGenes:1M805" /db_xref="LocusID:173100" // > 2183_NC_003279 protein_id:17507283; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M839"; intron(phase:20121010,position:45,134,180,277,333,446,488,596); exon(number:9,size:44,89,46,97,56,113,42,108,87,sum:682); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12255821..12255954,12255999..12256263, 12256315..12256453,12256498..12256789,12256849..12257015, 12257060..12257397,12257443..12257569,12257621..12257943, 12257997..12258260) /gene="1M839" /locus_tag="1M839" /codon_start=1 /product="predicted CDS, acyltransferase 3 family (1M839)" /protein_id="17507283" /db_xref="GI:17507283" /db_xref="AceView/WormGenes:1M839" /db_xref="LocusID:185602" // > 2192_NC_003279 protein_id:17507301; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M858"; intron(phase:2010102,position:7,37,103,131,205,227,322); exon(number:8,size:6,30,66,28,74,22,95,95,sum:416); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(12284943..12285228,12285279..12285565, 12285615..12285679,12285941..12286163,12286210..12286292, 12286362..12286560,12286612..12286699,12286746..12286765)) /gene="1M858" /locus_tag="1M858" /codon_start=1 /product="predicted CDS, putative protein family member (1M858)" /protein_id="17507301" /db_xref="GI:17507301" /db_xref="AceView/WormGenes:1M858" /db_xref="LocusID:185611" // > 2200_NC_003279 protein_id:17507727; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M881"; intron(phase:0112022201222,position:77,115,164,180,207,242,301,408,526,650,707,747,792); exon(number:14,size:76,38,49,16,27,35,59,107,118,124,57,40,45,33,sum:824); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12305784..12306011,12306063..12306177, 12306227..12306373,12306424..12306472,12306520..12306598, 12306646..12306752,12306784..12306960,12307006..12307326, 12307375..12307726,12307781..12308153,12308196..12308367, 12308414..12308533,12308584..12308718,12308768..12308867) /gene="1M881" /locus_tag="1M881" /codon_start=1 /product="predicted CDS, putative membrane protein family member of ancient origin (1M881)" /protein_id="17507727" /db_xref="GI:17507727" /db_xref="AceView/WormGenes:1M881" /db_xref="LocusID:186418" // > 2209_NC_003279 protein_id:17506099; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M904"; intron(phase:11,position:52,83); exon(number:3,size:51,31,73,sum:155); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(12334500..12334720,12334764..12334856, 12334907..12335060)) /gene="1M904" /locus_tag="1M904" /codon_start=1 /product="predicted CDS, putative secreted or extracellular protein precursor (1M904)" /protein_id="17506099" /db_xref="GI:17506099" /db_xref="AceView/WormGenes:1M904" /db_xref="LocusID:183563" // > 2213_NC_003279 protein_id:17508989; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M931"; intron(phase:222,position:28,59,286); exon(number:4,size:27,31,227,40,sum:325); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12346018..12346100,12346150..12346242, 12346353..12347033,12347169..12347289) /gene="1M931" /locus_tag="1M931" /codon_start=1 /product="beta-1 3-glucuronyltransferase family member (1M931)" /protein_id="17508989" /db_xref="GI:17508989" /db_xref="AceView/WormGenes:1M931" /db_xref="LocusID:188329" // > 2221_NC_003279 protein_id:17508995; Caenorhabditis elegans chromosome I, complete sequence. /gene="1M947"; intron(phase:2122101,position:42,177,265,342,397,433,473); exon(number:8,size:41,135,88,77,55,36,40,38,sum:510); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12367992..12368116,12368160..12368563, 12368987..12369251,12369302..12369532,12369685..12369848, 12369903..12370009,12370152..12370272,12370318..12370433) /gene="1M947" /locus_tag="1M947" /codon_start=1 /product="predicted CDS, acyltransferase 3 family (1M947)" /protein_id="17508995" /db_xref="GI:17508995" /db_xref="AceView/WormGenes:1M947" /db_xref="LocusID:188332" // > 2262_NC_003279 protein_id:17508207; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N95"; intron(phase:2,position:109); exon(number:2,size:108,70,sum:178); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12512177..12512502,12512559..12512769) /gene="1N95" /locus_tag="1N95" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein of ancient origin (1N95)" /protein_id="17508207" /db_xref="GI:17508207" /db_xref="AceView/WormGenes:1N95" /db_xref="LocusID:187290" // > 2268_NC_003279 protein_id:17509489; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N129"; intron(phase:02111,position:110,139,203,312,342); exon(number:6,size:109,29,64,109,30,45,sum:386); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(12543376..12543702,12543788..12543876, 12543929..12544119,12544356..12544682,12544919..12545008, 12545264..12545400) /gene="1N129" /locus_tag="1N129" /codon_start=1 /evidence=experimental /product="high mobility group like (43.9 kD) (1N129)" /protein_id="17509489" /db_xref="GI:17509489" /db_xref="AceView/WormGenes:1N129" /db_xref="LocusID:173124" // > 2276_NC_003279 protein_id:17507129; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N170"; intron(phase:0102111,position:95,189,215,241,274,431,458); exon(number:8,size:94,94,26,26,33,157,27,31,sum:488); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(12586157..12586251,12586298..12586378, 12586423..12586893,12587966..12588063,12588106..12588185, 12588234..12588310,12588376..12588658,12588725..12589006)) /gene="1N170" /locus_tag="1N170" /codon_start=1 /product="predicted CDS, c-type lectin precursor family member (1N170)" /protein_id="17507129" /db_xref="GI:17507129" /db_xref="AceView/WormGenes:1N170" /db_xref="LocusID:185233" // > 2316_NC_003279 protein_id:17509459; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N322"; intron(phase:20022,position:57,109,153,211,278); exon(number:6,size:56,52,44,58,67,35,sum:312); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(12738138..12738243,12738420..12738620, 12739179..12739354,12739438..12739569,12740145..12740298, 12740576..12740745)) /gene="1N322" /locus_tag="1N322" /codon_start=1 /evidence=experimental /product="translational repressor like (1N322)" /protein_id="17509459" /db_xref="GI:17509459" /db_xref="AceView/WormGenes:1N322" /db_xref="LocusID:173142" // > 2367_NC_003279 protein_id:17509825; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N669"; intron(phase:000,position:13,47,80); exon(number:4,size:12,34,33,38,sum:117); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(13084669..13084704,13084762..13084863, 13085686..13085784,13086607..13086723) /gene="1N669" /locus_tag="1N669" /codon_start=1 /product="predicted CDS, putative protein (1N669)" /protein_id="17509825" /db_xref="GI:17509825" /db_xref="AceView/WormGenes:1N669" /db_xref="LocusID:189546" // > 2395_NC_003279 protein_id:17511175; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N825"; intron(phase:001210,position:57,89,203,228,383,468); exon(number:7,size:56,32,114,25,155,85,69,sum:536); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(13240298..13240465,13240514..13240609, 13240657..13240999,13241047..13241122,13241173..13241636, 13242193..13242446,13242497..13242706) /gene="1N825" /locus_tag="1N825" /codon_start=1 /evidence=experimental /product="putative membrane protein (1N825)" /protein_id="17511175" /db_xref="GI:17511175" /db_xref="AceView/WormGenes:1N825" /db_xref="LocusID:191507" // > 2398_NC_003279 protein_id:17511179; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N835"; intron(phase:00011,position:17,58,101,188,650); exon(number:6,size:16,41,43,87,462,18,sum:667); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(13249817..13249864,13249914..13250036, 13250085..13250213,13250260..13250521,13251157..13252542, 13252598..13252653) /gene="1N835" /locus_tag="1N835" /codon_start=1 /evidence=experimental /product="putative nuclear protein family member (1N835)" /protein_id="17511179" /db_xref="GI:17511179" /db_xref="AceView/WormGenes:1N835" /db_xref="LocusID:173188" // > 2401_NC_003279 protein_id:17507337; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N847"; intron(phase:2002020,position:52,85,197,256,509,541,564); exon(number:8,size:51,33,112,59,253,32,23,75,sum:638); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(13262187..13262341,13262388..13262484, 13263259..13263594,13264147..13264325,13264369..13265125, 13265172..13265269,13265319..13265385,13265486..13265713) /gene="1N847" /locus_tag="1N847" /codon_start=1 /product="small optic lobes family member (1N847)" /protein_id="17507337" /db_xref="GI:17507337" /db_xref="AceView/WormGenes:1N847" /db_xref="LocusID:185746" // > 2404_NC_003279 protein_id:17507339; Caenorhabditis elegans chromosome I, complete sequence. /gene="1N856"; intron(phase:21,position:345,510); exon(number:3,size:344,165,50,sum:559); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(13271849..13272000,13272063..13272556, 13272613..13273646)) /gene="1N856" /locus_tag="1N856" /codon_start=1 /evidence=experimental /product="putative protein family member, with 2 coiled coil-4 domains (1N856)" /protein_id="17507339" /db_xref="GI:17507339" /db_xref="AceView/WormGenes:1N856" /db_xref="LocusID:173190" // > 2436_NC_003279 protein_id:17509957; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O20"; intron(phase:20,position:27,95); exon(number:3,size:26,68,29,sum:123); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(13434580..13434669,13436180..13436381, 13436431..13436510)) /gene="1O20" /locus_tag="1O20" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil domain, of bilaterial origin (15.0 kD) (1O20)" /protein_id="17509957" /db_xref="GI:17509957" /db_xref="AceView/WormGenes:1O20" /db_xref="LocusID:173211" // > 2444_NC_003279 protein_id:17510185; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O83"; intron(phase:21,position:23,145); exon(number:3,size:22,122,136,sum:280); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(13497638..13497705,13497764..13498128, 13498692..13499101) /gene="1O83" /locus_tag="1O83" /codon_start=1 /evidence=experimental /product="esterase D (31.2 kD) (1O83)" /protein_id="17510185" /db_xref="GI:17510185" /db_xref="AceView/WormGenes:1O83" /db_xref="LocusID:173220" // > 2471_NC_003279 protein_id:17509691; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O284"; intron(phase:20000000,position:20,54,83,330,356,397,463,1800); exon(number:9,size:19,34,29,247,26,41,66,1337,30,sum:1829); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(13703742..13703834,13703885..13707895, 13707940..13708137,13708192..13708314,13708362..13708439, 13708547..13709287,13709933..13710019,13710066..13710165, 13711325..13711383)) /gene="1O284" /locus_tag="1O284" /codon_start=1 /product="putative protein, with 2 coiled coil-4 domains (1O284)" /protein_id="17509691" /db_xref="GI:17509691" /db_xref="AceView/WormGenes:1O284" /db_xref="LocusID:189366" // > 2489_NC_003279 protein_id:17509553; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O428"; intron(phase:00211200,position:37,129,199,256,271,497,554,614); exon(number:9,size:36,92,70,57,15,226,57,60,54,sum:667); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(13843469..13843633,13843830..13844009, 13844715..13844883,13844945..13845623,13846785..13846829, 13846871..13847040,13847089..13847300,13847571..13847846, 13847930..13848037)) /gene="1O428" /locus_tag="1O428" /codon_start=1 /evidence=experimental /product="BRCT domain containing protein (1O428)" /protein_id="17509553" /db_xref="GI:17509553" /db_xref="AceView/WormGenes:1O428" /db_xref="LocusID:173252" // > 2519_NC_003279 protein_id:17507431; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O651"; intron(phase:220,position:51,113,176); exon(number:4,size:50,62,63,32,sum:207); {splice:gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14067457..14067608,14068131..14068316, 14068507..14068693,14068756..14068854) /gene="1O651" /locus_tag="1O651" /codon_start=1 /product="putative nuclear protein family member (1O651)" /protein_id="17507431" /db_xref="GI:17507431" /db_xref="AceView/WormGenes:1O651" /db_xref="LocusID:185946" // > 2525_NC_003279 protein_id:17510371; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O679"; intron(phase:20,position:28,174); exon(number:3,size:27,146,104,sum:277); {splice:gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14092560..14092642,14092687..14093122, 14095074..14095388) /gene="1O679" /locus_tag="1O679" /codon_start=1 /evidence=experimental /product="cyclin-like F-box (1O679)" /protein_id="17510371" /db_xref="GI:17510371" /db_xref="AceView/WormGenes:1O679" /db_xref="LocusID:173274" // > 2546_NC_003279 protein_id:17506137; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O803"; intron(phase:1,position:133); exon(number:2,size:132,114,sum:246); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14222229..14222625,14223484..14223827) /gene="1O803" /locus_tag="1O803" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (1O803)" /protein_id="17506137" /db_xref="GI:17506137" /db_xref="AceView/WormGenes:1O803" /db_xref="LocusID:183585" // > 2573_NC_003279 protein_id:32563931; Caenorhabditis elegans chromosome I, complete sequence. /gene="1O974"; intron(phase:1011,position:75,105,154,217); exon(number:5,size:74,30,49,63,134,sum:350); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(14389492..14389895,14389946..14390134, 14390795..14390942,14390993..14391081,14392552..14392774)) /gene="1O974" /locus_tag="1O974" /codon_start=1 /evidence=experimental /product="zn-binding protein, LIM (1O974)" /protein_id="32563931" /db_xref="GI:32563931" /db_xref="AceView/WormGenes:1O974" /db_xref="LocusID:173301" // > 2582_NC_003279 protein_id:25145466; Caenorhabditis elegans chromosome I, complete sequence. /gene="1P67"; intron(phase:00010,position:67,114,297,345,443); exon(number:6,size:66,47,183,48,98,44,sum:486); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14477543..14477740,14477795..14477935, 14478435..14478983,14481295..14481439,14482676..14482968, 14484388..14484522) /gene="1P67" /locus_tag="1P67" /codon_start=1 /evidence=experimental /product="DNA methyltransferase protein 1 (55.8 kD) (1P67)" /protein_id="25145466" /db_xref="GI:25145466" /db_xref="AceView/WormGenes:1P67" /db_xref="LocusID:173310" // > 2587_NC_003279 protein_id:32563792; Caenorhabditis elegans chromosome I, complete sequence. /gene="1P137"; intron(phase:00202020012,position:33,51,92,126,262,340,658,840,879,901,1013); exon(number:12,size:32,18,41,34,136,78,318,182,39,22,112,97,sum:1109); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14537569..14537664,14540014..14540067, 14543989..14544113,14544939..14545038,14545096..14545505, 14545772..14546003,14547230..14548185,14549301..14549844, 14550301..14550417,14551377..14551443,14551493..14551829, 14552658..14552949) /gene="1P137" /locus_tag="1P137" /codon_start=1 /evidence=experimental /product="PDZ/DHR/GLGF domain and guanylate kinase and ZU5 domain containing protein (1P137)" /protein_id="32563792" /db_xref="GI:32563792" /db_xref="AceView/WormGenes:1P137" /db_xref="LocusID:173316" // > 2601_NC_003279 protein_id:17510275; Caenorhabditis elegans chromosome I, complete sequence. /gene="npp-4"; intron(phase:2121,position:143,174,316,466); exon(number:5,size:142,31,142,150,73,sum:538); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS complement(join(14709347..14709567,14711046..14711494, 14712747..14713173,14713995..14714086,14714130..14714557)) /gene="npp-4" /locus_tag="1P294" /codon_start=1 /evidence=experimental /product="nuclear Pore complex Protein NPP-4, nucleoporin FG repeat (54.4 kD) (npp-4)" /protein_id="17510275" /db_xref="GI:17510275" /db_xref="AceView/WormGenes:npp-4" /db_xref="LocusID:173329" // > 2631_NC_003279 protein_id:17507041; Caenorhabditis elegans chromosome I, complete sequence. /gene="srw-92"; intron(phase:22002,position:68,161,175,190,224); exon(number:6,size:67,93,14,15,34,60,sum:283); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14834595..14834797,14834839..14835117, 14835162..14835201,14835320..14835364,14835485..14835588, 14835636..14835816) /gene="srw-92" /locus_tag="1P419" /codon_start=1 /product="serpentine Receptor, class W (srw-92)" /protein_id="17507041" /db_xref="GI:17507041" /db_xref="AceView/WormGenes:srw-92" /db_xref="LocusID:185185" // > 2635_NC_003279 protein_id:17507051; Caenorhabditis elegans chromosome I, complete sequence. /gene="1P441"; intron(phase:000001,position:75,381,440,568,729,818); exon(number:7,size:74,306,59,128,161,89,61,sum:878); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(14854515..14854736,14854782..14855699, 14855786..14855962,14856108..14856491,14856606..14857088, 14857403..14857670,14857713..14857897) /gene="1P441" /locus_tag="1P441" /codon_start=1 /evidence=experimental /product="putative protein family member, with a coiled coil-4 domain, of bilaterial origin (1P441)" /protein_id="17507051" /db_xref="GI:17507051" /db_xref="AceView/WormGenes:1P441" /db_xref="LocusID:173357" // > 2657_NC_003279 protein_id:17507141; Caenorhabditis elegans chromosome I, complete sequence. /gene="1P627"; intron(phase:0,position:200); exon(number:2,size:199,30,sum:229); {splice:gtag} LOCUS NC_003279 15080471 bp DNA linear INV 14-JUL-2003 DEFINITION Caenorhabditis elegans chromosome I, complete sequence. ACCESSION NC_003279 VERSION NC_003279.2 GI:25167480 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15080471) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15080471) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15080471 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="I" _HEADER_END_ CDS join(15042569..15043165,15043221..15043313) /gene="1P627" /locus_tag="1P627" /codon_start=1 /evidence=experimental /product="A acidic family member (24.9 kD) (1P627)" /protein_id="17507141" /db_xref="GI:17507141" /db_xref="AceView/WormGenes:1P627" /db_xref="LocusID:173372" // > 2667_NC_003280 protein_id:17531405; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A305"; intron(phase:0220002201,position:26,60,105,139,213,320,369,467,509,573); exon(number:11,size:25,34,45,34,74,107,49,98,42,64,40,sum:612); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(12986..13060,13104..13207,13251..13385,13433..13532, 13579..13800,13849..14169,14577..14725,14770..15063, 15114..15237,15498..15690,15737..15858) /gene="2A305" /locus_tag="2A305" /codon_start=1 /evidence=experimental /product="putative membrane protein, family 8 (71.0 kD) (2A305)" /protein_id="17531405" /db_xref="GI:17531405" /db_xref="AceView/WormGenes:2A305" /db_xref="LocusID:173379" // > 2668_NC_003280 protein_id:17531411; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A308"; intron(phase:0,position:140); exon(number:2,size:139,190,sum:329); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(16602..17174,17223..17639)) /gene="2A308" /locus_tag="2A308" /codon_start=1 /evidence=experimental /product="transposable element tc3 transposase family member (2A308)" /protein_id="17531411" /db_xref="GI:17531411" /db_xref="AceView/WormGenes:2A308" /db_xref="LocusID:173380" // > 2680_NC_003280 protein_id:17533463; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A337"; intron(phase:000,position:46,96,388); exon(number:4,size:45,50,292,45,sum:432); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(45045..45179,45229..45378,46114..46989,47234..47371) /gene="2A337" /locus_tag="2A337" /codon_start=1 /evidence=experimental /product="putative nuclear protein (48.9 kD) (2A337)" /protein_id="17533463" /db_xref="GI:17533463" /db_xref="AceView/WormGenes:2A337" /db_xref="LocusID:173386" // > 2709_NC_003280 protein_id:17535885; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A476"; intron(phase:0001,position:25,87,197,299); exon(number:5,size:24,62,110,102,39,sum:337); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(187371..187489,187541..187847, 188198..188527,188897..189082,189131..189202)) /gene="2A476" /locus_tag="2A476" /codon_start=1 /product="predicted CDS, putative protein, with at least 5 transmembrane domains (2A476)" /protein_id="17535885" /db_xref="GI:17535885" /db_xref="AceView/WormGenes:2A476" /db_xref="LocusID:187950" // > 2726_NC_003280 protein_id:17531321; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A579"; intron(phase:222,position:70,106,148); exon(number:4,size:69,36,42,33,sum:180); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(288938..289146,289762..289869,289975..290100, 290205..290304) /gene="2A579" /locus_tag="2A579" /codon_start=1 /evidence=experimental /product="mitochondrial ribosomal protein L41 like (20.9 kD) (2A579)" /protein_id="17531321" /db_xref="GI:17531321" /db_xref="AceView/WormGenes:2A579" /db_xref="LocusID:173415" // > 2750_NC_003280 protein_id:17531465; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A677"; intron(phase:102,position:2,16,234); exon(number:4,size:1,14,218,54,sum:287); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(386238..386241,386293..386333,386383..387038, 387658..387820) /gene="2A677" /locus_tag="2A677" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil-4 domain (32.0 kD) (2A677)" /protein_id="17531465" /db_xref="GI:17531465" /db_xref="AceView/WormGenes:2A677" /db_xref="LocusID:173427" // > 2756_NC_003280 protein_id:17532045; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A706"; intron(phase:122000,position:31,61,109,137,203,227); exon(number:7,size:30,30,48,28,66,24,34,sum:260); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(417348..417452,417661..417732, 417866..418063,418120..418201,418436..418579, 418683..418773,418818..418908)) /gene="2A706" /locus_tag="2A706" /codon_start=1 /product="putative protein, with a coiled coil-4 domain (2A706)" /protein_id="17532045" /db_xref="GI:17532045" /db_xref="AceView/WormGenes:2A706" /db_xref="LocusID:182868" // > 2768_NC_003280 protein_id:17536841; Caenorhabditis elegans chromosome II, complete sequence. /gene="2A760"; intron(phase:0,position:54); exon(number:2,size:53,56,sum:109); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(468509..468679,470311..470469)) /gene="2A760" /locus_tag="2A760" /codon_start=1 /evidence=experimental /product="maggie like (12.2 kD) (2A760)" /protein_id="17536841" /db_xref="GI:17536841" /db_xref="AceView/WormGenes:2A760" /db_xref="LocusID:173436" // > 2846_NC_003280 protein_id:17534159; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B111"; intron(phase:0100012,position:27,98,138,198,240,260,301); exon(number:8,size:26,71,40,60,42,20,41,69,sum:369); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(823835..823912,823956..824169,824215..824333, 824380..824559,824600..824725,824768..824828, 824873..824996,825044..825251) /gene="2B111" /locus_tag="2B111" /codon_start=1 /product="predicted CDS, putative protein family member (2B111)" /protein_id="17534159" /db_xref="GI:17534159" /db_xref="AceView/WormGenes:2B111" /db_xref="LocusID:185863" // > 2911_NC_003280 protein_id:17534081; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B311"; intron(phase:20020,position:72,98,141,223,297); exon(number:6,size:71,26,43,82,74,19,sum:315); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1019443..1019657,1019756..1019831,1019880..1020008, 1020052..1020299,1020345..1020564,1020749..1020808) /gene="2B311" /locus_tag="2B311" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (2B311)" /protein_id="17534081" /db_xref="GI:17534081" /db_xref="AceView/WormGenes:2B311" /db_xref="LocusID:185780" // > 2943_NC_003280 protein_id:17536415; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B457"; intron(phase:2122,position:47,82,110,176); exon(number:5,size:46,35,28,66,86,sum:261); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1166495..1166634,1166681..1166784,1167416..1167500, 1167559..1167756,1168913..1169171) /gene="2B457" /locus_tag="2B457" /codon_start=1 /product="predicted CDS, dienelactone hydrolase family protein precursor (2B457)" /protein_id="17536415" /db_xref="GI:17536415" /db_xref="AceView/WormGenes:2B457" /db_xref="LocusID:188807" // > 2961_NC_003280 protein_id:17537679; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B590"; intron(phase:000,position:36,86,116); exon(number:4,size:35,50,30,54,sum:169); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1300080..1300244,1300326..1300415, 1300805..1300954,1301399..1301503)) /gene="2B590" /locus_tag="2B590" /codon_start=1 /evidence=experimental /product="putative N-myristoylated protein (20.0 kD) (2B590)" /protein_id="17537679" /db_xref="GI:17537679" /db_xref="AceView/WormGenes:2B590" /db_xref="LocusID:190362" // > 2981_NC_003280 protein_id:17537375; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B709"; intron(phase:12,position:46,58); exon(number:3,size:45,12,112,sum:169); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1417899..1418034,1418655..1418691,1419734..1420070) /gene="2B709" /locus_tag="2B709" /codon_start=1 /product="predicted CDS, dna repair protein (2B709)" /protein_id="17537375" /db_xref="GI:17537375" /db_xref="AceView/WormGenes:2B709" /db_xref="LocusID:190175" // > 2986_NC_003280 protein_id:17537371; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B735"; intron(phase:02,position:60,175); exon(number:3,size:59,115,72,sum:246); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1445230..1445406,1445472..1445818,1445864..1446080) /gene="2B735" /locus_tag="2B735" /codon_start=1 /product="allergen V5/Tpx-1 related family member (2B735)" /protein_id="17537371" /db_xref="GI:17537371" /db_xref="AceView/WormGenes:2B735" /db_xref="LocusID:190174" // > 2988_NC_003280 protein_id:17537369; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B757"; intron(phase:022120,position:97,191,231,258,282,306); exon(number:7,size:96,94,40,27,24,24,143,sum:448); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1467752..1468039,1468089..1468372,1468422..1468541, 1468750..1468829,1468880..1468952,1468999..1469068, 1469128..1469559) /gene="2B757" /locus_tag="2B757" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein family member precursor (46.3 kD) (2B757)" /protein_id="17537369" /db_xref="GI:17537369" /db_xref="AceView/WormGenes:2B757" /db_xref="LocusID:190173" // > 2996_NC_003280 protein_id:17537361; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B823"; intron(phase:220,position:47,60,100); exon(number:4,size:46,13,40,54,sum:153); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1533519..1533658,1533769..1533807,1533849..1533966, 1534028..1534192) /gene="2B823" /locus_tag="2B823" /codon_start=1 /product="putative membrane protein (2B823)" /protein_id="17537361" /db_xref="GI:17537361" /db_xref="AceView/WormGenes:2B823" /db_xref="LocusID:190169" // > 3000_NC_003280 protein_id:17534919; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B833"; intron(phase:2202200,position:28,297,344,409,551,597,667); exon(number:8,size:27,269,47,65,142,46,70,87,sum:753); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1538896..1538978,1539032..1539838,1540429..1540567, 1540609..1540805,1541145..1541570,1541716..1541851, 1541898..1542107,1542460..1542723) /gene="2B833" /locus_tag="2B833" /codon_start=1 /product="predicted CDS, serum paraoxonase arylesterase family member (2B833)" /protein_id="17534919" /db_xref="GI:17534919" /db_xref="AceView/WormGenes:2B833" /db_xref="LocusID:187035" // > 3002_NC_003280 protein_id:17534921; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B838"; intron(phase:22001,position:225,303,377,391,426); exon(number:6,size:224,78,74,14,35,66,sum:491); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1547065..1547264,1547312..1547417, 1547463..1547504,1547598..1547817,1548975..1549208, 1549284..1549957)) /gene="2B838" /locus_tag="2B838" /codon_start=1 /product="k+ channel tetramerisation containing protein family member (2B838)" /protein_id="17534921" /db_xref="GI:17534921" /db_xref="AceView/WormGenes:2B838" /db_xref="LocusID:187036" // > 3029_NC_003280 protein_id:32565213; Caenorhabditis elegans chromosome II, complete sequence. /gene="srg-20"; intron(phase:00,position:80,262); exon(number:3,size:79,182,85,sum:346); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1636694..1636930,1637732..1638277,1638328..1638585) /gene="srg-20" /locus_tag="2B929" /codon_start=1 /product="serpentine Receptor, class G (gamma) (srg-20)" /protein_id="32565213" /db_xref="GI:32565213" /db_xref="AceView/WormGenes:srg-20" /db_xref="LocusID:191110" // > 3034_NC_003280 protein_id:17537761; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B940"; intron(phase:2,position:28); exon(number:2,size:27,211,sum:238); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1650821..1651454,1651500..1651582)) /gene="2B940" /locus_tag="2B940" /codon_start=1 /product="cyclin-like F-box family member (2B940)" /protein_id="17537761" /db_xref="GI:17537761" /db_xref="AceView/WormGenes:2B940" /db_xref="LocusID:191114" // > 3043_NC_003280 protein_id:17537771; Caenorhabditis elegans chromosome II, complete sequence. /gene="srw-97"; intron(phase:2220,position:103,197,274,357); exon(number:5,size:102,94,77,83,16,sum:372); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1667524..1667574,1667641..1667887, 1667937..1668167,1668210..1668491,1668708..1669015)) /gene="srw-97" /locus_tag="2B958" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-97)" /protein_id="17537771" /db_xref="GI:17537771" /db_xref="AceView/WormGenes:srw-97" /db_xref="LocusID:191118" // > 3055_NC_003280 protein_id:17534521; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B986"; intron(phase:201,position:66,79,121); exon(number:4,size:65,13,42,48,sum:168); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1694856..1695001,1695053..1695179, 1695453..1695489,1695654..1695850)) /gene="2B986" /locus_tag="2B986" /codon_start=1 /product="putative cytoplasmic protein family member (2B986)" /protein_id="17534521" /db_xref="GI:17534521" /db_xref="AceView/WormGenes:2B986" /db_xref="LocusID:186517" // > 3060_NC_003280 protein_id:17534063; Caenorhabditis elegans chromosome II, complete sequence. /gene="2B997"; intron(phase:111,position:38,70,106); exon(number:4,size:37,32,36,54,sum:159); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1708434..1708545,1708680..1708775,1708850..1708957, 1709535..1709698) /gene="2B997" /locus_tag="2B997" /codon_start=1 /product="predicted CDS, putative protein family member (2B997)" /protein_id="17534063" /db_xref="GI:17534063" /db_xref="AceView/WormGenes:2B997" /db_xref="LocusID:185771" // > 3071_NC_003280 protein_id:17534077; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C26"; intron(phase:11001,position:32,117,283,441,482); exon(number:6,size:31,85,166,158,41,25,sum:506); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1736868..1736944,1736993..1737116, 1737165..1737638,1737691..1738187,1738549..1738803, 1738853..1738946)) /gene="2C26" /locus_tag="2C26" /codon_start=1 /product="epidermal growth-factor receptor , L domain containing protein family member (2C26)" /protein_id="17534077" /db_xref="GI:17534077" /db_xref="AceView/WormGenes:2C26" /db_xref="LocusID:185777" // > 3096_NC_003280 protein_id:17536141; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C118"; intron(phase:20,position:224,457); exon(number:3,size:223,233,78,sum:534); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1833629..1833865,1833940..1834636, 1835115..1835785)) /gene="2C118" /locus_tag="2C118" /codon_start=1 /product="putative cytoplasmic protein family member (2C118)" /protein_id="17536141" /db_xref="GI:17536141" /db_xref="AceView/WormGenes:2C118" /db_xref="LocusID:188290" // > 3112_NC_003280 protein_id:17531805; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C141"; intron(phase:21,position:35,128); exon(number:3,size:34,93,43,sum:170); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1875959..1876062,1876117..1876394,1876730..1876860) /gene="2C141" /locus_tag="2C141" /codon_start=1 /product="predicted CDS, Meprin/TRAF-like MATH family member (2C141)" /protein_id="17531805" /db_xref="GI:17531805" /db_xref="AceView/WormGenes:2C141" /db_xref="LocusID:182657" // > 3117_NC_003280 protein_id:17531823; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C150"; intron(phase:212,position:32,122,164); exon(number:4,size:31,90,42,111,sum:274); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(1885440..1885773,1885818..1885944, 1886067..1886335,1886386..1886480)) /gene="2C150" /locus_tag="2C150" /codon_start=1 /product="predicted CDS, Meprin/TRAF-like MATH family member (2C150)" /protein_id="17531823" /db_xref="GI:17531823" /db_xref="AceView/WormGenes:2C150" /db_xref="LocusID:182666" // > 3140_NC_003280 protein_id:17537841; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C227"; intron(phase:0,position:53); exon(number:2,size:52,291,sum:343); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1935754..1935909,1935951..1936826) /gene="2C227" /locus_tag="2C227" /codon_start=1 /evidence=experimental /product="transposable element tcb1 transposase (2C227)" /protein_id="17537841" /db_xref="GI:17537841" /db_xref="AceView/WormGenes:2C227" /db_xref="LocusID:191260" // > 3142_NC_003280 protein_id:17537839; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C233"; intron(phase:1,position:45); exon(number:2,size:44,301,sum:345); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(1941947..1942079,1942202..1943106) /gene="2C233" /locus_tag="2C233" /codon_start=1 /product="predicted CDS, POL-like family member (2C233)" /protein_id="17537839" /db_xref="GI:17537839" /db_xref="AceView/WormGenes:2C233" /db_xref="LocusID:191259" // > 3158_NC_003280 protein_id:17534625; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C300"; intron(phase:0200,position:17,39,95,143); exon(number:5,size:16,22,56,48,74,sum:216); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2011487..2011711,2011756..2011899, 2012092..2012257,2012309..2012376,2012425..2012472)) /gene="2C300" /locus_tag="2C300" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (2C300)" /protein_id="17534625" /db_xref="GI:17534625" /db_xref="AceView/WormGenes:2C300" /db_xref="LocusID:186645" // > 3174_NC_003280 protein_id:17532917; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C344"; intron(phase:0002111,position:77,135,168,227,276,306,339); exon(number:8,size:76,58,33,59,49,30,33,46,sum:384); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2054010..2054149,2054287..2054385, 2054441..2054530,2056076..2056221,2057438..2057616, 2058445..2058543,2058588..2058761,2058836..2059063)) /gene="2C344" /locus_tag="2C344" /codon_start=1 /evidence=experimental /product="zinc-finger protein like (43.0 kD) (2C344)" /protein_id="17532917" /db_xref="GI:17532917" /db_xref="AceView/WormGenes:2C344" /db_xref="LocusID:173564" // > 3175_NC_003280 protein_id:17532919; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C348"; intron(phase:001110,position:223,260,304,321,366,462); exon(number:7,size:222,37,44,17,45,96,43,sum:504); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2059785..2059916,2060349..2060635, 2060878..2061012,2061157..2061207,2061333..2061465, 2061742..2061852,2063179..2063844)) /gene="2C348" /locus_tag="2C348" /codon_start=1 /product="predicted CDS, putative protein family member (2C348)" /protein_id="17532919" /db_xref="GI:17532919" /db_xref="AceView/WormGenes:2C348" /db_xref="LocusID:184143" // > 3179_NC_003280 protein_id:17532925; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C362"; intron(phase:00010200,position:9,35,80,125,151,179,241,344); exon(number:9,size:8,26,45,45,26,28,62,103,69,sum:412); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2076291..2076500,2076553..2076861, 2078338..2078521,2078564..2078649,2078714..2078790, 2078841..2078976,2079019..2079153,2079201..2079278, 2079383..2079406)) /gene="2C362" /locus_tag="2C362" /codon_start=1 /product="predicted CDS, putative nuclear protein (2C362)" /protein_id="17532925" /db_xref="GI:17532925" /db_xref="AceView/WormGenes:2C362" /db_xref="LocusID:184146" // > 3188_NC_003280 protein_id:17535627; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C395"; intron(phase:21212,position:36,78,120,215,253); exon(number:6,size:35,42,42,95,38,127,sum:379); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2104524..2104630,2104946..2105070,2105294..2105420, 2105472..2105755,2105805..2105919,2106485..2106866) /gene="2C395" /locus_tag="2C395" /codon_start=1 /product="Meprin/TRAF-like MATH family member (2C395)" /protein_id="17535627" /db_xref="GI:17535627" /db_xref="AceView/WormGenes:2C395" /db_xref="LocusID:187877" // > 3209_NC_003280 protein_id:17532267; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C460"; intron(phase:002,position:79,152,188); exon(number:4,size:78,73,36,104,sum:291); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2170325..2170637,2170796..2170905, 2172593..2172811,2172986..2173219)) /gene="2C460" /locus_tag="2C460" /codon_start=1 /product="integral membrane protein Srb, nematode type family member (2C460)" /protein_id="17532267" /db_xref="GI:17532267" /db_xref="AceView/WormGenes:2C460" /db_xref="LocusID:183153" // > 3211_NC_003280 protein_id:17532261; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C471"; intron(phase:101101200020,position:19,47,82,133,178,202,234,315,359,388,442,485); exon(number:13,size:18,28,35,51,45,24,32,81,44,29,54,43,39,sum:523); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2176947..2177001,2177052..2177134,2177737..2177842, 2178036..2178188,2178536..2178669,2178718..2178790, 2179357..2179453,2179503..2179743,2180272..2180403, 2180454..2180540,2180670..2180833,2181590..2181716, 2181766..2181885) /gene="2C471" /locus_tag="2C471" /codon_start=1 /evidence=experimental /product="glucocerebrosidase precursor family member (58.2 kD) (2C471)" /protein_id="17532261" /db_xref="GI:17532261" /db_xref="AceView/WormGenes:2C471" /db_xref="LocusID:173574" // > 3223_NC_003280 protein_id:17534309; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C543"; intron(phase:000011,position:25,249,304,349,476,535); exon(number:7,size:24,224,55,45,127,59,52,sum:586); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2248869..2248940,2248996..2249667,2250574..2250738, 2251241..2251375,2251638..2252019,2253162..2253338, 2253803..2253960) /gene="2C543" /locus_tag="2C543" /codon_start=1 /evidence=experimental /product="microtubule Associated Protein (2C543)" /protein_id="17534309" /db_xref="GI:17534309" /db_xref="AceView/WormGenes:2C543" /db_xref="LocusID:173582" // > 3247_NC_003280 protein_id:17533953; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C627"; intron(phase:100201,position:26,83,108,170,187,273); exon(number:7,size:25,57,25,62,17,86,23,sum:295); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2335937..2336012,2336523..2336692,2336743..2336817, 2336886..2337073,2337121..2337169,2337277..2337535, 2337582..2337652) /gene="2C627" /locus_tag="2C627" /codon_start=1 /evidence=experimental /product="RING zinc finger containing protein family member (34.1 kD) (2C627)" /protein_id="17533953" /db_xref="GI:17533953" /db_xref="AceView/WormGenes:2C627" /db_xref="LocusID:173591" // > 3248_NC_003280 protein_id:17533957; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C628"; intron(phase:102,position:49,123,192); exon(number:4,size:48,74,69,148,sum:339); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2337962..2338406,2338669..2338877, 2339794..2340014,2340593..2340737)) /gene="2C628" /locus_tag="2C628" /codon_start=1 /evidence=experimental /product="putative nuclear protein (38.9 kD) (2C628)" /protein_id="17533957" /db_xref="GI:17533957" /db_xref="AceView/WormGenes:2C628" /db_xref="LocusID:173592" // > 3260_NC_003280 protein_id:17533265; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C663"; intron(phase:10,position:61,107); exon(number:3,size:60,46,80,sum:186); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2372390..2372570,2373758..2373894,2373939..2374181) /gene="2C663" /locus_tag="2C663" /codon_start=1 /product="predicted CDS, putative secreted or extracellular protein family member precursor (2C663)" /protein_id="17533265" /db_xref="GI:17533265" /db_xref="AceView/WormGenes:2C663" /db_xref="LocusID:184578" // > 3265_NC_003280 protein_id:17533277; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C676"; intron(phase:1010,position:8,82,116,162); exon(number:5,size:7,74,34,46,65,sum:226); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2384226..2384423,2384473..2384609, 2384906..2385008,2385404..2385624,2386688..2386709)) /gene="2C676" /locus_tag="2C676" /codon_start=1 /evidence=experimental /product="putative protein family member (2C676)" /protein_id="17533277" /db_xref="GI:17533277" /db_xref="AceView/WormGenes:2C676" /db_xref="LocusID:173593" // > 3290_NC_003280 protein_id:17534879; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C821"; intron(phase:001,position:31,72,110); exon(number:4,size:30,41,38,69,sum:178); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2529291..2529380,2530801..2530923,2531107..2531221, 2531267..2531475) /gene="2C821" /locus_tag="2C821" /codon_start=1 /product="polymerase delta-interacting protein 1 like family member (2C821)" /protein_id="17534879" /db_xref="GI:17534879" /db_xref="AceView/WormGenes:2C821" /db_xref="LocusID:186909" // > 3306_NC_003280 protein_id:17535857; Caenorhabditis elegans chromosome II, complete sequence. /gene="sri-71"; intron(phase:0000,position:53,96,169,311); exon(number:5,size:52,43,73,142,10,sum:320); {splice:gtag,gtag,gtag,tagg} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2627748..2627903,2628109..2628237,2628280..2628498, 2628689..2629114,2629163..2629195) /gene="sri-71" /locus_tag="2C917" /codon_start=1 /product="serpentine Receptor, class I (sri-71)" /protein_id="17535857" /db_xref="GI:17535857" /db_xref="AceView/WormGenes:sri-71" /db_xref="LocusID:191928" // > 3311_NC_003280 protein_id:17533427; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C931"; intron(phase:001020,position:38,128,165,210,224,265); exon(number:7,size:37,90,37,45,14,41,12,sum:276); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2640080..2640190,2640239..2640508,2640973..2641084, 2641136..2641269,2641471..2641514,2641561..2641681, 2641733..2641771) /gene="2C931" /locus_tag="2C931" /codon_start=1 /evidence=experimental /product="tumor necrosis factor protein like family member (2C931)" /protein_id="17533427" /db_xref="GI:17533427" /db_xref="AceView/WormGenes:2C931" /db_xref="LocusID:173610" // > 3315_NC_003280 protein_id:32564778; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C938"; intron(phase:1,position:8); exon(number:2,size:7,91,sum:98); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2647937..2648211,2648454..2648475)) /gene="2C938" /locus_tag="2C938" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (2C938)" /protein_id="32564778" /db_xref="GI:32564778" /db_xref="AceView/WormGenes:2C938" /db_xref="LocusID:184841" // > 3324_NC_003280 protein_id:17533443; Caenorhabditis elegans chromosome II, complete sequence. /gene="sri-57"; intron(phase:210012,position:30,182,242,315,419,458); exon(number:7,size:29,152,60,73,104,39,21,sum:478); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2670551..2670614,2670681..2670798, 2670848..2671160,2671525..2671743,2671790..2671968, 2672762..2673216,2673497..2673585)) /gene="sri-57" /locus_tag="2C960" /codon_start=1 /product="serpentine Receptor, class I (sri-57)" /protein_id="17533443" /db_xref="GI:17533443" /db_xref="AceView/WormGenes:sri-57" /db_xref="LocusID:184844" // > 3327_NC_003280 protein_id:17533665; Caenorhabditis elegans chromosome II, complete sequence. /gene="2C970"; intron(phase:2,position:70); exon(number:2,size:69,309,sum:378); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2679549..2680476,2681008..2681216)) /gene="2C970" /locus_tag="2C970" /codon_start=1 /evidence=experimental /product="cyclin-like F-box (2C970)" /protein_id="17533665" /db_xref="GI:17533665" /db_xref="AceView/WormGenes:2C970" /db_xref="LocusID:173612" // > 3346_NC_003280 protein_id:17533553; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D43"; intron(phase:01,position:25,109); exon(number:3,size:24,84,45,sum:153); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(2753297..2753368,2753431..2753683,2754261..2754397) /gene="2D43" /locus_tag="2D43" /codon_start=1 /product="putative secreted or extracellular protein family member precursor (2D43)" /protein_id="17533553" /db_xref="GI:17533553" /db_xref="AceView/WormGenes:2D43" /db_xref="LocusID:185103" // > 3375_NC_003280 protein_id:17537713; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D132"; intron(phase:10,position:55,102); exon(number:3,size:54,47,54,sum:155); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2841049..2841213,2841278..2841417, 2841464..2841626)) /gene="2D132" /locus_tag="2D132" /codon_start=1 /product="putative secreted or extracellular protein family member precursor (2D132)" /protein_id="17537713" /db_xref="GI:17537713" /db_xref="AceView/WormGenes:2D132" /db_xref="LocusID:190937" // > 3399_NC_003280 protein_id:17536215; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D228"; intron(phase:11100,position:35,121,189,287,450); exon(number:6,size:34,86,68,98,163,74,sum:523); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(2940990..2941214,2941625..2942113, 2942444..2942736,2943066..2943269,2943315..2943572, 2943957..2944059)) /gene="2D228" /locus_tag="2D228" /codon_start=1 /product="epidermal growth-factor receptor , L domain containing protein precursor (2D228)" /protein_id="17536215" /db_xref="GI:17536215" /db_xref="AceView/WormGenes:2D228" /db_xref="LocusID:188414" // > 3412_NC_003280 protein_id:17532385; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D295"; intron(phase:120,position:92,181,241); exon(number:4,size:91,89,60,91,sum:331); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3003975..3004248,3004548..3004815,3004863..3005040, 3005228..3005503) /gene="2D295" /locus_tag="2D295" /codon_start=1 /evidence=experimental /product="putative protein family member (2D295)" /protein_id="17532385" /db_xref="GI:17532385" /db_xref="AceView/WormGenes:2D295" /db_xref="LocusID:173648" // > 3419_NC_003280 protein_id:17531343; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D325"; intron(phase:21010001,position:87,124,199,261,297,389,509,545); exon(number:9,size:86,37,75,62,36,92,120,36,41,sum:585); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3032777..3033036,3033306..3033415,3033464..3033687, 3034050..3034236,3034287..3034393,3034642..3034917, 3034974..3035333,3035614..3035722,3035777..3035901) /gene="2D325" /locus_tag="2D325" /codon_start=1 /evidence=experimental /product="solute carrier family 7 member (63.9 kD) (2D325)" /protein_id="17531343" /db_xref="GI:17531343" /db_xref="AceView/WormGenes:2D325" /db_xref="LocusID:173650" // > 3438_NC_003280 protein_id:17536985; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D400"; intron(phase:200,position:56,130,169); exon(number:4,size:55,74,39,129,sum:297); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3109486..3109875,3110552..3110668, 3110728..3110947,3111049..3111215)) /gene="2D400" /locus_tag="2D400" /codon_start=1 /evidence=experimental /product="enoyl-CoA hydratase isomerase family (33.0 kD) (2D400)" /protein_id="17536985" /db_xref="GI:17536985" /db_xref="AceView/WormGenes:2D400" /db_xref="LocusID:173657" // > 3444_NC_003280 protein_id:17536197; Caenorhabditis elegans chromosome II, complete sequence. /gene="ins-31"; intron(phase:11,position:110,174); exon(number:3,size:109,64,45,sum:218); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3127034..3127361,3127405..3127596,3127647..3127783) /gene="ins-31" /locus_tag="2D417" /codon_start=1 /evidence=experimental /product="INSulin related (ins-31)" /protein_id="17536197" /db_xref="GI:17536197" /db_xref="AceView/WormGenes:ins-31" /db_xref="LocusID:173660" // > 3477_NC_003280 protein_id:17531919; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D539"; intron(phase:120,position:32,56,83); exon(number:4,size:31,24,27,30,sum:112); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3248685..3248778,3248823..3248895,3248943..3249021, 3249230..3249322) /gene="2D539" /locus_tag="2D539" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (2D539)" /protein_id="17531919" /db_xref="GI:17531919" /db_xref="AceView/WormGenes:2D539" /db_xref="LocusID:173670" // > 3479_NC_003280 protein_id:32563952; Caenorhabditis elegans chromosome II, complete sequence. /gene="gcy-19"; intron(phase:02211100102010202100,position:85,128,224,303,344,358,388,430,476,520,588,712,836,865,942,984,1030,1106,1139,1190); exon(number:21,size:84,43,96,79,41,14,30,42,46,44,68,124,124,29,77,42,46,76,33,51,57,sum:1246); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,ggag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3251076..3251249,3251407..3251559, 3251643..3251740,3252131..3252357,3252417..3252556, 3252810..3252933,3253130..3253362,3253411..3253496, 3253668..3254040,3254110..3254479,3254931..3255136, 3255235..3255365,3255461..3255599,3255660..3255785, 3256301..3256389,3256570..3256611,3257046..3257168, 3257229..3257464,3257511..3257798,3258742..3258872, 3259042..3259293)) /gene="gcy-19" /locus_tag="2D542" /codon_start=1 /evidence=experimental /product="guanylyl cyclase (gcy-19)" /protein_id="32563952" /db_xref="GI:32563952" /db_xref="AceView/WormGenes:gcy-19" /db_xref="LocusID:191650" // > 3500_NC_003280 protein_id:17533191; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D625"; intron(phase:012,position:22,67,112); exon(number:4,size:21,45,45,17,sum:128); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3340382..3340444,3340551..3340686,3340973..3341108, 3341156..3341207) /gene="2D625" /locus_tag="2D625" /codon_start=1 /product="putative protein (2D625)" /protein_id="17533191" /db_xref="GI:17533191" /db_xref="AceView/WormGenes:2D625" /db_xref="LocusID:184456" // > 3505_NC_003280 protein_id:32564762; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D647"; intron(phase:201,position:41,174,223); exon(number:4,size:40,133,49,92,sum:314); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3350252..3350373,3350422..3350818,3350865..3351012, 3358626..3358903) /gene="2D647" /locus_tag="2D647" /codon_start=1 /evidence=experimental /product="Meprin/TRAF-like MATH and BTB/POZ domain containing protein family member (2D647)" /protein_id="32564762" /db_xref="GI:32564762" /db_xref="AceView/WormGenes:2D647" /db_xref="LocusID:184454" // > 3534_NC_003280 protein_id:17531837; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D736"; intron(phase:01,position:19,132); exon(number:3,size:18,113,49,sum:180); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3444721..3444869,3444914..3445253, 3445304..3445357)) /gene="2D736" /locus_tag="2D736" /codon_start=1 /product="ubiquitin domain containing protein (2D736)" /protein_id="17531837" /db_xref="GI:17531837" /db_xref="AceView/WormGenes:2D736" /db_xref="LocusID:182672" // > 3535_NC_003280 protein_id:17531857; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D737"; intron(phase:011001,position:28,242,267,297,469,571); exon(number:7,size:27,214,25,30,172,102,22,sum:592); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3445763..3445843,3445892..3446534,3446581..3446655, 3446942..3447030,3447310..3447825,3448310..3448616, 3448665..3448732) /gene="2D737" /locus_tag="2D737" /codon_start=1 /evidence=experimental /product="laminin like family member (2D737)" /protein_id="17531857" /db_xref="GI:17531857" /db_xref="AceView/WormGenes:2D737" /db_xref="LocusID:173688" // > 3538_NC_003280 protein_id:17531851; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D745"; intron(phase:01,position:28,170); exon(number:3,size:27,142,26,sum:195); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3452724..3452804,3452852..3453278,3453427..3453506) /gene="2D745" /locus_tag="2D745" /codon_start=1 /product="ubiquitin domain containing protein family member (2D745)" /protein_id="17531851" /db_xref="GI:17531851" /db_xref="AceView/WormGenes:2D745" /db_xref="LocusID:182678" // > 3582_NC_003280 protein_id:17537279; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D895"; intron(phase:112002202,position:16,44,115,360,430,534,733,851,914); exon(number:10,size:15,28,71,245,70,104,199,118,63,53,sum:966); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3603379..3603424,3603491..3603574,3603963..3604176, 3604227..3604959,3605116..3605325,3605374..3605687, 3605872..3606468,3606517..3606868,3606928..3607118, 3607217..3607376) /gene="2D895" /locus_tag="2D895" /codon_start=1 /product="eukaryotic initiation factor 2C2 family member (2D895)" /protein_id="17537279" /db_xref="GI:17537279" /db_xref="AceView/WormGenes:2D895" /db_xref="LocusID:190075" // > 3591_NC_003280 protein_id:32564549; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D933"; intron(phase:221111111111,position:42,57,95,140,197,243,261,286,300,324,344,378); exon(number:13,size:41,15,38,45,57,46,18,25,14,24,20,34,68,sum:445); {splice:gtag,ggtc,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3640889..3641013,3641489..3641533,3641582..3641694, 3642194..3642328,3642378..3642548,3642594..3642731, 3642779..3642832,3642882..3642956,3643007..3643048, 3643091..3643162,3643211..3643270,3643516..3643617, 3643666..3643871) /gene="2D933" /locus_tag="2D933" /codon_start=1 /evidence=experimental /product="putative protein family member, with a coiled coil-4 domain (2D933)" /protein_id="32564549" /db_xref="GI:32564549" /db_xref="AceView/WormGenes:2D933" /db_xref="LocusID:173708" // > 3609_NC_003280 protein_id:17533871; Caenorhabditis elegans chromosome II, complete sequence. /gene="2D990"; intron(phase:021102,position:18,69,94,146,178,245); exon(number:7,size:17,51,25,52,32,67,40,sum:284); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3701700..3701820,3701868..3702070, 3702453..3702547,3702659..3702814,3702860..3702933, 3702986..3703140,3703192..3703242)) /gene="2D990" /locus_tag="2D990" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 4 transmembrane domains (2D990)" /protein_id="17533871" /db_xref="GI:17533871" /db_xref="AceView/WormGenes:2D990" /db_xref="LocusID:185585" // > 3620_NC_003280 protein_id:17532419; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E17"; intron(phase:22012,position:40,83,157,206,231); exon(number:6,size:39,43,74,49,25,83,sum:313); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3724252..3724370,3724419..3724547,3725007..3725226, 3725270..3725417,3725468..3725543,3725592..3725841) /gene="2E17" /locus_tag="2E17" /codon_start=1 /product="putative membrane protein (2E17)" /protein_id="17532419" /db_xref="GI:17532419" /db_xref="AceView/WormGenes:2E17" /db_xref="LocusID:183505" // > 3648_NC_003280 protein_id:17534375; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E104"; intron(phase:210,position:27,109,236); exon(number:4,size:26,82,127,74,sum:309); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3814119..3814343,3814445..3814824, 3814966..3815210,3815370..3815449)) /gene="2E104" /locus_tag="2E104" /codon_start=1 /product="cyclin-like F-box and Protein of unknown function DUF38 family member (2E104)" /protein_id="17534375" /db_xref="GI:17534375" /db_xref="AceView/WormGenes:2E104" /db_xref="LocusID:186234" // > 3652_NC_003280 protein_id:17534381; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E118"; intron(phase:121212,position:13,57,123,267,340,384); exon(number:7,size:12,44,66,144,73,44,62,sum:445); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3829575..3829761,3829818..3829950, 3830016..3830233,3830332..3830764,3831360..3831556, 3831602..3831734,3831869..3831905)) /gene="2E118" /locus_tag="2E118" /codon_start=1 /product="predicted CDS, putative protein (2E118)" /protein_id="17534381" /db_xref="GI:17534381" /db_xref="AceView/WormGenes:2E118" /db_xref="LocusID:186236" // > 3663_NC_003280 protein_id:32565393; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E146"; intron(phase:1100100,position:6,98,145,186,187,226,251); exon(number:8,size:5,92,47,41,1,39,25,17,sum:267); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(3863183..3863236,3863282..3863356, 3863423..3863538,3863621..3863624,3863774..3863896, 3864016..3864155,3864300..3864575,3864728..3864743)) /gene="2E146" /locus_tag="2E146" /codon_start=1 /product="c4-type zinc finger nuclear receptor family member (2E146)" /protein_id="32565393" /db_xref="GI:32565393" /db_xref="AceView/WormGenes:2E146" /db_xref="LocusID:183611" // > 3670_NC_003280 protein_id:17532471; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E169"; intron(phase:01001,position:25,61,150,191,274); exon(number:6,size:24,36,89,41,83,90,sum:363); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(3880236..3880307,3880432..3880540,3881032..3881297, 3881340..3881462,3881510..3881759,3881819..3882090) /gene="2E169" /locus_tag="2E169" /codon_start=1 /product="nuclear receptor NHR-51 like family member (2E169)" /protein_id="17532471" /db_xref="GI:17532471" /db_xref="AceView/WormGenes:2E169" /db_xref="LocusID:183605" // > 3699_NC_003280 protein_id:17534941; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E334"; intron(phase:102,position:106,139,164); exon(number:4,size:105,33,25,31,sum:194); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4044763..4044856,4044903..4044979, 4045031..4045128,4045173..4045488)) /gene="2E334" /locus_tag="2E334" /codon_start=1 /product="putative cytoplasmic protein of bilaterial origin (2E334)" /protein_id="17534941" /db_xref="GI:17534941" /db_xref="AceView/WormGenes:2E334" /db_xref="LocusID:187107" // > 3712_NC_003280 protein_id:17535427; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E446"; intron(phase:1,position:33); exon(number:2,size:32,10,sum:42); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4157282..4157313,4157738..4157834)) /gene="2E446" /locus_tag="2E446" /codon_start=1 /product="predicted CDS, putative protein (2E446)" /protein_id="17535427" /db_xref="GI:17535427" /db_xref="AceView/WormGenes:2E446" /db_xref="LocusID:187560" // > 3722_NC_003280 protein_id:17533589; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E501"; intron(phase:212102,position:28,46,79,158,224,281); exon(number:7,size:27,18,33,79,66,57,50,sum:330); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(4209776..4209858,4209946..4209998,4211406..4211505, 4211688..4211923,4212454..4212650,4212697..4212869, 4213177..4213327) /gene="2E501" /locus_tag="2E501" /codon_start=1 /product="predicted CDS, cyclin-like F-box family member (2E501)" /protein_id="17533589" /db_xref="GI:17533589" /db_xref="AceView/WormGenes:2E501" /db_xref="LocusID:185153" // > 3733_NC_003280 protein_id:17531423; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E569"; intron(phase:0202,position:91,158,202,286); exon(number:5,size:90,67,44,84,48,sum:333); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(4276205..4276474,4277432..4277634,4278145..4278274, 4278467..4278720,4278973..4279117) /gene="2E569" /locus_tag="2E569" /codon_start=1 /product="5-hydroxytryptamine receptor 2a like (2E569)" /protein_id="17531423" /db_xref="GI:17531423" /db_xref="AceView/WormGenes:2E569" /db_xref="LocusID:182068" // > 3756_NC_003280 protein_id:17531283; Caenorhabditis elegans chromosome II, complete sequence. /gene="fkh-6"; intron(phase:20200,position:13,50,120,172,274); exon(number:6,size:12,37,70,52,102,50,sum:323); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4379874..4380026,4380216..4380521, 4381179..4381332,4381406..4381617,4382972..4383080, 4383241..4383278)) /gene="fkh-6" /locus_tag="2E670" /codon_start=1 /product="ForKHead transcription factor family member (fkh-6)" /protein_id="17531283" /db_xref="GI:17531283" /db_xref="AceView/WormGenes:fkh-6" /db_xref="LocusID:181907" // > 3765_NC_003280 protein_id:17535317; Caenorhabditis elegans chromosome II, complete sequence. /gene="nhr-16"; intron(phase:2102,position:32,61,204,265); exon(number:5,size:31,29,143,61,124,sum:388); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(4438900..4438994,4439044..4439129,4439363..4439790, 4439840..4440024,4440441..4440813) /gene="nhr-16" /locus_tag="2E729" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (44.5 kD) (nhr-16)" /protein_id="17535317" /db_xref="GI:17535317" /db_xref="AceView/WormGenes:nhr-16" /db_xref="LocusID:173781" // > 3782_NC_003280 protein_id:32565411; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E828"; intron(phase:12220,position:69,90,147,181,245); exon(number:6,size:68,21,57,34,64,64,sum:308); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4538973..4539167,4539431..4539620, 4539678..4539779,4539825..4539995,4540317..4540380, 4540512..4540716)) /gene="2E828" /locus_tag="2E828" /codon_start=1 /product="nematode chemoreceptor, Sra family (2E828)" /protein_id="32565411" /db_xref="GI:32565411" /db_xref="AceView/WormGenes:2E828" /db_xref="LocusID:181921" // > 3783_NC_003280 protein_id:32565849; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E830"; intron(phase:0020,position:46,83,148,211); exon(number:5,size:45,37,65,63,73,sum:283); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4541850..4542071,4542117..4542303, 4542744..4542940,4543354..4543464,4543519..4543653)) /gene="2E830" /locus_tag="2E830" /codon_start=1 /product="nematode chemoreceptor, Sra family (2E830)" /protein_id="32565849" /db_xref="GI:32565849" /db_xref="AceView/WormGenes:2E830" /db_xref="LocusID:353393" // > 3793_NC_003280 protein_id:32564271; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E906"; intron(phase:012,position:44,81,167); exon(number:4,size:43,37,86,63,sum:229); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4615662..4615851,4615908..4616166, 4616224..4616335,4616390..4616518)) /gene="2E906" /locus_tag="2E906" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein family member precursor (2E906)" /protein_id="32564271" /db_xref="GI:32564271" /db_xref="AceView/WormGenes:2E906" /db_xref="LocusID:173799" // > 3804_NC_003280 protein_id:17535977; Caenorhabditis elegans chromosome II, complete sequence. /gene="2E969"; intron(phase:01200,position:25,65,148,177,204); exon(number:6,size:24,40,83,29,27,39,sum:242); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(4678011..4678082,4678203..4678323,4678383..4678632, 4679131..4679215,4679265..4679345,4679394..4679513) /gene="2E969" /locus_tag="2E969" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (2E969)" /protein_id="17535977" /db_xref="GI:17535977" /db_xref="AceView/WormGenes:2E969" /db_xref="LocusID:188081" // > 3835_NC_003280 protein_id:17532279; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F87"; intron(phase:0021,position:51,194,239,344); exon(number:5,size:50,143,45,105,115,sum:458); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(4795798..4795947,4796263..4796691,4796737..4796873, 4797356..4797669,4797720..4798066) /gene="2F87" /locus_tag="2F87" /codon_start=1 /evidence=experimental /product="tat-interacting protein (2F87)" /protein_id="17532279" /db_xref="GI:17532279" /db_xref="AceView/WormGenes:2F87" /db_xref="LocusID:173827" // > 3858_NC_003280 protein_id:17535445; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F190"; intron(phase:00001,position:26,54,112,176,238); exon(number:6,size:25,28,58,64,62,19,sum:256); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4900215..4900273,4900656..4900842, 4901105..4901296,4901616..4901789,4901873..4901956, 4902008..4902082)) /gene="2F190" /locus_tag="2F190" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (2F190)" /protein_id="17535445" /db_xref="GI:17535445" /db_xref="AceView/WormGenes:2F190" /db_xref="LocusID:173845" // > 3861_NC_003280 protein_id:17535449; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F202"; intron(phase:200000,position:34,63,140,227,310,416); exon(number:7,size:33,29,77,87,83,106,106,sum:521); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(4911851..4912171,4912215..4912532, 4912774..4913022,4913321..4913581,4913689..4913919, 4913968..4914052,4914098..4914198)) /gene="2F202" /locus_tag="2F202" /codon_start=1 /product="putative nuclear protein family member (2F202)" /protein_id="17535449" /db_xref="GI:17535449" /db_xref="AceView/WormGenes:2F202" /db_xref="LocusID:187618" // > 3906_NC_003280 protein_id:17534487; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F424"; intron(phase:1000210021,position:67,98,132,176,200,243,296,321,361,399); exon(number:11,size:66,31,34,44,24,43,53,25,40,38,41,sum:439); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5138675..5138799,5138843..5138955, 5139341..5139462,5139513..5139587,5139639..5139796, 5139855..5139982,5140029..5140102,5140242..5140373, 5140423..5140524,5140572..5140663,5140808..5141006)) /gene="2F424" /locus_tag="2F424" /codon_start=1 /product="metalloprotease III (2F424)" /protein_id="17534487" /db_xref="GI:17534487" /db_xref="AceView/WormGenes:2F424" /db_xref="LocusID:186488" // > 3944_NC_003280 protein_id:17533029; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F638"; intron(phase:211222000110,position:29,78,191,215,252,283,324,366,453,477,527,555); exon(number:13,size:28,49,113,24,37,31,41,42,87,24,50,28,31,sum:585); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5348063..5348158,5348264..5348346, 5348392..5348541,5348596..5348668,5348717..5348977, 5349023..5349148,5349193..5349313,5349365..5349457, 5349510..5349620,5349663..5349735,5349786..5350124, 5350171..5350316,5350428..5350513)) /gene="2F638" /locus_tag="2F638" /codon_start=1 /evidence=experimental /product="putative protein of eukaryotic origin (2F638)" /protein_id="17533029" /db_xref="GI:17533029" /db_xref="AceView/WormGenes:2F638" /db_xref="LocusID:173905" // > 3952_NC_003280 protein_id:17533033; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F656"; intron(phase:010,position:31,125,163); exon(number:4,size:30,94,38,150,sum:312); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5367909..5368361,5368415..5368527, 5368579..5368861,5368978..5369067)) /gene="2F656" /locus_tag="2F656" /codon_start=1 /product="predicted CDS, putative nuclear protein (2F656)" /protein_id="17533033" /db_xref="GI:17533033" /db_xref="AceView/WormGenes:2F656" /db_xref="LocusID:184243" // > 3961_NC_003280 protein_id:17532837; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F682"; intron(phase:0100000,position:70,121,208,241,389,532,566); exon(number:8,size:69,51,87,33,148,143,34,25,sum:590); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5390404..5390481,5390527..5390628, 5390679..5391107,5391785..5392228,5392291..5392389, 5392437..5392696,5392744..5392897,5392947..5393153)) /gene="2F682" /locus_tag="2F682" /codon_start=1 /evidence=experimental /product="RING and Zn-finger in ubiquitin peptidase containing protein, similar to BRCA1 associated protein BRAP2 (67.4 kD) (2F682)" /protein_id="17532837" /db_xref="GI:17532837" /db_xref="AceView/WormGenes:2F682" /db_xref="LocusID:173917" // > 3978_NC_003280 protein_id:25154037; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F722"; intron(phase:0210102,position:4,57,82,114,133,188,254); exon(number:8,size:3,53,25,32,19,55,66,58,sum:311); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5431443..5431617,5431822..5432021, 5432065..5432228,5432279..5432336,5432438..5432532, 5432588..5432661,5432725..5432885,5433084..5433092)) /gene="2F722" /locus_tag="2F722" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 2 transmembrane domains (2F722)" /protein_id="25154037" /db_xref="GI:25154037" /db_xref="AceView/WormGenes:2F722" /db_xref="LocusID:259893" // > 3983_NC_003280 protein_id:17532725; Caenorhabditis elegans chromosome II, complete sequence. /gene="dhs-5"; intron(phase:2110,position:60,134,170,278); exon(number:5,size:59,74,36,108,101,sum:378); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(5453814..5453992,5454298..5454518,5454568..5454675, 5455070..5455392,5455447..5455752) /gene="dhs-5" /locus_tag="2F745" /codon_start=1 /evidence=experimental /product="DeHydrogenase, Short chain (42.1 kD) (dhs-5)" /protein_id="17532725" /db_xref="GI:17532725" /db_xref="AceView/WormGenes:dhs-5" /db_xref="LocusID:173930" // > 3994_NC_003280 protein_id:32565450; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F786"; intron(phase:1000202,position:30,44,72,236,282,340,416); exon(number:8,size:29,14,28,164,46,58,76,22,sum:437); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5499191..5499257,5499304..5499533, 5499584..5499755,5499801..5499940,5499996..5500487, 5500537..5500620,5500824..5500864,5500911..5500998)) /gene="2F786" /locus_tag="2F786" /codon_start=1 /evidence=experimental /product="putative protein (50.3 kD) (2F786)" /protein_id="32565450" /db_xref="GI:32565450" /db_xref="AceView/WormGenes:2F786" /db_xref="LocusID:184376" // > 3998_NC_003280 protein_id:17537821; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F805"; intron(phase:0000,position:41,85,108,132); exon(number:5,size:40,44,23,24,75,sum:206); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(5515828..5515947,5516250..5516381,5516422..5516490, 5516541..5516612,5516873..5517100) /gene="2F805" /locus_tag="2F805" /codon_start=1 /product="ikaros (2F805)" /protein_id="17537821" /db_xref="GI:17537821" /db_xref="AceView/WormGenes:2F805" /db_xref="LocusID:191237" // > 4009_NC_003280 protein_id:17531897; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F841"; intron(phase:2,position:56); exon(number:2,size:55,91,sum:146); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(5550013..5550179,5550224..5550497) /gene="2F841" /locus_tag="2F841" /codon_start=1 /product="predicted CDS, cyclin-like F-box family member (2F841)" /protein_id="17531897" /db_xref="GI:17531897" /db_xref="AceView/WormGenes:2F841" /db_xref="LocusID:182716" // > 4020_NC_003280 protein_id:32563695; Caenorhabditis elegans chromosome II, complete sequence. /gene="cdc-14"; intron(phase:00000,position:20,85,121,542,606); exon(number:6,size:19,65,36,421,64,76,sum:681); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5590348..5590578,5590760..5590951, 5591542..5592804,5592875..5592982,5593032..5593226, 5593284..5593340)) /gene="cdc-14" /locus_tag="2F878" /codon_start=1 /evidence=experimental /product="cell Division Cycle related, protein phosphatase CDC14 (76.7 kD) (cdc-14)" /protein_id="32563695" /db_xref="GI:32563695" /db_xref="AceView/WormGenes:cdc-14" /db_xref="LocusID:173945" // > 4045_NC_003280 protein_id:32565865; Caenorhabditis elegans chromosome II, complete sequence. /gene="2F983b"; intron(phase:20,position:92,121); exon(number:3,size:91,29,28,sum:148); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(5694170..5694444,5694490..5694574,5694617..5694703) /gene="2F983b" /locus_tag="2F983b" /codon_start=1 /product="predicted CDS, thioesterase superfamily (2F983b)" /protein_id="32565865" /db_xref="GI:32565865" /db_xref="AceView/WormGenes:2F983b" /db_xref="LocusID:353396" // > 4055_NC_003280 protein_id:17531953; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G11"; intron(phase:21222,position:102,182,204,305,330); exon(number:6,size:101,80,22,101,25,36,sum:365); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(5720125..5720429,5720483..5720721,5720769..5720835, 5720884..5721186,5721506..5721580,5721629..5721737) /gene="2G11" /locus_tag="2G11" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein of ancient origin (42.2 kD) (2G11)" /protein_id="17531953" /db_xref="GI:17531953" /db_xref="AceView/WormGenes:2G11" /db_xref="LocusID:173970" // > 4073_NC_003280 protein_id:17538085; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G104"; intron(phase:0,position:65); exon(number:2,size:64,12,sum:76); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(5813863..5813901,5813948..5814139)) /gene="2G104" /locus_tag="2G104" /codon_start=1 /product="putative protein family member (2G104)" /protein_id="17538085" /db_xref="GI:17538085" /db_xref="AceView/WormGenes:2G104" /db_xref="LocusID:191546" // > 4110_NC_003280 protein_id:17534779; Caenorhabditis elegans chromosome II, complete sequence. /gene="ins-5"; intron(phase:1,position:63); exon(number:2,size:62,28,sum:90); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(5998438..5998624,5998703..5998788) /gene="ins-5" /locus_tag="2G285" /codon_start=1 /product="INSulin related (ins-5)" /protein_id="17534779" /db_xref="GI:17534779" /db_xref="AceView/WormGenes:ins-5" /db_xref="LocusID:191686" // > 4112_NC_003280 protein_id:17537807; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G294"; intron(phase:1,position:20); exon(number:2,size:19,53,sum:72); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6008410..6008570,6008657..6008714)) /gene="2G294" /locus_tag="2G294" /codon_start=1 /product="predicted CDS, putative protein family member (2G294)" /protein_id="17537807" /db_xref="GI:17537807" /db_xref="AceView/WormGenes:2G294" /db_xref="LocusID:191218" // > 4120_NC_003280 protein_id:17535607; Caenorhabditis elegans chromosome II, complete sequence. /gene="ran-5"; intron(phase:100010,position:23,61,113,158,196,227); exon(number:7,size:22,38,52,45,38,31,114,sum:340); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6048062..6048128,6048178..6048290,6048340..6048495, 6048544..6048678,6048726..6048840,6048887..6048978, 6049028..6049372) /gene="ran-5" /locus_tag="2G339" /codon_start=1 /evidence=experimental /product="RAN (nuclear import/export) related (37.5 kD) (ran-5)" /protein_id="17535607" /db_xref="GI:17535607" /db_xref="AceView/WormGenes:ran-5" /db_xref="LocusID:174011" // > 4122_NC_003280 protein_id:17535617; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G344"; intron(phase:01112,position:23,68,113,139,180); exon(number:6,size:22,45,45,26,41,55,sum:234); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6055106..6055271,6055319..6055442, 6055494..6055571,6055615..6055749,6055801..6055936, 6056298..6056363)) /gene="2G344" /locus_tag="2G344" /codon_start=1 /product="putative protein family member, with a coiled coil-4 domain (2G344)" /protein_id="17535617" /db_xref="GI:17535617" /db_xref="AceView/WormGenes:2G344" /db_xref="LocusID:187841" // > 4165_NC_003280 protein_id:17533163; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G563"; intron(phase:012020021,position:53,93,163,255,321,472,687,847,929); exon(number:10,size:52,40,70,92,66,151,215,160,82,1,sum:929); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6270316..6270471,6270515..6270635,6270681..6270891, 6270940..6271213,6271258..6271457,6271503..6271953, 6272000..6272644,6272697..6273178,6273225..6273469, 6273667..6273671) /gene="2G563" /locus_tag="2G563" /codon_start=1 /evidence=experimental /product="transducin protein (103.2 kD) (2G563)" /protein_id="17533163" /db_xref="GI:17533163" /db_xref="AceView/WormGenes:2G563" /db_xref="LocusID:174038" // > 4167_NC_003280 protein_id:17533177; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G570"; intron(phase:1202,position:63,188,229,266); exon(number:5,size:62,125,41,37,63,sum:328); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6279680..6279869,6279913..6280025, 6280071..6280191,6280239..6280614,6280662..6280848)) /gene="2G570" /locus_tag="2G570" /codon_start=1 /product="cysteine desulfurase (2G570)" /protein_id="17533177" /db_xref="GI:17533177" /db_xref="AceView/WormGenes:2G570" /db_xref="LocusID:184440" // > 4205_NC_003280 protein_id:32565480; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G733"; intron(phase:100201,position:29,63,88,135,263,427); exon(number:7,size:28,34,25,47,128,164,62,sum:488); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6441372..6441456,6441532..6441632,6441736..6441810, 6441930..6442072,6442170..6442551,6442599..6443091, 6443354..6443541) /gene="2G733" /locus_tag="2G733" /codon_start=1 /evidence=experimental /product="Endoglin/CD105 antigen family member (53.5 kD) (2G733)" /protein_id="32565480" /db_xref="GI:32565480" /db_xref="AceView/WormGenes:2G733" /db_xref="LocusID:174065" // > 4218_NC_003280 protein_id:17536565; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G783"; intron(phase:200,position:41,83,115); exon(number:4,size:40,42,32,15,sum:129); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6492349..6492470,6492861..6492984,6493033..6493128, 6493334..6493381) /gene="2G783" /locus_tag="2G783" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil domain (13.7 kD) (2G783)" /protein_id="17536565" /db_xref="GI:17536565" /db_xref="AceView/WormGenes:2G783" /db_xref="LocusID:174074" // > 4235_NC_003280 protein_id:32565490; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G859"; intron(phase:020210,position:89,137,163,228,270,294); exon(number:7,size:88,48,26,65,42,24,51,sum:344); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6568955..6569218,6569270..6569415,6569503..6569578, 6569679..6569875,6569924..6570048,6570108..6570178, 6570220..6570375) /gene="2G859" /locus_tag="2G859" /codon_start=1 /product="nematode chemoreceptor, Sra family (2G859)" /protein_id="32565490" /db_xref="GI:32565490" /db_xref="AceView/WormGenes:2G859" /db_xref="LocusID:184633" // > 4243_NC_003280 protein_id:17532573; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G878"; intron(phase:0011,position:26,64,100,143); exon(number:5,size:25,38,36,43,19,sum:161); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6587908..6587966,6588016..6588144, 6588194..6588302,6588349..6588462,6588507..6588581)) /gene="2G878" /locus_tag="2G878" /codon_start=1 /evidence=experimental /product="transcription factor btf3 (17.5 kD) (2G878)" /protein_id="17532573" /db_xref="GI:17532573" /db_xref="AceView/WormGenes:2G878" /db_xref="LocusID:174090" // > 4266_NC_003280 protein_id:17532007; Caenorhabditis elegans chromosome II, complete sequence. /gene="2G981"; intron(phase:201110,position:19,52,108,187,425,821); exon(number:7,size:18,33,56,79,238,396,98,sum:918); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6684188..6684243,6684644..6684740,6685727..6685895, 6685969..6686205,6686287..6687000,6687047..6688233, 6688283..6688579) /gene="2G981" /locus_tag="2G981" /codon_start=1 /evidence=experimental /product="CD2-binding protein, GYF (2G981)" /protein_id="17532007" /db_xref="GI:17532007" /db_xref="AceView/WormGenes:2G981" /db_xref="LocusID:174103" // > 4277_NC_003280 protein_id:17536279; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H20"; intron(phase:01010,position:63,166,202,252,300); exon(number:6,size:62,103,36,50,48,68,sum:367); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6732331..6732537,6732622..6732764, 6732811..6732961,6733008..6733114,6733162..6733471, 6733530..6733715)) /gene="2H20" /locus_tag="2H20" /codon_start=1 /product="glycosyl transferase, family 14 (2H20)" /protein_id="17536279" /db_xref="GI:17536279" /db_xref="AceView/WormGenes:2H20" /db_xref="LocusID:188494" // > 4279_NC_003280 protein_id:17536269; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H27"; intron(phase:00,position:73,104); exon(number:3,size:72,31,36,sum:139); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6736136..6736351,6736403..6736495,6736543..6736653) /gene="2H27" /locus_tag="2H27" /codon_start=1 /evidence=experimental /product="mitochondrial ribosomal protein S18a (15.8 kD) (2H27)" /protein_id="17536269" /db_xref="GI:17536269" /db_xref="AceView/WormGenes:2H27" /db_xref="LocusID:188492" // > 4284_NC_003280 protein_id:32565512; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H40"; intron(phase:011,position:24,87,140); exon(number:4,size:23,63,53,59,sum:198); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6748621..6748799,6748844..6749002, 6749053..6749242,6749289..6749357)) /gene="2H40" /locus_tag="2H40" /codon_start=1 /evidence=experimental /product="metridin-like ShK toxin family member (21.5 kD) (2H40)" /protein_id="32565512" /db_xref="GI:32565512" /db_xref="AceView/WormGenes:2H40" /db_xref="LocusID:185632" // > 4286_NC_003280 protein_id:17533899; Caenorhabditis elegans chromosome II, complete sequence. /gene="fis-1"; intron(phase:010,position:18,54,81); exon(number:4,size:17,36,27,63,sum:143); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6755111..6755161,6755203..6755311,6755359..6755438, 6755624..6755815) /gene="fis-1" /locus_tag="2H45" /codon_start=1 /product="predicted CDS, related to yeast Fis1p, a gene involved in mitochondrial division (fis-1)" /protein_id="17533899" /db_xref="GI:17533899" /db_xref="AceView/WormGenes:fis-1" /db_xref="LocusID:185630" // > 4299_NC_003280 protein_id:17533591; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H117"; intron(phase:2,position:122); exon(number:2,size:121,128,sum:249); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(6828043..6828407,6829996..6830380) /gene="2H117" /locus_tag="2H117" /codon_start=1 /product="predicted CDS, putative endoplasmic reticulum protein, with a transmembrane domain (2H117)" /protein_id="17533591" /db_xref="GI:17533591" /db_xref="AceView/WormGenes:2H117" /db_xref="LocusID:185155" // > 4306_NC_003280 protein_id:25149797; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H166"; intron(phase:0202200121,position:32,77,108,137,168,197,252,305,348,411); exon(number:11,size:31,45,31,29,31,29,55,53,43,63,79,sum:489); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6872832..6873070,6873200..6873387, 6873434..6873563,6874763..6874922,6874975..6875139, 6875220..6875304,6875353..6875445,6875494..6875582, 6875630..6875720,6876544..6876680,6876886..6876978)) /gene="2H166" /locus_tag="2H166" /codon_start=1 /evidence=experimental /product="amino acid transporter family member (54.4 kD) (2H166)" /protein_id="25149797" /db_xref="GI:25149797" /db_xref="AceView/WormGenes:2H166" /db_xref="LocusID:174125" // > 4309_NC_003280 protein_id:17532411; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H174"; intron(phase:22200201,position:41,115,171,213,254,313,583,609); exon(number:9,size:40,74,56,42,41,59,270,26,53,sum:661); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(6884041..6884201,6884828..6884906, 6884954..6885761,6885813..6885991,6886038..6886160, 6886407..6886530,6886580..6886747,6886808..6887029, 6887509..6887630)) /gene="2H174" /locus_tag="2H174" /codon_start=1 /evidence=experimental /product="ATP-binding cassette sub-family D member 3 like (74.9 kD) (2H174)" /protein_id="17532411" /db_xref="GI:17532411" /db_xref="AceView/WormGenes:2H174" /db_xref="LocusID:174127" // > 4335_NC_003280 protein_id:25149834; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H304"; intron(phase:0012010101122101122,position:29,82,169,198,257,468,533,774,827,859,992,1049,1092,1133,1179,1300,1371,1402,1428); exon(number:20,size:28,53,87,29,59,211,65,241,53,32,133,57,43,41,46,121,71,31,26,60,sum:1487); {splice:gtag,gtag,gtag,gtag,gcag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(7013139..7013319,7014154..7014231, 7014435..7014528,7014576..7014788,7014839..7015202, 7015261..7015397,7015452..7015573,7015630..7015758, 7016134..7016305,7016600..7016998,7017383..7017479, 7017531..7017688,7017740..7018463,7018541..7018734, 7018880..7019513,7019559..7019733,7020079..7020166, 7021533..7021794,7021842..7022000,7022352..7022435)) /gene="2H304" /locus_tag="2H304" /codon_start=1 /evidence=experimental /product="uDENN domain and DENN domain and dDENN domain and RUN domain and Lipoxygenase, LH2 domain containing protein (2H304)" /protein_id="25149834" /db_xref="GI:25149834" /db_xref="AceView/WormGenes:2H304" /db_xref="LocusID:174146" // > 4375_NC_003280 protein_id:17536107; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H437"; intron(phase:121102212,position:17,54,99,229,272,296,332,346,366); exon(number:10,size:16,37,45,130,43,24,36,14,20,18,sum:383); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(7143987..7144035,7144540..7144651,7144700..7144833, 7144887..7145276,7145693..7145820,7146044..7146117, 7146166..7146273,7148053..7148093,7148219..7148279, 7148326..7148380) /gene="2H437" /locus_tag="2H437" /codon_start=1 /product="somatostatin receptor (2H437)" /protein_id="17536107" /db_xref="GI:17536107" /db_xref="AceView/WormGenes:2H437" /db_xref="LocusID:188235" // > 4380_NC_003280 protein_id:17532623; Caenorhabditis elegans chromosome II, complete sequence. /gene="col-36"; intron(phase:2,position:31); exon(number:2,size:30,277,sum:307); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(7167602..7168433,7168482..7168573)) /gene="col-36" /locus_tag="2H458" /codon_start=1 /evidence=experimental /product="COLlagen structural gene (col-36)" /protein_id="17532623" /db_xref="GI:17532623" /db_xref="AceView/WormGenes:col-36" /db_xref="LocusID:174178" // > 4383_NC_003280 protein_id:17535359; Caenorhabditis elegans chromosome II, complete sequence. /gene="pdl-1"; intron(phase:112,position:56,98,133); exon(number:4,size:55,42,35,27,sum:159); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(7183751..7183916,7184202..7184327,7184428..7184533, 7185004..7185085) /gene="pdl-1" /locus_tag="2H473" /codon_start=1 /product="phosphodiesterase DeLta like (pdl-1)" /protein_id="17535359" /db_xref="GI:17535359" /db_xref="AceView/WormGenes:pdl-1" /db_xref="LocusID:191741" // > 4449_NC_003280 protein_id:17535863; Caenorhabditis elegans chromosome II, complete sequence. /gene="sro-1"; intron(phase:112220,position:27,59,85,118,364,420); exon(number:7,size:26,32,26,33,246,56,55,sum:474); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(7460034..7460201,7460367..7460532, 7460714..7461451,7461874..7461972,7462521..7462599, 7463049..7463144,7463460..7463538)) /gene="sro-1" /locus_tag="2H750" /codon_start=1 /product="serpentine Receptor, class O, opsin like (sro-1)" /protein_id="17535863" /db_xref="GI:17535863" /db_xref="AceView/WormGenes:sro-1" /db_xref="LocusID:191958" // > 4467_NC_003280 protein_id:32564907; Caenorhabditis elegans chromosome II, complete sequence. /gene="2H827"; intron(phase:010210,position:25,56,95,127,155,201); exon(number:7,size:24,31,39,32,28,46,84,sum:284); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(7535102..7535173,7535224..7535317,7535761..7535876, 7535925..7536022,7536072..7536154,7536203..7536339, 7536591..7536845) /gene="2H827" /locus_tag="2H827" /codon_start=1 /evidence=experimental /product="putative endoplasmic reticulum protein, with at least 3 transmembrane domains (32.1 kD) (2H827)" /protein_id="32564907" /db_xref="GI:32564907" /db_xref="AceView/WormGenes:2H827" /db_xref="LocusID:259447" // > 4485_NC_003280 protein_id:17532607; Caenorhabditis elegans chromosome II, complete sequence. /gene="cdc-42"; intron(phase:000,position:42,97,163); exon(number:4,size:41,55,66,29,sum:191); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(7616375..7616497,7616551..7616715,7616766..7616963, 7617310..7617399) /gene="cdc-42" /locus_tag="2H907" /codon_start=1 /evidence=experimental /product="cell Division Cycle related, Rho GTPase cdc42 (21.2 kD) (cdc-42)" /protein_id="17532607" /db_xref="GI:17532607" /db_xref="AceView/WormGenes:cdc-42" /db_xref="LocusID:174233" // > 4600_NC_003280 protein_id:17535211; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I511"; intron(phase:12200120,position:17,44,83,448,516,838,1028,1104); exon(number:9,size:16,27,39,365,68,322,190,76,53,sum:1156); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8217172..8217220,8217275..8217356,8217401..8217517, 8217663..8218755,8218810..8219013,8219065..8220031, 8220085..8220655,8220702..8220927,8220999..8221160) /gene="2I511" /locus_tag="2I511" /codon_start=1 /evidence=experimental /product="initiation factor (129.3 kD) (2I511)" /protein_id="17535211" /db_xref="GI:17535211" /db_xref="AceView/WormGenes:2I511" /db_xref="LocusID:174322" // > 4614_NC_003280 protein_id:17534667; Caenorhabditis elegans chromosome II, complete sequence. /gene="gei-14"; intron(phase:1201,position:215,262,306,539); exon(number:5,size:214,47,44,233,46,sum:584); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(8273581..8273720,8273765..8274464, 8274512..8274641,8274690..8274831,8274879..8275521)) /gene="gei-14" /locus_tag="2I564" /codon_start=1 /evidence=experimental /product="GEX (Gut on EXterior) Interacting protein GEI-14, putative nuclear protein, with a coiled coil-4 domain (gei-14)" /protein_id="17534667" /db_xref="GI:17534667" /db_xref="AceView/WormGenes:gei-14" /db_xref="LocusID:174328" // > 4617_NC_003280 protein_id:17534825; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I573"; intron(phase:101222,position:20,39,77,142,217,332); exon(number:7,size:19,19,38,65,75,115,221,sum:552); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8278603..8278660,8278702..8278757,8278805..8278919, 8279348..8279543,8279593..8279817,8279863..8280207, 8280289..8280952) /gene="2I573" /locus_tag="2I573" /codon_start=1 /product="predicted CDS, putative secreted or extracellular protein precursor, with a coiled coil-4 domain (2I573)" /protein_id="17534825" /db_xref="GI:17534825" /db_xref="AceView/WormGenes:2I573" /db_xref="LocusID:186842" // > 4624_NC_003280 protein_id:17532083; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I623"; intron(phase:2000100022102201,position:26,80,162,319,373,539,594,712,849,912,966,1029,1108,1209,1259,1305); exon(number:17,size:25,54,82,157,54,166,55,118,137,63,54,63,79,101,50,46,205,sum:1509); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8329197..8329273,8329321..8329480,8329749..8329994, 8330525..8330995,8331042..8331204,8331504..8332000, 8332121..8332285,8332334..8332687,8332732..8333144, 8333191..8333379,8334007..8334167,8334532..8334719, 8334777..8335015,8335065..8335367,8335416..8335563, 8335617..8335755,8335804..8336420) /gene="2I623" /locus_tag="2I623" /codon_start=1 /evidence=experimental /product="GHMP kinase family member (2I623)" /protein_id="17532083" /db_xref="GI:17532083" /db_xref="AceView/WormGenes:2I623" /db_xref="LocusID:182938" // > 4639_NC_003280 protein_id:17534217; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I705"; intron(phase:0110022,position:31,75,133,177,277,453,590); exon(number:8,size:30,44,58,44,100,176,137,68,sum:657); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8412615..8412704,8412750..8412882,8413157..8413330, 8413427..8413557,8413625..8413924,8414030..8414559, 8414613..8415023,8415333..8415537) /gene="2I705" /locus_tag="2I705" /codon_start=1 /evidence=experimental /product="DNA segment Chr 10 ERATO Doi 739 expressed like (2I705)" /protein_id="17534217" /db_xref="GI:17534217" /db_xref="AceView/WormGenes:2I705" /db_xref="LocusID:174341" // > 4652_NC_003280 protein_id:17538165; Caenorhabditis elegans chromosome II, complete sequence. /gene="zyg-9"; intron(phase:000001002,position:65,351,544,573,624,775,891,1062,1371); exon(number:10,size:64,286,193,29,51,151,116,171,309,45,sum:1415); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8457737..8457928,8457975..8458832,8458880..8459458, 8460961..8461047,8461147..8461299,8461349..8461802, 8461850..8462196,8462395..8462907,8463025..8463953, 8464030..8464165) /gene="zyg-9" /locus_tag="2I753" /codon_start=1 /evidence=experimental /product="component of the meiotic and mitotic spindle poles, ZYGote defective : embryonic lethal ZYG-9 (156.2 kD) (zyg-9)" /protein_id="17538165" /db_xref="GI:17538165" /db_xref="AceView/WormGenes:zyg-9" /db_xref="LocusID:174350" // > 4663_NC_003280 protein_id:17536253; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I805"; intron(phase:1202,position:63,158,201,286); exon(number:5,size:62,95,43,85,123,sum:408); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8514970..8515156,8515266..8515551,8515777..8515903, 8515953..8516209,8516258..8516627) /gene="2I805" /locus_tag="2I805" /codon_start=1 /evidence=experimental /product="sec14 -like 2 (2I805)" /protein_id="17536253" /db_xref="GI:17536253" /db_xref="AceView/WormGenes:2I805" /db_xref="LocusID:174360" // > 4671_NC_003280 protein_id:17536647; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I829"; intron(phase:1100002,position:30,64,101,125,230,273,536); exon(number:8,size:29,34,37,24,105,43,263,29,sum:564); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8536276..8536363,8536410..8536511,8536556..8536665, 8536724..8536795,8536942..8537256,8537303..8537431, 8537504..8538294,8538339..8538426) /gene="2I829" /locus_tag="2I829" /codon_start=1 /product="predicted CDS, putative nuclear protein (2I829)" /protein_id="17536647" /db_xref="GI:17536647" /db_xref="AceView/WormGenes:2I829" /db_xref="LocusID:189089" // > 4678_NC_003280 protein_id:17534333; Caenorhabditis elegans chromosome II, complete sequence. /gene="rpl-5"; intron(phase:000,position:64,125,238); exon(number:4,size:63,61,113,56,sum:293); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8569849..8570037,8570090..8570272,8570318..8570656, 8570705..8570875) /gene="rpl-5" /locus_tag="2I861" /codon_start=1 /evidence=experimental /product="ribosomal Protein, Large subunit (33.4 kD) (rpl-5)" /protein_id="17534333" /db_xref="GI:17534333" /db_xref="AceView/WormGenes:rpl-5" /db_xref="LocusID:174371" // > 4688_NC_003280 protein_id:17533539; Caenorhabditis elegans chromosome II, complete sequence. /gene="2I891"; intron(phase:21,position:75,172); exon(number:3,size:74,97,48,sum:219); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8599595..8599818,8599874..8600163,8600211..8600356) /gene="2I891" /locus_tag="2I891" /codon_start=1 /product="putative cytoplasmic protein (2I891)" /protein_id="17533539" /db_xref="GI:17533539" /db_xref="AceView/WormGenes:2I891" /db_xref="LocusID:185048" // > 4717_NC_003280 protein_id:17535871; Caenorhabditis elegans chromosome II, complete sequence. /gene="rab-21"; intron(phase:001,position:47,103,172); exon(number:4,size:46,56,69,36,sum:207); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(8714068..8714177,8714244..8714451, 8714497..8714664,8714788..8714925)) /gene="rab-21" /locus_tag="2J2" /codon_start=1 /product="RAB family member (rab-21)" /protein_id="17535871" /db_xref="GI:17535871" /db_xref="AceView/WormGenes:rab-21" /db_xref="LocusID:187932" // > 4725_NC_003280 protein_id:32563976; Caenorhabditis elegans chromosome II, complete sequence. /gene="fut-1"; intron(phase:201000202,position:12,36,115,178,225,260,289,325,364); exon(number:10,size:11,24,79,63,47,35,29,36,39,70,sum:433); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(8756490..8756700,8756788..8756906, 8756955..8757060,8757112..8757200,8757248..8757352, 8757438..8757578,8757628..8757815,8757884..8758121, 8758169..8758238,8758495..8758529)) /gene="fut-1" /locus_tag="2J48" /codon_start=1 /evidence=experimental /product="FUcosyl Transferase (50.0 kD) (fut-1)" /protein_id="32563976" /db_xref="GI:32563976" /db_xref="AceView/WormGenes:fut-1" /db_xref="LocusID:174400" // > 4731_NC_003280 protein_id:17532955; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J81"; intron(phase:0,position:10); exon(number:2,size:9,36,sum:45); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(8790610..8790636,8790714..8790824) /gene="2J81" /locus_tag="2J81" /codon_start=1 /evidence=experimental /product="putative mitochondrial protein (5.3 kD) (2J81)" /protein_id="17532955" /db_xref="GI:17532955" /db_xref="AceView/WormGenes:2J81" /db_xref="LocusID:174406" // > 4771_NC_003280 protein_id:17531993; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J262"; intron(phase:001212,position:53,78,106,131,208,261); exon(number:7,size:52,25,28,25,77,53,41,sum:301); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(8972277..8972400,8972454..8972613, 8972665..8972894,8972939..8973014,8973062..8973146, 8973191..8973265,8973313..8973468)) /gene="2J262" /locus_tag="2J262" /codon_start=1 /evidence=experimental /product="haymaker protein (32.4 kD) (2J262)" /protein_id="17531993" /db_xref="GI:17531993" /db_xref="AceView/WormGenes:2J262" /db_xref="LocusID:174431" // > 4810_NC_003280 protein_id:17536423; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J458"; intron(phase:00000222,position:34,56,90,121,156,185,280,320); exon(number:9,size:33,22,34,31,35,29,95,40,135,sum:454); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(9167945..9168350,9168406..9168525, 9168572..9168856,9168909..9168997,9169048..9169152, 9169203..9169295,9172484..9172585,9172637..9172702, 9172754..9172852)) /gene="2J458" /locus_tag="2J458" /codon_start=1 /evidence=experimental /product="integral membrane protein (2J458)" /protein_id="17536423" /db_xref="GI:17536423" /db_xref="AceView/WormGenes:2J458" /db_xref="LocusID:174457" // > 4844_NC_003280 protein_id:17533915; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J642"; intron(phase:10000,position:24,74,152,195,270); exon(number:6,size:23,50,78,43,75,29,sum:298); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(9350775..9350864,9350914..9351138, 9351311..9351439,9351486..9351719,9351771..9351919, 9352567..9352636)) /gene="2J642" /locus_tag="2J642" /codon_start=1 /evidence=experimental /product="succinate ubiquinone, Iron-sulfur subunit of mitochondrial succinatedehydrogenase; succinate ubiquinone oxidoreductase complex II iron-sulfur Ip subunit (32.9 kD) (2J642)" /protein_id="17533915" /db_xref="GI:17533915" /db_xref="AceView/WormGenes:2J642" /db_xref="LocusID:174482" // > 4853_NC_003280 protein_id:17537333; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J689"; intron(phase:112,position:30,68,136); exon(number:4,size:29,38,68,33,sum:168); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(9398771..9398858,9398908..9399021,9399242..9399446, 9399634..9399733) /gene="2J689" /locus_tag="2J689" /codon_start=1 /product="predicted CDS, CC domain and metridin-like ShK toxin precursor (2J689)" /protein_id="17537333" /db_xref="GI:17537333" /db_xref="AceView/WormGenes:2J689" /db_xref="LocusID:190141" // > 4877_NC_003280 protein_id:17535577; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J746"; intron(phase:12,position:5,97); exon(number:3,size:4,92,273,sum:369); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(9455319..9456138,9456185..9456461, 9456507..9456519)) /gene="2J746" /locus_tag="2J746" /codon_start=1 /product="predicted CDS, glycoside hydrolase, family 18 (2J746)" /protein_id="17535577" /db_xref="GI:17535577" /db_xref="AceView/WormGenes:2J746" /db_xref="LocusID:187737" // > 4915_NC_003280 protein_id:17536291; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J902"; intron(phase:122,position:71,172,205); exon(number:4,size:70,101,33,64,sum:268); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(9613418..9613610,9613918..9614016, 9614061..9614364,9614506..9614716)) /gene="2J902" /locus_tag="2J902" /codon_start=1 /product="transcription factor (2J902)" /protein_id="17536291" /db_xref="GI:17536291" /db_xref="AceView/WormGenes:2J902" /db_xref="LocusID:188539" // > 4922_NC_003280 protein_id:17538135; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J941"; intron(phase:001,position:106,192,240); exon(number:4,size:105,86,48,130,sum:369); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(9649395..9649709,9649809..9650066,9650175..9650319, 9650400..9650791) /gene="2J941" /locus_tag="2J941" /codon_start=1 /evidence=experimental /product="putative nuclear protein of eukaryotic origin (2J941)" /protein_id="17538135" /db_xref="GI:17538135" /db_xref="AceView/WormGenes:2J941" /db_xref="LocusID:174518" // > 4924_NC_003280 protein_id:17538125; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J944b"; intron(phase:00,position:37,68); exon(number:3,size:36,31,48,sum:115); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(9652283..9652429,9652475..9652567, 9652764..9652871)) /gene="2J944b" /locus_tag="2J944b" /codon_start=1 /product="predicted CDS, MSP-domain protein like family member, possibly N-myristoylated (2J944b)" /protein_id="17538125" /db_xref="GI:17538125" /db_xref="AceView/WormGenes:2J944b" /db_xref="LocusID:191560" // > 4938_NC_003280 protein_id:17537411; Caenorhabditis elegans chromosome II, complete sequence. /gene="2J992"; intron(phase:00210,position:30,104,136,215,283); exon(number:6,size:29,74,32,79,68,56,sum:338); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(9701862..9702032,9702246..9702448, 9702493..9702728,9702775..9702872,9703246..9703467, 9703517..9703603)) /gene="2J992" /locus_tag="2J992" /codon_start=1 /evidence=experimental /product="mo25 (39.4 kD) (2J992)" /protein_id="17537411" /db_xref="GI:17537411" /db_xref="AceView/WormGenes:2J992" /db_xref="LocusID:174527" // > 4964_NC_003280 protein_id:17537995; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K121"; intron(phase:2010001,position:63,98,123,190,220,276,342); exon(number:8,size:62,35,25,67,30,56,66,37,sum:378); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(9835125..9835312,9835363..9835465,9835508..9835583, 9835628..9835827,9835873..9835962,9836251..9836418, 9836466..9836664,9836717..9836829) /gene="2K121" /locus_tag="2K121" /codon_start=1 /product="ARRestin and ARRestin family member (2K121)" /protein_id="17537995" /db_xref="GI:17537995" /db_xref="AceView/WormGenes:2K121" /db_xref="LocusID:191469" // > 5026_NC_003280 protein_id:17533501; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K428"; intron(phase:1012012,position:39,80,120,162,177,197,428); exon(number:8,size:38,41,40,42,15,20,231,63,sum:490); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10141360..10141549,10141616..10142309, 10142797..10142857,10142906..10142948,10142996..10143122, 10143234..10143354,10143410..10143531,10143981..10144095)) /gene="2K428" /locus_tag="2K428" /codon_start=1 /product="predicted CDS, putative nuclear protein, with a coiled coil-4 domain (2K428)" /protein_id="17533501" /db_xref="GI:17533501" /db_xref="AceView/WormGenes:2K428" /db_xref="LocusID:185023" // > 5032_NC_003280 protein_id:17535777; Caenorhabditis elegans chromosome II, complete sequence. /gene="srd-1"; intron(phase:10010020,position:39,129,164,197,236,261,319,345); exon(number:9,size:38,90,35,33,39,25,58,26,27,sum:371); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10180102..10180185,10180309..10180384, 10180705..10180880,10180926..10181000,10181049..10181164, 10181217..10181316,10181364..10181468,10181517..10181785, 10182523..10182637)) /gene="srd-1" /locus_tag="2K470" /codon_start=1 /product="serpentine Receptor, class D (delta) (srd-1)" /protein_id="17535777" /db_xref="GI:17535777" /db_xref="AceView/WormGenes:srd-1" /db_xref="LocusID:191794" // > 5050_NC_003280 protein_id:17538025; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K568"; intron(phase:2221,position:13,45,115,146); exon(number:5,size:12,32,70,31,31,sum:176); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10278634..10278728,10278839..10278930, 10279057..10279266,10279461..10279556,10280324..10280361)) /gene="2K568" /locus_tag="2K568" /codon_start=1 /evidence=experimental /product="putative endoplasmic reticulum protein (2K568)" /protein_id="17538025" /db_xref="GI:17538025" /db_xref="AceView/WormGenes:2K568" /db_xref="LocusID:174592" // > 5125_NC_003280 protein_id:17535197; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K933"; intron(phase:001000012000022,position:76,137,189,243,296,324,377,417,491,554,615,642,715,746,817); exon(number:16,size:75,61,52,54,53,28,53,40,74,63,61,27,73,31,71,45,sum:861); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(10639686..10639910,10639958..10640140, 10640188..10640344,10640451..10640611,10640662..10640820, 10641049..10641132,10641181..10641339,10641390..10641510, 10641557..10641779,10641899..10642085,10642154..10642336, 10642383..10642463,10642509..10642727,10642879..10642973, 10643021..10643233,10643304..10643439) /gene="2K933" /locus_tag="2K933" /codon_start=1 /evidence=experimental /product="putative protein family member, with at least 6 transmembrane domains, 3 coiled coil-4 domains (2K933)" /protein_id="17535197" /db_xref="GI:17535197" /db_xref="AceView/WormGenes:2K933" /db_xref="LocusID:174642" // > 5127_NC_003280 protein_id:32565587; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K939"; intron(phase:001,position:38,80,108); exon(number:4,size:37,42,28,143,sum:250); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(10647419..10647529,10647590..10647715, 10647767..10647851,10647996..10648426) /gene="2K939" /locus_tag="2K939" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil-4 domain (24.9 kD) (2K939)" /protein_id="32565587" /db_xref="GI:32565587" /db_xref="AceView/WormGenes:2K939" /db_xref="LocusID:187463" // > 5129_NC_003280 protein_id:17535191; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K944"; intron(phase:2010200,position:52,94,226,275,303,325,371); exon(number:8,size:51,42,132,49,28,22,46,61,sum:431); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10652482..10652667,10653403..10653540, 10653740..10653803,10654507..10654592,10655159..10655304, 10655926..10656322,10657089..10657212,10657417..10657571)) /gene="2K944" /locus_tag="2K944" /codon_start=1 /evidence=experimental /product="esterase A precursor family member (2K944)" /protein_id="17535191" /db_xref="GI:17535191" /db_xref="AceView/WormGenes:2K944" /db_xref="LocusID:174644" // > 5132_NC_003280 protein_id:17532713; Caenorhabditis elegans chromosome II, complete sequence. /gene="2K950"; intron(phase:0,position:34); exon(number:2,size:33,147,sum:180); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10660277..10660720,10660764..10660862)) /gene="2K950" /locus_tag="2K950" /codon_start=1 /product="zinc finger RING protein family like (2K950)" /protein_id="17532713" /db_xref="GI:17532713" /db_xref="AceView/WormGenes:2K950" /db_xref="LocusID:183961" // > 5139_NC_003280 protein_id:17532627; Caenorhabditis elegans chromosome II, complete sequence. /gene="col-39"; intron(phase:0,position:48); exon(number:2,size:47,276,sum:323); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(10704825..10704965,10705033..10705863) /gene="col-39" /locus_tag="2K995" /codon_start=1 /evidence=experimental /product="COLlagen structural gene (31.6 kD) (col-39)" /protein_id="17532627" /db_xref="GI:17532627" /db_xref="AceView/WormGenes:col-39" /db_xref="LocusID:174651" // > 5172_NC_003280 protein_id:17534025; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L204"; intron(phase:01,position:72,96); exon(number:3,size:71,24,31,sum:126); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10915046..10915140,10915342..10915414, 10915460..10915672)) /gene="2L204" /locus_tag="2L204" /codon_start=1 /product="predicted CDS, putative protein, with a transmembrane domain (2L204)" /protein_id="17534025" /db_xref="GI:17534025" /db_xref="AceView/WormGenes:2L204" /db_xref="LocusID:185751" // > 5173_NC_003280 protein_id:17534027; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L206"; intron(phase:002,position:20,63,159); exon(number:4,size:19,43,96,122,sum:280); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(10915838..10916204,10916530..10916819, 10916877..10917005,10917064..10917120)) /gene="2L206" /locus_tag="2L206" /codon_start=1 /product="putative nuclear protein family member (2L206)" /protein_id="17534027" /db_xref="GI:17534027" /db_xref="AceView/WormGenes:2L206" /db_xref="LocusID:185752" // > 5189_NC_003280 protein_id:17533635; Caenorhabditis elegans chromosome II, complete sequence. /gene="cey-1"; intron(phase:00,position:6,175); exon(number:3,size:5,169,34,sum:208); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11039928..11040032,11040145..11040651, 11041018..11041032)) /gene="cey-1" /locus_tag="2L330" /codon_start=1 /evidence=experimental /product="C.Elegans Y-box (21.3 kD) (cey-1)" /protein_id="17533635" /db_xref="GI:17533635" /db_xref="AceView/WormGenes:cey-1" /db_xref="LocusID:174690" // > 5198_NC_003280 protein_id:17531725; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L388"; intron(phase:12,position:38,86); exon(number:3,size:37,48,20,sum:105); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11096522..11096582,11096795..11096939, 11096993..11097104)) /gene="2L388" /locus_tag="2L388" /codon_start=1 /evidence=experimental /product="60S ribosomal protein L44 (12.4 kD) (2L388)" /protein_id="17531725" /db_xref="GI:17531725" /db_xref="AceView/WormGenes:2L388" /db_xref="LocusID:174695" // > 5202_NC_003280 protein_id:17531739; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L395"; intron(phase:002101,position:31,115,186,232,269,315); exon(number:7,size:30,84,71,46,37,46,49,sum:363); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(11104423..11104512,11104570..11104821, 11104876..11105090,11105136..11105272,11105322..11105431, 11105476..11105614,11105663..11105811) /gene="2L395" /locus_tag="2L395" /codon_start=1 /product="predicted CDS, putative protein family member (2L395)" /protein_id="17531739" /db_xref="GI:17531739" /db_xref="AceView/WormGenes:2L395" /db_xref="LocusID:182481" // > 5236_NC_003280 protein_id:17536467; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L593"; intron(phase:220,position:48,251,282); exon(number:4,size:47,203,31,31,sum:312); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(11301262..11301404,11301460..11302068, 11302116..11302206,11302257..11302352) /gene="2L593" /locus_tag="2L593" /codon_start=1 /evidence=experimental /product="adenovirus interacting protein 1 (35.8 kD) (2L593)" /protein_id="17536467" /db_xref="GI:17536467" /db_xref="AceView/WormGenes:2L593" /db_xref="LocusID:174726" // > 5244_NC_003280 protein_id:17531363; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L630"; intron(phase:100220100,position:34,72,99,136,176,287,332,375,420); exon(number:10,size:33,38,27,37,40,111,45,43,45,35,sum:454); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11340189..11340296,11340346..11340480, 11340522..11340649,11341167..11341302,11341352..11341682, 11341731..11341850,11341965..11342077,11342124..11342204, 11342255..11342367,11343329..11343428)) /gene="2L630" /locus_tag="2L630" /codon_start=1 /evidence=experimental /product="neurotransmitter-gated ion-channel with standard ligand binding domain but atypical transmembrane region family member (52.6 kD) (2L630)" /protein_id="17531363" /db_xref="GI:17531363" /db_xref="AceView/WormGenes:2L630" /db_xref="LocusID:174733" // > 5252_NC_003280 protein_id:17531527; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L702"; intron(phase:001100110,position:10,36,96,155,194,232,286,339,372); exon(number:10,size:9,26,60,59,39,38,54,53,33,36,sum:407); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11412359..11412469,11412566..11412663, 11412720..11412878,11413019..11413181,11413327..11413440, 11413493..11413608,11413658..11413834,11414058..11414238, 11414448..11414525,11414675..11414701)) /gene="2L702" /locus_tag="2L702" /codon_start=1 /evidence=experimental /product="stromal cell derived factor receptor 2 (2L702)" /protein_id="17531527" /db_xref="GI:17531527" /db_xref="AceView/WormGenes:2L702" /db_xref="LocusID:174740" // > 5271_NC_003280 protein_id:17531297; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L776"; intron(phase:10,position:52,95); exon(number:3,size:51,43,45,sum:139); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11485531..11485668,11486317..11486444, 11486491..11486644)) /gene="2L776" /locus_tag="2L776" /codon_start=1 /evidence=experimental /product="esophageal gland cell secretory protein 11 like precursor family member (15.2 kD) (2L776)" /protein_id="17531297" /db_xref="GI:17531297" /db_xref="AceView/WormGenes:2L776" /db_xref="LocusID:174757" // > 5313_NC_003280 protein_id:17532461; Caenorhabditis elegans chromosome II, complete sequence. /gene="2L995"; intron(phase:21000000000,position:147,394,520,550,592,638,688,717,752,824,896); exon(number:12,size:146,247,126,30,42,46,50,29,35,72,72,40,sum:935); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(11696067..11696506,11696562..11697301, 11697816..11698192,11700495..11700584,11700630..11700755, 11701396..11701533,11701584..11701733,11702480..11702566, 11702617..11702721,11703462..11703677,11703978..11704193, 11705056..11705178) /gene="2L995" /locus_tag="2L995" /codon_start=1 /evidence=experimental /product="excision repair cross-complementing rodent deficiency complementation group 4 (107.2 kD) (2L995)" /protein_id="17532461" /db_xref="GI:17532461" /db_xref="AceView/WormGenes:2L995" /db_xref="LocusID:174793" // > 5325_NC_003280 protein_id:17534013; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M48"; intron(phase:0,position:26); exon(number:2,size:25,620,sum:645); {splice:gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11757108..11758970,11759080..11759154)) /gene="2M48" /locus_tag="2M48" /codon_start=1 /evidence=experimental /product="heat shock protein (70.6 kD) (2M48)" /protein_id="17534013" /db_xref="GI:17534013" /db_xref="AceView/WormGenes:2M48" /db_xref="LocusID:174805" // > 5328_NC_003280 protein_id:17534009; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M63"; intron(phase:110212110102,position:21,101,142,230,283,371,485,531,622,734,763,788); exon(number:13,size:20,80,41,88,53,88,114,46,91,112,29,25,33,sum:820); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(11766668..11766728,11766863..11767102, 11767150..11767271,11767326..11767591,11767637..11767794, 11767852..11768116,11768161..11768501,11771785..11771922, 11772104..11772375,11773161..11773497,11773545..11773630, 11773712..11773788,11773836..11773935) /gene="2M63" /locus_tag="2M63" /codon_start=1 /product="predicted CDS, leucine-rich repeat containing protein family member (2M63)" /protein_id="17534009" /db_xref="GI:17534009" /db_xref="AceView/WormGenes:2M63" /db_xref="LocusID:185735" // > 5330_NC_003280 protein_id:17534003; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M66"; intron(phase:10000020,position:21,69,123,187,382,475,641,753); exon(number:9,size:20,48,54,64,195,93,166,112,81,sum:833); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11774929..11775174,11775223..11775556, 11775608..11776107,11776155..11776433,11776486..11777070, 11777118..11777309,11777353..11777514,11777566..11777708, 11777756..11777816)) /gene="2M66" /locus_tag="2M66" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil-4 domain (93.7 kD) (2M66)" /protein_id="17534003" /db_xref="GI:17534003" /db_xref="AceView/WormGenes:2M66" /db_xref="LocusID:174808" // > 5362_NC_003280 protein_id:32564405; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M252"; intron(phase:0101,position:58,113,199,232); exon(number:5,size:57,55,86,33,53,sum:284); {splice:gtag,gcag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(11960907..11961067,11961111..11961210, 11961268..11961524,11961573..11961738,11961785..11961955)) /gene="2M252" /locus_tag="2M252" /codon_start=1 /evidence=experimental /product="putative nuclear protein (2M252)" /protein_id="32564405" /db_xref="GI:32564405" /db_xref="AceView/WormGenes:2M252" /db_xref="LocusID:174832" // > 5372_NC_003280 protein_id:17536927; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M287"; intron(phase:0011,position:72,122,249,292); exon(number:5,size:71,50,127,43,80,sum:371); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(11992909..11993121,11993699..11993848, 11994990..11995371,11996993..11997121,11997555..11997796) /gene="2M287" /locus_tag="2M287" /codon_start=1 /evidence=experimental /product="deoxyhypusine synthase (40.5 kD) (2M287)" /protein_id="17536927" /db_xref="GI:17536927" /db_xref="AceView/WormGenes:2M287" /db_xref="LocusID:174840" // > 5404_NC_003280 protein_id:17537599; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M498"; intron(phase:10,position:110,148); exon(number:3,size:109,38,38,sum:185); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(12200611..12200727,12201041..12201153, 12201944..12202271)) /gene="2M498" /locus_tag="2M498" /codon_start=1 /product="SPP30 (2M498)" /protein_id="17537599" /db_xref="GI:17537599" /db_xref="AceView/WormGenes:2M498" /db_xref="LocusID:190338" // > 5451_NC_003280 protein_id:17537659; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M722"; intron(phase:2001,position:38,111,139,200); exon(number:5,size:37,73,28,61,48,sum:247); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(12433502..12433647,12434467..12434650, 12434712..12434795,12434847..12435063,12435628..12435740)) /gene="2M722" /locus_tag="2M722" /codon_start=1 /product="putative protein family member, with at least 3 transmembrane domains (2M722)" /protein_id="17537659" /db_xref="GI:17537659" /db_xref="AceView/WormGenes:2M722" /db_xref="LocusID:174882" // > 5514_NC_003280 protein_id:17537125; Caenorhabditis elegans chromosome II, complete sequence. /gene="2M975"; intron(phase:12101,position:17,52,94,162,207); exon(number:6,size:16,35,42,68,45,91,sum:297); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(12681621..12681669,12681716..12681821, 12682804..12682928,12683864..12684066,12684263..12684398, 12685396..12685670) /gene="2M975" /locus_tag="2M975" /codon_start=1 /evidence=experimental /product="heme (2M975)" /protein_id="17537125" /db_xref="GI:17537125" /db_xref="AceView/WormGenes:2M975" /db_xref="LocusID:174899" // > 5538_NC_003280 protein_id:17537171; Caenorhabditis elegans chromosome II, complete sequence. /gene="2N141"; intron(phase:000,position:23,253,345); exon(number:4,size:22,230,92,55,sum:399); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(12850340..12850405,12850464..12851153, 12851208..12851483,12851541..12851708) /gene="2N141" /locus_tag="2N141" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member, with a coiled coil domain (46.3 kD) (2N141)" /protein_id="17537171" /db_xref="GI:17537171" /db_xref="AceView/WormGenes:2N141" /db_xref="LocusID:174921" // > 5550_NC_003280 protein_id:17533689; Caenorhabditis elegans chromosome II, complete sequence. /gene="2N195"; intron(phase:10211,position:34,110,175,239,306); exon(number:6,size:33,76,65,64,67,89,sum:394); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(12904307..12904406,12904466..12904692, 12904767..12904963,12905011..12905201,12905913..12906113, 12906165..12906433) /gene="2N195" /locus_tag="2N195" /codon_start=1 /evidence=experimental /product="von Willebrand factor, type A and c-type lectin family member (2N195)" /protein_id="17533689" /db_xref="GI:17533689" /db_xref="AceView/WormGenes:2N195" /db_xref="LocusID:174929" // > 5558_NC_003280 protein_id:17534535; Caenorhabditis elegans chromosome II, complete sequence. /gene="2N218"; intron(phase:1110,position:15,46,228,297); exon(number:5,size:14,31,182,69,45,sum:341); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(12925924..12926061,12926106..12926311, 12926982..12927527,12927576..12927668,12928106..12928148)) /gene="2N218" /locus_tag="2N218" /codon_start=1 /evidence=experimental /product="protein phosphatase family member (2N218)" /protein_id="17534535" /db_xref="GI:17534535" /db_xref="AceView/WormGenes:2N218" /db_xref="LocusID:174933" // > 5603_NC_003280 protein_id:17533251; Caenorhabditis elegans chromosome II, complete sequence. /gene="2N528"; intron(phase:01,position:22,82); exon(number:3,size:21,60,64,sum:145); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(13236340..13236533,13237419..13237599, 13237731..13237793)) /gene="2N528" /locus_tag="2N528" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (2N528)" /protein_id="17533251" /db_xref="GI:17533251" /db_xref="AceView/WormGenes:2N528" /db_xref="LocusID:174968" // > 5638_NC_003280 protein_id:32564145; Caenorhabditis elegans chromosome II, complete sequence. /gene="2N815"; intron(phase:102,position:99,213,298); exon(number:4,size:98,114,85,72,sum:369); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(13517799..13518093,13519105..13519445, 13520740..13520996,13522596..13522812) /gene="2N815" /locus_tag="2N815" /codon_start=1 /evidence=experimental /product="serpentine receptor Sre, putative G protein-coupled chemoreceptor family member (2N815)" /protein_id="32564145" /db_xref="GI:32564145" /db_xref="AceView/WormGenes:2N815" /db_xref="LocusID:186258" // > 5643_NC_003280 protein_id:17537251; Caenorhabditis elegans chromosome II, complete sequence. /gene="2N858"; intron(phase:0022220101101,position:78,141,183,209,236,296,414,437,474,510,525,554,595); exon(number:14,size:77,63,42,26,27,60,118,23,37,36,15,29,41,41,sum:635); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(13568103..13568227,13569233..13569356, 13569479..13569564,13569621..13569665,13569719..13569827, 13571155..13571264,13571447..13571516,13571593..13571944, 13573477..13573656,13573706..13573786,13574138..13574215, 13574271..13574398,13574471..13574659,13574717..13574947)) /gene="2N858" /locus_tag="2N858" /codon_start=1 /evidence=experimental /product="novel immunogenic protein NIP-2 like (2N858)" /protein_id="17537251" /db_xref="GI:17537251" /db_xref="AceView/WormGenes:2N858" /db_xref="LocusID:175001" // > 5669_NC_003280 protein_id:17537537; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O2"; intron(phase:0200,position:28,71,160,286); exon(number:5,size:27,43,89,126,34,sum:319); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(13712905..13713009,13713660..13714037, 13714377..13714641,13715012..13715142,13715649..13715729)) /gene="2O2" /locus_tag="2O2" /codon_start=1 /product="solute carrier family 39 member 1 (2O2)" /protein_id="17537537" /db_xref="GI:17537537" /db_xref="AceView/WormGenes:2O2" /db_xref="LocusID:190293" // > 5674_NC_003280 protein_id:17535501; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O45"; intron(phase:2001,position:55,85,181,325); exon(number:5,size:54,30,96,144,32,sum:356); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(13752207..13752370,13752430..13752517, 13753596..13753883,13754482..13754914,13755953..13756050) /gene="2O45" /locus_tag="2O45" /codon_start=1 /evidence=experimental /product="ARRestin and ARRestin family member (39.6 kD) (2O45)" /protein_id="17535501" /db_xref="GI:17535501" /db_xref="AceView/WormGenes:2O45" /db_xref="LocusID:175021" // > 5694_NC_003280 protein_id:17536769; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O239"; intron(phase:102,position:98,211,296); exon(number:4,size:97,113,85,68,sum:363); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(13949472..13949763,13950557..13950894, 13950956..13951212,13951547..13951751) /gene="2O239" /locus_tag="2O239" /codon_start=1 /product="serpentine receptor Sre, putative G protein-coupled chemoreceptor family member (2O239)" /protein_id="17536769" /db_xref="GI:17536769" /db_xref="AceView/WormGenes:2O239" /db_xref="LocusID:189279" // > 5711_NC_003280 protein_id:17532875; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O301"; intron(phase:002022,position:7,122,162,195,244,309); exon(number:7,size:6,115,40,33,49,65,27,sum:335); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(14008548..14008565,14008908..14009252, 14009325..14009446,14009494..14009590,14009640..14009788, 14010132..14010326,14010378..14010459) /gene="2O301" /locus_tag="2O301" /codon_start=1 /evidence=experimental /product="i-67 protein (2O301)" /protein_id="17532875" /db_xref="GI:17532875" /db_xref="AceView/WormGenes:2O301" /db_xref="LocusID:175051" // > 5714_NC_003280 protein_id:17532881; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O306"; intron(phase:102221,position:87,113,160,206,252,305); exon(number:7,size:86,26,47,46,46,53,43,sum:347); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(14017847..14017977,14018021..14018178, 14018821..14018958,14019018..14019155,14019203..14019345, 14019935..14020011,14020569..14020827)) /gene="2O306" /locus_tag="2O306" /codon_start=1 /product="putative protein family member (2O306)" /protein_id="17532881" /db_xref="GI:17532881" /db_xref="AceView/WormGenes:2O306" /db_xref="LocusID:184059" // > 5756_NC_003280 protein_id:17535489; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O638"; intron(phase:101020120,position:28,295,354,469,586,659,842,984,1181); exon(number:10,size:27,267,59,115,117,73,183,142,197,287,sum:1467); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(14350756..14351619,14351992..14352580, 14353183..14353609,14353657..14354206,14354252..14354468, 14355439..14355791,14355844..14356187,14356259..14356436, 14356482..14357281,14357328..14357409)) /gene="2O638" /locus_tag="2O638" /codon_start=1 /evidence=experimental /product="glycogen debranching enzyme (2O638)" /protein_id="17535489" /db_xref="GI:17535489" /db_xref="AceView/WormGenes:2O638" /db_xref="LocusID:175091" // > 5772_NC_003280 protein_id:17531749; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O756"; intron(phase:00000200100,position:80,115,190,261,568,594,697,794,870,923,971); exon(number:12,size:79,35,75,71,307,26,103,97,76,53,48,32,sum:1002); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(14470413..14470511,14470614..14470757, 14471539..14471696,14471772..14472000,14472939..14473229, 14473843..14474149,14474846..14474925,14475829..14476749, 14477206..14477418,14478282..14478506,14478572..14478676, 14479270..14479506)) /gene="2O756" /locus_tag="2O756" /codon_start=1 /evidence=experimental /product="stromal cell derived factor receptor 2 (2O756)" /protein_id="17531749" /db_xref="GI:17531749" /db_xref="AceView/WormGenes:2O756" /db_xref="LocusID:175104" // > 5773_NC_003280 protein_id:17531751; Caenorhabditis elegans chromosome II, complete sequence. /gene="usp-14"; intron(phase:200,position:71,176,396); exon(number:4,size:70,105,220,94,sum:489); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(14485717..14486001,14486957..14487616, 14487992..14488304,14488351..14488562)) /gene="usp-14" /locus_tag="2O772" /codon_start=1 /evidence=experimental /product="ubiquitin specific protease (55.9 kD) (usp-14)" /protein_id="17531751" /db_xref="GI:17531751" /db_xref="AceView/WormGenes:usp-14" /db_xref="LocusID:175105" // > 5799_NC_003280 protein_id:17531459; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O883"; intron(phase:0001012,position:148,360,456,602,714,812,976); exon(number:8,size:147,212,96,146,112,98,164,74,sum:1049); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(14593404..14593844,14594378..14595013, 14595070..14595357,14595404..14595842,14595887..14596221, 14596378..14596672,14596724..14597216,14597271..14597493) /gene="2O883" /locus_tag="2O883" /codon_start=1 /evidence=experimental /product="ATPase (2O883)" /protein_id="17531459" /db_xref="GI:17531459" /db_xref="AceView/WormGenes:2O883" /db_xref="LocusID:175120" // > 5807_NC_003280 protein_id:25147709; Caenorhabditis elegans chromosome II, complete sequence. /gene="2O926"; intron(phase:221121000,position:17,97,218,280,361,399,435,580,610); exon(number:10,size:16,80,121,62,81,38,36,145,30,38,sum:647); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(14640255..14640371,14640509..14640598, 14640654..14641088,14641778..14641884,14641933..14642045, 14642090..14642333,14642381..14642566,14642613..14642974, 14643382..14643621,14643905..14643954)) /gene="2O926" /locus_tag="2O926" /codon_start=1 /evidence=experimental /product="alpha amylase, catalytic domain containing protein (73.4 kD) (2O926)" /protein_id="25147709" /db_xref="GI:25147709" /db_xref="AceView/WormGenes:2O926" /db_xref="LocusID:175125" // > 5847_NC_003280 protein_id:17537439; Caenorhabditis elegans chromosome II, complete sequence. /gene="2P266"; intron(phase:22,position:52,108); exon(number:3,size:51,56,37,sum:144); {splice:gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS complement(join(14982471..14982582,14982630..14982797, 14983734..14983888)) /gene="2P266" /locus_tag="2P266" /codon_start=1 /product="predicted CDS, C2H2 type zinc finger containing protein (2P266)" /protein_id="17537439" /db_xref="GI:17537439" /db_xref="AceView/WormGenes:2P266" /db_xref="LocusID:190208" // > 5852_NC_003280 protein_id:17537453; Caenorhabditis elegans chromosome II, complete sequence. /gene="2P311"; intron(phase:10022100121,position:77,133,226,280,307,339,391,482,532,631,673); exon(number:12,size:76,56,93,54,27,32,52,91,50,99,42,49,sum:721); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(15019103..15019331,15019401..15019567, 15020258..15020536,15020579..15020742,15021531..15021611, 15022289..15022383,15022534..15022688,15023096..15023368, 15023409..15023559,15024234..15024531,15025254..15025378, 15025426..15025574) /gene="2P311" /locus_tag="2P311" /codon_start=1 /evidence=experimental /product="amino acid (80.4 kD) (2P311)" /protein_id="17537453" /db_xref="GI:17537453" /db_xref="AceView/WormGenes:2P311" /db_xref="LocusID:190214" // > 5853_NC_003280 protein_id:17537455; Caenorhabditis elegans chromosome II, complete sequence. /gene="2P323"; intron(phase:00020011,position:4,61,185,506,613,756,827,905); exon(number:9,size:3,57,124,321,107,143,71,78,51,sum:955); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(15026075..15026083,15026142..15026312, 15026368..15026739,15027743..15028707,15029946..15030264, 15032638..15033066,15034363..15034576,15035428..15035661, 15036757..15036911) /gene="2P323" /locus_tag="2P323" /codon_start=1 /evidence=experimental /product="D111/G-patch domain and cell division protein FtsJ (2P323)" /protein_id="17537455" /db_xref="GI:17537455" /db_xref="AceView/WormGenes:2P323" /db_xref="LocusID:175156" // > 5859_NC_003280 protein_id:17537467; Caenorhabditis elegans chromosome II, complete sequence. /gene="2P359"; intron(phase:000,position:65,121,150); exon(number:4,size:64,56,29,111,sum:260); {splice:gtag,gtag,gtag} LOCUS NC_003280 15279300 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome II, complete sequence. ACCESSION NC_003280 VERSION NC_003280.2 GI:25168254 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279300) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 15279300) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..15279300 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="II" _HEADER_END_ CDS join(15077152..15077343,15077396..15077563, 15077610..15077696,15078985..15079320) /gene="2P359" /locus_tag="2P359" /codon_start=1 /product="major sperm protein domain containing protein (2P359)" /protein_id="17537467" /db_xref="GI:17537467" /db_xref="AceView/WormGenes:2P359" /db_xref="LocusID:190218" // > 5892_NC_003281 protein_id:17555488; Caenorhabditis elegans chromosome III, complete sequence. /gene="3A652"; intron(phase:222020,position:77,187,284,440,572,622); exon(number:7,size:76,110,97,156,132,50,13,sum:634); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(35650..35691,35746..35893,35947..36344, 37126..37591,37650..37940,37985..38314,39232..39461)) /gene="3A652" /locus_tag="3A652" /codon_start=1 /evidence=experimental /product="small optic lobes (3A652)" /protein_id="17555488" /db_xref="GI:17555488" /db_xref="AceView/WormGenes:3A652" /db_xref="LocusID:189220" // > 5898_NC_003281 protein_id:17553558; Caenorhabditis elegans chromosome III, complete sequence. /gene="3A704"; intron(phase:10,position:25,82); exon(number:3,size:24,57,38,sum:119); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(86779..86895,86948..87117,87186..87258)) /gene="3A704" /locus_tag="3A704" /codon_start=1 /product="putative nuclear protein (3A704)" /protein_id="17553558" /db_xref="GI:17553558" /db_xref="AceView/WormGenes:3A704" /db_xref="LocusID:186221" // > 5901_NC_003281 protein_id:17552404; Caenorhabditis elegans chromosome III, complete sequence. /gene="3A712"; intron(phase:2020222,position:54,94,123,172,199,226,245); exon(number:8,size:53,40,29,49,27,27,19,10,sum:254); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(95393..95423,95482..95538,95605..95685, 96786..96868,96918..97062,97240..97328,97406..97523, 97565..97725)) /gene="3A712" /locus_tag="3A712" /codon_start=1 /product="predicted CDS, putative protein family member (3A712)" /protein_id="17552404" /db_xref="GI:17552404" /db_xref="AceView/WormGenes:3A712" /db_xref="LocusID:183024" // > 5902_NC_003281 protein_id:17552406; Caenorhabditis elegans chromosome III, complete sequence. /gene="3A714"; intron(phase:20,position:54,94); exon(number:3,size:53,40,50,sum:143); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(98397..98549,98602..98719,98761..98921)) /gene="3A714" /locus_tag="3A714" /codon_start=1 /product="predicted CDS, putative protein (3A714)" /protein_id="17552406" /db_xref="GI:17552406" /db_xref="AceView/WormGenes:3A714" /db_xref="LocusID:183025" // > 5929_NC_003281 protein_id:17553344; Caenorhabditis elegans chromosome III, complete sequence. /gene="3A799"; intron(phase:10020210,position:72,142,180,213,245,290,347,449); exon(number:9,size:71,70,38,33,32,45,57,102,40,sum:488); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(181560..181773,181830..182038,182548..182661, 182707..182807,182854..182947,183488..183624, 183703..183872,184384..184688,184741..184863) /gene="3A799" /locus_tag="3A799" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (3A799)" /protein_id="17553344" /db_xref="GI:17553344" /db_xref="AceView/WormGenes:3A799" /db_xref="LocusID:185554" // > 5932_NC_003281 protein_id:17553340; Caenorhabditis elegans chromosome III, complete sequence. /gene="ubc-20"; intron(phase:0020,position:41,73,100,143); exon(number:5,size:40,32,27,43,57,sum:199); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(188840..188959,189012..189107,189175..189257, 189314..189440,190401..190574) /gene="ubc-20" /locus_tag="3A807" /codon_start=1 /evidence=experimental /product="ubiquitin conjugating enzyme (22.3 kD) (ubc-20)" /protein_id="17553340" /db_xref="GI:17553340" /db_xref="AceView/WormGenes:ubc-20" /db_xref="LocusID:175185" // > 5962_NC_003281 protein_id:25151908; Caenorhabditis elegans chromosome III, complete sequence. /gene="3B136"; intron(phase:12121101112,position:72,157,282,361,403,502,688,769,821,872,961); exon(number:12,size:71,85,125,79,42,99,186,81,52,51,89,28,sum:988); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(518411..518495,518546..518813, 519209..519361,519418..519573,519622..519865, 520282..520838,520886..521182,521292..521416, 521549..521786,521835..522208,522253..522508, 522620..522833)) /gene="3B136" /locus_tag="3B136" /codon_start=1 /product="nematode-specific EB region and pancreatic trypsin inhibitor family member (3B136)" /protein_id="25151908" /db_xref="GI:25151908" /db_xref="AceView/WormGenes:3B136" /db_xref="LocusID:188757" // > 5982_NC_003281 protein_id:17555494; Caenorhabditis elegans chromosome III, complete sequence. /gene="3B261"; intron(phase:0220,position:84,119,285,412); exon(number:5,size:83,35,166,127,72,sum:483); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(642069..642317,642507..642613,643316..643813, 644465..644843,645308..645526) /gene="3B261" /locus_tag="3B261" /codon_start=1 /product="dna-directed RNA polymerases III polypeptide like (3B261)" /protein_id="17555494" /db_xref="GI:17555494" /db_xref="AceView/WormGenes:3B261" /db_xref="LocusID:189252" // > 5986_NC_003281 protein_id:32564603; Caenorhabditis elegans chromosome III, complete sequence. /gene="3B295"; intron(phase:00222100,position:89,123,216,352,466,556,601,642); exon(number:9,size:88,34,93,136,114,90,45,41,66,sum:707); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(676123..676386,676437..676538,676587..676867, 677202..677609,678050..678391,678665..678933, 678983..679116,679165..679287,679841..680041) /gene="3B295" /locus_tag="3B295" /codon_start=1 /evidence=experimental /product="g protein-coupled receptor kinase w02b3.2 (80.9 kD) (3B295)" /protein_id="32564603" /db_xref="GI:32564603" /db_xref="AceView/WormGenes:3B295" /db_xref="LocusID:175223" // > 6022_NC_003281 protein_id:17555262; Caenorhabditis elegans chromosome III, complete sequence. /gene="3B482"; intron(phase:10,position:117,288); exon(number:3,size:116,171,136,sum:423); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(867500..867910,868437..868948, 869500..869848)) /gene="3B482" /locus_tag="3B482" /codon_start=1 /product="putative nuclear protein (3B482)" /protein_id="17555262" /db_xref="GI:17555262" /db_xref="AceView/WormGenes:3B482" /db_xref="LocusID:188843" // > 6037_NC_003281 protein_id:25144079; Caenorhabditis elegans chromosome III, complete sequence. /gene="pef-1"; intron(phase:110010,position:17,82,125,339,564,660); exon(number:7,size:16,65,43,214,225,96,48,sum:707); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(919687..919833,919892..920178, 920961..921636,923401..924042,925004..925131, 925368..925562,926186..926234)) /gene="pef-1" /locus_tag="3B538" /codon_start=1 /evidence=experimental /product="protein Phosphatase with EF hands, homologous to Drosophila retinal degeneration C (80.3 kD) (pef-1)" /protein_id="25144079" /db_xref="GI:25144079" /db_xref="AceView/WormGenes:pef-1" /db_xref="LocusID:175257" // > 6044_NC_003281 protein_id:17555040; Caenorhabditis elegans chromosome III, complete sequence. /gene="3B568"; intron(phase:220,position:18,46,253); exon(number:4,size:17,28,207,69,sum:321); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(949350..949559,949606..950224, 950291..950374,950433..950485)) /gene="3B568" /locus_tag="3B568" /codon_start=1 /evidence=experimental /product="cyclin-like F-box and Protein of unknown function DUF38 family member (37.7 kD) (3B568)" /protein_id="17555040" /db_xref="GI:17555040" /db_xref="AceView/WormGenes:3B568" /db_xref="LocusID:175258" // > 6088_NC_003281 protein_id:17556729; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C345"; intron(phase:000,position:161,199,215); exon(number:4,size:160,38,16,62,sum:276); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(1255541..1256020,1256067..1256180,1256630..1256677, 1256731..1256919) /gene="3C345" /locus_tag="3C345" /codon_start=1 /product="predicted CDS, putative protein, with at least 5 transmembrane domains (3C345)" /protein_id="17556729" /db_xref="GI:17556729" /db_xref="AceView/WormGenes:3C345" /db_xref="LocusID:191039" // > 6094_NC_003281 protein_id:17556775; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C354"; intron(phase:20,position:28,235); exon(number:3,size:27,207,71,sum:305); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(1267393..1267608,1268344..1268962, 1269152..1269234)) /gene="3C354" /locus_tag="3C354" /codon_start=1 /product="predicted CDS, cyclin-like F-box and Protein of unknown function DUF38 family member (3C354)" /protein_id="17556775" /db_xref="GI:17556775" /db_xref="AceView/WormGenes:3C354" /db_xref="LocusID:191060" // > 6106_NC_003281 protein_id:17556715; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C391"; intron(phase:20,position:30,240); exon(number:3,size:29,210,82,sum:321); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(1303704..1303792,1303837..1304464,1305203..1305451) /gene="3C391" /locus_tag="3C391" /codon_start=1 /product="predicted CDS, cyclin-like F-box and Protein of unknown function DUF38 family member (3C391)" /protein_id="17556715" /db_xref="GI:17556715" /db_xref="AceView/WormGenes:3C391" /db_xref="LocusID:191032" // > 6149_NC_003281 protein_id:32564647; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C659"; intron(phase:01100020,position:10,38,85,173,184,295,346,401); exon(number:9,size:9,28,47,88,11,111,51,55,31,sum:431); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(1558872..1558898,1558949..1559033,1559100..1559240, 1560205..1560467,1560528..1560560,1563285..1563617, 1564968..1565122,1565383..1565545,1569746..1569841) /gene="3C659" /locus_tag="3C659" /codon_start=1 /evidence=experimental /product="ubiquitin thiolesterase, family 2 (3C659)" /protein_id="32564647" /db_xref="GI:32564647" /db_xref="AceView/WormGenes:3C659" /db_xref="LocusID:175310" // > 6160_NC_003281 protein_id:17555572; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C732"; intron(phase:02,position:47,59); exon(number:3,size:46,12,27,sum:85); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(1642638..1642719,1642776..1642813, 1644415..1644552)) /gene="3C732" /locus_tag="3C732" /codon_start=1 /product="predicted CDS, putative protein (3C732)" /protein_id="17555572" /db_xref="GI:17555572" /db_xref="AceView/WormGenes:3C732" /db_xref="LocusID:189505" // > 6163_NC_003281 protein_id:25145145; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C746"; intron(phase:0,position:93); exon(number:2,size:92,60,sum:152); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(1658265..1658447,1659566..1659841)) /gene="3C746" /locus_tag="3C746" /codon_start=1 /evidence=experimental /product="putative N-myristoylated protein family member (16.6 kD) (3C746)" /protein_id="25145145" /db_xref="GI:25145145" /db_xref="AceView/WormGenes:3C746" /db_xref="LocusID:189508" // > 6170_NC_003281 protein_id:32565399; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C780"; intron(phase:2012001,position:28,237,292,302,316,363,482); exon(number:8,size:27,209,55,10,14,47,119,56,sum:537); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(1692130..1692299,1692347..1692704, 1692749..1692889,1696511..1696550,1696824..1696854, 1697769..1697934,1697997..1698621,1698827..1698909)) /gene="3C780" /locus_tag="3C780" /codon_start=1 /evidence=experimental /product="cyclin-like F-box and Protein of unknown function DUF38 family member (3C780)" /protein_id="32565399" /db_xref="GI:32565399" /db_xref="AceView/WormGenes:3C780" /db_xref="LocusID:189515" // > 6179_NC_003281 protein_id:17555910; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C853"; intron(phase:2,position:48); exon(number:2,size:47,51,sum:98); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(1763513..1763655,1764575..1764728) /gene="3C853" /locus_tag="3C853" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (3C853)" /protein_id="17555910" /db_xref="GI:17555910" /db_xref="AceView/WormGenes:3C853" /db_xref="LocusID:175324" // > 6184_NC_003281 protein_id:17555774; Caenorhabditis elegans chromosome III, complete sequence. /gene="3C912"; intron(phase:010001,position:29,68,141,167,203,231); exon(number:7,size:28,39,73,26,36,28,74,sum:304); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(1821189..1821412,1821473..1821557, 1821604..1821711,1822654..1822731,1822789..1823006, 1823643..1823760,1823964..1824047)) /gene="3C912" /locus_tag="3C912" /codon_start=1 /evidence=experimental /product="platelet-derived growth factor precursor (34.1 kD) (3C912)" /protein_id="17555774" /db_xref="GI:17555774" /db_xref="AceView/WormGenes:3C912" /db_xref="LocusID:175327" // > 6222_NC_003281 protein_id:17556030; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D199"; intron(phase:1,position:50); exon(number:2,size:49,27,sum:76); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(2111801..2111948,2112306..2112388) /gene="3D199" /locus_tag="3D199" /codon_start=1 /product="putative protein (3D199)" /protein_id="17556030" /db_xref="GI:17556030" /db_xref="AceView/WormGenes:3D199" /db_xref="LocusID:190054" // > 6223_NC_003281 protein_id:17556038; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D200"; intron(phase:00202210,position:27,95,127,177,204,247,296,338); exon(number:9,size:26,68,32,50,27,43,49,42,19,sum:356); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(2112482..2112541,2113076..2113200, 2114775..2114920,2115091..2115219,2115896..2115978, 2116189..2116336,2116390..2116487,2116539..2116742, 2116794..2116871)) /gene="3D200" /locus_tag="3D200" /codon_start=1 /product="predicted CDS, C2H2 type zinc finger containing protein family member (3D200)" /protein_id="17556038" /db_xref="GI:17556038" /db_xref="AceView/WormGenes:3D200" /db_xref="LocusID:190056" // > 6225_NC_003281 protein_id:17556026; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D211"; intron(phase:0,position:24); exon(number:2,size:23,291,sum:314); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(2119540..2119608,2119650..2120525) /gene="3D211" /locus_tag="3D211" /codon_start=1 /evidence=experimental /product="transposable element tcb1 transposase (3D211)" /protein_id="17556026" /db_xref="GI:17556026" /db_xref="AceView/WormGenes:3D211" /db_xref="LocusID:190052" // > 6235_NC_003281 protein_id:17554824; Caenorhabditis elegans chromosome III, complete sequence. /gene="srd-65"; intron(phase:20001,position:65,98,145,238,264); exon(number:6,size:64,33,47,93,26,62,sum:325); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(2222471..2222658,2222707..2222785, 2222828..2223106,2223151..2223291,2223345..2223441, 2223795..2223988)) /gene="srd-65" /locus_tag="3D310" /codon_start=1 /product="serpentine Receptor, class D (delta) (srd-65)" /protein_id="17554824" /db_xref="GI:17554824" /db_xref="AceView/WormGenes:srd-65" /db_xref="LocusID:191823" // > 6246_NC_003281 protein_id:17555202; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D341"; intron(phase:02,position:6,212); exon(number:3,size:5,206,50,sum:261); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(2253437..2253451,2253912..2254531,2254620..2254770) /gene="3D341" /locus_tag="3D341" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (3D341)" /protein_id="17555202" /db_xref="GI:17555202" /db_xref="AceView/WormGenes:3D341" /db_xref="LocusID:188667" // > 6292_NC_003281 protein_id:32564230; Caenorhabditis elegans chromosome III, complete sequence. /gene="feh-1"; intron(phase:1102220,position:7,133,157,247,309,459,529); exon(number:8,size:6,126,24,90,62,150,70,26,sum:554); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(2555904..2555922,2556136..2556513,2556597..2556667, 2557612..2557883,2557990..2558175,2558230..2558679, 2559258..2559465,2560313..2560393) /gene="feh-1" /locus_tag="3D649" /codon_start=1 /evidence=experimental /product="mammalian FE65 Homolog, integrase-like protein (63.1 kD) (feh-1)" /protein_id="32564230" /db_xref="GI:32564230" /db_xref="AceView/WormGenes:feh-1" /db_xref="LocusID:175373" // > 6306_NC_003281 protein_id:17556462; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D717"; intron(phase:201,position:17,54,97); exon(number:4,size:16,37,43,47,sum:143); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(2629031..2629080,2630070..2630178,2630966..2631095, 2631145..2631287) /gene="3D717" /locus_tag="3D717" /codon_start=1 /evidence=experimental /product="putative protein (17.2 kD) (3D717)" /protein_id="17556462" /db_xref="GI:17556462" /db_xref="AceView/WormGenes:3D717" /db_xref="LocusID:190616" // > 6320_NC_003281 protein_id:17556442; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D846"; intron(phase:200,position:25,124,384); exon(number:4,size:24,99,260,94,sum:477); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(2757158..2757442,2757557..2758336, 2759137..2759431,2760670..2760743)) /gene="3D846" /locus_tag="3D846" /codon_start=1 /evidence=experimental /product="acid family member (3D846)" /protein_id="17556442" /db_xref="GI:17556442" /db_xref="AceView/WormGenes:3D846" /db_xref="LocusID:190610" // > 6323_NC_003281 protein_id:17556422; Caenorhabditis elegans chromosome III, complete sequence. /gene="3D871"; intron(phase:020,position:24,53,198); exon(number:4,size:23,29,145,80,sum:277); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(2781071..2781139,2781187..2781275,2781323..2781755, 2782519..2782761) /gene="3D871" /locus_tag="3D871" /codon_start=1 /evidence=experimental /product="DNA/pantothenate metabolism flavoprotein, C terminal (3D871)" /protein_id="17556422" /db_xref="GI:17556422" /db_xref="AceView/WormGenes:3D871" /db_xref="LocusID:175394" // > 6347_NC_003281 protein_id:17554580; Caenorhabditis elegans chromosome III, complete sequence. /gene="3E8"; intron(phase:000,position:31,114,146); exon(number:4,size:30,83,32,75,sum:220); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(2923652..2923879,2923922..2924017, 2924068..2924316,2924659..2924748)) /gene="3E8" /locus_tag="3E8" /codon_start=1 /product="predicted CDS, oxidored-nitro domain-containing protein like (3E8)" /protein_id="17554580" /db_xref="GI:17554580" /db_xref="AceView/WormGenes:3E8" /db_xref="LocusID:187786" // > 6363_NC_003281 protein_id:17553856; Caenorhabditis elegans chromosome III, complete sequence. /gene="sft-1"; intron(phase:02212,position:42,133,200,279,306); exon(number:6,size:41,91,67,79,27,18,sum:323); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(3086692..3086814,3088301..3088575,3089474..3089674, 3090336..3090571,3090682..3090763,3091584..3091638) /gene="sft-1" /locus_tag="3E179" /codon_start=1 /evidence=experimental /product="SurFeit homolog (sft-1)" /protein_id="17553856" /db_xref="GI:17553856" /db_xref="AceView/WormGenes:sft-1" /db_xref="LocusID:175415" // > 6393_NC_003281 protein_id:17556138; Caenorhabditis elegans chromosome III, complete sequence. /gene="3E382"; intron(phase:120,position:67,122,164); exon(number:4,size:66,55,42,218,sum:381); {splice:gtag,gcag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(3291891..3292547,3293673..3293796, 3293885..3294050,3294120..3294318)) /gene="3E382" /locus_tag="3E382" /codon_start=1 /evidence=experimental /product="mitochondrial ATP synthase regulatory component factor B like (3E382)" /protein_id="17556138" /db_xref="GI:17556138" /db_xref="AceView/WormGenes:3E382" /db_xref="LocusID:175431" // > 6430_NC_003281 protein_id:17554240; Caenorhabditis elegans chromosome III, complete sequence. /gene="3E602"; intron(phase:01221011,position:7,38,191,337,364,410,460,520); exon(number:9,size:6,31,153,146,27,46,50,60,120,sum:639); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(3511040..3511401,3512199..3512378, 3512423..3512573,3512627..3512763,3513371..3513450, 3513511..3513948,3513995..3514454,3515663..3515756, 3516583..3516600)) /gene="3E602" /locus_tag="3E602" /codon_start=1 /evidence=experimental /product="general substrate transporter family member (3E602)" /protein_id="17554240" /db_xref="GI:17554240" /db_xref="AceView/WormGenes:3E602" /db_xref="LocusID:175458" // > 6453_NC_003281 protein_id:17552176; Caenorhabditis elegans chromosome III, complete sequence. /gene="3E801"; intron(phase:101121,position:2,47,127,166,250,340); exon(number:7,size:1,45,80,39,84,90,252,sum:591); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(3709341..3709344,3709870..3710003,3710051..3710291, 3710345..3710461,3710988..3711240,3711294..3711562, 3712102..3712859) /gene="3E801" /locus_tag="3E801" /codon_start=1 /evidence=experimental /product="2OG-Fe oxygenase superfamily (67.4 kD) (3E801)" /protein_id="17552176" /db_xref="GI:17552176" /db_xref="AceView/WormGenes:3E801" /db_xref="LocusID:175476" // > 6467_NC_003281 protein_id:25145370; Caenorhabditis elegans chromosome III, complete sequence. /gene="3E880"; intron(phase:00021021,position:41,66,125,278,388,639,891,1003); exon(number:9,size:40,25,59,153,110,251,252,112,4,sum:1006); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(3790803..3790816,3791258..3791592, 3792037..3792794,3793453..3794204,3795065..3795393, 3795923..3796383,3796440..3796616,3799779..3799853, 3799896..3800015)) /gene="3E880" /locus_tag="3E880" /codon_start=1 /evidence=experimental /product="myotubularin (113.6 kD) (3E880)" /protein_id="25145370" /db_xref="GI:25145370" /db_xref="AceView/WormGenes:3E880" /db_xref="LocusID:175490" // > 6488_NC_003281 protein_id:17557111; Caenorhabditis elegans chromosome III, complete sequence. /gene="3F11"; intron(phase:212,position:71,178,205); exon(number:4,size:70,107,27,101,sum:305); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(3922427..3922638,3922787..3923106,3923156..3923237, 3923459..3923762) /gene="3F11" /locus_tag="3F11" /codon_start=1 /product="predicted CDS, nitrilase (3F11)" /protein_id="17557111" /db_xref="GI:17557111" /db_xref="AceView/WormGenes:3F11" /db_xref="LocusID:191515" // > 6502_NC_003281 protein_id:25145403; Caenorhabditis elegans chromosome III, complete sequence. /gene="3F107"; intron(phase:02000000,position:49,104,277,317,364,406,451,502); exon(number:9,size:48,55,173,40,47,42,45,51,47,sum:548); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(4012319..4012462,4012580..4012746,4012952..4013468, 4013515..4013634,4014067..4014207,4014303..4014428, 4014859..4014993,4015370..4015522,4015572..4015715) /gene="3F107" /locus_tag="3F107" /codon_start=1 /evidence=experimental /product="nostrin protein like (62.7 kD) (3F107)" /protein_id="25145403" /db_xref="GI:25145403" /db_xref="AceView/WormGenes:3F107" /db_xref="LocusID:183279" // > 6530_NC_003281 protein_id:17554638; Caenorhabditis elegans chromosome III, complete sequence. /gene="lrs-1"; intron(phase:200001,position:38,196,558,862,1072,1116); exon(number:7,size:37,158,362,304,210,44,71,sum:1186); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4181683..4181897,4181951..4182083, 4182341..4182970,4183240..4184151,4184577..4185662, 4186121..4186592,4186643..4186755)) /gene="lrs-1" /locus_tag="3F272" /codon_start=1 /evidence=experimental /product="leucyl tRNA Synthetase (134.5 kD) (lrs-1)" /protein_id="17554638" /db_xref="GI:17554638" /db_xref="AceView/WormGenes:lrs-1" /db_xref="LocusID:175538" // > 6544_NC_003281 protein_id:17554992; Caenorhabditis elegans chromosome III, complete sequence. /gene="3F338"; intron(phase:0000000112001102,position:59,331,367,499,545,606,897,924,1023,1139,1218,1352,1524,1554,1640,1823); exon(number:17,size:58,272,36,132,46,61,291,27,99,116,79,134,172,30,86,183,50,sum:1872); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4248640..4248790,4249503..4250053, 4250718..4250974,4251341..4251430,4251826..4252342, 4252582..4252983,4253262..4253496,4253546..4253894, 4257681..4257977,4258027..4258108,4258162..4259034, 4259542..4259724,4259772..4259909,4260852..4261247, 4261496..4261603,4261650..4262465,4262845..4263018)) /gene="3F338" /locus_tag="3F338" /codon_start=1 /evidence=experimental /product="putative protein of fungal and metazoan origin (3F338)" /protein_id="17554992" /db_xref="GI:17554992" /db_xref="AceView/WormGenes:3F338" /db_xref="LocusID:175548" // > 6596_NC_003281 protein_id:17553944; Caenorhabditis elegans chromosome III, complete sequence. /gene="ins-17"; intron(phase:1,position:50); exon(number:2,size:49,59,sum:108); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4477063..4477241,4477340..4477487)) /gene="ins-17" /locus_tag="3F566" /codon_start=1 /evidence=experimental /product="INSulin related (11.7 kD) (ins-17)" /protein_id="17553944" /db_xref="GI:17553944" /db_xref="AceView/WormGenes:ins-17" /db_xref="LocusID:175585" // > 6637_NC_003281 protein_id:17554888; Caenorhabditis elegans chromosome III, complete sequence. /gene="3F770"; intron(phase:22111,position:25,43,130,272,326); exon(number:6,size:24,18,87,142,54,134,sum:459); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4682737..4683140,4683343..4683504, 4683678..4684103,4684150..4684409,4684463..4684516, 4684671..4684744)) /gene="3F770" /locus_tag="3F770" /codon_start=1 /product="predicted CDS, c-type lectin family member (3F770)" /protein_id="17554888" /db_xref="GI:17554888" /db_xref="AceView/WormGenes:3F770" /db_xref="LocusID:188038" // > 6648_NC_003281 protein_id:32565482; Caenorhabditis elegans chromosome III, complete sequence. /gene="3F802"; intron(phase:2122010,position:20,39,79,110,222,576,669); exon(number:8,size:19,19,40,31,112,354,93,50,sum:718); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4712582..4712734,4712783..4713060, 4713153..4714215,4714261..4714594,4714642..4714734, 4714779..4714899,4714951..4715006,4715081..4715139)) /gene="3F802" /locus_tag="3F802" /codon_start=1 /evidence=experimental /product="putative protein (3F802)" /protein_id="32565482" /db_xref="GI:32565482" /db_xref="AceView/WormGenes:3F802" /db_xref="LocusID:175620" // > 6730_NC_003281 protein_id:17552336; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G72"; intron(phase:12110020,position:16,40,65,109,138,189,264,307); exon(number:9,size:15,24,25,44,29,51,75,43,67,sum:373); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4980605..4980808,4980860..4980986, 4981351..4981577,4981623..4981775,4981992..4982077, 4982131..4982262,4982314..4982387,4982486..4982558, 4984391..4984436)) /gene="3G72" /locus_tag="3G72" /codon_start=1 /product="predicted CDS, cyclin-like F-box (3G72)" /protein_id="17552336" /db_xref="GI:17552336" /db_xref="AceView/WormGenes:3G72" /db_xref="LocusID:259768" // > 6733_NC_003281 protein_id:17552338; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G82"; intron(phase:2000002122001,position:13,54,136,397,479,605,854,938,1001,1064,1515,1565,1664); exon(number:14,size:12,41,82,261,82,126,249,84,63,63,451,50,99,52,sum:1715); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gcag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(4991524..4991681,4991751..4992048, 4992095..4992244,4992294..4993644,4993691..4993879, 4993939..4994128,4994178..4994428,4994472..4995220, 4995265..4995642,4995692..4995937,4996027..4996809, 4997082..4997327,4997374..4997494,4997666..4997703)) /gene="3G82" /locus_tag="3G82" /codon_start=1 /evidence=experimental /product="putative protein, with a transmembrane domain, of bilaterial origin (3G82)" /protein_id="17552338" /db_xref="GI:17552338" /db_xref="AceView/WormGenes:3G82" /db_xref="LocusID:175677" // > 6777_NC_003281 protein_id:17554134; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G286"; intron(phase:20000,position:41,73,406,489,588); exon(number:6,size:40,32,333,83,99,75,sum:662); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(5196925..5197152,5197197..5197493, 5197996..5198244,5198292..5199290,5199344..5199437, 5199496..5199617)) /gene="3G286" /locus_tag="3G286" /codon_start=1 /evidence=experimental /product="NADPH-cytochrome 450 (75.2 kD) (3G286)" /protein_id="17554134" /db_xref="GI:17554134" /db_xref="AceView/WormGenes:3G286" /db_xref="LocusID:175710" // > 6833_NC_003281 protein_id:17553502; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G547"; intron(phase:01010220201,position:99,150,208,342,378,406,493,590,647,681,776); exon(number:12,size:98,51,58,134,36,28,87,97,57,34,95,46,sum:821); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(5453561..5453854,5454121..5454274,5454327..5454499, 5454940..5455342,5455681..5455787,5455837..5455922, 5456666..5456926,5456973..5457261,5457641..5457813, 5457923..5458022,5458335..5458620,5458785..5458924) /gene="3G547" /locus_tag="3G547" /codon_start=1 /evidence=experimental /product="amplified in osteosarcoma like precursor (3G547)" /protein_id="17553502" /db_xref="GI:17553502" /db_xref="AceView/WormGenes:3G547" /db_xref="LocusID:185984" // > 6842_NC_003281 protein_id:17554462; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G589"; intron(phase:000,position:18,89,137); exon(number:4,size:17,71,48,29,sum:165); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(5499188..5499238,5499289..5499501,5499550..5499693, 5499746..5499835) /gene="3G589" /locus_tag="3G589" /codon_start=1 /product="immature colon carcinoma transcript 1 like (3G589)" /protein_id="17554462" /db_xref="GI:17554462" /db_xref="AceView/WormGenes:3G589" /db_xref="LocusID:259963" // > 6850_NC_003281 protein_id:17552786; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G635"; intron(phase:2100002,position:43,73,116,144,242,307,344); exon(number:8,size:42,30,43,28,98,65,37,82,sum:425); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(5542164..5542291,5544257..5544345,5544386..5544513, 5544667..5544750,5544795..5545088,5545412..5545606, 5545680..5545792,5545934..5546180) /gene="3G635" /locus_tag="3G635" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (3G635)" /protein_id="17552786" /db_xref="GI:17552786" /db_xref="AceView/WormGenes:3G635" /db_xref="LocusID:175763" // > 6878_NC_003281 protein_id:17553594; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G768"; intron(phase:011,position:39,99,195); exon(number:4,size:38,60,96,68,sum:262); {splice:gcag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(5678011..5678216,5678263..5678550, 5678594..5678774,5678824..5678937)) /gene="3G768" /locus_tag="3G768" /codon_start=1 /evidence=experimental /product="putative protein (29.8 kD) (3G768)" /protein_id="17553594" /db_xref="GI:17553594" /db_xref="AceView/WormGenes:3G768" /db_xref="LocusID:175785" // > 6903_NC_003281 protein_id:17551752; Caenorhabditis elegans chromosome III, complete sequence. /gene="3G857"; intron(phase:1,position:61); exon(number:2,size:60,30,sum:90); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(5767831..5768011,5768201..5768292) /gene="3G857" /locus_tag="3G857" /codon_start=1 /evidence=experimental /product="putative mitochondrial protein (3G857)" /protein_id="17551752" /db_xref="GI:17551752" /db_xref="AceView/WormGenes:3G857" /db_xref="LocusID:175808" // > 6913_NC_003281 protein_id:25151743; Caenorhabditis elegans chromosome III, complete sequence. /gene="sma-4"; intron(phase:00000102000,position:30,56,161,208,243,314,368,410,466,500,541); exon(number:12,size:29,26,105,47,35,71,54,42,56,34,41,30,sum:570); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(5816212..5816298,5816499..5816576,5816732..5817046, 5817622..5817762,5818067..5818171,5818217..5818430, 5818662..5818822,5818955..5819082,5819131..5819296, 5819342..5819443,5819752..5819874,5819923..5820015) /gene="sma-4" /locus_tag="3G909" /codon_start=1 /evidence=experimental /product="SMAll body size SMA-4, dwarfin, transforming growth factor beta signal transducer similar to Mothers Against Decapentaplegic; controls body size and the arrangement of peripheral sense organs in the male tail (63.4 kD) (sma-4)" /protein_id="25151743" /db_xref="GI:25151743" /db_xref="AceView/WormGenes:sma-4" /db_xref="LocusID:175815" // > 6974_NC_003281 protein_id:17555858; Caenorhabditis elegans chromosome III, complete sequence. /gene="3H239"; intron(phase:0,position:34); exon(number:2,size:33,88,sum:121); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6148138..6148236,6148684..6148950) /gene="3H239" /locus_tag="3H239" /codon_start=1 /evidence=experimental /product="putative nuclear protein (13.5 kD) (3H239)" /protein_id="17555858" /db_xref="GI:17555858" /db_xref="AceView/WormGenes:3H239" /db_xref="LocusID:175866" // > 7001_NC_003281 protein_id:17555004; Caenorhabditis elegans chromosome III, complete sequence. /gene="3H359"; intron(phase:00002012,position:34,118,147,203,250,298,371,407); exon(number:9,size:33,84,29,56,47,48,73,36,39,sum:445); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6251751..6251849,6251899..6252150,6252467..6252553, 6252618..6252785,6252827..6252969,6253218..6253359, 6270600..6270819,6270864..6270972,6271036..6271153) /gene="3H359" /locus_tag="3H359" /codon_start=1 /evidence=experimental /product="imidazolonepropionase (3H359)" /protein_id="17555004" /db_xref="GI:17555004" /db_xref="AceView/WormGenes:3H359" /db_xref="LocusID:175887" // > 7064_NC_003281 protein_id:17554822; Caenorhabditis elegans chromosome III, complete sequence. /gene="srb-11"; intron(phase:10000,position:18,85,158,192,290); exon(number:6,size:17,67,73,34,98,64,sum:353); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(6491303..6491497,6491543..6491836, 6492157..6492258,6492304..6492522,6492580..6492779, 6493287..6493338)) /gene="srb-11" /locus_tag="3H582" /codon_start=1 /product="serpentine Receptor, class B (beta) (srb-11)" /protein_id="17554822" /db_xref="GI:17554822" /db_xref="AceView/WormGenes:srb-11" /db_xref="LocusID:191793" // > 7066_NC_003281 protein_id:17553112; Caenorhabditis elegans chromosome III, complete sequence. /gene="3H587"; intron(phase:22,position:34,311); exon(number:3,size:33,277,35,sum:345); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6498579..6498679,6498917..6499747,6499853..6499958) /gene="3H587" /locus_tag="3H587" /codon_start=1 /product="cyclin-like F-box family member (3H587)" /protein_id="17553112" /db_xref="GI:17553112" /db_xref="AceView/WormGenes:3H587" /db_xref="LocusID:184905" // > 7099_NC_003281 protein_id:17553290; Caenorhabditis elegans chromosome III, complete sequence. /gene="3H799"; intron(phase:220,position:28,109,296); exon(number:4,size:27,81,187,24,sum:319); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6711877..6711959,6712006..6712248,6712363..6712921, 6712967..6713041) /gene="3H799" /locus_tag="3H799" /codon_start=1 /product="proteasome regulatory (3H799)" /protein_id="17553290" /db_xref="GI:17553290" /db_xref="AceView/WormGenes:3H799" /db_xref="LocusID:185404" // > 7100_NC_003281 protein_id:17553288; Caenorhabditis elegans chromosome III, complete sequence. /gene="3H807"; intron(phase:12011010,position:25,756,817,855,930,964,1069,1116); exon(number:9,size:24,731,61,38,75,34,105,47,48,sum:1163); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6713638..6713710,6713795..6715988,6716330..6716510, 6716566..6716680,6716730..6716954,6717080..6717180, 6717224..6717539,6717585..6717724,6717772..6717918) /gene="3H807" /locus_tag="3H807" /codon_start=1 /evidence=experimental /product="ankyrin like family member (132.3 kD) (3H807)" /protein_id="17553288" /db_xref="GI:17553288" /db_xref="AceView/WormGenes:3H807" /db_xref="LocusID:175945" // > 7136_NC_003281 protein_id:17553722; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I25"; intron(phase:020022000,position:51,88,124,176,220,250,299,331,409); exon(number:10,size:50,37,36,52,44,30,49,32,78,41,sum:449); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6931936..6932085,6932155..6932267,6932315..6932420, 6932473..6932628,6932675..6932808,6932857..6932946, 6932998..6933142,6933189..6933284,6933333..6933566, 6935459..6935584) /gene="3I25" /locus_tag="3I25" /codon_start=1 /evidence=experimental /product="bystin (51.6 kD) (3I25)" /protein_id="17553722" /db_xref="GI:17553722" /db_xref="AceView/WormGenes:3I25" /db_xref="LocusID:175968" // > 7146_NC_003281 protein_id:17554730; Caenorhabditis elegans chromosome III, complete sequence. /gene="rfc-4"; intron(phase:2020200,position:21,48,79,100,185,230,307); exon(number:8,size:20,27,31,21,85,45,77,28,sum:334); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(6972190..6972251,6972298..6972376,6972422..6972516, 6972565..6972625,6972691..6972947,6972995..6973127, 6973181..6973411,6973459..6973545) /gene="rfc-4" /locus_tag="3I63" /codon_start=1 /evidence=experimental /product="DNA Replication Factor C (rfc-4)" /protein_id="17554730" /db_xref="GI:17554730" /db_xref="AceView/WormGenes:rfc-4" /db_xref="LocusID:175976" // > 7167_NC_003281 protein_id:17556927; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I181"; intron(phase:011020002,position:42,59,139,215,241,296,330,382,454); exon(number:10,size:41,17,80,76,26,55,34,52,72,18,sum:471); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(7091228..7091350,7091393..7091444,7091494..7091733, 7091938..7092164,7092211..7092290,7092335..7092497, 7092585..7092686,7092734..7092889,7092934..7093151, 7093199..7093253) /gene="3I181" /locus_tag="3I181" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (3I181)" /protein_id="17556927" /db_xref="GI:17556927" /db_xref="AceView/WormGenes:3I181" /db_xref="LocusID:175990" // > 7169_NC_003281 protein_id:32564395; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I192"; intron(phase:1111,position:23,137,366,458); exon(number:5,size:22,114,229,92,67,sum:524); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7102159..7102361,7102406..7102681, 7102728..7103414,7103458..7103799,7103843..7103909)) /gene="3I192" /locus_tag="3I192" /codon_start=1 /evidence=experimental /product="variable region-containing chitin-binding protein 5 like precursor (53.7 kD) (3I192)" /protein_id="32564395" /db_xref="GI:32564395" /db_xref="AceView/WormGenes:3I192" /db_xref="LocusID:175991" // > 7174_NC_003281 protein_id:17551758; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I213"; intron(phase:000,position:21,72,153); exon(number:4,size:20,51,81,99,sum:251); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(7123108..7123167,7123215..7123367,7123415..7123657, 7123782..7124081) /gene="3I213" /locus_tag="3I213" /codon_start=1 /evidence=experimental /product="ribose isomerase A (27.2 kD) (3I213)" /protein_id="17551758" /db_xref="GI:17551758" /db_xref="AceView/WormGenes:3I213" /db_xref="LocusID:175995" // > 7191_NC_003281 protein_id:32565223; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I273"; intron(phase:200,position:44,65,105); exon(number:4,size:43,21,40,41,sum:145); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(7180685..7180815,7181016..7181076,7181122..7181241, 7181577..7181702) /gene="3I273" /locus_tag="3I273" /codon_start=1 /evidence=experimental /product="phosphopantetheine-binding domain containing protein family member (16.7 kD) (3I273)" /protein_id="32565223" /db_xref="GI:32565223" /db_xref="AceView/WormGenes:3I273" /db_xref="LocusID:176008" // > 7192_NC_003281 protein_id:17553308; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I275"; intron(phase:02220,position:24,75,155,203,267); exon(number:6,size:23,51,80,48,64,49,sum:315); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(7182229..7182297,7182488..7182642,7182688..7182927, 7182978..7183121,7183351..7183540,7183590..7183739) /gene="3I275" /locus_tag="3I275" /codon_start=1 /evidence=experimental /product="etoposide induced mRNA like (36.6 kD) (3I275)" /protein_id="17553308" /db_xref="GI:17553308" /db_xref="AceView/WormGenes:3I275" /db_xref="LocusID:176009" // > 7195_NC_003281 protein_id:17553314; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I276"; intron(phase:1,position:115); exon(number:2,size:114,86,sum:200); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7187812..7188071,7188128..7188470)) /gene="3I276" /locus_tag="3I276" /codon_start=1 /product="putative protein (3I276)" /protein_id="17553314" /db_xref="GI:17553314" /db_xref="AceView/WormGenes:3I276" /db_xref="LocusID:185422" // > 7244_NC_003281 protein_id:17553930; Caenorhabditis elegans chromosome III, complete sequence. /gene="hmg-4"; intron(phase:020,position:80,292,602); exon(number:4,size:79,212,310,96,sum:697); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7379200..7379490,7379543..7380470, 7380533..7381170,7381278..7381514)) /gene="hmg-4" /locus_tag="3I470" /codon_start=1 /evidence=experimental /product="high Mobility Group protein (78.6 kD) (hmg-4)" /protein_id="17553930" /db_xref="GI:17553930" /db_xref="AceView/WormGenes:hmg-4" /db_xref="LocusID:176052" // > 7257_NC_003281 protein_id:17552114; Caenorhabditis elegans chromosome III, complete sequence. /gene="cgh-1"; intron(phase:001,position:36,204,343); exon(number:4,size:35,168,139,88,sum:430); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7496180..7496445,7496594..7497011, 7497057..7497560,7497608..7497712)) /gene="cgh-1" /locus_tag="3I586" /codon_start=1 /evidence=experimental /product="rna helicase, Conserved Germline Helicase CGH-1 (48.7 kD) (cgh-1)" /protein_id="17552114" /db_xref="GI:17552114" /db_xref="AceView/WormGenes:cgh-1" /db_xref="LocusID:176061" // > 7280_NC_003281 protein_id:17557083; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I730"; intron(phase:00001022000,position:85,153,187,219,267,313,402,419,469,517,689); exon(number:12,size:84,68,34,32,48,46,89,17,50,48,172,29,sum:717); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7641149..7641238,7641286..7641801, 7641849..7641992,7642876..7643023,7643311..7643361, 7643411..7643679,7644519..7644655,7645297..7645441, 7646119..7646214,7646261..7646362,7646408..7646611, 7646657..7646908)) /gene="3I730" /locus_tag="3I730" /codon_start=1 /evidence=experimental /product="tyrosine specific protein phosphatase and Purine and other phosphorylases, family 1 (3I730)" /protein_id="17557083" /db_xref="GI:17557083" /db_xref="AceView/WormGenes:3I730" /db_xref="LocusID:176077" // > 7305_NC_003281 protein_id:17552124; Caenorhabditis elegans chromosome III, complete sequence. /gene="3I884"; intron(phase:21002,position:52,108,151,177,226); exon(number:6,size:51,56,43,26,49,37,sum:262); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7793579..7793690,7793979..7794127, 7794188..7794265,7794551..7794678,7794844..7795010, 7795106..7795260)) /gene="3I884" /locus_tag="3I884" /codon_start=1 /evidence=experimental /product="BTB/POZ domain containing protein (3I884)" /protein_id="17552124" /db_xref="GI:17552124" /db_xref="AceView/WormGenes:3I884" /db_xref="LocusID:176092" // > 7334_NC_003281 protein_id:17552388; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J27"; intron(phase:0001012,position:44,69,182,242,285,304,413); exon(number:8,size:43,25,113,60,43,19,109,88,sum:500); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gttg} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(7937780..7937908,7937951..7938025,7938133..7938471, 7938784..7938964,7939343..7939470,7939546..7939603, 7939649..7939976,7940406..7940670) /gene="3J27" /locus_tag="3J27" /codon_start=1 /product="predicted CDS, glycoside hydrolase, family 59 (3J27)" /protein_id="17552388" /db_xref="GI:17552388" /db_xref="AceView/WormGenes:3J27" /db_xref="LocusID:183002" // > 7341_NC_003281 protein_id:17552390; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J46"; intron(phase:0,position:47); exon(number:2,size:46,162,sum:208); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7957267..7957755,7957891..7958028)) /gene="3J46" /locus_tag="3J46" /codon_start=1 /product="putative protein (3J46)" /protein_id="17552390" /db_xref="GI:17552390" /db_xref="AceView/WormGenes:3J46" /db_xref="LocusID:259871" // > 7344_NC_003281 protein_id:17553632; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J54"; intron(phase:2200002020010,position:45,110,211,335,474,563,592,637,661,721,759,791,844); exon(number:14,size:44,65,101,124,139,89,29,45,24,60,38,32,53,37,sum:880); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(7966565..7966678,7966751..7966908, 7966958..7967054,7967110..7967223,7967331..7967508, 7967553..7967626,7967694..7967826,7968040..7968128, 7968171..7968437,7968503..7968919,7970360..7970731, 7970775..7971075,7971653..7971847,7971892..7972025)) /gene="3J54" /locus_tag="3J54" /codon_start=1 /product="predicted CDS, cyclin-like F-box family member (3J54)" /protein_id="17553632" /db_xref="GI:17553632" /db_xref="AceView/WormGenes:3J54" /db_xref="LocusID:186269" // > 7387_NC_003281 protein_id:17552812; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J246"; intron(phase:020100,position:26,197,251,321,374,420); exon(number:7,size:25,171,54,70,53,46,24,sum:443); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(8155995..8156069,8156153..8156290, 8156335..8156492,8156536..8156746,8156799..8156958, 8157011..8157525,8158013..8158087)) /gene="3J246" /locus_tag="3J246" /codon_start=1 /evidence=experimental /product="putative nuclear protein of bilaterial origin (3J246)" /protein_id="17552812" /db_xref="GI:17552812" /db_xref="AceView/WormGenes:3J246" /db_xref="LocusID:176150" // > 7406_NC_003281 protein_id:17551944; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J335"; intron(phase:02020,position:47,91,153,180,230); exon(number:6,size:46,44,62,27,50,32,sum:261); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8244358..8244495,8244539..8244672,8244715..8244898, 8245108..8245190,8245243..8245390,8245439..8245537) /gene="3J335" /locus_tag="3J335" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil-4 domain, of eukaryotic origin (3J335)" /protein_id="17551944" /db_xref="GI:17551944" /db_xref="AceView/WormGenes:3J335" /db_xref="LocusID:176162" // > 7411_NC_003281 protein_id:17552982; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J345"; intron(phase:2211220,position:126,148,225,268,362,385,420); exon(number:8,size:125,22,77,43,94,23,35,65,sum:484); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8254888..8255264,8255341..8255406,8255804..8256033, 8256294..8256422,8256470..8256752,8256968..8257036, 8257154..8257256,8257301..8257498) /gene="3J345" /locus_tag="3J345" /codon_start=1 /product="predicted CDS, 21 2 (3J345)" /protein_id="17552982" /db_xref="GI:17552982" /db_xref="AceView/WormGenes:3J345" /db_xref="LocusID:184268" // > 7427_NC_003281 protein_id:17552996; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J413"; intron(phase:0021,position:24,87,128,155); exon(number:5,size:23,63,41,27,43,sum:197); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8323099..8323167,8323211..8323399,8323445..8323569, 8324037..8324116,8324162..8324292) /gene="3J413" /locus_tag="3J413" /codon_start=1 /product="putative protein, with at least 2 transmembrane domains (3J413)" /protein_id="17552996" /db_xref="GI:17552996" /db_xref="AceView/WormGenes:3J413" /db_xref="LocusID:184303" // > 7449_NC_003281 protein_id:17556895; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J483"; intron(phase:22,position:40,70); exon(number:3,size:39,30,30,sum:99); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8398636..8398754,8398802..8398891,8398958..8399048) /gene="3J483" /locus_tag="3J483" /codon_start=1 /product="putative protein (3J483)" /protein_id="17556895" /db_xref="GI:17556895" /db_xref="AceView/WormGenes:3J483" /db_xref="LocusID:191286" // > 7455_NC_003281 protein_id:17557153; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J511"; intron(phase:0202000,position:57,86,190,243,670,809,985); exon(number:8,size:56,29,104,53,427,139,176,16,sum:1000); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8416139..8416306,8416631..8416719,8416858..8417167, 8419117..8419277,8419491..8420769,8420825..8421241, 8421705..8422232,8422286..8422336) /gene="3J511" /locus_tag="3J511" /codon_start=1 /evidence=experimental /product="putative protein (3J511)" /protein_id="17557153" /db_xref="GI:17557153" /db_xref="AceView/WormGenes:3J511" /db_xref="LocusID:176189" // > 7476_NC_003281 protein_id:32565579; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J641"; intron(phase:1,position:15); exon(number:2,size:14,27,sum:41); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8552487..8552529,8552840..8552922) /gene="3J641" /locus_tag="3J641" /codon_start=1 /evidence=experimental /product="putative protein (3J641)" /protein_id="32565579" /db_xref="GI:32565579" /db_xref="AceView/WormGenes:3J641" /db_xref="LocusID:182113" // > 7486_NC_003281 protein_id:17552054; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J700"; intron(phase:102022021020,position:25,78,110,210,348,403,563,620,788,847,904,1093); exon(number:13,size:24,53,32,100,138,55,160,57,168,59,57,189,56,sum:1148); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(8609963..8610133,8610538..8611102, 8611172..8611344,8611427..8611602,8611667..8612169, 8612213..8612385,8612435..8612912,8612959..8613123, 8613196..8613611,8613676..8613973,8614021..8614118, 8614182..8614339,8614383..8614455)) /gene="3J700" /locus_tag="3J700" /codon_start=1 /evidence=experimental /product="kurz (3J700)" /protein_id="17552054" /db_xref="GI:17552054" /db_xref="AceView/WormGenes:3J700" /db_xref="LocusID:176207" // > 7489_NC_003281 protein_id:17552736; Caenorhabditis elegans chromosome III, complete sequence. /gene="ceh-16"; intron(phase:1120,position:16,82,126,153); exon(number:5,size:15,66,44,27,51,sum:203); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8622557..8622602,8622785..8622982,8623300..8623432, 8623579..8623657,8625744..8625899) /gene="ceh-16" /locus_tag="3J715" /codon_start=1 /product="C.Elegans Homeobox (ceh-16)" /protein_id="17552736" /db_xref="GI:17552736" /db_xref="AceView/WormGenes:ceh-16" /db_xref="LocusID:191618" // > 7511_NC_003281 protein_id:17551814; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J794"; intron(phase:0101110021010202,position:20,80,217,293,326,374,447,495,571,586,605,653,697,732,761,792); exon(number:17,size:19,60,137,76,33,48,73,48,76,15,19,48,44,35,29,31,47,sum:838); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(8703343..8703484,8703529..8703623, 8703677..8703761,8703811..8703917,8704298..8704428, 8704510..8704654,8704699..8704754,8704804..8704847, 8706350..8706579,8706735..8706878,8707308..8707525, 8707760..8707903,8707945..8708043,8708087..8708315, 8708362..8708771,8709026..8709206,8709255..8709311)) /gene="3J794" /locus_tag="3J794" /codon_start=1 /evidence=experimental /product="cotransporter -Cl (3J794)" /protein_id="17551814" /db_xref="GI:17551814" /db_xref="AceView/WormGenes:3J794" /db_xref="LocusID:176222" // > 7523_NC_003281 protein_id:17554374; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J859"; intron(phase:02,position:32,53); exon(number:3,size:31,21,118,sum:170); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(8768213..8768305,8768358..8768422,8768698..8769052) /gene="3J859" /locus_tag="3J859" /codon_start=1 /evidence=experimental /product="single-strand binding protein like (3J859)" /protein_id="17554374" /db_xref="GI:17554374" /db_xref="AceView/WormGenes:3J859" /db_xref="LocusID:187502" // > 7537_NC_003281 protein_id:17553446; Caenorhabditis elegans chromosome III, complete sequence. /gene="3J922"; intron(phase:220020,position:107,173,229,595,1165,1217); exon(number:7,size:106,66,56,366,570,52,67,sum:1283); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(8832690..8832893,8833007..8833160, 8833207..8834918,8835829..8836926,8836974..8837139, 8837183..8837380,8837955..8838274)) /gene="3J922" /locus_tag="3J922" /codon_start=1 /evidence=experimental /product="low density lipoprotein-receptor, class A (3J922)" /protein_id="17553446" /db_xref="GI:17553446" /db_xref="AceView/WormGenes:3J922" /db_xref="LocusID:176243" // > 7602_NC_003281 protein_id:17556959; Caenorhabditis elegans chromosome III, complete sequence. /gene="3K228"; intron(phase:0,position:41); exon(number:2,size:40,101,sum:141); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9138032..9138337,9138455..9138574)) /gene="3K228" /locus_tag="3K228" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein family member precursor (16.0 kD) (3K228)" /protein_id="17556959" /db_xref="GI:17556959" /db_xref="AceView/WormGenes:3K228" /db_xref="LocusID:176290" // > 7614_NC_003281 protein_id:17556789; Caenorhabditis elegans chromosome III, complete sequence. /gene="3K290"; intron(phase:101011111111111,position:6,25,49,185,269,390,431,466,489,805,1127,1193,1232,1291,1394); exon(number:16,size:5,19,24,136,84,121,41,35,23,316,322,66,39,59,103,23,sum:1416); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9199846..9199916,9199993..9200301, 9200349..9200525,9200950..9201066,9201138..9201335, 9201437..9202402,9202470..9203417,9203465..9203533, 9203585..9203689,9203736..9203858,9203933..9204295, 9204354..9204606,9204815..9205221,9205492..9205564, 9205619..9205674,9205926..9205941)) /gene="3K290" /locus_tag="3K290" /codon_start=1 /evidence=experimental /product="nematode-specific EB region and pancreatic trypsin inhibitor family member (3K290)" /protein_id="17556789" /db_xref="GI:17556789" /db_xref="AceView/WormGenes:3K290" /db_xref="LocusID:191073" // > 7617_NC_003281 protein_id:17555242; Caenorhabditis elegans chromosome III, complete sequence. /gene="rnr-1"; intron(phase:0022,position:43,136,379,596); exon(number:5,size:42,93,243,217,193,sum:788); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9225421..9226000,9226049..9226699, 9226922..9227652,9227700..9227978,9228023..9228148)) /gene="rnr-1" /locus_tag="3K316" /codon_start=1 /evidence=experimental /product="ribonucleotide reductase (89.0 kD) (rnr-1)" /protein_id="17555242" /db_xref="GI:17555242" /db_xref="AceView/WormGenes:rnr-1" /db_xref="LocusID:176301" // > 7641_NC_003281 protein_id:17552542; Caenorhabditis elegans chromosome III, complete sequence. /gene="3K478"; intron(phase:10000,position:9,72,309,373,434); exon(number:6,size:8,63,237,64,61,60,sum:493); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9387727..9387909,9387961..9388143, 9388192..9388383,9388437..9389147,9389220..9389407, 9389902..9389926)) /gene="3K478" /locus_tag="3K478" /codon_start=1 /evidence=experimental /product="solute carrier family 17 member (52.7 kD) (3K478)" /protein_id="17552542" /db_xref="GI:17552542" /db_xref="AceView/WormGenes:3K478" /db_xref="LocusID:176317" // > 7645_NC_003281 protein_id:17555298; Caenorhabditis elegans chromosome III, complete sequence. /gene="3K500"; intron(phase:00,position:45,86); exon(number:3,size:44,41,6,sum:91); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9412748..9412768,9413034..9413156, 9413203..9413334)) /gene="3K500" /locus_tag="3K500" /codon_start=1 /product="ribosomal protein S24e (3K500)" /protein_id="17555298" /db_xref="GI:17555298" /db_xref="AceView/WormGenes:3K500" /db_xref="LocusID:188943" // > 7657_NC_003281 protein_id:17551886; Caenorhabditis elegans chromosome III, complete sequence. /gene="baf-1"; intron(phase:0,position:42); exon(number:2,size:41,48,sum:89); {splice:gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(9467363..9467485,9467541..9467687) /gene="baf-1" /locus_tag="3K557" /codon_start=1 /evidence=experimental /product="barrier to Autointegration Factor (10.0 kD) (baf-1)" /protein_id="17551886" /db_xref="GI:17551886" /db_xref="AceView/WormGenes:baf-1" /db_xref="LocusID:176330" // > 7686_NC_003281 protein_id:17552722; Caenorhabditis elegans chromosome III, complete sequence. /gene="ced-7"; intron(phase:0220021002000,position:46,94,153,477,508,838,991,1053,1116,1202,1269,1354,1641); exon(number:14,size:45,48,59,324,31,330,153,62,63,86,67,85,287,64,sum:1704); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9570581..9570775,9571316..9572176, 9572224..9572478,9572532..9572730,9572778..9573037, 9573117..9573305,9573358..9573542,9573589..9574046, 9575754..9576745,9576834..9576926,9577030..9577999, 9578338..9578514,9578567..9578712,9578879..9579013)) /gene="ced-7" /locus_tag="3K660" /codon_start=1 /evidence=experimental /product="CEll Death abnormality CED-7, ATP-binding cassette transporter, cell corpse engulfment protein (191.4 kD) (ced-7)" /protein_id="17552722" /db_xref="GI:17552722" /db_xref="AceView/WormGenes:ced-7" /db_xref="LocusID:176352" // > 7701_NC_003281 protein_id:17553808; Caenorhabditis elegans chromosome III, complete sequence. /gene="gei-13"; intron(phase:100110202,position:170,216,298,343,437,496,612,644,706); exon(number:10,size:169,46,82,45,94,59,116,32,62,42,sum:747); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9632750..9632876,9633239..9633426, 9633479..9633572,9633629..9633978,9634028..9634203, 9634595..9634876,9635323..9635458,9635529..9635774, 9635970..9636106,9636652..9637159)) /gene="gei-13" /locus_tag="3K722" /codon_start=1 /evidence=experimental /product="GEX (Gut on EXterior) Interacting protein GEI-13, putative protein, with a coiled coil-4 domain (gei-13)" /protein_id="17553808" /db_xref="GI:17553808" /db_xref="AceView/WormGenes:gei-13" /db_xref="LocusID:176364" // > 7720_NC_003281 protein_id:17554944; Caenorhabditis elegans chromosome III, complete sequence. /gene="3K840"; intron(phase:01021,position:9,48,91,120,177); exon(number:6,size:8,39,43,29,57,61,sum:237); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9749604..9749788,9749837..9750006, 9750229..9750317,9750367..9750494,9750702..9750819, 9751169..9751192)) /gene="3K840" /locus_tag="3K840" /codon_start=1 /evidence=experimental /product="Dephospho-CoA kinase (27.4 kD) (3K840)" /protein_id="17554944" /db_xref="GI:17554944" /db_xref="AceView/WormGenes:3K840" /db_xref="LocusID:176375" // > 7732_NC_003281 protein_id:17554564; Caenorhabditis elegans chromosome III, complete sequence. /gene="3K882"; intron(phase:1101,position:19,57,115,127); exon(number:5,size:18,38,58,12,94,sum:220); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(9795441..9795724,9795853..9795889, 9795935..9796107,9796163..9796276,9796386..9796440)) /gene="3K882" /locus_tag="3K882" /codon_start=1 /product="putative protein family member, with at least 3 transmembrane domains (3K882)" /protein_id="17554564" /db_xref="GI:17554564" /db_xref="AceView/WormGenes:3K882" /db_xref="LocusID:187780" // > 7762_NC_003281 protein_id:17554036; Caenorhabditis elegans chromosome III, complete sequence. /gene="3L19"; intron(phase:010,position:28,51,104); exon(number:4,size:27,23,53,53,sum:156); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(9928992..9929072,9929271..9929340,9929388..9929545, 9930105..9930266) /gene="3L19" /locus_tag="3L19" /codon_start=1 /product="esophageal gland cell secretory protein 11 like family member (3L19)" /protein_id="17554036" /db_xref="GI:17554036" /db_xref="AceView/WormGenes:3L19" /db_xref="LocusID:186958" // > 7768_NC_003281 protein_id:17554038; Caenorhabditis elegans chromosome III, complete sequence. /gene="3L37"; intron(phase:21,position:47,87); exon(number:3,size:46,40,2,sum:88); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(9947321..9947460,9947520..9947638,9947683..9947690) /gene="3L37" /locus_tag="3L37" /codon_start=1 /evidence=experimental /product="putative N-myristoylated protein (9.7 kD) (3L37)" /protein_id="17554038" /db_xref="GI:17554038" /db_xref="AceView/WormGenes:3L37" /db_xref="LocusID:176408" // > 7808_NC_003281 protein_id:17557143; Caenorhabditis elegans chromosome III, complete sequence. /gene="3L211"; intron(phase:00012,position:19,63,147,324,424); exon(number:6,size:18,44,84,177,100,23,sum:446); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10120622..10120675,10120725..10120856, 10120915..10121166,10121219..10121750,10121857..10122157, 10122491..10122560) /gene="3L211" /locus_tag="3L211" /codon_start=1 /evidence=experimental /product="swi SNF-related matrix-associated actin-dependent regulator of chromatin d1 (51.7 kD) (3L211)" /protein_id="17557143" /db_xref="GI:17557143" /db_xref="AceView/WormGenes:3L211" /db_xref="LocusID:176426" // > 7814_NC_003281 protein_id:17554418; Caenorhabditis elegans chromosome III, complete sequence. /gene="pxf-2"; intron(phase:01000022102000,position:197,238,264,313,445,520,550,669,742,777,1072,1103,1171,1207); exon(number:15,size:196,41,26,49,132,75,30,119,73,35,295,31,68,36,28,sum:1234); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10187543..10188130,10189058..10189181, 10189227..10189303,10189563..10189709,10189979..10190374, 10190880..10191104,10191162..10191253,10191300..10191656, 10191710..10191927,10192420..10192523,10192580..10193466, 10193516..10193606,10194260..10194463,10194775..10194882, 10194930..10195016) /gene="pxf-2" /locus_tag="3L283" /codon_start=1 /evidence=experimental /product="PDZ domain-containing guanine nucleotide eXchange Factor (pxf-2)" /protein_id="17554418" /db_xref="GI:17554418" /db_xref="AceView/WormGenes:pxf-2" /db_xref="LocusID:176432" // > 7860_NC_003281 protein_id:17553836; Caenorhabditis elegans chromosome III, complete sequence. /gene="3L527"; intron(phase:00,position:21,135); exon(number:3,size:20,114,70,sum:204); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10436605..10436664,10436723..10437064, 10437179..10437391) /gene="3L527" /locus_tag="3L527" /codon_start=1 /evidence=experimental /product="putative protein family member, with a transmembrane domain, a coiled coil domain (22.7 kD) (3L527)" /protein_id="17553836" /db_xref="GI:17553836" /db_xref="AceView/WormGenes:3L527" /db_xref="LocusID:176463" // > 7890_NC_003281 protein_id:32564860; Caenorhabditis elegans chromosome III, complete sequence. /gene="hpr-9"; intron(phase:10012022201,position:14,38,80,118,153,289,307,368,392,462,495); exon(number:12,size:13,24,42,38,35,136,18,61,24,70,33,3,sum:497); {splice:gtag,gtag,gtag,gcag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10621457..10621496,10621546..10621616, 10621670..10621795,10621844..10621958,10622007..10622112, 10623046..10623451,10624248..10624303,10624357..10624539, 10624700..10624771,10625207..10625414,10625876..10625975, 10626052..10626062) /gene="hpr-9" /locus_tag="3L715" /codon_start=1 /evidence=experimental /product="homolog of S.Pombe Rad (56.6 kD) (hpr-9)" /protein_id="32564860" /db_xref="GI:32564860" /db_xref="AceView/WormGenes:hpr-9" /db_xref="LocusID:176483" // > 7904_NC_003281 protein_id:17555534; Caenorhabditis elegans chromosome III, complete sequence. /gene="3L797"; intron(phase:11,position:24,91); exon(number:3,size:23,67,83,sum:173); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10707595..10707664,10707713..10707913, 10707972..10708222) /gene="3L797" /locus_tag="3L797" /codon_start=1 /evidence=experimental /product="mitochondrial ribosomal protein L7L12 (18.4 kD) (3L797)" /protein_id="17555534" /db_xref="GI:17555534" /db_xref="AceView/WormGenes:3L797" /db_xref="LocusID:176495" // > 7920_NC_003281 protein_id:17554416; Caenorhabditis elegans chromosome III, complete sequence. /gene="ptr-19"; intron(phase:20221022100000,position:89,127,167,194,232,267,295,323,363,520,697,736,787,873); exon(number:15,size:88,38,40,27,38,35,28,28,40,157,177,39,51,86,131,sum:1003); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10781709..10781974,10782195..10782306, 10782715..10782836,10785467..10785547,10785732..10785844, 10785889..10785992,10786043..10786128,10786484..10786567, 10786617..10786735,10787850..10788319,10788819..10789349, 10789471..10789587,10789637..10789789,10790030..10790287, 10790609..10791004) /gene="ptr-19" /locus_tag="3L877" /codon_start=1 /product="PaTched Related (ptr-19)" /protein_id="17554416" /db_xref="GI:17554416" /db_xref="AceView/WormGenes:ptr-19" /db_xref="LocusID:191751" // > 7930_NC_003281 protein_id:17554364; Caenorhabditis elegans chromosome III, complete sequence. /gene="oxi-1"; intron(phase:200210212122,position:49,94,208,334,421,513,543,583,623,758,874,927); exon(number:13,size:48,45,114,126,87,92,30,40,40,135,116,53,140,sum:1066); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10858141..10858286,10858940..10859072, 10859576..10859917,10860462..10860841,10861556..10861815, 10861951..10862225,10862381..10862472,10862600..10862718, 10863046..10863166,10863931..10864334,10865123..10865471, 10866064..10866222,10866274..10866694) /gene="oxi-1" /locus_tag="3L955" /codon_start=1 /evidence=experimental /product="OXidative stress Induced OXI-1, ubiquitin protein ligase (120.9 kD) (oxi-1)" /protein_id="17554364" /db_xref="GI:17554364" /db_xref="AceView/WormGenes:oxi-1" /db_xref="LocusID:176515" // > 7949_NC_003281 protein_id:17555482; Caenorhabditis elegans chromosome III, complete sequence. /gene="3M79"; intron(phase:0120,position:69,120,195,238); exon(number:5,size:68,51,75,43,78,sum:315); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(10987961..10988164,10988213..10988366, 10988422..10988647,10989176..10989302,10989663..10989899) /gene="3M79" /locus_tag="3M79" /codon_start=1 /evidence=experimental /product="u6 small nuclear RNA (3M79)" /protein_id="17555482" /db_xref="GI:17555482" /db_xref="AceView/WormGenes:3M79" /db_xref="LocusID:176529" // > 7987_NC_003281 protein_id:17553828; Caenorhabditis elegans chromosome III, complete sequence. /gene="gly-9"; intron(phase:11101000,position:45,179,276,344,373,454,492,534); exon(number:9,size:44,134,97,68,29,81,38,42,46,sum:579); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(11279582..11279722,11280284..11280409, 11280647..11280760,11281640..11281881,11282724..11282811, 11283251..11283453,11284076..11284366,11285362..11285763, 11285814..11285946)) /gene="gly-9" /locus_tag="3M370" /codon_start=1 /evidence=experimental /product="GLYcosylation related, UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase (66.4 kD) (gly-9)" /protein_id="17553828" /db_xref="GI:17553828" /db_xref="AceView/WormGenes:gly-9" /db_xref="LocusID:176557" // > 8008_NC_003281 protein_id:17555980; Caenorhabditis elegans chromosome III, complete sequence. /gene="3M554"; intron(phase:00100021,position:73,112,199,245,420,515,677,711); exon(number:9,size:72,39,87,46,175,95,162,34,51,sum:761); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(11463714..11463868,11464021..11464121, 11464624..11465111,11465636..11465920,11466044..11466568, 11468519..11468655,11469673..11469934,11470147..11470263, 11470417..11470632)) /gene="3M554" /locus_tag="3M554" /codon_start=1 /evidence=experimental /product="BED finger containing protein (3M554)" /protein_id="17555980" /db_xref="GI:17555980" /db_xref="AceView/WormGenes:3M554" /db_xref="LocusID:176576" // > 8036_NC_003281 protein_id:17553826; Caenorhabditis elegans chromosome III, complete sequence. /gene="gly-8"; intron(phase:20202200,position:36,63,97,182,226,279,319,370); exon(number:9,size:35,27,34,85,44,53,40,51,52,sum:421); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(11625070..11625176,11625463..11625541, 11625597..11625700,11626223..11626475,11626553..11626686, 11626733..11626891,11626939..11627056,11627672..11627824, 11627870..11628028) /gene="gly-8" /locus_tag="3M717" /codon_start=1 /evidence=experimental /product="GLYcosylation related, UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase, with ER retention signal (48.4 kD) (gly-8)" /protein_id="17553826" /db_xref="GI:17553826" /db_xref="AceView/WormGenes:gly-8" /db_xref="LocusID:176595" // > 8048_NC_003281 protein_id:17555842; Caenorhabditis elegans chromosome III, complete sequence. /gene="3M796"; intron(phase:20,position:100,170); exon(number:3,size:99,70,64,sum:233); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(11706870..11707064,11707893..11708100, 11708349..11708647)) /gene="3M796" /locus_tag="3M796" /codon_start=1 /evidence=experimental /product="putative protein of ancient origin (27.2 kD) (3M796)" /protein_id="17555842" /db_xref="GI:17555842" /db_xref="AceView/WormGenes:3M796" /db_xref="LocusID:176603" // > 8049_NC_003281 protein_id:17555844; Caenorhabditis elegans chromosome III, complete sequence. /gene="3M800"; intron(phase:00101000,position:137,168,215,315,353,401,432,507); exon(number:9,size:136,31,47,100,38,48,31,75,71,sum:577); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(11710804..11711019,11712030..11712254, 11713820..11713912,11714196..11714338,11714493..11714607, 11715702..11716000,11717042..11717183,11717904..11717996, 11718057..11718464)) /gene="3M800" /locus_tag="3M800" /codon_start=1 /evidence=experimental /product="novel protein YIL091C yeast like (66.7 kD) (3M800)" /protein_id="17555844" /db_xref="GI:17555844" /db_xref="AceView/WormGenes:3M800" /db_xref="LocusID:176604" // > 8050_NC_003281 protein_id:17555846; Caenorhabditis elegans chromosome III, complete sequence. /gene="elb-1"; intron(phase:00,position:40,78); exon(number:3,size:39,38,41,sum:118); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(11718815..11718940,11718988..11719101, 11719151..11719267)) /gene="elb-1" /locus_tag="3M808" /codon_start=1 /evidence=experimental /product="ELongin B, RNA polymerase II transcription elongation regulatory factor SIII (13.2 kD) (elb-1)" /protein_id="17555846" /db_xref="GI:17555846" /db_xref="AceView/WormGenes:elb-1" /db_xref="LocusID:176605" // > 8061_NC_003281 protein_id:17552282; Caenorhabditis elegans chromosome III, complete sequence. /gene="3M879"; intron(phase:000200,position:19,63,133,187,260,312); exon(number:7,size:18,44,70,54,73,52,73,sum:384); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(11787575..11787628,11787676..11787807, 11788065..11788274,11788346..11788509,11788559..11788775, 11788853..11789008,11789063..11789284) /gene="3M879" /locus_tag="3M879" /codon_start=1 /product="protein phosphatase family member (3M879)" /protein_id="17552282" /db_xref="GI:17552282" /db_xref="AceView/WormGenes:3M879" /db_xref="LocusID:182859" // > 8086_NC_003281 protein_id:17556280; Caenorhabditis elegans chromosome III, complete sequence. /gene="nft-1"; intron(phase:0000110,position:17,49,101,153,256,331,390); exon(number:8,size:16,32,52,52,103,75,59,51,sum:440); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(11923717..11923764,11924822..11924917, 11925076..11925231,11925278..11925433,11926580..11926889, 11928489..11928713,11928777..11928952,11929005..11929160) /gene="nft-1" /locus_tag="3N17" /codon_start=1 /evidence=experimental /product="NitFhit related protein, nitrilase and fragile histidine triad fusion protein (49.9 kD) (nft-1)" /protein_id="17556280" /db_xref="GI:17556280" /db_xref="AceView/WormGenes:nft-1" /db_xref="LocusID:176628" // > 8101_NC_003281 protein_id:25151424; Caenorhabditis elegans chromosome III, complete sequence. /gene="nob-1"; intron(phase:210,position:63,108,187); exon(number:4,size:62,45,79,32,sum:218); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(12077930..12078028,12079083..12079318, 12083724..12083857,12083902..12084089)) /gene="nob-1" /locus_tag="3N168" /codon_start=1 /evidence=experimental /product="HOX gene of the posterior group AbdB, required together with its neighboring gene Posterior Hox gene Paralog php-3 for posterior patterning of the embryo, kNOB-like posterior, NO Backside NOB-1 (24.4 kD) (nob-1)" /protein_id="25151424" /db_xref="GI:25151424" /db_xref="AceView/WormGenes:nob-1" /db_xref="LocusID:176641" // > 8132_NC_003281 protein_id:17556542; Caenorhabditis elegans chromosome III, complete sequence. /gene="3N449"; intron(phase:000,position:78,211,268); exon(number:4,size:77,133,57,77,sum:344); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(12359391..12359621,12359882..12360280, 12360562..12360732,12360841..12361074) /gene="3N449" /locus_tag="3N449" /codon_start=1 /product="putative protein family member, with at least 5 transmembrane domains (3N449)" /protein_id="17556542" /db_xref="GI:17556542" /db_xref="AceView/WormGenes:3N449" /db_xref="LocusID:190714" // > 8146_NC_003281 protein_id:17556062; Caenorhabditis elegans chromosome III, complete sequence. /gene="3N521"; intron(phase:202122,position:28,47,87,109,147,276); exon(number:7,size:27,19,40,22,38,129,52,sum:327); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(12430346..12430428,12430706..12430760, 12430862..12430983,12431028..12431092,12431465..12431579, 12432050..12432436,12433431..12433587) /gene="3N521" /locus_tag="3N521" /codon_start=1 /evidence=experimental /product="lipase, class 3 precursor family member (36.8 kD) (3N521)" /protein_id="17556062" /db_xref="GI:17556062" /db_xref="AceView/WormGenes:3N521" /db_xref="LocusID:176669" // > 8155_NC_003281 protein_id:17556080; Caenorhabditis elegans chromosome III, complete sequence. /gene="3N576"; intron(phase:2120,position:18,40,106,152); exon(number:5,size:17,22,66,46,136,sum:287); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(12488505..12488915,12489799..12489934, 12490305..12490503,12490758..12490822,12491124..12491176)) /gene="3N576" /locus_tag="3N576" /codon_start=1 /product="predicted CDS, lipase Complexed With N-Hexylphosphonate Ethyl Ester family member (3N576)" /protein_id="17556080" /db_xref="GI:17556080" /db_xref="AceView/WormGenes:3N576" /db_xref="LocusID:190072" // > 8170_NC_003281 protein_id:17556701; Caenorhabditis elegans chromosome III, complete sequence. /gene="3N783"; intron(phase:10022,position:14,66,113,232,280); exon(number:6,size:13,52,47,119,48,211,sum:490); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(12688153..12688192,12688248..12688402, 12688455..12688595,12689660..12690018,12692224..12692367, 12693609..12694242) /gene="3N783" /locus_tag="3N783" /codon_start=1 /product="spinster-like (3N783)" /protein_id="17556701" /db_xref="GI:17556701" /db_xref="AceView/WormGenes:3N783" /db_xref="LocusID:190952" // > 8219_NC_003281 protein_id:17554804; Caenorhabditis elegans chromosome III, complete sequence. /gene="snf-7"; intron(phase:0201000,position:72,184,317,403,445,548,578); exon(number:8,size:71,112,133,86,42,103,30,58,sum:635); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(13005019..13005231,13006142..13006479, 13007664..13008060,13008984..13009242,13009310..13009434, 13009480..13009788,13009837..13009926,13010421..13010597) /gene="snf-7" /locus_tag="3O99" /codon_start=1 /evidence=experimental /product="sodium:neurotransmitter symporter family member (71.2 kD) (snf-7)" /protein_id="17554804" /db_xref="GI:17554804" /db_xref="AceView/WormGenes:snf-7" /db_xref="LocusID:176723" // > 8258_NC_003281 protein_id:25150415; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O403"; intron(phase:02,position:19,66); exon(number:3,size:18,47,43,sum:108); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(13313539..13313592,13313653..13313795, 13313905..13314034) /gene="3O403" /locus_tag="3O403" /codon_start=1 /evidence=experimental /product="doc-1 related protein like (12.2 kD) (3O403)" /protein_id="25150415" /db_xref="GI:25150415" /db_xref="AceView/WormGenes:3O403" /db_xref="LocusID:176752" // > 8272_NC_003281 protein_id:17554876; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O479"; intron(phase:100,position:75,103,168); exon(number:4,size:74,28,65,100,sum:267); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(13388874..13389096,13389150..13389232, 13389299..13389493,13389878..13390180) /gene="3O479" /locus_tag="3O479" /codon_start=1 /evidence=experimental /product="isomerase (29.9 kD) (3O479)" /protein_id="17554876" /db_xref="GI:17554876" /db_xref="AceView/WormGenes:3O479" /db_xref="LocusID:176760" // > 8284_NC_003281 protein_id:17553468; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O518"; intron(phase:011,position:22,68,132); exon(number:4,size:21,46,64,71,sum:202); {splice:gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(13427190..13427404,13427851..13428042, 13428519..13428657,13429118..13429180)) /gene="3O518" /locus_tag="3O518" /codon_start=1 /product="nematode-specific EB region and pancreatic trypsin inhibitor precursor family member (3O518)" /protein_id="17553468" /db_xref="GI:17553468" /db_xref="AceView/WormGenes:3O518" /db_xref="LocusID:185812" // > 8298_NC_003281 protein_id:17555322; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O570"; intron(phase:2122202202,position:29,57,120,162,183,242,305,358,379,401); exon(number:11,size:28,28,63,42,21,59,63,53,21,22,8,sum:408); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(13480563..13480587,13481034..13481101, 13481397..13481457,13481574..13481732,13481777..13481967, 13482105..13482279,13482324..13482386,13482436..13482561, 13482931..13483120,13483169..13483251,13483506..13483591)) /gene="3O570" /locus_tag="3O570" /codon_start=1 /evidence=experimental /product="glycine receptor family member (3O570)" /protein_id="17555322" /db_xref="GI:17555322" /db_xref="AceView/WormGenes:3O570" /db_xref="LocusID:176778" // > 8304_NC_003281 protein_id:17555328; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O597"; intron(phase:22222200,position:51,89,183,221,287,319,530,602); exon(number:9,size:50,38,94,38,66,32,211,72,20,sum:621); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(13505641..13505792,13505836..13505949, 13505999..13506280,13506324..13506437,13506485..13506682, 13506732..13506827,13506876..13507506,13507553..13507768, 13507819..13507881) /gene="3O597" /locus_tag="3O597" /codon_start=1 /evidence=experimental /product="SPK containing protein family member (71.6 kD) (3O597)" /protein_id="17555328" /db_xref="GI:17555328" /db_xref="AceView/WormGenes:3O597" /db_xref="LocusID:176782" // > 8308_NC_003281 protein_id:17556552; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O630"; intron(phase:0010002,position:47,85,130,221,364,495,582); exon(number:8,size:46,38,45,91,143,131,87,106,sum:687); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(13539674..13539992,13540042..13540304, 13540360..13540752,13540797..13541225,13541466..13541737, 13541806..13541941,13542199..13542312,13542859..13542996)) /gene="3O630" /locus_tag="3O630" /codon_start=1 /evidence=experimental /product="fatty acid Coenzyme A ligase (75.8 kD) (3O630)" /protein_id="17556552" /db_xref="GI:17556552" /db_xref="AceView/WormGenes:3O630" /db_xref="LocusID:176785" // > 8313_NC_003281 protein_id:25150450; Caenorhabditis elegans chromosome III, complete sequence. /gene="3O652"; intron(phase:10,position:32,191); exon(number:3,size:31,159,175,sum:365); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS complement(join(13562950..13563477,13563717..13564192, 13564293..13564386)) /gene="3O652" /locus_tag="3O652" /codon_start=1 /evidence=experimental /product="fructose-1,6-bisphosphate aldolase, CE-1 isozyme (39.2 kD) (3O652)" /protein_id="25150450" /db_xref="GI:25150450" /db_xref="AceView/WormGenes:3O652" /db_xref="LocusID:176788" // > 8323_NC_003281 protein_id:17555056; Caenorhabditis elegans chromosome III, complete sequence. /gene="taf-9"; intron(phase:02,position:49,143); exon(number:3,size:48,94,41,sum:183); {splice:gtag,gtag} LOCUS NC_003281 13783268 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome III, complete sequence. ACCESSION NC_003281 VERSION NC_003281.3 GI:32566599 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 13783268) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 13783268) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..13783268 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="III" _HEADER_END_ CDS join(13623751..13623894,13623950..13624233, 13625248..13625371) /gene="taf-9" /locus_tag="3O715" /codon_start=1 /evidence=experimental /product="TBP-Associated transcription Factor family member (20.6 kD) (taf-9)" /protein_id="17555056" /db_xref="GI:17555056" /db_xref="AceView/WormGenes:taf-9" /db_xref="LocusID:176798" // > 8356_NC_003282 protein_id:17542202; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4A798"; intron(phase:0020,position:17,62,137,165); exon(number:5,size:16,45,75,28,16,sum:180); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(47678..47728,47791..47872,48276..48502, 48559..48693,48797..48844)) /gene="4A798" /locus_tag="4A798" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (4A798)" /protein_id="17542202" /db_xref="GI:17542202" /db_xref="AceView/WormGenes:4A798" /db_xref="LocusID:188120" // > 8400_NC_003282 protein_id:17539890; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B83"; intron(phase:001001201220001,position:17,76,104,189,298,361,400,436,454,540,607,689,750,793,876); exon(number:16,size:16,59,28,85,109,63,39,36,18,86,67,82,61,43,83,84,sum:959); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(328075..328122,328178..328354,328401..328485, 328531..328784,328828..329154,329202..329391, 329433..329550,329593..329698,330375..330429, 331382..331640,331684..331884,331926..332169, 333354..333536,333580..333708,333764..334013, 334059..334312) /gene="4B83" /locus_tag="4B83" /codon_start=1 /evidence=experimental /product="protein kinase and Protein of unknown function DUF23 family member (4B83)" /protein_id="17539890" /db_xref="GI:17539890" /db_xref="AceView/WormGenes:4B83" /db_xref="LocusID:184653" // > 8431_NC_003282 protein_id:17542798; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B265"; intron(phase:000001012,position:50,127,153,196,218,244,277,308,342); exon(number:10,size:49,77,26,43,22,26,33,31,34,73,sum:414); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(511223..511369,511454..511684,511734..511811, 511863..511991,512045..512110,512163..512241, 512292..512389,512438..512531,512579..512681, 512772..512991) /gene="4B265" /locus_tag="4B265" /codon_start=1 /evidence=experimental /product="putative nuclear protein family member (4B265)" /protein_id="17542798" /db_xref="GI:17542798" /db_xref="AceView/WormGenes:4B265" /db_xref="LocusID:176878" // > 8439_NC_003282 protein_id:17539606; Caenorhabditis elegans chromosome IV, complete sequence. /gene="mab-26"; intron(phase:211,position:33,150,318); exon(number:4,size:32,117,168,31,sum:348); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(559238..559335,565482..565831,566581..567084, 567752..567846) /gene="mab-26" /locus_tag="4B319" /codon_start=1 /evidence=experimental /product="male ABnormal MAB-26, Eph(F)riN (39.6 kD) (mab-26)" /protein_id="17539606" /db_xref="GI:17539606" /db_xref="AceView/WormGenes:mab-26" /db_xref="LocusID:176882" // > 8469_NC_003282 protein_id:17543700; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B509"; intron(phase:0100,position:57,124,200,249); exon(number:5,size:56,67,76,49,61,sum:309); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(756727..756894,757309..757510,757556..757782, 757831..757977,758468..758653) /gene="4B509" /locus_tag="4B509" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 5 transmembrane domains (4B509)" /protein_id="17543700" /db_xref="GI:17543700" /db_xref="AceView/WormGenes:4B509" /db_xref="LocusID:190321" // > 8472_NC_003282 protein_id:17540706; Caenorhabditis elegans chromosome IV, complete sequence. /gene="col-103"; intron(phase:0,position:49); exon(number:2,size:48,323,sum:371); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(762459..763430,763527..763670)) /gene="col-103" /locus_tag="4B516" /codon_start=1 /evidence=experimental /product="COLlagen structural gene (33.8 kD) (col-103)" /protein_id="17540706" /db_xref="GI:17540706" /db_xref="AceView/WormGenes:col-103" /db_xref="LocusID:176901" // > 8477_NC_003282 protein_id:17540718; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B535"; intron(phase:0011012,position:64,92,129,196,314,372,445); exon(number:8,size:63,28,37,67,118,58,73,97,sum:541); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(778790..778978,779027..779110,779747..779858, 779910..780110,780333..780685,782963..783137, 783187..783406,783836..784127) /gene="4B535" /locus_tag="4B535" /codon_start=1 /evidence=experimental /product="UDP-glucoronosyl/UDP-glucosyl transferase family member (4B535)" /protein_id="17540718" /db_xref="GI:17540718" /db_xref="AceView/WormGenes:4B535" /db_xref="LocusID:176904" // > 8483_NC_003282 protein_id:17543676; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B557"; intron(phase:22021202,position:3,109,179,208,255,286,313,347); exon(number:9,size:2,106,70,29,47,31,27,34,182,sum:528); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(800661..800668,800715..801032,801871..802078, 803396..803484,803823..803962,804072..804165, 805123..805201,805255..805358,805613..806159) /gene="4B557" /locus_tag="4B557" /codon_start=1 /product="predicted CDS, mitochondrial ribosomal protein L46 like (4B557)" /protein_id="17543676" /db_xref="GI:17543676" /db_xref="AceView/WormGenes:4B557" /db_xref="LocusID:190311" // > 8486_NC_003282 protein_id:17543692; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B586"; intron(phase:00,position:48,71); exon(number:3,size:47,23,84,sum:154); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(835783..836037,837411..837479, 838426..838566)) /gene="4B586" /locus_tag="4B586" /codon_start=1 /evidence=experimental /product="heat shock protein (4B586)" /protein_id="17543692" /db_xref="GI:17543692" /db_xref="AceView/WormGenes:4B586" /db_xref="LocusID:190317" // > 8498_NC_003282 protein_id:17540870; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B663"; intron(phase:2,position:31); exon(number:2,size:30,308,sum:338); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(907854..907945,908151..909075) /gene="4B663" /locus_tag="4B663" /codon_start=1 /product="cyclin-like F-box family member (4B663)" /protein_id="17540870" /db_xref="GI:17540870" /db_xref="AceView/WormGenes:4B663" /db_xref="LocusID:186555" // > 8500_NC_003282 protein_id:17540866; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B673"; intron(phase:110,position:707,864,1120); exon(number:4,size:706,157,256,300,sum:1419); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(914145..916263,916502..916972,917246..918012, 918602..919504) /gene="4B673" /locus_tag="4B673" /codon_start=1 /product="predicted CDS, polyprotein family member (4B673)" /protein_id="17540866" /db_xref="GI:17540866" /db_xref="AceView/WormGenes:4B673" /db_xref="LocusID:186553" // > 8509_NC_003282 protein_id:17543656; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4B760"; intron(phase:0012102,position:21,55,89,153,186,259,299); exon(number:8,size:20,34,34,64,33,73,40,81,sum:379); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(1006327..1006570,1007300..1007421, 1007543..1007760,1008513..1008610,1008859..1009051, 1009287..1009389,1009440..1009541,1009608..1009667)) /gene="4B760" /locus_tag="4B760" /codon_start=1 /evidence=experimental /product="putative prenylated protein of eukaryotic origin (42.0 kD) (4B760)" /protein_id="17543656" /db_xref="GI:17543656" /db_xref="AceView/WormGenes:4B760" /db_xref="LocusID:176920" // > 8566_NC_003282 protein_id:17544262; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4C173"; intron(phase:0,position:30); exon(number:2,size:29,45,sum:74); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(1407491..1407577,1407927..1408064) /gene="4C173" /locus_tag="4C173" /codon_start=1 /evidence=experimental /product="putative nuclear protein (8.3 kD) (4C173)" /protein_id="17544262" /db_xref="GI:17544262" /db_xref="AceView/WormGenes:4C173" /db_xref="LocusID:176949" // > 8567_NC_003282 protein_id:17544244; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4C174"; intron(phase:1,position:67); exon(number:2,size:66,42,sum:108); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(1408712..1408839,1409844..1410042)) /gene="4C174" /locus_tag="4C174" /codon_start=1 /evidence=experimental /product="RNA polymerase (12.0 kD) (4C174)" /protein_id="17544244" /db_xref="GI:17544244" /db_xref="AceView/WormGenes:4C174" /db_xref="LocusID:176950" // > 8571_NC_003282 protein_id:17544250; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4C188"; intron(phase:010102,position:37,69,92,132,172,218); exon(number:7,size:36,32,23,40,40,46,23,sum:240); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(1425487..1425556,1425604..1425743, 1425975..1426093,1426137..1426257,1426307..1426374, 1426423..1426519,1426777..1426884)) /gene="4C188" /locus_tag="4C188" /codon_start=1 /product="putative protein family member (4C188)" /protein_id="17544250" /db_xref="GI:17544250" /db_xref="AceView/WormGenes:4C188" /db_xref="LocusID:190737" // > 8605_NC_003282 protein_id:25148439; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4C431"; intron(phase:1120120,position:39,106,130,249,334,368,507); exon(number:8,size:38,67,24,119,85,34,139,27,sum:533); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(1660512..1660626,1660683..1660883,1661415..1661487, 1661570..1661924,1663119..1663374,1664440..1664542, 1666515..1666929,1667887..1667970) /gene="4C431" /locus_tag="4C431" /codon_start=1 /evidence=experimental /product="putative protein (4C431)" /protein_id="25148439" /db_xref="GI:25148439" /db_xref="AceView/WormGenes:4C431" /db_xref="LocusID:176976" // > 8641_NC_003282 protein_id:25148477; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4C771"; intron(phase:010012020,position:42,372,526,634,770,843,943,1001,1033); exon(number:10,size:41,330,154,108,136,73,100,58,32,87,sum:1119); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(1993096..1993218,1993653..1994643,1996466..1996926, 1999385..1999708,2000907..2001315,2002435..2002654, 2003896..2004193,2005645..2005820,2006546..2006639, 2007634..2007897) /gene="4C771" /locus_tag="4C771" /codon_start=1 /evidence=experimental /product="xeroderma Pigmentosum Group C (4C771)" /protein_id="25148477" /db_xref="GI:25148477" /db_xref="AceView/WormGenes:4C771" /db_xref="LocusID:177002" // > 8652_NC_003282 protein_id:17538732; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4C892"; intron(phase:002,position:2,102,126); exon(number:4,size:1,100,24,38,sum:163); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(2126334..2126448,2127063..2127136, 2127382..2127681,2128806..2128808)) /gene="4C892" /locus_tag="4C892" /codon_start=1 /evidence=experimental /product="putative protein (16.3 kD) (4C892)" /protein_id="17538732" /db_xref="GI:17538732" /db_xref="AceView/WormGenes:4C892" /db_xref="LocusID:177009" // > 8675_NC_003282 protein_id:17543188; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4D117"; intron(phase:01021,position:55,103,144,190,233); exon(number:6,size:54,48,41,46,43,50,sum:282); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(2349276..2349437,2349505..2349649,2349713..2349834, 2351514..2351653,2351757..2351884,2352930..2353081) /gene="4D117" /locus_tag="4D117" /codon_start=1 /product="predicted CDS, putative protein (4D117)" /protein_id="17543188" /db_xref="GI:17543188" /db_xref="AceView/WormGenes:4D117" /db_xref="LocusID:189678" // > 8704_NC_003282 protein_id:17544014; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4D331"; intron(phase:200,position:24,65,133); exon(number:4,size:23,41,68,58,sum:190); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(2570993..2571063,2571294..2571414,2571564..2571767, 2571858..2572034) /gene="4D331" /locus_tag="4D331" /codon_start=1 /product="predicted CDS, putative protein family member (4D331)" /protein_id="17544014" /db_xref="GI:17544014" /db_xref="AceView/WormGenes:4D331" /db_xref="LocusID:190538" // > 8708_NC_003282 protein_id:17544008; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4D353"; intron(phase:021100,position:32,56,83,105,135,210); exon(number:7,size:31,24,27,22,30,75,91,sum:300); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(2594661..2594753,2594800..2594873,2594982..2595061, 2595113..2595178,2595227..2595315,2595557..2595781, 2596002..2596277) /gene="4D353" /locus_tag="4D353" /codon_start=1 /product="predicted CDS, putative protein (4D353)" /protein_id="17544008" /db_xref="GI:17544008" /db_xref="AceView/WormGenes:4D353" /db_xref="LocusID:190535" // > 8731_NC_003282 protein_id:17543584; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4D532"; intron(phase:11001,position:22,169,249,404,448); exon(number:6,size:21,147,80,155,44,35,sum:482); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(2765981..2766087,2766395..2766527, 2768168..2768632,2769609..2769847,2770672..2771112, 2771675..2771738)) /gene="4D532" /locus_tag="4D532" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil domain (55.3 kD) (4D532)" /protein_id="17543584" /db_xref="GI:17543584" /db_xref="AceView/WormGenes:4D532" /db_xref="LocusID:177058" // > 8787_NC_003282 protein_id:17540898; Caenorhabditis elegans chromosome IV, complete sequence. /gene="gcy-23"; intron(phase:202100220,position:38,86,124,280,347,378,876,948,988); exon(number:10,size:37,48,38,156,67,31,498,72,40,152,sum:1139); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(3283011..3283469,3284132..3284249, 3284297..3284512,3285124..3286619,3287960..3288052, 3288099..3288298,3288351..3288817,3288870..3288985, 3289333..3289474,3289684..3289796)) /gene="gcy-23" /locus_tag="4E46" /codon_start=1 /evidence=experimental /product="guanylyl cyclase (gcy-23)" /protein_id="17540898" /db_xref="GI:17540898" /db_xref="AceView/WormGenes:gcy-23" /db_xref="LocusID:191652" // > 8804_NC_003282 protein_id:17540350; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E105"; intron(phase:01,position:29,59); exon(number:3,size:28,30,90,sum:148); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(3341295..3341378,3341459..3341549,3341670..3341941) /gene="4E105" /locus_tag="4E105" /codon_start=1 /product="predicted CDS, putative nuclear protein (4E105)" /protein_id="17540350" /db_xref="GI:17540350" /db_xref="AceView/WormGenes:4E105" /db_xref="LocusID:185646" // > 8852_NC_003282 protein_id:17543114; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E360"; intron(phase:022012,position:24,49,77,254,348,457); exon(number:7,size:23,25,28,177,94,109,98,sum:554); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(3594262..3594556,3595180..3595507, 3596177..3596459,3596932..3597460,3598101..3598184, 3598354..3598430,3598479..3598547)) /gene="4E360" /locus_tag="4E360" /codon_start=1 /evidence=experimental /product="protein from EUROIMAGE 1967720 (62.7 kD) (4E360)" /protein_id="17543114" /db_xref="GI:17543114" /db_xref="AceView/WormGenes:4E360" /db_xref="LocusID:177120" // > 8862_NC_003282 protein_id:17539462; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E405b"; intron(phase:2,position:98); exon(number:2,size:97,74,sum:171); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(3638356..3638648,3639599..3639821) /gene="4E405b" /locus_tag="4E405b" /codon_start=1 /product="putative protein (4E405b)" /protein_id="17539462" /db_xref="GI:17539462" /db_xref="AceView/WormGenes:4E405b" /db_xref="LocusID:183874" // > 8869_NC_003282 protein_id:17543074; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E461"; intron(phase:00020,position:24,49,111,164,262); exon(number:6,size:23,25,62,53,98,44,sum:305); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(3694944..3695012,3695060..3695134,3695215..3695400, 3695740..3695900,3696781..3697072,3698134..3698268) /gene="4E461" /locus_tag="4E461" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil domain (35.2 kD) (4E461)" /protein_id="17543074" /db_xref="GI:17543074" /db_xref="AceView/WormGenes:4E461" /db_xref="LocusID:177130" // > 8879_NC_003282 protein_id:17543106; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E514"; intron(phase:00200002001101,position:21,51,67,101,206,263,366,432,461,511,536,583,703,822); exon(number:15,size:20,30,16,34,105,57,103,66,29,50,25,47,120,119,167,sum:988); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(3748292..3748794,3749513..3749870, 3749917..3750275,3750562..3750702,3750755..3750830, 3750953..3751102,3752685..3752769,3753131..3753330, 3753375..3753683,3753737..3753907,3753952..3754266, 3754357..3754456,3754506..3754555,3754735..3754824, 3755361..3755420)) /gene="4E514" /locus_tag="4E514" /codon_start=1 /evidence=experimental /product="UDP-glucoronosyl/UDP-glucosyl transferase family member (4E514)" /protein_id="17543106" /db_xref="GI:17543106" /db_xref="AceView/WormGenes:4E514" /db_xref="LocusID:177139" // > 8885_NC_003282 protein_id:25153968; Caenorhabditis elegans chromosome IV, complete sequence. /gene="osm-3"; intron(phase:00001011,position:46,110,174,262,445,480,569,625); exon(number:9,size:45,64,64,88,183,35,89,56,47,sum:671); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(3796387..3796529,3796575..3796742, 3796878..3797145,3797190..3797293,3797342..3797891, 3798167..3798430,3798479..3798670,3798711..3798902, 3798953..3799087)) /gene="osm-3" /locus_tag="4E562" /codon_start=1 /evidence=experimental /product="OSMotic avoidance abnormal OSM-3, abnormal CAFfeine-resistance CAF-1, kinesin-like protein, motor subunit of heteromeric kinesin-II-related complex, required for sensory cilia differentiation (75.6 kD) (osm-3)" /protein_id="25153968" /db_xref="GI:25153968" /db_xref="AceView/WormGenes:osm-3" /db_xref="LocusID:177141" // > 8892_NC_003282 protein_id:17540056; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E603"; intron(phase:2222,position:35,119,149,194); exon(number:5,size:34,84,30,45,36,sum:229); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(3838900..3839003,3839531..3839782,3839826..3839915, 3840877..3841011,3841520..3841628) /gene="4E603" /locus_tag="4E603" /codon_start=1 /product="predicted CDS, putative protein (4E603)" /protein_id="17540056" /db_xref="GI:17540056" /db_xref="AceView/WormGenes:4E603" /db_xref="LocusID:185077" // > 8907_NC_003282 protein_id:32566297; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E693"; intron(phase:112010011220010,position:73,158,219,323,371,404,438,485,574,587,603,635,712,760,793); exon(number:16,size:72,85,61,104,48,33,34,47,89,13,16,32,77,48,33,40,sum:832); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(3926430..3926646,3926696..3926950,3926999..3927182, 3927815..3928124,3928179..3928323,3928681..3928778, 3928823..3928924,3929650..3929791,3929937..3930203, 3930249..3930288,3930385..3930432,3930480..3930573, 3930835..3931065,3931118..3931262,3931310..3931407, 3931452..3931574) /gene="4E693" /locus_tag="4E693" /codon_start=1 /product="predicted CDS, c-type lectin family member (4E693)" /protein_id="32566297" /db_xref="GI:32566297" /db_xref="AceView/WormGenes:4E693" /db_xref="LocusID:186388" // > 8912_NC_003282 protein_id:17543498; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E715"; intron(phase:01100102,position:44,116,199,459,556,604,637,677); exon(number:9,size:43,72,83,260,97,48,33,40,11,sum:687); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(3947488..3947616,3948429..3948645,3948745..3948993, 3949762..3950540,3950592..3950882,3951726..3951870, 3951920..3952017,3952063..3952184,3952229..3952262) /gene="4E715" /locus_tag="4E715" /codon_start=1 /product="predicted CDS, RNA-directed DNA polymerase and c-type lectin family member (4E715)" /protein_id="17543498" /db_xref="GI:17543498" /db_xref="AceView/WormGenes:4E715" /db_xref="LocusID:189946" // > 8937_NC_003282 protein_id:17542774; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E826"; intron(phase:22,position:35,74); exon(number:3,size:34,39,20,sum:93); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4062718..4062778,4062836..4062952, 4063000..4063103)) /gene="4E826" /locus_tag="4E826" /codon_start=1 /evidence=experimental /product="putative protein (4E826)" /protein_id="17542774" /db_xref="GI:17542774" /db_xref="AceView/WormGenes:4E826" /db_xref="LocusID:177164" // > 8961_NC_003282 protein_id:17541336; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E925"; intron(phase:021200102,position:32,69,85,149,181,261,310,344,384); exon(number:10,size:31,37,16,64,32,80,49,34,40,11,sum:394); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4154397..4154489,4154539..4154651,4154967..4155013, 4155109..4155301,4155349..4155442,4156133..4156372, 4156415..4156562,4156612..4156712,4156895..4157016, 4157065..4157098) /gene="4E925" /locus_tag="4E925" /codon_start=1 /evidence=experimental /product="putative protein family member (4E925)" /protein_id="17541336" /db_xref="GI:17541336" /db_xref="AceView/WormGenes:4E925" /db_xref="LocusID:187154" // > 8974_NC_003282 protein_id:17541234; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4E959"; intron(phase:121,position:8,124,209); exon(number:4,size:7,116,85,59,sum:267); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4194288..4194309,4195005..4195353,4195404..4195657, 4195715..4195893) /gene="4E959" /locus_tag="4E959" /codon_start=1 /product="UDP-N-acteylglucosamine pyrophosphorylase 1 (4E959)" /protein_id="17541234" /db_xref="GI:17541234" /db_xref="AceView/WormGenes:4E959" /db_xref="LocusID:187060" // > 8988_NC_003282 protein_id:17540182; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F33"; intron(phase:202,position:48,80,113); exon(number:4,size:47,32,33,25,sum:137); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4267630..4267772,4267837..4267930,4267976..4268076, 4268123..4268198) /gene="4F33" /locus_tag="4F33" /codon_start=1 /product="putative secreted or extracellular protein family member precursor (4F33)" /protein_id="17540182" /db_xref="GI:17540182" /db_xref="AceView/WormGenes:4F33" /db_xref="LocusID:185341" // > 9002_NC_003282 protein_id:17542752; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F95"; intron(phase:01220000122,position:71,102,137,187,266,294,358,490,516,604,628); exon(number:12,size:70,31,35,50,79,28,64,132,26,88,24,196,sum:823); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4326715..4326924,4327500..4327593,4327725..4327830, 4327901..4328050,4328492..4328726,4328776..4328859, 4328956..4329147,4329567..4329962,4330047..4330125, 4330187..4330451,4331190..4331261,4331304..4331892) /gene="4F95" /locus_tag="4F95" /codon_start=1 /evidence=experimental /product="putative protein family member, with at least 6 transmembrane domains, a coiled coil-4 domain, of bilaterial origin (4F95)" /protein_id="17542752" /db_xref="GI:17542752" /db_xref="AceView/WormGenes:4F95" /db_xref="LocusID:177198" // > 9034_NC_003282 protein_id:17544536; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F264"; intron(phase:000020,position:5,59,89,143,186,228); exon(number:7,size:4,54,30,54,43,42,26,sum:253); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4501953..4502033,4502113..4502236, 4502288..4502418,4502689..4502850,4504731..4504820, 4505368..4505529,4505703..4505714)) /gene="4F264" /locus_tag="4F264" /codon_start=1 /product="predicted CDS, receptor (4F264)" /protein_id="17544536" /db_xref="GI:17544536" /db_xref="AceView/WormGenes:4F264" /db_xref="LocusID:191241" // > 9039_NC_003282 protein_id:25149069; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F294"; intron(phase:2022,position:71,118,191,248); exon(number:5,size:70,47,73,57,46,sum:293); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4528836..4528974,4529232..4529402, 4529444..4529664,4529923..4530061,4530115..4530326)) /gene="4F294" /locus_tag="4F294" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (4F294)" /protein_id="25149069" /db_xref="GI:25149069" /db_xref="AceView/WormGenes:4F294" /db_xref="LocusID:177220" // > 9043_NC_003282 protein_id:17540054; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F332"; intron(phase:000,position:74,187,231); exon(number:4,size:73,113,44,42,sum:272); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4566017..4566145,4566191..4566322, 4566402..4566740,4566786..4567004)) /gene="4F332" /locus_tag="4F332" /codon_start=1 /product="predicted CDS, putative nuclear protein family member (4F332)" /protein_id="17540054" /db_xref="GI:17540054" /db_xref="AceView/WormGenes:4F332" /db_xref="LocusID:185067" // > 9055_NC_003282 protein_id:17540074; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F415"; intron(phase:2222,position:43,69,97,135); exon(number:5,size:42,26,28,38,21,sum:155); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4649870..4649997,4650064..4650141,4650191..4650274, 4650376..4650489,4650537..4650600) /gene="4F415" /locus_tag="4F415" /codon_start=1 /product="putative endoplasmic reticulum protein, with a transmembrane domain (4F415)" /protein_id="17540074" /db_xref="GI:17540074" /db_xref="AceView/WormGenes:4F415" /db_xref="LocusID:185108" // > 9062_NC_003282 protein_id:17540062; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F431"; intron(phase:2002,position:21,82,125,188); exon(number:5,size:20,61,43,63,49,sum:236); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4665421..4665482,4665540..4665720,4665767..4665895, 4666362..4666552,4667089..4667236) /gene="4F431" /locus_tag="4F431" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil domain, of eukaryotic origin (26.0 kD) (4F431)" /protein_id="17540062" /db_xref="GI:17540062" /db_xref="AceView/WormGenes:4F431" /db_xref="LocusID:177233" // > 9075_NC_003282 protein_id:32566327; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F501"; intron(phase:2,position:31); exon(number:2,size:30,303,sum:333); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4737561..4737652,4737822..4738731) /gene="4F501" /locus_tag="4F501" /codon_start=1 /product="predicted CDS, cyclin-like F-box family member (4F501)" /protein_id="32566327" /db_xref="GI:32566327" /db_xref="AceView/WormGenes:4F501" /db_xref="LocusID:184032" // > 9095_NC_003282 protein_id:25149159; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F568"; intron(phase:200202,position:96,202,372,520,569,703); exon(number:7,size:95,106,170,148,49,134,35,sum:737); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4802827..4802932,4802979..4803382, 4803848..4803992,4804041..4804486,4804812..4805321, 4805374..4805689,4806278..4806564)) /gene="4F568" /locus_tag="4F568" /codon_start=1 /evidence=experimental /product="n-acylaminoacyl-peptide hydrolase (82.4 kD) (4F568)" /protein_id="25149159" /db_xref="GI:25149159" /db_xref="AceView/WormGenes:4F568" /db_xref="LocusID:177251" // > 9101_NC_003282 protein_id:17540992; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F590"; intron(phase:002102,position:35,72,144,194,298,356); exon(number:7,size:34,37,72,50,104,58,47,sum:402); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4825516..4825657,4825702..4825877, 4825923..4826233,4826289..4826437,4826485..4826702, 4826751..4826861,4827160..4827261)) /gene="4F590" /locus_tag="4F590" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (44.8 kD) (4F590)" /protein_id="17540992" /db_xref="GI:17540992" /db_xref="AceView/WormGenes:4F590" /db_xref="LocusID:177255" // > 9106_NC_003282 protein_id:17542976; Caenorhabditis elegans chromosome IV, complete sequence. /gene="str-173"; intron(phase:01201,position:67,96,122,214,273); exon(number:6,size:66,29,26,92,59,22,sum:294); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4862181..4862378,4862652..4862739,4862786..4862864, 4863478..4863751,4863797..4863974,4864032..4864099) /gene="str-173" /locus_tag="4F627" /codon_start=1 /product="seven TM Receptor (str-173)" /protein_id="17542976" /db_xref="GI:17542976" /db_xref="AceView/WormGenes:str-173" /db_xref="LocusID:189459" // > 9109_NC_003282 protein_id:17542988; Caenorhabditis elegans chromosome IV, complete sequence. /gene="str-174"; intron(phase:012201,position:28,57,83,128,220,279); exon(number:7,size:27,29,26,45,92,59,23,sum:301); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(4872263..4872333,4872379..4872556, 4872608..4872881,4873543..4873677,4874242..4874320, 4874366..4874453,4874499..4874579)) /gene="str-174" /locus_tag="4F634" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-174)" /protein_id="17542988" /db_xref="GI:17542988" /db_xref="AceView/WormGenes:str-174" /db_xref="LocusID:189464" // > 9115_NC_003282 protein_id:17542282; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F671"; intron(phase:00022,position:198,250,434,574,646); exon(number:6,size:197,52,184,140,72,16,sum:661); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4906060..4906650,4906719..4906874,4906999..4907550, 4907681..4908102,4908235..4908450,4908496..4908544) /gene="4F671" /locus_tag="4F671" /codon_start=1 /evidence=experimental /product="putative membrane protein (4F671)" /protein_id="17542282" /db_xref="GI:17542282" /db_xref="AceView/WormGenes:4F671" /db_xref="LocusID:188277" // > 9119_NC_003282 protein_id:17542924; Caenorhabditis elegans chromosome IV, complete sequence. /gene="str-156"; intron(phase:0122001,position:30,61,87,131,178,222,281); exon(number:8,size:29,31,26,44,47,44,59,29,sum:309); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4913393..4913479,4913630..4913723,4913789..4913867, 4914008..4914139,4914188..4914326,4914378..4914509, 4914555..4914732,4914774..4914862) /gene="str-156" /locus_tag="4F679" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-156)" /protein_id="17542924" /db_xref="GI:17542924" /db_xref="AceView/WormGenes:str-156" /db_xref="LocusID:189416" // > 9123_NC_003282 protein_id:17542916; Caenorhabditis elegans chromosome IV, complete sequence. /gene="str-153"; intron(phase:1222001,position:66,95,143,188,236,280,339); exon(number:8,size:65,29,48,45,48,44,59,25,sum:363); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4934410..4934605,4934782..4934869,4934926..4935069, 4935263..4935397,4935439..4935580,4935800..4935931, 4936340..4936517,4936563..4936639) /gene="str-153" /locus_tag="4F699" /codon_start=1 /product="seven TM Receptor (str-153)" /protein_id="17542916" /db_xref="GI:17542916" /db_xref="AceView/WormGenes:str-153" /db_xref="LocusID:189413" // > 9125_NC_003282 protein_id:17542914; Caenorhabditis elegans chromosome IV, complete sequence. /gene="str-168"; intron(phase:012200,position:91,120,146,191,239,283); exon(number:7,size:90,29,26,45,48,44,71,sum:353); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(4939263..4939532,4939578..4939665,4939717..4939795, 4940181..4940315,4940377..4940518,4940568..4940699, 4941016..4941231) /gene="str-168" /locus_tag="4F703" /codon_start=1 /product="seven TM Receptor (str-168)" /protein_id="17542914" /db_xref="GI:17542914" /db_xref="AceView/WormGenes:str-168" /db_xref="LocusID:189412" // > 9161_NC_003282 protein_id:17538396; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4F852"; intron(phase:000,position:46,150,316); exon(number:4,size:45,104,166,104,sum:419); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5087020..5087334,5087387..5087884, 5087938..5088249,5088696..5088830)) /gene="4F852" /locus_tag="4F852" /codon_start=1 /evidence=experimental /product="isovaleryl-CoA dehydrogenase precursor; leucine catabolism pathway (45.6 kD) (4F852)" /protein_id="17538396" /db_xref="GI:17538396" /db_xref="AceView/WormGenes:4F852" /db_xref="LocusID:177281" // > 9180_NC_003282 protein_id:25153153; Caenorhabditis elegans chromosome IV, complete sequence. /gene="tni-4"; intron(phase:012,position:9,89,137); exon(number:4,size:8,80,48,58,sum:194); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(5204603..5204626,5205603..5205843,5206147..5206291, 5206726..5206900) /gene="tni-4" /locus_tag="4F971" /codon_start=1 /evidence=experimental /product="troponin I (23.1 kD) (tni-4)" /protein_id="25153153" /db_xref="GI:25153153" /db_xref="AceView/WormGenes:tni-4" /db_xref="LocusID:177295" // > 9198_NC_003282 protein_id:17540208; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G31"; intron(phase:20,position:13,39); exon(number:3,size:12,26,159,sum:197); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(5266861..5266898,5266950..5267025,5267084..5267563) /gene="4G31" /locus_tag="4G31" /codon_start=1 /product="putative nuclear protein, with a coiled coil-4 domain (4G31)" /protein_id="17540208" /db_xref="GI:17540208" /db_xref="AceView/WormGenes:4G31" /db_xref="LocusID:185395" // > 9201_NC_003282 protein_id:17540224; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G34"; intron(phase:2,position:66); exon(number:2,size:65,58,sum:123); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5270367..5270541,5270695..5270891)) /gene="4G34" /locus_tag="4G34" /codon_start=1 /product="predicted CDS, putative protein (4G34)" /protein_id="17540224" /db_xref="GI:17540224" /db_xref="AceView/WormGenes:4G34" /db_xref="LocusID:185401" // > 9206_NC_003282 protein_id:17544556; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G62"; intron(phase:2102,position:85,215,267,348); exon(number:5,size:84,130,52,81,21,sum:368); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5295967..5296030,5296076..5296320, 5296366..5296520,5296638..5297026,5297229..5297482)) /gene="4G62" /locus_tag="4G62" /codon_start=1 /product="tau-tubulin kinase like (4G62)" /protein_id="17544556" /db_xref="GI:17544556" /db_xref="AceView/WormGenes:4G62" /db_xref="LocusID:191293" // > 9219_NC_003282 protein_id:17540330; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G123"; intron(phase:22,position:57,165); exon(number:3,size:56,108,113,sum:277); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(5361008..5361177,5361246..5361569,5361732..5362071) /gene="4G123" /locus_tag="4G123" /codon_start=1 /product="putative protein family member, with at least 4 transmembrane domains, of bilaterial origin (4G123)" /protein_id="17540330" /db_xref="GI:17540330" /db_xref="AceView/WormGenes:4G123" /db_xref="LocusID:185643" // > 9226_NC_003282 protein_id:17540346; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G149"; intron(phase:2,position:139); exon(number:2,size:138,100,sum:238); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(5385315..5385730,5385775..5386075) /gene="4G149" /locus_tag="4G149" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein, with a coiled coil-4 domain (4G149)" /protein_id="17540346" /db_xref="GI:17540346" /db_xref="AceView/WormGenes:4G149" /db_xref="LocusID:260206" // > 9260_NC_003282 protein_id:25149360; Caenorhabditis elegans chromosome IV, complete sequence. /gene="fkh-7"; intron(phase:00202000110,position:168,238,360,446,554,609,658,681,725,776,803); exon(number:12,size:167,70,122,86,108,55,49,23,44,51,27,41,sum:843); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(5584676..5585176,5601642..5601851,5602264..5602631, 5602833..5603088,5606108..5606433,5606550..5606712, 5606865..5607011,5607824..5607892,5608304..5608436, 5608490..5608642,5608786..5608865,5609556..5609681) /gene="fkh-7" /locus_tag="4G373" /codon_start=1 /evidence=experimental /product="ForKHead transcription factor family member (fkh-7)" /protein_id="25149360" /db_xref="GI:25149360" /db_xref="AceView/WormGenes:fkh-7" /db_xref="LocusID:177340" // > 9261_NC_003282 protein_id:17539104; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G376"; intron(phase:1021,position:39,276,308,365); exon(number:5,size:38,237,32,57,27,sum:391); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5612141..5612223,5612350..5612519, 5612597..5612694,5613289..5613998,5614478..5614592)) /gene="4G376" /locus_tag="4G376" /codon_start=1 /evidence=experimental /product="putative protein, with at least 3 transmembrane domains (4G376)" /protein_id="17539104" /db_xref="GI:17539104" /db_xref="AceView/WormGenes:4G376" /db_xref="LocusID:183349" // > 9276_NC_003282 protein_id:25149377; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4G462"; intron(phase:20202021,position:7,54,96,164,223,296,354,466); exon(number:9,size:6,47,42,68,59,73,58,112,53,sum:518); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5696123..5696283,5696886..5697220, 5697993..5698168,5698224..5698440,5698709..5698887, 5699030..5699231,5699414..5699541,5703020..5703158, 5703250..5703269)) /gene="4G462" /locus_tag="4G462" /codon_start=1 /evidence=experimental /product="putative protein (58.3 kD) (4G462)" /protein_id="25149377" /db_xref="GI:25149377" /db_xref="AceView/WormGenes:4G462" /db_xref="LocusID:177348" // > 9285_NC_003282 protein_id:32565814; Caenorhabditis elegans chromosome IV, complete sequence. /gene="nhr-46"; intron(phase:01010,position:95,146,305,440,494); exon(number:6,size:94,51,159,135,54,35,sum:528); {splice:gcag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5747743..5747850,5747896..5748056, 5748107..5748512,5748664..5749139,5749321..5749474, 5749600..5749881)) /gene="nhr-46" /locus_tag="4G512" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (59.1 kD) (nhr-46)" /protein_id="32565814" /db_xref="GI:32565814" /db_xref="AceView/WormGenes:nhr-46" /db_xref="LocusID:177350" // > 9314_NC_003282 protein_id:17542024; Caenorhabditis elegans chromosome IV, complete sequence. /gene="rps-25"; intron(phase:0,position:58); exon(number:2,size:57,60,sum:117); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(5947124..5947306,5947420..5947590)) /gene="rps-25" /locus_tag="4G712" /codon_start=1 /evidence=experimental /product="ribosomal Protein, Small subunit (12.9 kD) (rps-25)" /protein_id="17542024" /db_xref="GI:17542024" /db_xref="AceView/WormGenes:rps-25" /db_xref="LocusID:177365" // > 9356_NC_003282 protein_id:25145410; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H38"; intron(phase:1211122211,position:31,96,109,136,180,228,304,350,469,509); exon(number:11,size:30,65,13,27,44,48,76,46,119,40,23,sum:531); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(6272734..6272804,6272917..6273036, 6273088..6273443,6273699..6273836,6273967..6274194, 6274245..6274389,6274476..6274607,6274662..6274742, 6274861..6274898,6275308..6275503,6275613..6275703)) /gene="4H38" /locus_tag="4H38" /codon_start=1 /evidence=experimental /product="solute carrier family 7 member 6, possibly N-myristoylated (4H38)" /protein_id="25145410" /db_xref="GI:25145410" /db_xref="AceView/WormGenes:4H38" /db_xref="LocusID:177388" // > 9368_NC_003282 protein_id:17544142; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H85"; intron(phase:00210,position:37,80,134,188,251); exon(number:6,size:36,43,54,54,63,72,sum:322); {splice:gcag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(6321993..6322100,6322157..6322285,6322338..6322501, 6322810..6322970,6323021..6323208,6323258..6323476) /gene="4H85" /locus_tag="4H85" /codon_start=1 /product="predicted CDS, TruA like (4H85)" /protein_id="17544142" /db_xref="GI:17544142" /db_xref="AceView/WormGenes:4H85" /db_xref="LocusID:260252" // > 9390_NC_003282 protein_id:25149511; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H190"; intron(phase:00100,position:66,111,159,287,370); exon(number:6,size:65,45,48,128,83,12,sum:381); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(6424673..6424711,6424761..6425009, 6425089..6425471,6425520..6425664,6425749..6425883, 6425933..6426127)) /gene="4H190" /locus_tag="4H190" /codon_start=1 /evidence=experimental /product="acid precursor family member (43.0 kD) (4H190)" /protein_id="25149511" /db_xref="GI:25149511" /db_xref="AceView/WormGenes:4H190" /db_xref="LocusID:177407" // > 9396_NC_003282 protein_id:25149518; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H251"; intron(phase:122200010200,position:82,130,156,185,224,289,386,424,440,467,534,598); exon(number:13,size:81,48,26,29,39,65,97,38,16,27,67,64,58,sum:655); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(6481386..6481629,6481735..6481879,6482304..6482381, 6483919..6484005,6484053..6484167,6484296..6484490, 6484994..6485284,6485330..6485444,6485500..6485546, 6485628..6485710,6485764..6485962,6486079..6486270, 6486677..6486853) /gene="4H251" /locus_tag="4H251" /codon_start=1 /evidence=experimental /product="tyrosinase family member (4H251)" /protein_id="25149518" /db_xref="GI:25149518" /db_xref="AceView/WormGenes:4H251" /db_xref="LocusID:177411" // > 9422_NC_003282 protein_id:17540258; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H365"; intron(phase:0,position:68); exon(number:2,size:67,63,sum:130); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(6599872..6600072,6600290..6600481) /gene="4H365" /locus_tag="4H365" /codon_start=1 /product="putative protein (4H365)" /protein_id="17540258" /db_xref="GI:17540258" /db_xref="AceView/WormGenes:4H365" /db_xref="LocusID:185444" // > 9425_NC_003282 protein_id:17539844; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H370"; intron(phase:220021,position:27,65,100,199,246,290); exon(number:7,size:26,38,35,99,47,44,35,sum:324); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(6604163..6604269,6604683..6604813, 6604861..6605003,6605053..6605349,6605630..6605732, 6605779..6605892,6606094..6606173)) /gene="4H370" /locus_tag="4H370" /codon_start=1 /evidence=experimental /product="putative protein, with at least 7 transmembrane domains, of eukaryotic origin (35.8 kD) (4H370)" /protein_id="17539844" /db_xref="GI:17539844" /db_xref="AceView/WormGenes:4H370" /db_xref="LocusID:177424" // > 9426_NC_003282 protein_id:17539846; Caenorhabditis elegans chromosome IV, complete sequence. /gene="drh-1"; intron(phase:0121210021110110010,position:31,89,111,218,258,288,344,371,400,443,520,555,626,667,737,834,943,972,992); exon(number:20,size:30,58,22,107,40,30,56,27,29,43,77,35,71,41,70,97,109,29,20,46,sum:1037); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(6607547..6607687,6607740..6607798, 6607862..6607949,6608001..6608327,6608381..6608670, 6608718..6608927,6608974..6609097,6610579..6610790, 6610834..6610938,6611006..6611236,6611285..6611412, 6611462..6611550,6611601..6611681,6611724..6611890, 6611947..6612035,6612365..6612485,6612544..6612863, 6612914..6612980,6613025..6613199,6613249..6613338)) /gene="drh-1" /locus_tag="4H372" /codon_start=1 /evidence=experimental /product="Dicer-Related Helicase, a DExH-box helicase (119.2 kD) (drh-1)" /protein_id="17539846" /db_xref="GI:17539846" /db_xref="AceView/WormGenes:drh-1" /db_xref="LocusID:177425" // > 9432_NC_003282 protein_id:17538360; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H401"; intron(phase:20202201010,position:29,105,175,213,252,298,361,418,481,529,611); exon(number:12,size:28,76,70,38,39,46,63,57,63,48,82,46,sum:656); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(6635082..6635167,6635406..6635631,6635706..6635917, 6635963..6636074,6636127..6636245,6636292..6636429, 6636478..6636664,6636709..6636880,6637140..6637327, 6637375..6637519,6637574..6637818,6637869..6638009) /gene="4H401" /locus_tag="4H401" /codon_start=1 /evidence=experimental /product="spermine synthase (4H401)" /protein_id="17538360" /db_xref="GI:17538360" /db_xref="AceView/WormGenes:4H401" /db_xref="LocusID:177431" // > 9438_NC_003282 protein_id:17544084; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H500"; intron(phase:00,position:32,81); exon(number:3,size:31,49,46,sum:126); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(6738757..6738897,6738940..6739086, 6740180..6740272)) /gene="4H500" /locus_tag="4H500" /codon_start=1 /product="putative secreted or extracellular protein family member precursor (4H500)" /protein_id="17544084" /db_xref="GI:17544084" /db_xref="AceView/WormGenes:4H500" /db_xref="LocusID:190645" // > 9495_NC_003282 protein_id:17538522; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H802"; intron(phase:20202220,position:47,103,167,308,442,481,564,593); exon(number:9,size:46,56,64,141,134,39,83,29,89,sum:681); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7037073..7037342,7037440..7037524, 7037570..7037818,7037866..7037982,7038028..7038431, 7038478..7038898,7038944..7039137,7039184..7039349, 7039398..7039537)) /gene="4H802" /locus_tag="4H802" /codon_start=1 /evidence=experimental /product="component of oligomeric Golgi complex 2; brefeldin A-sensitive, LDLC related peripheral Golgi protein, required for normal Golgi function; contains an N myristoylation domain (78.6 kD) (4H802)" /protein_id="17538522" /db_xref="GI:17538522" /db_xref="AceView/WormGenes:4H802" /db_xref="LocusID:177473" // > 9496_NC_003282 protein_id:17538506; Caenorhabditis elegans chromosome IV, complete sequence. /gene="klp-18"; intron(phase:202100,position:84,448,569,632,744,884); exon(number:7,size:83,364,121,63,112,140,49,sum:932); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7040202..7040452,7040499..7041588,7041636..7042000, 7042052..7042239,7042289..7042623,7042673..7043092, 7043138..7043287) /gene="klp-18" /locus_tag="4H807" /codon_start=1 /evidence=experimental /product="kinesin-like protein (105.8 kD) (klp-18)" /protein_id="17538506" /db_xref="GI:17538506" /db_xref="AceView/WormGenes:klp-18" /db_xref="LocusID:177474" // > 9498_NC_003282 protein_id:17538504; Caenorhabditis elegans chromosome IV, complete sequence. /gene="nhr-105"; intron(phase:11100210,position:21,86,110,218,260,289,358,411); exon(number:9,size:20,65,24,108,42,29,69,53,45,sum:455); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7050153..7050213,7050926..7051120,7051172..7051243, 7051539..7051861,7051943..7052068,7052116..7052204, 7052252..7052457,7053009..7053166,7053218..7053355) /gene="nhr-105" /locus_tag="4H817" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (nhr-105)" /protein_id="17538504" /db_xref="GI:17538504" /db_xref="AceView/WormGenes:nhr-105" /db_xref="LocusID:177476" // > 9504_NC_003282 protein_id:17543380; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H843"; intron(phase:210,position:91,121,169); exon(number:4,size:90,30,48,46,sum:214); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7081030..7081301,7081504..7081592,7081642..7081784, 7081914..7082054) /gene="4H843" /locus_tag="4H843" /codon_start=1 /product="predicted CDS, putative protein, with at least 2 transmembrane domains (4H843)" /protein_id="17543380" /db_xref="GI:17543380" /db_xref="AceView/WormGenes:4H843" /db_xref="LocusID:189846" // > 9510_NC_003282 protein_id:32566360; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H871"; intron(phase:22001200,position:21,78,104,127,159,172,211,238); exon(number:9,size:20,57,26,23,32,13,39,27,71,sum:308); {splice:gtga,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7105822..7105883,7105922..7106092,7106135..7106210, 7106255..7106323,7106446..7106542,7107103..7107142, 7107201..7107315,7107374..7107454,7107508..7107723) /gene="4H871" /locus_tag="4H871" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member of ancient origin (4H871)" /protein_id="32566360" /db_xref="GI:32566360" /db_xref="AceView/WormGenes:4H871" /db_xref="LocusID:191183" // > 9517_NC_003282 protein_id:17539034; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4H892"; intron(phase:1111,position:20,66,98,116); exon(number:5,size:19,46,32,18,21,sum:136); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7130694..7130758,7130812..7130865, 7131120..7131215,7131263..7131400,7131788..7131845)) /gene="4H892" /locus_tag="4H892" /codon_start=1 /product="putative protein (4H892)" /protein_id="17539034" /db_xref="GI:17539034" /db_xref="AceView/WormGenes:4H892" /db_xref="LocusID:183209" // > 9546_NC_003282 protein_id:17539514; Caenorhabditis elegans chromosome IV, complete sequence. /gene="elo-3"; intron(phase:0010,position:18,58,306,399); exon(number:5,size:17,40,248,93,37,sum:435); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7237718..7237768,7237819..7237938,7238580..7239324, 7239381..7239658,7239773..7239886) /gene="elo-3" /locus_tag="4I3" /codon_start=1 /product="fatty acid ELOngation (elo-3)" /protein_id="17539514" /db_xref="GI:17539514" /db_xref="AceView/WormGenes:elo-3" /db_xref="LocusID:183948" // > 9556_NC_003282 protein_id:17538488; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I20"; intron(phase:2110,position:42,70,108,148); exon(number:5,size:41,28,38,40,27,sum:174); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7262227..7262310,7262398..7262516, 7262779..7262892,7262940..7263022,7263102..7263226)) /gene="4I20" /locus_tag="4I20" /codon_start=1 /product="putative protein (4I20)" /protein_id="17538488" /db_xref="GI:17538488" /db_xref="AceView/WormGenes:4I20" /db_xref="LocusID:182330" // > 9557_NC_003282 protein_id:17538478; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I39"; intron(phase:1,position:31); exon(number:2,size:30,52,sum:82); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7282282..7282372,7282919..7283076) /gene="4I39" /locus_tag="4I39" /codon_start=1 /product="putative protein (4I39)" /protein_id="17538478" /db_xref="GI:17538478" /db_xref="AceView/WormGenes:4I39" /db_xref="LocusID:182325" // > 9585_NC_003282 protein_id:17538292; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I214"; intron(phase:0000,position:151,197,343,396); exon(number:5,size:150,46,146,53,70,sum:465); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7449332..7449544,7450061..7450219, 7450262..7450699,7450747..7450884,7450984..7451433)) /gene="4I214" /locus_tag="4I214" /codon_start=1 /evidence=experimental /product="prickle (53.7 kD) (4I214)" /protein_id="17538292" /db_xref="GI:17538292" /db_xref="AceView/WormGenes:4I214" /db_xref="LocusID:177515" // > 9589_NC_003282 protein_id:17540662; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I232"; intron(phase:2222,position:64,160,193,250); exon(number:5,size:63,96,33,57,58,sum:307); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7466907..7467081,7467131..7467301, 7467351..7467449,7467924..7468211,7468262..7468452)) /gene="4I232" /locus_tag="4I232" /codon_start=1 /product="putative protein (4I232)" /protein_id="17540662" /db_xref="GI:17540662" /db_xref="AceView/WormGenes:4I232" /db_xref="LocusID:186328" // > 9620_NC_003282 protein_id:17540130; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I353"; intron(phase:20110,position:9,36,111,154,211); exon(number:6,size:8,27,75,43,57,84,sum:294); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7588921..7588946,7589003..7589081,7589196..7589421, 7589833..7589961,7590011..7590180,7590229..7590483) /gene="4I353" /locus_tag="4I353" /codon_start=1 /product="predicted CDS, putative nuclear protein (4I353)" /protein_id="17540130" /db_xref="GI:17540130" /db_xref="AceView/WormGenes:4I353" /db_xref="LocusID:185209" // > 9667_NC_003282 protein_id:17539008; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I560"; intron(phase:10210,position:24,47,69,221,285); exon(number:6,size:23,23,22,152,64,40,sum:324); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7794978..7795100,7795194..7795384, 7795439..7795893,7795948..7796015,7796071..7796138, 7796186..7796255)) /gene="4I560" /locus_tag="4I560" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil-4 domain (4I560)" /protein_id="17539008" /db_xref="GI:17539008" /db_xref="AceView/WormGenes:4I560" /db_xref="LocusID:183189" // > 9680_NC_003282 protein_id:17542230; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I637"; intron(phase:220022,position:23,49,88,203,389,448); exon(number:7,size:22,26,39,115,186,59,110,sum:557); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(7870854..7870921,7870971..7871048,7871097..7871211, 7871349..7871693,7871863..7872422,7872469..7872645, 7872693..7873023) /gene="4I637" /locus_tag="4I637" /codon_start=1 /product="SH2 motif and protein kinase family member (4I637)" /protein_id="17542230" /db_xref="GI:17542230" /db_xref="AceView/WormGenes:4I637" /db_xref="LocusID:188160" // > 9700_NC_003282 protein_id:32565821; Caenorhabditis elegans chromosome IV, complete sequence. /gene="ceh-19"; intron(phase:102,position:11,46,77); exon(number:4,size:10,35,31,54,sum:130); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7953631..7953793,7954489..7954583, 7954636..7954739,7954792..7954822)) /partial /gene="ceh-19" /locus_tag="4I718" /codon_start=1 /evidence=experimental /product="C.Elegans Homeobox (ceh-19)" /protein_id="32565821" /db_xref="GI:32565821" /db_xref="AceView/WormGenes:ceh-19" /db_xref="LocusID:177590" // > 9704_NC_003282 protein_id:32566371; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I740"; intron(phase:0,position:22); exon(number:2,size:21,184,sum:205); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7975486..7976040,7976223..7976285)) /gene="4I740" /locus_tag="4I740" /codon_start=1 /evidence=experimental /product="immunodominant hypodermal antigen-related family member (23.7 kD) (4I740)" /protein_id="32566371" /db_xref="GI:32566371" /db_xref="AceView/WormGenes:4I740" /db_xref="LocusID:177593" // > 9708_NC_003282 protein_id:17540784; Caenorhabditis elegans chromosome IV, complete sequence. /gene="mec-17"; intron(phase:2201,position:27,73,105,187); exon(number:5,size:26,46,32,82,76,sum:262); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(7984003..7984232,7984306..7984552, 7984594..7984687,7985487..7985624,7987062..7987141)) /gene="mec-17" /locus_tag="4I750" /codon_start=1 /evidence=experimental /product="MEChanosensory abnormality MEC-17, putative cytoplasmic protein of bilaterial origin (29.8 kD) (mec-17)" /protein_id="17540784" /db_xref="GI:17540784" /db_xref="AceView/WormGenes:mec-17" /db_xref="LocusID:177596" // > 9721_NC_003282 protein_id:17543360; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I863"; intron(phase:20,position:41,94); exon(number:3,size:40,53,40,sum:133); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8100533..8100654,8101083..8101239,8101289..8101411) /gene="4I863" /locus_tag="4I863" /codon_start=1 /product="lifeguard family member (4I863)" /protein_id="17543360" /db_xref="GI:17543360" /db_xref="AceView/WormGenes:4I863" /db_xref="LocusID:189842" // > 9730_NC_003282 protein_id:17540416; Caenorhabditis elegans chromosome IV, complete sequence. /gene="sph-1"; intron(phase:1020,position:40,68,107,237); exon(number:5,size:39,28,39,130,33,sum:269); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(8132284..8132385,8132432..8132819, 8133285..8133403,8133460..8133542,8133593..8133710)) /gene="sph-1" /locus_tag="4I896" /codon_start=1 /evidence=experimental /product="SyaptoPHysin (sph-1)" /protein_id="17540416" /db_xref="GI:17540416" /db_xref="AceView/WormGenes:sph-1" /db_xref="LocusID:177608" // > 9736_NC_003282 protein_id:17538254; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I919"; intron(phase:0101,position:27,74,393,503); exon(number:5,size:26,47,319,110,69,sum:571); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8152438..8152515,8152584..8152725,8152973..8153928, 8154007..8154337,8154436..8154644) /gene="4I919" /locus_tag="4I919" /codon_start=1 /evidence=experimental /product="fatty acid amide hydrolase precursor family member (4I919)" /protein_id="17538254" /db_xref="GI:17538254" /db_xref="AceView/WormGenes:4I919" /db_xref="LocusID:177612" // > 9745_NC_003282 protein_id:17538536; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4I977"; intron(phase:211020122,position:24,105,161,187,275,380,431,473,557); exon(number:10,size:23,81,56,26,88,105,51,42,84,2,sum:558); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8206757..8206827,8207001..8207242,8207323..8207490, 8207677..8207753,8207899..8208164,8208215..8208527, 8208785..8208938,8208986..8209112,8210573..8210824, 8210916..8210922) /gene="4I977" /locus_tag="4I977" /codon_start=1 /evidence=experimental /product="tunicate retinoic acid-inducible modular protease like (4I977)" /protein_id="17538536" /db_xref="GI:17538536" /db_xref="AceView/WormGenes:4I977" /db_xref="LocusID:182375" // > 9755_NC_003282 protein_id:17542710; Caenorhabditis elegans chromosome IV, complete sequence. /gene="vit-6"; intron(phase:2000,position:32,186,1502,1591); exon(number:5,size:31,154,1316,89,60,sum:1650); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8261160..8261254,8261346..8261805,8261863..8265810, 8265859..8266125,8266172..8266354) /gene="vit-6" /locus_tag="4J31" /codon_start=1 /evidence=experimental /product="yolk protein VITellogenin structural gene (vit-6)" /protein_id="17542710" /db_xref="GI:17542710" /db_xref="AceView/WormGenes:vit-6" /db_xref="LocusID:177619" // > 9769_NC_003282 protein_id:17540164; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J89"; intron(phase:0000,position:18,51,109,137); exon(number:5,size:17,33,58,28,15,sum:151); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8324841..8324891,8326083..8326181,8326225..8326398, 8326782..8326865,8326911..8326958) /gene="4J89" /locus_tag="4J89" /codon_start=1 /product="putative nuclear protein (4J89)" /protein_id="17540164" /db_xref="GI:17540164" /db_xref="AceView/WormGenes:4J89" /db_xref="LocusID:185329" // > 9798_NC_003282 protein_id:25149968; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J213"; intron(phase:10222,position:76,143,173,211,323); exon(number:6,size:75,67,30,38,112,21,sum:343); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8447194..8447419,8447476..8447675,8447772..8447863, 8448072..8448185,8448506..8448841,8448891..8448954) /gene="4J213" /locus_tag="4J213" /codon_start=1 /evidence=experimental /product="putative protein family member, with at least 5 transmembrane domains (39.8 kD) (4J213)" /protein_id="25149968" /db_xref="GI:25149968" /db_xref="AceView/WormGenes:4J213" /db_xref="LocusID:177645" // > 9799_NC_003282 protein_id:17542124; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J214"; intron(phase:212202,position:39,79,131,156,338,389); exon(number:7,size:38,40,52,25,182,51,79,sum:467); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(8449446..8449683,8449736..8449890, 8449944..8450487,8450533..8450607,8450826..8450982, 8451027..8451145,8451625..8451740)) /gene="4J214" /locus_tag="4J214" /codon_start=1 /evidence=experimental /product="aminotransferase (51.6 kD) (4J214)" /protein_id="17542124" /db_xref="GI:17542124" /db_xref="AceView/WormGenes:4J214" /db_xref="LocusID:177646" // > 9823_NC_003282 protein_id:25150023; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J357"; intron(phase:000010200200002,position:12,65,337,412,459,494,548,586,651,714,769,880,1018,1062,1119); exon(number:16,size:11,53,272,75,47,35,54,38,65,63,55,111,138,44,57,9,sum:1127); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8585971..8586003,8589892..8590050,8590258..8591073, 8591117..8591341,8591396..8591537,8591623..8591726, 8591799..8591962,8592009..8592120,8592168..8592362, 8592432..8592622,8592706..8592868,8592919..8593251, 8593324..8593737,8593783..8593914,8593979..8594151, 8594206..8594233) /gene="4J357" /locus_tag="4J357" /codon_start=1 /evidence=experimental /product="cation transporting ATPase, N-terminal and E1-E2 ATPase-associated region and haloacid dehalogenase-like hydrolase family member (126.4 kD) (4J357)" /protein_id="25150023" /db_xref="GI:25150023" /db_xref="AceView/WormGenes:4J357" /db_xref="LocusID:177664" // > 9836_NC_003282 protein_id:25145343; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J410"; intron(phase:121001200,position:28,56,106,144,188,233,287,358,404); exon(number:10,size:27,28,50,38,44,45,54,71,46,91,sum:494); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(8645570..8645845,8645891..8646028, 8646619..8646829,8646875..8647037,8647161..8647296, 8647341..8647472,8647521..8647633,8647699..8647847, 8647956..8648040,8648087..8648168)) /gene="4J410" /locus_tag="4J410" /codon_start=1 /evidence=experimental /product="cytochrome p450 2A15 family member (57.7 kD) (4J410)" /protein_id="25145343" /db_xref="GI:25145343" /db_xref="AceView/WormGenes:4J410" /db_xref="LocusID:183602" // > 9852_NC_003282 protein_id:17541040; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J481"; intron(phase:0022,position:54,90,119,210); exon(number:5,size:53,36,29,91,65,sum:274); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8718352..8718510,8718635..8718742,8718785..8718873, 8718934..8719206,8720201..8720396) /gene="4J481" /locus_tag="4J481" /codon_start=1 /product="predicted CDS, putative protein (4J481)" /protein_id="17541040" /db_xref="GI:17541040" /db_xref="AceView/WormGenes:4J481" /db_xref="LocusID:186762" // > 9857_NC_003282 protein_id:17539954; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J500"; intron(phase:101010,position:17,35,59,183,242,278); exon(number:7,size:16,18,24,124,59,36,130,sum:407); {splice:gtag,gtag,gtag,gtag,gtag,gtat} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(8735788..8736180,8736224..8736330, 8736376..8736553,8736599..8736969,8739092..8739164, 8739214..8739266,8739314..8739362)) /gene="4J500" /locus_tag="4J500" /codon_start=1 /evidence=experimental /product="polynucleotide 5'-kinase 3'-phosphatase (46.2 kD) (4J500)" /protein_id="17539954" /db_xref="GI:17539954" /db_xref="AceView/WormGenes:4J500" /db_xref="LocusID:177681" // > 9875_NC_003282 protein_id:17542590; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J583"; intron(phase:11111,position:19,103,152,221,250); exon(number:6,size:18,84,49,69,29,25,sum:274); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8816336..8816390,8816626..8816877,8817073..8817219, 8817341..8817547,8817782..8817868,8817916..8817992) /gene="4J583" /locus_tag="4J583" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (4J583)" /protein_id="17542590" /db_xref="GI:17542590" /db_xref="AceView/WormGenes:4J583" /db_xref="LocusID:177693" // > 9882_NC_003282 protein_id:17542294; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J607"; intron(phase:1222,position:23,92,233,340); exon(number:5,size:22,69,141,107,106,sum:445); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8840713..8840779,8841062..8841269,8841319..8841741, 8841860..8842180,8842242..8842560) /gene="4J607" /locus_tag="4J607" /codon_start=1 /evidence=experimental /product="putative protein, with 5 coiled coil domains, of bilaterial origin (4J607)" /protein_id="17542294" /db_xref="GI:17542294" /db_xref="AceView/WormGenes:4J607" /db_xref="LocusID:177698" // > 9890_NC_003282 protein_id:17538612; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J641"; intron(phase:0100221001,position:17,50,84,118,273,299,336,402,435,474); exon(number:11,size:16,33,34,34,155,26,37,66,33,39,43,sum:516); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8874671..8874718,8874816..8874915,8874966..8875066, 8875112..8875213,8875501..8875967,8876011..8876088, 8876134..8876243,8876287..8876483,8876528..8876626, 8876672..8876789,8876834..8876964) /gene="4J641" /locus_tag="4J641" /codon_start=1 /product="dopa decarboxylase (4J641)" /protein_id="17538612" /db_xref="GI:17538612" /db_xref="AceView/WormGenes:4J641" /db_xref="LocusID:182464" // > 9912_NC_003282 protein_id:17539426; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J765"; intron(phase:1020002000,position:18,46,75,162,225,290,376,480,602,634); exon(number:11,size:17,28,29,87,63,65,86,104,122,32,93,sum:726); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(8993136..8993187,8993957..8994039,8994261..8994349, 8995090..8995348,8995393..8995581,8995646..8995840, 8995954..8996213,8996257..8996566,8996613..8996978, 8997036..8997131,9000399..9000680) /gene="4J765" /locus_tag="4J765" /codon_start=1 /evidence=experimental /product="putative membrane protein family member (82.5 kD) (4J765)" /protein_id="17539426" /db_xref="GI:17539426" /db_xref="AceView/WormGenes:4J765" /db_xref="LocusID:177718" // > 9929_NC_003282 protein_id:17538378; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J862"; intron(phase:02,position:35,60); exon(number:3,size:34,25,14,sum:73); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9095891..9095933,9095982..9096058, 9096114..9096215)) /gene="4J862" /locus_tag="4J862" /codon_start=1 /evidence=experimental /product="protein conserved among bilaterial animals, negatively regulates the voltage-sensitivity of the IClnN2-induced current driven by the icl-1 gene just downstream in same operon (8.1 kD) (4J862)" /protein_id="17538378" /db_xref="GI:17538378" /db_xref="AceView/WormGenes:4J862" /db_xref="LocusID:177731" // > 9931_NC_003282 protein_id:17538370; Caenorhabditis elegans chromosome IV, complete sequence. /gene="ccp-31A1"; intron(phase:002000,position:32,103,114,147,187,395); exon(number:7,size:31,71,11,33,40,208,28,sum:422); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9101759..9101845,9102307..9102930, 9103044..9103163,9103211..9103307,9103355..9103389, 9103486..9103698,9103745..9103837)) /gene="ccp-31A1" /locus_tag="4J866" /codon_start=1 /evidence=experimental /product="cytochrome P450 (ccp-31A1)" /protein_id="17538370" /db_xref="GI:17538370" /db_xref="AceView/WormGenes:ccp-31A1" /db_xref="LocusID:177733" // > 9946_NC_003282 protein_id:17539236; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J955"; intron(phase:02102020,position:15,78,118,200,262,427,479,517); exon(number:9,size:14,63,40,82,62,165,52,38,98,sum:614); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(9186801..9186842,9187044..9187234,9187377..9187495, 9187658..9187902,9189249..9189436,9189781..9190273, 9190326..9190483,9190618..9190729,9190811..9191107) /gene="4J955" /locus_tag="4J955" /codon_start=1 /product="predicted CDS, serine protease family member (4J955)" /protein_id="17539236" /db_xref="GI:17539236" /db_xref="AceView/WormGenes:4J955" /db_xref="LocusID:183503" // > 9947_NC_003282 protein_id:17539238; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J956"; intron(phase:00,position:65,133); exon(number:3,size:64,68,91,sum:223); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9191666..9191941,9192077..9192280, 9192416..9192607)) /gene="4J956" /locus_tag="4J956" /codon_start=1 /evidence=experimental /product="putative protein (4J956)" /protein_id="17539238" /db_xref="GI:17539238" /db_xref="AceView/WormGenes:4J956" /db_xref="LocusID:177742" // > 9952_NC_003282 protein_id:17542946; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4J992"; intron(phase:111,position:48,102,128); exon(number:4,size:47,54,26,50,sum:177); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9230348..9230499,9230543..9230620, 9230706..9230867,9230963..9231104)) /gene="4J992" /locus_tag="4J992" /codon_start=1 /product="4-Hydroxybutyrate coenzyme A transferase (4J992)" /protein_id="17542946" /db_xref="GI:17542946" /db_xref="AceView/WormGenes:4J992" /db_xref="LocusID:189427" // > 9953_NC_003282 protein_id:17542950; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K5"; intron(phase:22121120,position:19,78,141,204,248,311,368,414); exon(number:9,size:18,59,63,63,44,63,57,46,62,sum:475); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(9236985..9237040,9237224..9237400,9237450..9237637, 9237702..9237891,9238041..9238171,9238222..9238410, 9239089..9239260,9239676..9239811,9241012..9241200) /gene="4K5" /locus_tag="4K5" /codon_start=1 /evidence=experimental /product="protein ET like family member (53.0 kD) (4K5)" /protein_id="17542950" /db_xref="GI:17542950" /db_xref="AceView/WormGenes:4K5" /db_xref="LocusID:177745" // > 9954_NC_003282 protein_id:17542952; Caenorhabditis elegans chromosome IV, complete sequence. /gene="rab-28"; intron(phase:000020,position:38,67,89,144,194,227); exon(number:7,size:37,29,22,55,50,33,22,sum:248); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9242209..9242277,9242351..9242447, 9242612..9242763,9242834..9242998,9243270..9243335, 9243410..9243496,9243873..9243983)) /gene="rab-28" /locus_tag="4K6" /codon_start=1 /product="RAB family member (rab-28)" /protein_id="17542952" /db_xref="GI:17542952" /db_xref="AceView/WormGenes:rab-28" /db_xref="LocusID:189429" // > 9985_NC_003282 protein_id:17542448; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K101"; intron(phase:0100,position:18,42,115,163); exon(number:5,size:17,24,73,48,59,sum:221); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(9337294..9337344,9337391..9337463,9337512..9337729, 9337815..9337958,9338082..9338261) /gene="4K101" /locus_tag="4K101" /codon_start=1 /evidence=experimental /product="mitochondrial substrate carrier (25.1 kD) (4K101)" /protein_id="17542448" /db_xref="GI:17542448" /db_xref="AceView/WormGenes:4K101" /db_xref="LocusID:177763" // > 9989_NC_003282 protein_id:17542456; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K108"; intron(phase:0012210,position:37,342,380,574,771,966,1011); exon(number:8,size:36,305,38,194,197,195,45,28,sum:1038); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9343720..9343806,9343873..9344006, 9344057..9344640,9344986..9345576,9345630..9346212, 9346264..9346378,9346437..9347351,9349016..9349123)) /gene="4K108" /locus_tag="4K108" /codon_start=1 /evidence=experimental /product="putative protein, with at least 6 transmembrane domains, of eukaryotic origin (4K108)" /protein_id="17542456" /db_xref="GI:17542456" /db_xref="AceView/WormGenes:4K108" /db_xref="LocusID:177766" // > 10022_NC_003282 protein_id:17538966; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K268"; intron(phase:10,position:66,94); exon(number:3,size:65,28,98,sum:191); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9505591..9505887,9505977..9506059, 9506114..9506309)) /gene="4K268" /locus_tag="4K268" /codon_start=1 /product="transthyretin-like precursor family member (4K268)" /protein_id="17538966" /db_xref="GI:17538966" /db_xref="AceView/WormGenes:4K268" /db_xref="LocusID:183147" // > 10025_NC_003282 protein_id:17538944; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K278"; intron(phase:000110,position:59,83,101,144,174,205); exon(number:7,size:58,24,18,43,30,31,41,sum:245); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(9511110..9511235,9512067..9512158, 9512205..9512294,9512379..9512508,9512575..9512628, 9512686..9512757,9512848..9513021)) /gene="4K278" /locus_tag="4K278" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein of bilaterial origin (4K278)" /protein_id="17538944" /db_xref="GI:17538944" /db_xref="AceView/WormGenes:4K278" /db_xref="LocusID:183139" // > 10062_NC_003282 protein_id:17541670; Caenorhabditis elegans chromosome IV, complete sequence. /gene="nhr-38"; intron(phase:1100021,position:49,74,122,172,208,233,295); exon(number:8,size:48,25,48,50,36,25,62,31,sum:325); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(9710841..9710985,9711033..9711107,9711152..9711294, 9711485..9711634,9711677..9711784,9711832..9711908, 9711955..9712139,9712189..9712283) /gene="nhr-38" /locus_tag="4K475" /codon_start=1 /product="nuclear Hormone Receptor (nhr-38)" /protein_id="17541670" /db_xref="GI:17541670" /db_xref="AceView/WormGenes:nhr-38" /db_xref="LocusID:191720" // > 10078_NC_003282 protein_id:17542404; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K553"; intron(phase:00222,position:23,81,106,159,216); exon(number:6,size:22,58,25,53,57,18,sum:233); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(9789445..9789510,9789782..9789955,9790064..9790140, 9790371..9790529,9790586..9790756,9790816..9790870) /gene="4K553" /locus_tag="4K553" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (4K553)" /protein_id="17542404" /db_xref="GI:17542404" /db_xref="AceView/WormGenes:4K553" /db_xref="LocusID:188476" // > 10116_NC_003282 protein_id:32566392; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K739"; intron(phase:000,position:46,72,136); exon(number:4,size:45,26,64,69,sum:204); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(9974681..9974815,9974867..9974944,9974990..9975181, 9975229..9975438) /gene="4K739" /locus_tag="4K739" /codon_start=1 /product="putative secreted or extracellular protein precursor (4K739)" /protein_id="32566392" /db_xref="GI:32566392" /db_xref="AceView/WormGenes:4K739" /db_xref="LocusID:183555" // > 10148_NC_003282 protein_id:17538432; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4K852"; intron(phase:10,position:87,152); exon(number:3,size:86,65,25,sum:176); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(10088461..10088538,10088581..10088774, 10089564..10089822)) /gene="4K852" /locus_tag="4K852" /codon_start=1 /product="esophageal gland cell secretory protein 11 like family member (4K852)" /protein_id="17538432" /db_xref="GI:17538432" /db_xref="AceView/WormGenes:4K852" /db_xref="LocusID:182231" // > 10178_NC_003282 protein_id:17538758; Caenorhabditis elegans chromosome IV, complete sequence. /gene="abt-1"; intron(phase:020001222221111202010020,position:24,57,121,151,190,230,466,544,583,642,675,699,752,797,840,877,914,962,1023,1059,1098,1199,1257,1398); exon(number:25,size:23,33,64,30,39,40,236,78,39,59,33,24,53,45,43,37,37,48,61,36,39,101,58,141,32,sum:1429); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(10206208..10206306,10206860..10207280, 10207465..10207640,10207776..10208078,10208122..10208237, 10208292..10208400,10208453..10208633,10208681..10208826, 10208997..10209105,10209156..10209267,10209316..10209444, 10209489..10209623,10209670..10209828,10209871..10209941, 10210085..10210183,10210227..10210403,10210447..10210563, 10210610..10210843,10211113..10211821,10211870..10211990, 10212038..10212154,10212198..10212287,10212991..10213180, 10213402..10213502,10213669..10213737)) /gene="abt-1" /locus_tag="4K970" /codon_start=1 /product="ATP-binding cassette transporter (abt-1)" /protein_id="17538758" /db_xref="GI:17538758" /db_xref="AceView/WormGenes:abt-1" /db_xref="LocusID:182849" // > 10192_NC_003282 protein_id:17539550; Caenorhabditis elegans chromosome IV, complete sequence. /gene="daf-14"; intron(phase:1200,position:4,51,102,273); exon(number:5,size:3,47,51,171,15,sum:287); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10253643..10253652,10254066..10254207, 10254255..10254405,10254472..10254984,10255525..10255572) /gene="daf-14" /locus_tag="4L19" /codon_start=1 /evidence=experimental /product="abnormal DAuer Formation DAF-14, dauer larva development regulatory Smad protein (32.7 kD) (daf-14)" /protein_id="17539550" /db_xref="GI:17539550" /db_xref="AceView/WormGenes:daf-14" /db_xref="LocusID:177908" // > 10217_NC_003282 protein_id:17541876; Caenorhabditis elegans chromosome IV, complete sequence. /gene="lpd-8"; intron(phase:112,position:13,34,60); exon(number:4,size:12,21,26,163,sum:222); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10387410..10387446,10387490..10387552, 10387599..10387677,10387742..10388231) /gene="lpd-8" /locus_tag="4L153" /codon_start=1 /evidence=experimental /product="HIRA interacting protein like, LiPid Depleted LPD-8 (lpd-8)" /protein_id="17541876" /db_xref="GI:17541876" /db_xref="AceView/WormGenes:lpd-8" /db_xref="LocusID:177928" // > 10227_NC_003282 protein_id:17539802; Caenorhabditis elegans chromosome IV, complete sequence. /gene="ins-1"; intron(phase:21,position:9,60); exon(number:3,size:8,51,50,sum:109); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10436732..10436757,10436844..10436995, 10437819..10437970) /gene="ins-1" /locus_tag="4L201" /codon_start=1 /evidence=experimental /exception="unclassified translation discrepancy" /product="INSulin related (12.4 kD) (ins-1)" /protein_id="17539802" /db_xref="GI:17539802" /db_xref="AceView/WormGenes:ins-1" /db_xref="LocusID:177936" // > 10235_NC_003282 protein_id:17539630; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L236"; intron(phase:022,position:46,235,294); exon(number:4,size:45,189,59,106,sum:399); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(10473617..10473935,10473990..10474166, 10474211..10474779,10474886..10475020)) /gene="4L236" /locus_tag="4L236" /codon_start=1 /product="SH2 motif and protein kinase family member (4L236)" /protein_id="17539630" /db_xref="GI:17539630" /db_xref="AceView/WormGenes:4L236" /db_xref="LocusID:184053" // > 10242_NC_003282 protein_id:17538416; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L286"; intron(phase:21,position:37,55); exon(number:3,size:36,18,17,sum:71); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(10523413..10523465,10523510..10523562, 10524014..10524123)) /gene="4L286" /locus_tag="4L286" /codon_start=1 /product="putative mitochondrial protein (4L286)" /protein_id="17538416" /db_xref="GI:17538416" /db_xref="AceView/WormGenes:4L286" /db_xref="LocusID:182120" // > 10246_NC_003282 protein_id:17542260; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L298"; intron(phase:0010,position:59,160,240,294); exon(number:5,size:58,101,80,54,192,sum:485); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(10536714..10537292,10537339..10537499, 10537554..10537794,10537837..10538139,10538489..10538662)) /gene="4L298" /locus_tag="4L298" /codon_start=1 /product="solute carrier family 23 member 2 (4L298)" /protein_id="17542260" /db_xref="GI:17542260" /db_xref="AceView/WormGenes:4L298" /db_xref="LocusID:188243" // > 10248_NC_003282 protein_id:17542264; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L321"; intron(phase:02,position:34,275); exon(number:3,size:33,241,106,sum:380); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10547066..10547164,10547233..10547957, 10548132..10548450) /gene="4L321" /locus_tag="4L321" /codon_start=1 /evidence=experimental /product="putative protein family member (4L321)" /protein_id="17542264" /db_xref="GI:17542264" /db_xref="AceView/WormGenes:4L321" /db_xref="LocusID:188244" // > 10254_NC_003282 protein_id:17539160; Caenorhabditis elegans chromosome IV, complete sequence. /gene="efn-2"; intron(phase:201,position:32,97,214); exon(number:4,size:31,65,117,24,sum:237); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10576367..10576461,10577118..10577310, 10577499..10577850,10577932..10578005) /gene="efn-2" /locus_tag="4L341" /codon_start=1 /evidence=experimental /product="Eph(F)riN (efn-2)" /protein_id="17539160" /db_xref="GI:17539160" /db_xref="AceView/WormGenes:efn-2" /db_xref="LocusID:177949" // > 10262_NC_003282 protein_id:17541728; Caenorhabditis elegans chromosome IV, complete sequence. /gene="ptr-14"; intron(phase:010120120,position:37,61,147,335,361,527,720,776,854); exon(number:10,size:36,24,86,188,26,166,193,56,78,24,sum:877); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10615479..10615586,10617180..10617252, 10617480..10617736,10617855..10618419,10618465..10618543, 10618618..10619113,10619170..10619749,10619859..10620027, 10620077..10620308,10620622..10620696) /gene="ptr-14" /locus_tag="4L385" /codon_start=1 /evidence=experimental /product="PaTched Related (ptr-14)" /protein_id="17541728" /db_xref="GI:17541728" /db_xref="AceView/WormGenes:ptr-14" /db_xref="LocusID:177951" // > 10263_NC_003282 protein_id:17541874; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L388"; intron(phase:10212112001001120100111,position:18,58,75,120,168,194,258,302,349,393,442,464,546,584,653,795,856,902,1272,1312,1369,1546,1600); exon(number:24,size:17,40,17,45,48,26,64,44,47,44,49,22,82,38,69,142,61,46,370,40,57,177,54,4,sum:1603); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(10621823..10621836,10621888..10622049, 10622124..10622654,10622717..10622888,10622933..10623052, 10623144..10624252,10624297..10624435,10624482..10624662, 10624838..10625264,10625316..10625522,10625568..10625682, 10625737..10625982,10626034..10626098,10626145..10626292, 10626340..10626471,10626513..10626651,10626723..10626855, 10626899..10627090,10627145..10627221,10627268..10627412, 10627603..10627736,10628204..10628256,10628307..10628425, 10628741..10628792)) /gene="4L388" /locus_tag="4L388" /codon_start=1 /evidence=experimental /product="putative protein family member of bilaterial origin (4L388)" /protein_id="17541874" /db_xref="GI:17541874" /db_xref="AceView/WormGenes:4L388" /db_xref="LocusID:177952" // > 10267_NC_003282 protein_id:25150462; Caenorhabditis elegans chromosome IV, complete sequence. /gene="fmo-11"; intron(phase:120000,position:53,134,180,327,467,502); exon(number:7,size:52,81,46,147,140,35,32,sum:533); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10662025..10662181,10662299..10662542, 10662593..10662728,10662909..10663349,10663400..10663819, 10663868..10663972,10664018..10664116) /gene="fmo-11" /locus_tag="4L427" /codon_start=1 /evidence=experimental /product="flavin-containing monooxygenase (61.2 kD) (fmo-11)" /protein_id="25150462" /db_xref="GI:25150462" /db_xref="AceView/WormGenes:fmo-11" /db_xref="LocusID:177954" // > 10284_NC_003282 protein_id:17544488; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L503"; intron(phase:0,position:113); exon(number:2,size:112,60,sum:172); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(10737471..10737806,10737850..10738032) /gene="4L503" /locus_tag="4L503" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (18.1 kD) (4L503)" /protein_id="17544488" /db_xref="GI:17544488" /db_xref="AceView/WormGenes:4L503" /db_xref="LocusID:177967" // > 10352_NC_003282 protein_id:17540192; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L815"; intron(phase:01012101,position:88,127,171,215,344,411,472,577); exon(number:9,size:87,39,44,44,129,67,61,105,21,sum:597); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(11049577..11049837,11050383..11050500, 11050546..11050676,11050901..11051033,11051081..11051468, 11051513..11051712,11051759..11051940,11052005..11052320, 11052364..11052428) /gene="4L815" /locus_tag="4L815" /codon_start=1 /product="predicted CDS, protein tyrosine phosphatase family member (4L815)" /protein_id="17540192" /db_xref="GI:17540192" /db_xref="AceView/WormGenes:4L815" /db_xref="LocusID:185379" // > 10358_NC_003282 protein_id:17541546; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L844"; intron(phase:100000,position:43,99,150,327,525,582); exon(number:7,size:42,56,51,177,198,57,66,sum:647); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11078796..11078996,11079046..11079216, 11079269..11079862,11079906..11080436,11080487..11080639, 11080686..11080852,11080902..11081028)) /gene="4L844" /locus_tag="4L844" /codon_start=1 /evidence=experimental /product="autophagy (72.4 kD) (4L844)" /protein_id="17541546" /db_xref="GI:17541546" /db_xref="AceView/WormGenes:4L844" /db_xref="LocusID:178005" // > 10379_NC_003282 protein_id:17539646; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4L909"; intron(phase:0001,position:36,107,180,583); exon(number:5,size:35,71,73,403,62,sum:644); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(11143328..11143432,11143523..11143735, 11143808..11144026,11144073..11145282,11145389..11145576) /gene="4L909" /locus_tag="4L909" /codon_start=1 /evidence=experimental /product="putative nuclear protein (4L909)" /protein_id="17539646" /db_xref="GI:17539646" /db_xref="AceView/WormGenes:4L909" /db_xref="LocusID:178018" // > 10413_NC_003282 protein_id:17540626; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M59"; intron(phase:11000010221112112,position:38,70,122,167,293,324,385,547,626,754,911,980,1099,1160,1189,1258,1429); exon(number:18,size:37,32,52,45,126,31,61,162,79,128,157,69,119,61,29,69,171,19,sum:1447); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(11286196..11286307,11287788..11287883, 11287930..11288084,11288133..11288267,11288322..11288699, 11289279..11289371,11289583..11289766,11289826..11290310, 11290356..11290594,11290646..11291029,11291281..11291750, 11291799..11292005,11292056..11292412,11292460..11292643, 11292691..11292776,11292828..11293034,11293165..11293678, 11294239..11294296) /gene="4M59" /locus_tag="4M59" /codon_start=1 /evidence=experimental /product="AMOP domain containing protein family member (4M59)" /protein_id="17540626" /db_xref="GI:17540626" /db_xref="AceView/WormGenes:4M59" /db_xref="LocusID:178037" // > 10425_NC_003282 protein_id:17538232; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M96"; intron(phase:0201021001,position:29,78,135,167,300,349,550,663,701,799); exon(number:11,size:28,49,57,32,133,49,201,113,38,98,38,sum:836); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11329741..11329856,11329909..11330203, 11330253..11330366,11330424..11330761,11330809..11331410, 11331470..11331618,11331767..11332164,11332209..11332305, 11332347..11332515,11332566..11332714,11332765..11332848)) /gene="4M96" /locus_tag="4M96" /codon_start=1 /evidence=experimental /product="squamous cell carcinoma antigen recognized by T-cells 3 like (95.4 kD) (4M96)" /protein_id="17538232" /db_xref="GI:17538232" /db_xref="AceView/WormGenes:4M96" /db_xref="LocusID:178053" // > 10431_NC_003282 protein_id:17540942; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M142"; intron(phase:2,position:26); exon(number:2,size:25,151,sum:176); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11378151..11378604,11379249..11379325)) /gene="4M142" /locus_tag="4M142" /codon_start=1 /product="predicted CDS, cyclin-like F-box family member (4M142)" /protein_id="17540942" /db_xref="GI:17540942" /db_xref="AceView/WormGenes:4M142" /db_xref="LocusID:186669" // > 10439_NC_003282 protein_id:32566413; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M186"; intron(phase:100100,position:71,136,224,247,296,383); exon(number:7,size:70,65,88,23,49,87,88,sum:470); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11422657..11422923,11422971..11423231, 11423283..11423428,11423488..11423557,11423603..11423866, 11423917..11424110,11424258..11424468)) /gene="4M186" /locus_tag="4M186" /codon_start=1 /product="protein kinase and SH2 motif family member (4M186)" /protein_id="32566413" /db_xref="GI:32566413" /db_xref="AceView/WormGenes:4M186" /db_xref="LocusID:184809" // > 10455_NC_003282 protein_id:17539784; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M320"; intron(phase:1102122,position:20,119,160,248,301,328,529); exon(number:8,size:19,99,41,88,53,27,201,139,sum:667); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11554467..11554884,11554995..11555597, 11556224..11556305,11556548..11556705,11556756..11557021, 11557662..11557783,11557835..11558131,11558180..11558237)) /gene="4M320" /locus_tag="4M320" /codon_start=1 /product="putative cytoplasmic protein family member (4M320)" /protein_id="17539784" /db_xref="GI:17539784" /db_xref="AceView/WormGenes:4M320" /db_xref="LocusID:184391" // > 10491_NC_003282 protein_id:17539568; Caenorhabditis elegans chromosome IV, complete sequence. /gene="dpy-20"; intron(phase:0002,position:76,122,162,199); exon(number:5,size:75,46,40,37,161,sum:359); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11697474..11697957,11698169..11698281, 11698332..11698451,11698745..11698882,11699575..11699799)) /gene="dpy-20" /locus_tag="4M462" /codon_start=1 /evidence=experimental /product="BED finger containing protein, DumPY : shorter than wild-type DPY-20 (dpy-20)" /protein_id="17539568" /db_xref="GI:17539568" /db_xref="AceView/WormGenes:dpy-20" /db_xref="LocusID:178105" // > 10533_NC_003282 protein_id:17544670; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M704"; intron(phase:0222,position:93,126,194,249); exon(number:5,size:92,33,68,55,36,sum:284); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(11940579..11940687,11941188..11941352, 11941396..11941599,11941656..11941756,11942086..11942361)) /gene="4M704" /locus_tag="4M704" /codon_start=1 /product="short-chain reductase family member (4M704)" /protein_id="17544670" /db_xref="GI:17544670" /db_xref="AceView/WormGenes:4M704" /db_xref="LocusID:191434" // > 10545_NC_003282 protein_id:17544624; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M780"; intron(phase:202,position:62,122,288); exon(number:4,size:61,60,166,57,sum:344); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(12014259..12014430,12014480..12014979, 12015224..12015401,12015451..12015635)) /gene="4M780" /locus_tag="4M780" /codon_start=1 /product="lipase, class 2 family member (4M780)" /protein_id="17544624" /db_xref="GI:17544624" /db_xref="AceView/WormGenes:4M780" /db_xref="LocusID:191364" // > 10563_NC_003282 protein_id:17539746; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M854"; intron(phase:0002,position:42,255,561,719); exon(number:5,size:41,213,306,158,58,sum:776); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(12089451..12089625,12089940..12090415, 12091271..12092188,12092580..12093218,12093268..12093390)) /gene="4M854" /locus_tag="4M854" /codon_start=1 /evidence=experimental /product="cleavage polyadenylation factor specificity (4M854)" /protein_id="17539746" /db_xref="GI:17539746" /db_xref="AceView/WormGenes:4M854" /db_xref="LocusID:178150" // > 10570_NC_003282 protein_id:17541570; Caenorhabditis elegans chromosome IV, complete sequence. /gene="aly-3"; intron(phase:1101,position:70,110,141,183); exon(number:5,size:69,40,31,42,58,sum:240); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12123289..12123496,12123547..12123666, 12123714..12123805,12124222..12124348,12124399..12124574) /gene="aly-3" /locus_tag="4M889" /codon_start=1 /evidence=experimental /product="RNA and export factor binding protein, ALY family (aly-3)" /protein_id="17541570" /db_xref="GI:17541570" /db_xref="AceView/WormGenes:aly-3" /db_xref="LocusID:178157" // > 10572_NC_003282 protein_id:32566423; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M899"; intron(phase:02120,position:45,82,120,194,225); exon(number:6,size:44,37,38,74,31,47,sum:271); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12129484..12129615,12131924..12132036, 12132791..12132903,12133027..12133249,12134609..12134699, 12134753..12134896) /gene="4M899" /locus_tag="4M899" /codon_start=1 /evidence=experimental /product="putative protein family member (31.3 kD) (4M899)" /protein_id="32566423" /db_xref="GI:32566423" /db_xref="AceView/WormGenes:4M899" /db_xref="LocusID:178159" // > 10580_NC_003282 protein_id:32566429; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M931"; intron(phase:0,position:49); exon(number:2,size:48,170,sum:218); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12168227..12168370,12168421..12168933) /gene="4M931" /locus_tag="4M931" /codon_start=1 /product="putative protein (4M931)" /protein_id="32566429" /db_xref="GI:32566429" /db_xref="AceView/WormGenes:4M931" /db_xref="LocusID:184715" // > 10589_NC_003282 protein_id:17543216; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4M992"; intron(phase:2111020,position:31,84,103,154,213,257,284); exon(number:8,size:30,53,19,51,59,44,27,32,sum:315); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(12227889..12227987,12228034..12228112, 12228162..12228295,12228748..12228923,12228968..12229120, 12229174..12229230,12229458..12229615,12229665..12229756)) /gene="4M992" /locus_tag="4M992" /codon_start=1 /product="serpentine receptor Sre, putative G protein-coupled chemoreceptor family member (4M992)" /protein_id="17543216" /db_xref="GI:17543216" /db_xref="AceView/WormGenes:4M992" /db_xref="LocusID:189745" // > 10619_NC_003282 protein_id:25150706; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N135"; intron(phase:2101111,position:7,74,109,195,218,373,549); exon(number:8,size:6,67,35,86,23,155,176,58,sum:606); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12362037..12362056,12363014..12363213, 12363262..12363365,12363852..12364110,12368370..12368438, 12368759..12369223,12369273..12369800,12370426..12370601) /gene="4N135" /locus_tag="4N135" /codon_start=1 /evidence=experimental /exception="unclassified translation discrepancy" /product="yeast CCR4 carbon catabolite repression 4-like, an endonuclease/exonuclease/phosphatase family member with Leucine Rich Repeats (68.6 kD) (4N135)" /protein_id="25150706" /db_xref="GI:25150706" /db_xref="AceView/WormGenes:4N135" /db_xref="LocusID:178184" // > 10623_NC_003282 protein_id:17540034; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N143"; intron(phase:0,position:87); exon(number:2,size:86,147,sum:233); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12380079..12380336,12380389..12380832) /gene="4N143" /locus_tag="4N143" /codon_start=1 /product="thaumatin family precursor (4N143)" /protein_id="17540034" /db_xref="GI:17540034" /db_xref="AceView/WormGenes:4N143" /db_xref="LocusID:185060" // > 10634_NC_003282 protein_id:32566001; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N178"; intron(phase:0022,position:4,34,83,102); exon(number:5,size:3,30,49,19,50,sum:151); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(12413064..12413214,12413720..12413776, 12413829..12413977,12414180..12414269,12417465..12417473)) /gene="4N178" /locus_tag="4N178" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil-4 domain (18.0 kD) (4N178)" /protein_id="32566001" /db_xref="GI:32566001" /db_xref="AceView/WormGenes:4N178" /db_xref="LocusID:184204" // > 10636_NC_003282 protein_id:17539722; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N197"; intron(phase:200000110101,position:19,50,195,296,350,406,427,445,497,549,691,723); exon(number:13,size:18,31,145,101,54,56,21,18,52,52,142,32,73,sum:795); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12429865..12429920,12429966..12430056, 12430851..12431285,12431580..12431882,12432070..12432231, 12432290..12432457,12432618..12432681,12432727..12432780, 12433232..12433386,12433455..12433611,12433728..12434152, 12434199..12434295,12434758..12434978) /gene="4N197" /locus_tag="4N197" /codon_start=1 /evidence=experimental /product="UDP-glucuronosyltransferase family member (4N197)" /protein_id="17539722" /db_xref="GI:17539722" /db_xref="AceView/WormGenes:4N197" /db_xref="LocusID:184205" // > 10638_NC_003282 protein_id:17538770; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N205"; intron(phase:110001100,position:28,46,100,152,400,432,493,562,618); exon(number:10,size:27,18,54,52,248,32,61,69,56,91,sum:708); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12438656..12438737,12438894..12438947, 12438997..12439157,12439426..12439581,12439825..12440568, 12440612..12440708,12440947..12441129,12441981..12442186, 12442234..12442401,12442737..12443012) /gene="4N205" /locus_tag="4N205" /codon_start=1 /product="predicted CDS, receptor for egg jelly like family member (4N205)" /protein_id="17538770" /db_xref="GI:17538770" /db_xref="AceView/WormGenes:4N205" /db_xref="LocusID:182914" // > 10673_NC_003282 protein_id:17539492; Caenorhabditis elegans chromosome IV, complete sequence. /gene="cul-6"; intron(phase:220000,position:33,292,406,556,666,687); exon(number:7,size:32,259,114,150,110,21,43,sum:729); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(12586529..12586660,12586841..12586903, 12586983..12587312,12587466..12587915,12588045..12588384, 12588648..12589424,12590307..12590404)) /gene="cul-6" /locus_tag="4N352" /codon_start=1 /evidence=experimental /product="cullin (cul-6)" /protein_id="17539492" /db_xref="GI:17539492" /db_xref="AceView/WormGenes:cul-6" /db_xref="LocusID:178214" // > 10695_NC_003282 protein_id:17539690; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N553"; intron(phase:000000,position:15,48,69,124,150,180); exon(number:7,size:14,33,21,55,26,30,52,sum:231); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12789033..12789074,12789207..12789305, 12789355..12789417,12789462..12789626,12789762..12789839, 12789886..12789975,12790211..12790369) /gene="4N553" /locus_tag="4N553" /codon_start=1 /product="predicted CDS, putative protein (4N553)" /protein_id="17539690" /db_xref="GI:17539690" /db_xref="AceView/WormGenes:4N553" /db_xref="LocusID:184138" // > 10696_NC_003282 protein_id:17539688; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N555"; intron(phase:200,position:25,115,148); exon(number:4,size:24,90,33,20,sum:167); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12791146..12791219,12791287..12791554, 12791611..12791709,12791767..12791829) /gene="4N555" /locus_tag="4N555" /codon_start=1 /product="predicted CDS, putative protein, with at least 2 transmembrane domains (4N555)" /protein_id="17539688" /db_xref="GI:17539688" /db_xref="AceView/WormGenes:4N555" /db_xref="LocusID:184137" // > 10710_NC_003282 protein_id:17544692; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N648"; intron(phase:22212121,position:28,66,83,123,191,228,297,343); exon(number:9,size:27,38,17,40,68,37,69,46,14,sum:356); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(12883482..12883525,12883574..12883710, 12883852..12884059,12884101..12884210,12884818..12885022, 12885065..12885183,12885233..12885283,12885559..12885672, 12885714..12885796)) /gene="4N648" /locus_tag="4N648" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (4N648)" /protein_id="17544692" /db_xref="GI:17544692" /db_xref="AceView/WormGenes:4N648" /db_xref="LocusID:178240" // > 10718_NC_003282 protein_id:17538916; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N681"; intron(phase:0200,position:54,95,195,247); exon(number:5,size:53,41,100,52,86,sum:332); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(12916018..12916176,12916226..12916350, 12916404..12916701,12916751..12916906,12917008..12917268) /gene="4N681" /locus_tag="4N681" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 6 transmembrane domains (4N681)" /protein_id="17538916" /db_xref="GI:17538916" /db_xref="AceView/WormGenes:4N681" /db_xref="LocusID:183127" // > 10756_NC_003282 protein_id:17540544; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N825"; intron(phase:102,position:15,61,179); exon(number:4,size:14,46,118,33,sum:211); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(13059603..13059645,13059697..13059833, 13060076..13060431,13060478..13060577) /gene="4N825" /locus_tag="4N825" /codon_start=1 /evidence=experimental /product="allergen V5/Tpx-1 related precursor family member (4N825)" /protein_id="17540544" /db_xref="GI:17540544" /db_xref="AceView/WormGenes:4N825" /db_xref="LocusID:178252" // > 10764_NC_003282 protein_id:17539088; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4N847"; intron(phase:00222,position:29,80,111,183,223); exon(number:6,size:28,51,31,72,40,26,sum:248); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(13079483..13079566,13080742..13080894, 13080940..13081034,13081085..13081300,13082292..13082411, 13082458..13082536) /gene="4N847" /locus_tag="4N847" /codon_start=1 /evidence=experimental /product="putative protein (28.1 kD) (4N847)" /protein_id="17539088" /db_xref="GI:17539088" /db_xref="AceView/WormGenes:4N847" /db_xref="LocusID:178255" // > 10769_NC_003282 protein_id:17541990; Caenorhabditis elegans chromosome IV, complete sequence. /gene="rfc-3"; intron(phase:20,position:59,297); exon(number:3,size:58,238,58,sum:354); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(13095744..13095919,13095964..13096675, 13096737..13096913) /gene="rfc-3" /locus_tag="4N861" /codon_start=1 /evidence=experimental /product="DNA Replication Factor C (40.3 kD) (rfc-3)" /protein_id="17541990" /db_xref="GI:17541990" /db_xref="AceView/WormGenes:rfc-3" /db_xref="LocusID:178259" // > 10860_NC_003282 protein_id:17538586; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O372"; intron(phase:12122,position:37,131,185,272,343); exon(number:6,size:36,94,54,87,71,62,sum:404); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(13607521..13607707,13607753..13607965, 13608012..13608273,13609119..13609279,13609365..13609647, 13609693..13609801)) /gene="4O372" /locus_tag="4O372" /codon_start=1 /evidence=experimental /product="putative protein, with at least 8 transmembrane domains (46.8 kD) (4O372)" /protein_id="17538586" /db_xref="GI:17538586" /db_xref="AceView/WormGenes:4O372" /db_xref="LocusID:178327" // > 10871_NC_003282 protein_id:17538580; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O412"; intron(phase:01,position:24,166); exon(number:3,size:23,142,96,sum:261); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(13648043..13648332,13648381..13648807, 13649116..13649184)) /gene="4O412" /locus_tag="4O412" /codon_start=1 /evidence=experimental /product="putative nuclear protein family member (4O412)" /protein_id="17538580" /db_xref="GI:17538580" /db_xref="AceView/WormGenes:4O412" /db_xref="LocusID:178332" // > 10877_NC_003282 protein_id:17542538; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O441"; intron(phase:20122210120,position:44,133,179,287,364,402,421,460,500,537,609); exon(number:12,size:43,89,46,108,77,38,19,39,40,37,72,81,sum:689); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(13673778..13673908,13673955..13674219, 13674477..13674615,13674670..13674994,13675112..13675342, 13675456..13675569,13675658..13675713,13676175..13676290, 13676484..13676604,13676648..13676759,13677230..13677443, 13677552..13677797) /gene="4O441" /locus_tag="4O441" /codon_start=1 /product="acyltransferase 3 family (4O441)" /protein_id="17542538" /db_xref="GI:17542538" /db_xref="AceView/WormGenes:4O441" /db_xref="LocusID:188814" // > 10893_NC_003282 protein_id:17543478; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O559"; intron(phase:0222202,position:22,76,239,262,367,563,778); exon(number:8,size:21,54,163,23,105,196,215,120,sum:897); {splice:gtag,gtag,gtag,gcag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(13789081..13789143,13789191..13789354, 13789400..13789888,13789948..13790016,13790845..13791159, 13792578..13793163,13794353..13794999,13795736..13796096) /gene="4O559" /locus_tag="4O559" /codon_start=1 /evidence=experimental /product="t-cell activation WD repeat protein like (4O559)" /protein_id="17543478" /db_xref="GI:17543478" /db_xref="AceView/WormGenes:4O559" /db_xref="LocusID:178346" // > 10913_NC_003282 protein_id:17542628; Caenorhabditis elegans chromosome IV, complete sequence. /gene="tor-1"; intron(phase:012,position:14,46,107); exon(number:4,size:13,32,61,229,sum:335); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(13984488..13985175,13985229..13985412, 13986318..13986414,13987403..13987441)) /gene="tor-1" /locus_tag="4O748" /codon_start=1 /product="predicted CDS, human TORsin related, torsion dystonia DYT1 related (tor-1)" /protein_id="17542628" /db_xref="GI:17542628" /db_xref="AceView/WormGenes:tor-1" /db_xref="LocusID:189605" // > 10917_NC_003282 protein_id:17543056; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O787"; intron(phase:11100,position:32,127,191,286,432); exon(number:6,size:31,95,64,95,146,52,sum:483); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(14020172..14020265,14020821..14021105, 14021476..14021667,14021718..14022001,14023725..14024162, 14024444..14024602) /gene="4O787" /locus_tag="4O787" /codon_start=1 /product="epidermal growth-factor receptor , L domain containing protein family member (4O787)" /protein_id="17543056" /db_xref="GI:17543056" /db_xref="AceView/WormGenes:4O787" /db_xref="LocusID:189602" // > 10941_NC_003282 protein_id:17541758; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O943"; intron(phase:00,position:57,122); exon(number:3,size:56,65,40,sum:161); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(14177258..14177425,14177959..14178153, 14178671..14178793) /gene="4O943" /locus_tag="4O943" /codon_start=1 /product="putative protein (4O943)" /protein_id="17541758" /db_xref="GI:17541758" /db_xref="AceView/WormGenes:4O943" /db_xref="LocusID:187594" // > 10944_NC_003282 protein_id:17539672; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O961"; intron(phase:0,position:105); exon(number:2,size:104,205,sum:309); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(14197240..14197551,14197847..14198464) /gene="4O961" /locus_tag="4O961" /codon_start=1 /product="predicted CDS, putative nuclear protein (4O961)" /protein_id="17539672" /db_xref="GI:17539672" /db_xref="AceView/WormGenes:4O961" /db_xref="LocusID:184102" // > 10951_NC_003282 protein_id:17543888; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4O998"; intron(phase:201,position:65,137,162); exon(number:4,size:64,72,25,124,sum:285); {splice:gtag,gtag,gcag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(14236875..14237248,14237468..14237543, 14237715..14237928,14238857..14239050)) /gene="4O998" /locus_tag="4O998" /codon_start=1 /product="brain-specific angiogenesis inhibitor precursor family member (4O998)" /protein_id="17543888" /db_xref="GI:17543888" /db_xref="AceView/WormGenes:4O998" /db_xref="LocusID:190473" // > 10967_NC_003282 protein_id:17540644; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4P194"; intron(phase:111,position:15,54,114); exon(number:4,size:14,39,60,32,sum:145); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(14429654..14429751,14430133..14430312, 14430503..14430619,14430846..14430888)) /gene="4P194" /locus_tag="4P194" /codon_start=1 /evidence=experimental /product="putative membrane protein (15.4 kD) (4P194)" /protein_id="17540644" /db_xref="GI:17540644" /db_xref="AceView/WormGenes:4P194" /db_xref="LocusID:178384" // > 11013_NC_003282 protein_id:32565978; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4P633"; intron(phase:1210110,position:48,119,166,185,222,263,301); exon(number:8,size:47,71,47,19,37,41,38,17,sum:317); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(14862476..14862617,14863325..14863538, 14865678..14865817,14866007..14866062,14867086..14867197, 14867247..14867369,14868332..14868444,14869652..14869705) /gene="4P633" /locus_tag="4P633" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (4P633)" /protein_id="32565978" /db_xref="GI:32565978" /db_xref="AceView/WormGenes:4P633" /db_xref="LocusID:178410" // > 11033_NC_003282 protein_id:17541608; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4P867"; intron(phase:100,position:84,198,240); exon(number:4,size:83,114,42,90,sum:329); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(15103596..15103845,15104100..15104440, 15104937..15105062,15106178..15106450) /gene="4P867" /locus_tag="4P867" /codon_start=1 /product="putative protein family member, with at least 7 transmembrane domains (4P867)" /protein_id="17541608" /db_xref="GI:17541608" /db_xref="AceView/WormGenes:4P867" /db_xref="LocusID:187500" // > 11052_NC_003282 protein_id:17544164; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4Q36"; intron(phase:02,position:18,225); exon(number:3,size:17,207,70,sum:294); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(15270265..15270475,15271867..15272489, 15275678..15275728)) /gene="4Q36" /locus_tag="4Q36" /codon_start=1 /evidence=experimental /product="excreted secreted protein 1 like precursor (32.5 kD) (4Q36)" /protein_id="17544164" /db_xref="GI:17544164" /db_xref="AceView/WormGenes:4Q36" /db_xref="LocusID:178426" // > 11053_NC_003282 protein_id:17544166; Caenorhabditis elegans chromosome IV, complete sequence. /gene="pqn-90"; intron(phase:0,position:20); exon(number:2,size:19,401,sum:420); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(15289868..15291073,15291173..15291229)) /gene="pqn-90" /locus_tag="4Q56" /codon_start=1 /product="prion-like Q/N-rich domain protein PQN-90, Prion-like Q/N-rich domain protein (pqn-90)" /protein_id="17544166" /db_xref="GI:17544166" /db_xref="AceView/WormGenes:pqn-90" /db_xref="LocusID:190671" // > 11062_NC_003282 protein_id:17544184; Caenorhabditis elegans chromosome IV, complete sequence. /gene="tbx-40"; intron(phase:20,position:66,129); exon(number:3,size:65,63,252,sum:380); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(15326906..15327664,15327719..15327905, 15327957..15328153)) /gene="tbx-40" /locus_tag="4Q90" /codon_start=1 /product="T BoX family member (tbx-40)" /protein_id="17544184" /db_xref="GI:17544184" /db_xref="AceView/WormGenes:tbx-40" /db_xref="LocusID:190679" // > 11083_NC_003282 protein_id:17544300; Caenorhabditis elegans chromosome IV, complete sequence. /gene="pqn-78"; intron(phase:0,position:19); exon(number:2,size:18,317,sum:335); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(15593927..15594880,15594949..15595002)) /gene="pqn-78" /locus_tag="4Q356" /codon_start=1 /product="predicted CDS, prion-like Q/N-rich domain protein PQN-78, Prion-like Q/N-rich domain protein (pqn-78)" /protein_id="17544300" /db_xref="GI:17544300" /db_xref="AceView/WormGenes:pqn-78" /db_xref="LocusID:190871" // > 11123_NC_003282 protein_id:17541052; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4Q969"; intron(phase:002,position:82,250,311); exon(number:4,size:81,168,61,43,sum:353); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(16204045..16204287,16204400..16204903, 16205042..16205226,16205543..16205672) /gene="4Q969" /locus_tag="4Q969" /codon_start=1 /product="metallo-phosphoesterase family member (4Q969)" /protein_id="17541052" /db_xref="GI:17541052" /db_xref="AceView/WormGenes:4Q969" /db_xref="LocusID:186777" // > 11125_NC_003282 protein_id:17541056; Caenorhabditis elegans chromosome IV, complete sequence. /gene="srv-11"; intron(phase:1102012,position:77,117,144,189,230,256,289); exon(number:8,size:76,40,27,45,41,26,33,59,sum:347); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(16219618..16219795,16219905..16220004, 16220062..16220140,16220192..16220312,16220358..16220494, 16220541..16220620,16220849..16220968,16221397..16221625)) /gene="srv-11" /locus_tag="4Q980" /codon_start=1 /product="predicted CDS, serpentine Receptor, class V (srv-11)" /protein_id="17541056" /db_xref="GI:17541056" /db_xref="AceView/WormGenes:srv-11" /db_xref="LocusID:186779" // > 11147_NC_003282 protein_id:17539066; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R99"; intron(phase:2,position:13); exon(number:2,size:12,55,sum:67); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(16347134..16347171,16347231..16347396) /gene="4R99" /locus_tag="4R99" /codon_start=1 /product="putative cytoplasmic protein (4R99)" /protein_id="17539066" /db_xref="GI:17539066" /db_xref="AceView/WormGenes:4R99" /db_xref="LocusID:183234" // > 11160_NC_003282 protein_id:17543518; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R466"; intron(phase:02120222,position:107,122,174,200,219,259,319,449); exon(number:9,size:106,15,52,26,19,40,60,130,50,sum:498); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(16522548..16522698,16523388..16523777, 16524541..16524720,16525045..16525166,16525357..16525411, 16525996..16526074,16526500..16526654,16526809..16526855, 16529058..16529375)) /gene="4R466" /locus_tag="4R466" /codon_start=1 /product="predicted CDS, lipase, class 3 family member (4R466)" /protein_id="17543518" /db_xref="GI:17543518" /db_xref="AceView/WormGenes:4R466" /db_xref="LocusID:190146" // > 11163_NC_003282 protein_id:17543524; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R518"; intron(phase:020,position:71,429,460); exon(number:4,size:70,358,31,116,sum:575); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(16575113..16575463,16575667..16575757, 16575896..16576971,16578271..16578480)) /gene="4R518" /locus_tag="4R518" /codon_start=1 /product="transposase precursor (4R518)" /protein_id="17543524" /db_xref="GI:17543524" /db_xref="AceView/WormGenes:4R518" /db_xref="LocusID:190148" // > 11168_NC_003282 protein_id:17543530; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R590"; intron(phase:10200101,position:36,160,273,576,1188,1279,1544,1632); exon(number:9,size:35,124,113,303,612,91,265,88,14,sum:1645); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(16647089..16647132,16647264..16647528, 16648184..16648977,16649511..16649784,16650267..16652102, 16653041..16653947,16654842..16655182,16655270..16655640, 16655692..16655797)) /gene="4R590" /locus_tag="4R590" /codon_start=1 /evidence=experimental /product="zn-finger-like, PHD finger and nuclear protein SET family member (4R590)" /protein_id="17543530" /db_xref="GI:17543530" /db_xref="AceView/WormGenes:4R590" /db_xref="LocusID:178463" // > 11173_NC_003282 protein_id:17543546; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R620"; intron(phase:22,position:44,82); exon(number:3,size:43,38,29,sum:110); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(16680774..16680861,16682068..16682181, 16682233..16682363)) /gene="4R620" /locus_tag="4R620" /codon_start=1 /product="predicted CDS, putative nuclear protein (4R620)" /protein_id="17543546" /db_xref="GI:17543546" /db_xref="AceView/WormGenes:4R620" /db_xref="LocusID:190155" // > 11184_NC_003282 protein_id:32566488; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R729"; intron(phase:20112200010122110,position:46,96,116,147,195,1117,1136,1174,1208,1263,1348,1377,1419,1434,1453,1527,1612); exon(number:18,size:45,50,20,31,48,922,19,38,34,55,85,29,42,15,19,74,85,37,sum:1648); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(16773794..16773930,16774427..16774574, 16775067..16775127,16775905..16775997,16776271..16776415, 16776488..16779253,16779331..16779385,16779429..16779542, 16779593..16779694,16779748..16779913,16780047..16780300, 16780348..16780435,16780482..16780608,16780738..16780782, 16780899..16780954,16781916..16782137,16782536..16782789, 16784908..16785021) /gene="4R729" /locus_tag="4R729" /codon_start=1 /product="predicted CDS, putative protein family member, with 3 coiled coil-4 domains (4R729)" /protein_id="32566488" /db_xref="GI:32566488" /db_xref="AceView/WormGenes:4R729" /db_xref="LocusID:189854" // > 11190_NC_003282 protein_id:17544390; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R766"; intron(phase:1201011,position:42,124,152,191,218,257,439); exon(number:8,size:41,82,28,39,27,39,182,18,sum:456); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(16825887..16825942,16826320..16826865, 16826917..16827034,16827082..16827161,16827204..16827321, 16827390..16827471,16827517..16827763,16827807..16827930)) /gene="4R766" /locus_tag="4R766" /codon_start=1 /product="predicted CDS, putative protein family member (4R766)" /protein_id="17544390" /db_xref="GI:17544390" /db_xref="AceView/WormGenes:4R766" /db_xref="LocusID:190986" // > 11197_NC_003282 protein_id:32566492; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R835"; intron(phase:1121,position:44,78,100,148); exon(number:5,size:43,34,22,48,46,sum:193); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(16894222..16894351,16895303..16895404, 16895551..16895617,16895691..16895833,16895904..16896043) /gene="4R835" /locus_tag="4R835" /codon_start=1 /product="ribosomal L29e protein family member (4R835)" /protein_id="32566492" /db_xref="GI:32566492" /db_xref="AceView/WormGenes:4R835" /db_xref="LocusID:188158" // > 11211_NC_003282 protein_id:17544436; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R972"; intron(phase:220021,position:42,144,240,268,297,328); exon(number:7,size:41,102,96,28,29,31,31,sum:358); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(17028985..17029079,17029131..17029222, 17029332..17029420,17029470..17029553,17029597..17029882, 17029927..17030232,17030851..17030975)) /gene="4R972" /locus_tag="4R972" /codon_start=1 /product="thyroid hormone receptor (4R972)" /protein_id="17544436" /db_xref="GI:17544436" /db_xref="AceView/WormGenes:4R972" /db_xref="LocusID:191001" // > 11213_NC_003282 protein_id:17544444; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4R990"; intron(phase:000,position:36,172,239); exon(number:4,size:35,136,67,48,sum:286); {splice:gtag,gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(17046445..17046591,17046931..17047131, 17047627..17048034,17048211..17048315)) /gene="4R990" /locus_tag="4R990" /codon_start=1 /evidence=experimental /product="HMG-I and HMG-Y DNA-binding domain containing protein (32.6 kD) (4R990)" /protein_id="17544444" /db_xref="GI:17544444" /db_xref="AceView/WormGenes:4R990" /db_xref="LocusID:178479" // > 11227_NC_003282 protein_id:17544466; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4S62"; intron(phase:02,position:32,143); exon(number:3,size:31,111,143,sum:285); {splice:gtag,gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS complement(join(17116848..17117277,17118026..17118360, 17118412..17118504)) /gene="4S62" /locus_tag="4S62" /codon_start=1 /evidence=experimental /product="auxiliary factor (30.9 kD) (4S62)" /protein_id="17544466" /db_xref="GI:17544466" /db_xref="AceView/WormGenes:4S62" /db_xref="LocusID:178489" // > 11267_NC_003282 protein_id:17539332; Caenorhabditis elegans chromosome IV, complete sequence. /gene="4S279"; intron(phase:2,position:224); exon(number:2,size:223,52,sum:275); {splice:gtag} LOCUS NC_003282 17493790 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome IV, complete sequence. ACCESSION NC_003282 VERSION NC_003282.2 GI:25167767 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493790) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17493790) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17493790 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="IV" _HEADER_END_ CDS join(17334128..17334798,17334847..17335003) /gene="4S279" /locus_tag="4S279" /codon_start=1 /product="putative protein, with 2 coiled coil-4 domains (4S279)" /protein_id="17539332" /db_xref="GI:17539332" /db_xref="AceView/WormGenes:4S279" /db_xref="LocusID:183600" // > 11310_NC_003283 protein_id:32567080; Caenorhabditis elegans chromosome V, complete sequence. /gene="5A554"; intron(phase:1110100012,position:35,67,109,167,261,307,336,370,388,428); exon(number:11,size:34,32,42,58,94,46,29,34,18,40,48,sum:475); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(79190..79334,79506..79626,79684..79738, 81007..81108,83079..83165,83239..83375,83543..83825, 84194..84366,85021..85146,86036..86131,86186..86288)) /gene="5A554" /locus_tag="5A554" /codon_start=1 /product="predicted CDS, putative endoplasmic reticulum protein (5A554)" /protein_id="32567080" /db_xref="GI:32567080" /db_xref="AceView/WormGenes:5A554" /db_xref="LocusID:186393" // > 11338_NC_003283 protein_id:17563568; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-121"; intron(phase:020001,position:62,116,184,209,252,312); exon(number:7,size:61,54,68,25,43,60,31,sum:342); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(252182..252276,252319..252499, 252546..252674,252728..252802,252963..253164, 253446..253609,254338..254520)) /gene="str-121" /locus_tag="5A730" /codon_start=1 /product="seven TM Receptor (str-121)" /protein_id="17563568" /db_xref="GI:17563568" /db_xref="AceView/WormGenes:str-121" /db_xref="LocusID:192002" // > 11389_NC_003283 protein_id:17563732; Caenorhabditis elegans chromosome V, complete sequence. /gene="5A965"; intron(phase:1020,position:75,193,256,350); exon(number:5,size:74,118,63,94,34,sum:383); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(486819..487041,487090..487442,488235..488425, 488474..488753,488801..488905) /gene="5A965" /locus_tag="5A965" /codon_start=1 /product="nuclear receptor NHR-5 family member (5A965)" /protein_id="17563732" /db_xref="GI:17563732" /db_xref="AceView/WormGenes:5A965" /db_xref="LocusID:187963" // > 11392_NC_003283 protein_id:17563728; Caenorhabditis elegans chromosome V, complete sequence. /gene="nhr-131"; intron(phase:022102,position:35,67,88,108,246,310); exon(number:7,size:34,32,21,20,138,64,126,sum:435); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(493800..493901,494469..494566,494614..494676, 494836..494894,495419..495831,495882..496075, 496662..497040) /gene="nhr-131" /locus_tag="5A973" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (nhr-131)" /protein_id="17563728" /db_xref="GI:17563728" /db_xref="AceView/WormGenes:nhr-131" /db_xref="LocusID:187962" // > 11399_NC_003283 protein_id:17563362; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-37"; intron(phase:2100,position:59,107,174,253); exon(number:5,size:58,48,67,79,93,sum:345); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(511023..511304,511369..511605, 511651..511850,511902..512044,512174..512349)) /gene="srh-37" /locus_tag="5A984" /codon_start=1 /product="serpentine Receptor, class H (srh-37)" /protein_id="17563362" /db_xref="GI:17563362" /db_xref="AceView/WormGenes:srh-37" /db_xref="LocusID:191856" // > 11402_NC_003283 protein_id:17563140; Caenorhabditis elegans chromosome V, complete sequence. /gene="5A990"; intron(phase:21022,position:36,56,202,266,381); exon(number:6,size:35,20,146,64,115,61,sum:441); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(517014..517197,517705..518049, 518096..518289,518567..519003,519115..519173, 519268..519374)) /gene="5A990" /locus_tag="5A990" /codon_start=1 /product="nuclear receptor NHR-115 family member (5A990)" /protein_id="17563140" /db_xref="GI:17563140" /db_xref="AceView/WormGenes:5A990" /db_xref="LocusID:187830" // > 11407_NC_003283 protein_id:17562756; Caenorhabditis elegans chromosome V, complete sequence. /gene="nhr-58"; intron(phase:22102,position:33,54,74,166,269); exon(number:6,size:32,21,20,92,103,125,sum:393); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(532192..532289,532336..532398,532447..532505, 532803..533077,533133..533443,533494..533869) /gene="nhr-58" /locus_tag="5B11" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (45.6 kD) (nhr-58)" /protein_id="17562756" /db_xref="GI:17562756" /db_xref="AceView/WormGenes:nhr-58" /db_xref="LocusID:178573" // > 11420_NC_003283 protein_id:17557956; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B50"; intron(phase:1200,position:91,129,146,268); exon(number:5,size:90,38,17,122,33,sum:300); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(571860..571961,572088..572453, 572506..572554,572604..572718,574298..574568)) /gene="5B50" /locus_tag="5B50" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (5B50)" /protein_id="17557956" /db_xref="GI:17557956" /db_xref="AceView/WormGenes:5B50" /db_xref="LocusID:182607" // > 11431_NC_003283 protein_id:17566878; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-110"; intron(phase:22222,position:89,137,182,194,235); exon(number:6,size:88,48,45,12,41,68,sum:302); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(604554..604758,604852..604974, 605171..605206,605253..605387,605436..605579, 605747..606012)) /gene="srw-110" /locus_tag="5B78" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-110)" /protein_id="17566878" /db_xref="GI:17566878" /db_xref="AceView/WormGenes:srw-110" /db_xref="LocusID:191333" // > 11435_NC_003283 protein_id:17566866; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B91"; intron(phase:2202,position:77,98,129,234); exon(number:5,size:76,21,31,105,125,sum:358); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(612474..612703,612942..613004,613340..613430, 613903..614219,614362..614737) /gene="5B91" /locus_tag="5B91" /codon_start=1 /product="nuclear receptor NHR-115 family member (5B91)" /protein_id="17566866" /db_xref="GI:17566866" /db_xref="AceView/WormGenes:5B91" /db_xref="LocusID:191328" // > 11437_NC_003283 protein_id:17561168; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B97"; intron(phase:02,position:190,232); exon(number:3,size:189,42,44,sum:275); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(620045..620611,620661..620788,621200..621332) /gene="5B97" /locus_tag="5B97" /codon_start=1 /product="putative cytoplasmic protein (5B97)" /protein_id="17561168" /db_xref="GI:17561168" /db_xref="AceView/WormGenes:5B97" /db_xref="LocusID:185993" // > 11439_NC_003283 protein_id:17561172; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B102"; intron(phase:00,position:61,203); exon(number:3,size:60,142,126,sum:328); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(623754..624134,624181..624606, 624672..624851)) /gene="5B102" /locus_tag="5B102" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 6 transmembrane domains (5B102)" /protein_id="17561172" /db_xref="GI:17561172" /db_xref="AceView/WormGenes:5B102" /db_xref="LocusID:185994" // > 11444_NC_003283 protein_id:17561180; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B114"; intron(phase:1,position:59); exon(number:2,size:58,110,sum:168); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(633971..634302,634548..634722)) /gene="5B114" /locus_tag="5B114" /codon_start=1 /product="protein c kinase 98E family member (5B114)" /protein_id="17561180" /db_xref="GI:17561180" /db_xref="AceView/WormGenes:5B114" /db_xref="LocusID:185998" // > 11445_NC_003283 protein_id:32567088; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B117"; intron(phase:0,position:90); exon(number:2,size:89,60,sum:149); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(636416..636682,636728..636910) /gene="5B117" /locus_tag="5B117" /codon_start=1 /evidence=experimental /product="putative protein (17.1 kD) (5B117)" /protein_id="32567088" /db_xref="GI:32567088" /db_xref="AceView/WormGenes:5B117" /db_xref="LocusID:185992" // > 11452_NC_003283 protein_id:17563410; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-245"; intron(phase:10,position:105,245); exon(number:3,size:104,140,86,sum:330); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(654557..654817,654865..655283, 655441..655753)) /gene="srh-245" /locus_tag="5B132" /codon_start=1 /product="serpentine Receptor, class H (srh-245)" /protein_id="17563410" /db_xref="GI:17563410" /db_xref="AceView/WormGenes:srh-245" /db_xref="LocusID:191892" // > 11456_NC_003283 protein_id:17563416; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-266"; intron(phase:100,position:99,161,237); exon(number:4,size:98,62,76,91,sum:327); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(664627..664921,664973..665157,665203..665430, 665478..665753) /gene="srh-266" /locus_tag="5B143" /codon_start=1 /product="serpentine Receptor, class H (srh-266)" /protein_id="17563416" /db_xref="GI:17563416" /db_xref="AceView/WormGenes:srh-266" /db_xref="LocusID:191895" // > 11475_NC_003283 protein_id:17561814; Caenorhabditis elegans chromosome V, complete sequence. /gene="gei-7"; intron(phase:0001,position:11,169,445,861); exon(number:5,size:10,158,276,416,108,sum:968); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(724287..724612,724665..725913, 725982..726809,727215..727688,727758..727787)) /gene="gei-7" /locus_tag="5B204" /codon_start=1 /evidence=experimental /product="GEX (Gut on EXterior) Interacting protein GEI-7, bifunctional glyoxylate cycle protein, mainly expressed in intestine and muscle family member (108.6 kD) (gei-7)" /protein_id="17561814" /db_xref="GI:17561814" /db_xref="AceView/WormGenes:gei-7" /db_xref="LocusID:178583" // > 11480_NC_003283 protein_id:17557658; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B219"; intron(phase:1,position:49); exon(number:2,size:48,68,sum:116); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(741950..742094,742140..742345) /gene="5B219" /locus_tag="5B219" /codon_start=1 /product="predicted CDS, putative protein (5B219)" /protein_id="17557658" /db_xref="GI:17557658" /db_xref="AceView/WormGenes:5B219" /db_xref="LocusID:182263" // > 11483_NC_003283 protein_id:17563652; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-262"; intron(phase:012201,position:62,91,117,162,214,318); exon(number:7,size:61,29,26,45,52,104,36,sum:353); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(751156..751265,751314..751626, 751675..751828,751875..752009,752095..752173, 752216..752303,752427..752609)) /gene="str-262" /locus_tag="5B226" /codon_start=1 /product="seven TM Receptor (str-262)" /protein_id="17563652" /db_xref="GI:17563652" /db_xref="AceView/WormGenes:str-262" /db_xref="LocusID:192047" // > 11499_NC_003283 protein_id:17563190; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B290"; intron(phase:2,position:28); exon(number:2,size:27,52,sum:79); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(812738..812894,812942..813024)) /gene="5B290" /locus_tag="5B290" /codon_start=1 /evidence=experimental /product="putative protein (5B290)" /protein_id="17563190" /db_xref="GI:17563190" /db_xref="AceView/WormGenes:5B290" /db_xref="LocusID:178588" // > 11517_NC_003283 protein_id:17563748; Caenorhabditis elegans chromosome V, complete sequence. /gene="srg-53"; intron(phase:00,position:162,251); exon(number:3,size:161,89,45,sum:295); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(879623..880105,880621..880887,881267..881404) /gene="srg-53" /locus_tag="5B359" /codon_start=1 /product="serpentine Receptor, class G (gamma) (srg-53)" /protein_id="17563748" /db_xref="GI:17563748" /db_xref="AceView/WormGenes:srg-53" /db_xref="LocusID:187980" // > 11522_NC_003283 protein_id:17561946; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B389"; intron(phase:220,position:49,302,378); exon(number:4,size:48,253,76,170,sum:547); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(904798..904943,905021..905779,907333..907558, 908590..909102) /gene="5B389" /locus_tag="5B389" /codon_start=1 /evidence=experimental /product="HpaII tiny fragments locus 9c (5B389)" /protein_id="17561946" /db_xref="GI:17561946" /db_xref="AceView/WormGenes:5B389" /db_xref="LocusID:186775" // > 11531_NC_003283 protein_id:25148583; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B495"; intron(phase:212102,position:314,376,682,774,801,1088); exon(number:7,size:313,62,306,92,27,287,34,sum:1121); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1008643..1009583,1010425..1010609,1011950..1012868, 1013929..1014203,1014909..1014988,1016198..1017060, 1017801..1017903) /gene="5B495" /locus_tag="5B495" /codon_start=1 /evidence=experimental /product="eukaryotic initiation factor 2C2 (126.7 kD) (5B495)" /protein_id="25148583" /db_xref="GI:25148583" /db_xref="AceView/WormGenes:5B495" /db_xref="LocusID:178602" // > 11543_NC_003283 protein_id:17565896; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B567"; intron(phase:1012,position:82,219,254,321); exon(number:5,size:81,137,35,67,49,sum:369); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1088199..1088442,1088491..1088900,1089106..1089211, 1089255..1089456,1089574..1089721) /gene="5B567" /locus_tag="5B567" /codon_start=1 /product="predicted CDS, c-type lectin family member (5B567)" /protein_id="17565896" /db_xref="GI:17565896" /db_xref="AceView/WormGenes:5B567" /db_xref="LocusID:190095" // > 11545_NC_003283 protein_id:32567102; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B579"; intron(phase:12,position:69,229); exon(number:3,size:68,160,35,sum:263); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1100982..1101186,1103167..1103647,1103771..1103876) /gene="5B579" /locus_tag="5B579" /codon_start=1 /product="putative protein family member of ancient origin (5B579)" /protein_id="32567102" /db_xref="GI:32567102" /db_xref="AceView/WormGenes:5B579" /db_xref="LocusID:190094" // > 11547_NC_003283 protein_id:17565160; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B607"; intron(phase:0002,position:34,113,183,213); exon(number:5,size:33,79,70,30,42,sum:254); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1121882..1121980,1123325..1123561,1126897..1127106, 1127784..1127875,1128814..1128940) /gene="5B607" /locus_tag="5B607" /codon_start=1 /evidence=experimental /product="putative protein (5B607)" /protein_id="17565160" /db_xref="GI:17565160" /db_xref="AceView/WormGenes:5B607" /db_xref="LocusID:178610" // > 11567_NC_003283 protein_id:25146018; Caenorhabditis elegans chromosome V, complete sequence. /gene="pme-5"; intron(phase:101002000,position:30,215,281,852,1617,1698,1813,1957,2172); exon(number:10,size:29,185,66,571,765,81,115,144,215,67,sum:2238); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(1276360..1276563,1276623..1277267, 1277319..1277750,1277800..1278142,1278631..1278875, 1278922..1281216,1281527..1283238,1283289..1283487, 1283537..1284090,1285426..1285513)) /gene="pme-5" /locus_tag="5B756" /codon_start=1 /evidence=experimental /product="poly ADP-ribose Metabolism Enzyme (250.3 kD) (pme-5)" /protein_id="25146018" /db_xref="GI:25146018" /db_xref="AceView/WormGenes:pme-5" /db_xref="LocusID:178623" // > 11577_NC_003283 protein_id:17563026; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B912"; intron(phase:20221,position:62,93,134,162,380); exon(number:6,size:61,31,41,28,218,79,sum:458); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(1434170..1434408,1434606..1435258, 1435550..1435633,1435951..1436075,1436289..1436379, 1436694..1436878)) /gene="5B912" /locus_tag="5B912" /codon_start=1 /product="predicted CDS, cyclin-like F-box and Protein of unknown function DUF38 family member (5B912)" /protein_id="17563026" /db_xref="GI:17563026" /db_xref="AceView/WormGenes:5B912" /db_xref="LocusID:187725" // > 11578_NC_003283 protein_id:25148667; Caenorhabditis elegans chromosome V, complete sequence. /gene="5B919"; intron(phase:202010,position:13,41,100,125,321,467); exon(number:7,size:12,28,59,25,196,146,50,sum:516); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1439085..1439122,1439171..1439252,1439726..1439904, 1439957..1440029,1440077..1440665,1440987..1441423, 1441481..1441633) /gene="5B919" /locus_tag="5B919" /codon_start=1 /evidence=experimental /product="glucose transporter X family member (57.6 kD) (5B919)" /protein_id="25148667" /db_xref="GI:25148667" /db_xref="AceView/WormGenes:5B919" /db_xref="LocusID:178634" // > 11605_NC_003283 protein_id:17561254; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C18"; intron(phase:12102,position:65,176,359,609,637); exon(number:6,size:64,111,183,250,28,48,sum:684); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(1538263..1538407,1538457..1538542, 1538596..1539344,1540224..1540771,1540815..1541148, 1541353..1541545)) /gene="5C18" /locus_tag="5C18" /codon_start=1 /evidence=experimental /product="acyltransferase 3 family (5C18)" /protein_id="17561254" /db_xref="GI:17561254" /db_xref="AceView/WormGenes:5C18" /db_xref="LocusID:178643" // > 11618_NC_003283 protein_id:17559768; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C82"; intron(phase:2100001,position:49,69,100,135,171,243,313); exon(number:8,size:48,20,31,35,36,72,70,82,sum:394); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(1603805..1604052,1604113..1604323, 1604375..1604590,1605777..1605884,1605935..1606039, 1606185..1606276,1606326..1606384,1607499..1607644)) /gene="5C82" /locus_tag="5C82" /codon_start=1 /product="nuclear receptor NHR-102 family member (5C82)" /protein_id="17559768" /db_xref="GI:17559768" /db_xref="AceView/WormGenes:5C82" /db_xref="LocusID:184560" // > 11632_NC_003283 protein_id:32566946; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C127"; intron(phase:10,position:54,154); exon(number:3,size:53,100,134,sum:287); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1648591..1648750,1649405..1649703,1649796..1650200) /gene="5C127" /locus_tag="5C127" /codon_start=1 /evidence=experimental /product="epidermal growth-factor receptor , L domain containing protein family member (5C127)" /protein_id="32566946" /db_xref="GI:32566946" /db_xref="AceView/WormGenes:5C127" /db_xref="LocusID:187000" // > 11645_NC_003283 protein_id:17563330; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-3"; intron(phase:2001,position:57,171,249,275); exon(number:5,size:56,114,78,26,60,sum:334); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1682408..1682577,1683366..1683705,1683765..1683998, 1684048..1684126,1684737..1684918) /gene="srh-3" /locus_tag="5C155" /codon_start=1 /product="serpentine Receptor, class H (srh-3)" /protein_id="17563330" /db_xref="GI:17563330" /db_xref="AceView/WormGenes:srh-3" /db_xref="LocusID:191840" // > 11665_NC_003283 protein_id:17560676; Caenorhabditis elegans chromosome V, complete sequence. /gene="dhs-13"; intron(phase:001,position:22,50,192); exon(number:4,size:21,28,142,66,sum:257); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(1765666..1765865,1768660..1769086, 1770281..1770364,1771494..1771556)) /gene="dhs-13" /locus_tag="5C246" /codon_start=1 /evidence=experimental /product="DeHydrogenase, Short chain (dhs-13)" /protein_id="17560676" /db_xref="GI:17560676" /db_xref="AceView/WormGenes:dhs-13" /db_xref="LocusID:178658" // > 11683_NC_003283 protein_id:25148738; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C344"; intron(phase:2210,position:65,141,221,288); exon(number:5,size:64,76,80,67,8,sum:295); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(1864310..1864336,1866729..1866928, 1867629..1867867,1867917..1868144,1868196..1868389)) /gene="5C344" /locus_tag="5C344" /codon_start=1 /evidence=experimental /product="putative protein of fungal and metazoan origin (32.4 kD) (5C344)" /protein_id="25148738" /db_xref="GI:25148738" /db_xref="AceView/WormGenes:5C344" /db_xref="LocusID:178667" // > 11690_NC_003283 protein_id:25154383; Caenorhabditis elegans chromosome V, complete sequence. /gene="srp-3"; intron(phase:200,position:92,258,310); exon(number:4,size:91,166,52,53,sum:362); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(1908737..1909011,1909516..1910011,1910055..1910210, 1910257..1910418) /gene="srp-3" /locus_tag="5C387" /codon_start=1 /evidence=experimental /product="serpin (40.6 kD) (srp-3)" /protein_id="25154383" /db_xref="GI:25154383" /db_xref="AceView/WormGenes:srp-3" /db_xref="LocusID:178672" // > 11736_NC_003283 protein_id:17560074; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C584"; intron(phase:02220200,position:7,49,132,169,224,249,299,346); exon(number:9,size:6,42,83,37,55,25,50,47,36,sum:381); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2106328..2106438,2106484..2106624, 2106689..2106836,2107065..2107141,2107187..2107349, 2107477..2107587,2107635..2107883,2108910..2109037, 2109111..2109128)) /gene="5C584" /locus_tag="5C584" /codon_start=1 /product="predicted CDS, choline kinase CKB-2 family member (5C584)" /protein_id="17560074" /db_xref="GI:17560074" /db_xref="AceView/WormGenes:5C584" /db_xref="LocusID:184864" // > 11766_NC_003283 protein_id:25146317; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C695"; intron(phase:0020011,position:24,56,88,135,176,207,251); exon(number:8,size:23,32,32,47,41,31,44,101,sum:351); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2215552..2215620,2215686..2215781,2215827..2215924, 2215968..2216106,2216709..2216831,2216882..2216975, 2217018..2217149,2217615..2217919) /gene="5C695" /locus_tag="5C695" /codon_start=1 /evidence=experimental /product="nucleotide-sugar transporter family member (39.1 kD) (5C695)" /protein_id="25146317" /db_xref="GI:25146317" /db_xref="AceView/WormGenes:5C695" /db_xref="LocusID:178698" // > 11786_NC_003283 protein_id:17564780; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C761"; intron(phase:002,position:13,246,290); exon(number:4,size:12,233,44,68,sum:357); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2279270..2279305,2279364..2280062,2280822..2280955, 2281011..2281215) /gene="5C761" /locus_tag="5C761" /codon_start=1 /product="putative mitochondrial protein (5C761)" /protein_id="17564780" /db_xref="GI:17564780" /db_xref="AceView/WormGenes:5C761" /db_xref="LocusID:188978" // > 11790_NC_003283 protein_id:17564774; Caenorhabditis elegans chromosome V, complete sequence. /gene="nhr-115"; intron(phase:221020,position:33,54,74,203,267,367); exon(number:7,size:32,21,20,129,64,100,35,sum:401); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2292424..2292521,2292566..2292628,2292687..2292745, 2292791..2293176,2293233..2293426,2294113..2294410, 2294457..2294564) /gene="nhr-115" /locus_tag="5C771" /codon_start=1 /evidence=experimental /product="nuclear Hormone Receptor (nhr-115)" /protein_id="17564774" /db_xref="GI:17564774" /db_xref="AceView/WormGenes:nhr-115" /db_xref="LocusID:178708" // > 11807_NC_003283 protein_id:17559724; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C818"; intron(phase:1001,position:36,130,173,221); exon(number:5,size:35,94,43,48,39,sum:259); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2341846..2341964,2342305..2342449, 2343066..2343194,2343894..2344174,2344225..2344330)) /gene="5C818" /locus_tag="5C818" /codon_start=1 /product="epidermal growth-factor receptor , L domain containing protein family member (5C818)" /protein_id="17559724" /db_xref="GI:17559724" /db_xref="AceView/WormGenes:5C818" /db_xref="LocusID:184540" // > 11823_NC_003283 protein_id:17557862; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C901"; intron(phase:0221,position:50,74,116,147); exon(number:5,size:49,24,42,31,47,sum:193); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2421695..2421841,2421894..2421967,2422015..2422140, 2422194..2422285,2422581..2422723) /gene="5C901" /locus_tag="5C901" /codon_start=1 /product="putative nuclear protein, with a coiled coil domain (5C901)" /protein_id="17557862" /db_xref="GI:17557862" /db_xref="AceView/WormGenes:5C901" /db_xref="LocusID:178719" // > 11832_NC_003283 protein_id:25153666; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C927"; intron(phase:11,position:13,78); exon(number:3,size:12,65,28,sum:105); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2453255..2453291,2453341..2453535,2455827..2455912) /gene="5C927" /locus_tag="5C927" /codon_start=1 /product="glutathione S-transferase, N-terminal family member (5C927)" /protein_id="25153666" /db_xref="GI:25153666" /db_xref="AceView/WormGenes:5C927" /db_xref="LocusID:186346" // > 11834_NC_003283 protein_id:17561496; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C930"; intron(phase:10010,position:39,131,219,340,362); exon(number:6,size:38,92,88,121,22,101,sum:462); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2456004..2456309,2456368..2456432, 2456480..2456843,2457350..2457613,2457656..2457930, 2458000..2458114)) /gene="5C930" /locus_tag="5C930" /codon_start=1 /product="epidermal growth-factor receptor , L domain containing protein family member (5C930)" /protein_id="17561496" /db_xref="GI:17561496" /db_xref="AceView/WormGenes:5C930" /db_xref="LocusID:186352" // > 11837_NC_003283 protein_id:17561500; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C948"; intron(phase:2122211000,position:34,113,272,286,326,362,518,613,667,706); exon(number:11,size:33,79,159,14,40,36,156,95,54,39,41,sum:746); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2469516..2469641,2469694..2469810, 2469866..2470027,2470075..2470358,2471629..2472096, 2473134..2473240,2473288..2473407,2474221..2474262, 2474303..2474780,2474995..2475230,2475312..2475412)) /gene="5C948" /locus_tag="5C948" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 17 transmembrane domains, of ancient origin (5C948)" /protein_id="17561500" /db_xref="GI:17561500" /db_xref="AceView/WormGenes:5C948" /db_xref="LocusID:186354" // > 11841_NC_003283 protein_id:17557430; Caenorhabditis elegans chromosome V, complete sequence. /gene="5C977"; intron(phase:2120200,position:45,80,118,190,239,341,434); exon(number:8,size:44,35,38,72,49,102,93,42,sum:475); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2494063..2494196,2494245..2494348,2494396..2494510, 2495286..2495499,2495558..2495706,2496469..2496772, 2497389..2497667,2498701..2498829) /gene="5C977" /locus_tag="5C977" /codon_start=1 /evidence=experimental /product="putative endoplasmic reticulum protein family member, with at least 9 transmembrane domains, of ancient origin (53.1 kD) (5C977)" /protein_id="17557430" /db_xref="GI:17557430" /db_xref="AceView/WormGenes:5C977" /db_xref="LocusID:178722" // > 11852_NC_003283 protein_id:17565776; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D19"; intron(phase:02201,position:64,119,164,187,252); exon(number:6,size:63,55,45,23,65,23,sum:274); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2539912..2540100,2540791..2540957,2541010..2541144, 2541196..2541262,2542501..2542696,2542762..2542832) /gene="5D19" /locus_tag="5D19" /codon_start=1 /product="predicted CDS, 7TM chemoreceptor, subfamily 1 (5D19)" /protein_id="17565776" /db_xref="GI:17565776" /db_xref="AceView/WormGenes:5D19" /db_xref="LocusID:189935" // > 11882_NC_003283 protein_id:17564994; Caenorhabditis elegans chromosome V, complete sequence. /gene="ndx-2"; intron(phase:02,position:59,141); exon(number:3,size:58,82,83,sum:223); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2662908..2663157,2664204..2664451, 2664615..2664788)) /gene="ndx-2" /locus_tag="5D142" /codon_start=1 /evidence=experimental /product="NuDiX hydrolase (ndx-2)" /protein_id="17564994" /db_xref="GI:17564994" /db_xref="AceView/WormGenes:ndx-2" /db_xref="LocusID:189126" // > 11930_NC_003283 protein_id:17563476; Caenorhabditis elegans chromosome V, complete sequence. /gene="srj-54"; intron(phase:0002,position:64,187,221,277); exon(number:5,size:63,123,34,56,52,sum:328); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2858487..2858643,2858689..2858858, 2858907..2859008,2859056..2859424,2859477..2859665)) /gene="srj-54" /locus_tag="5D336" /codon_start=1 /product="predicted CDS, serpentine Receptor, class J (srj-54)" /protein_id="17563476" /db_xref="GI:17563476" /db_xref="AceView/WormGenes:srj-54" /db_xref="LocusID:191953" // > 11934_NC_003283 protein_id:17563406; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-241"; intron(phase:10,position:110,250); exon(number:3,size:109,140,86,sum:335); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2867619..2867879,2867924..2868342, 2869103..2869430)) /gene="srh-241" /locus_tag="5D344" /codon_start=1 /product="serpentine Receptor, class H (srh-241)" /protein_id="17563406" /db_xref="GI:17563406" /db_xref="AceView/WormGenes:srh-241" /db_xref="LocusID:191890" // > 11938_NC_003283 protein_id:17563518; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-39"; intron(phase:2,position:164); exon(number:2,size:163,166,sum:329); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2877631..2878129,2879238..2879728)) /gene="str-39" /locus_tag="5D356" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-39)" /protein_id="17563518" /db_xref="GI:17563518" /db_xref="AceView/WormGenes:str-39" /db_xref="LocusID:191975" // > 11951_NC_003283 protein_id:17558348; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D409"; intron(phase:0001,position:98,137,255,283); exon(number:5,size:97,39,118,28,61,sum:343); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(2931352..2931642,2931689..2931805,2931981..2932334, 2932488..2932572,2932631..2932815) /gene="5D409" /locus_tag="5D409" /codon_start=1 /product="7TM chemoreceptor, subfamily 2 (5D409)" /protein_id="17558348" /db_xref="GI:17558348" /db_xref="AceView/WormGenes:5D409" /db_xref="LocusID:183076" // > 11960_NC_003283 protein_id:17561856; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-142"; intron(phase:2020,position:30,230,304,357); exon(number:5,size:29,200,74,53,10,sum:366); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2956843..2956875,2956909..2957065, 2957111..2957334,2957398..2957995,2958041..2958129)) /gene="srw-142" /locus_tag="5D430" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-142)" /protein_id="17561856" /db_xref="GI:17561856" /db_xref="AceView/WormGenes:srw-142" /db_xref="LocusID:186692" // > 11972_NC_003283 protein_id:17562558; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-120"; intron(phase:12020,position:7,42,240,314,362); exon(number:6,size:6,35,198,74,48,19,sum:380); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(2994726..2994785,2994835..2994976, 2995024..2995247,2995297..2995888,2995938..2996043, 2996107..2996125)) /gene="srw-120" /locus_tag="5D470" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-120)" /protein_id="17562558" /db_xref="GI:17562558" /db_xref="AceView/WormGenes:srw-120" /db_xref="LocusID:187326" // > 12003_NC_003283 protein_id:17558844; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D574"; intron(phase:000,position:80,138,206); exon(number:4,size:79,58,68,101,sum:306); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3096957..3097262,3097575..3097778, 3098055..3098228,3098279..3098515)) /gene="5D574" /locus_tag="5D574" /codon_start=1 /product="putative protein family member, with a coiled coil-4 domain (5D574)" /protein_id="17558844" /db_xref="GI:17558844" /db_xref="AceView/WormGenes:5D574" /db_xref="LocusID:183702" // > 12031_NC_003283 protein_id:17558436; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D649"; intron(phase:2201,position:76,164,213,278); exon(number:5,size:75,88,49,65,51,sum:328); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(3179354..3179580,3179940..3180203,3180262..3180406, 3180457..3180652,3180735..3180889) /gene="5D649" /locus_tag="5D649" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 5 transmembrane domains (5D649)" /protein_id="17558436" /db_xref="GI:17558436" /db_xref="AceView/WormGenes:5D649" /db_xref="LocusID:183257" // > 12072_NC_003283 protein_id:17560590; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D792"; intron(phase:2011,position:62,98,152,424); exon(number:5,size:61,36,54,272,48,sum:471); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3313300..3313445,3313500..3314315, 3314368..3314530,3314671..3314776,3314876..3315060)) /gene="5D792" /locus_tag="5D792" /codon_start=1 /evidence=experimental /product="ARRestin and ARRestin family member (51.5 kD) (5D792)" /protein_id="17560590" /db_xref="GI:17560590" /db_xref="AceView/WormGenes:5D792" /db_xref="LocusID:178764" // > 12092_NC_003283 protein_id:17557612; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D850"; intron(phase:020102,position:31,84,140,159,214,280); exon(number:7,size:30,53,56,19,55,66,58,sum:337); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3370768..3370942,3370994..3371193, 3371258..3371421,3371469..3371526,3371578..3371743, 3372268..3372428,3372471..3372560)) /gene="5D850" /locus_tag="5D850" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 5 transmembrane domains (5D850)" /protein_id="17557612" /db_xref="GI:17557612" /db_xref="AceView/WormGenes:5D850" /db_xref="LocusID:182213" // > 12125_NC_003283 protein_id:17557480; Caenorhabditis elegans chromosome V, complete sequence. /gene="5D962"; intron(phase:210002100,position:46,72,193,227,262,274,315,436,503); exon(number:10,size:45,26,121,34,35,12,41,121,67,51,sum:553); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3482917..3483072,3483163..3483363, 3483416..3483777,3483881..3484002,3485612..3485649, 3485699..3485803,3485849..3485950,3486001..3486362, 3486411..3486487,3486632..3486768)) /gene="5D962" /locus_tag="5D962" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 9 transmembrane domains (5D962)" /protein_id="17557480" /db_xref="GI:17557480" /db_xref="AceView/WormGenes:5D962" /db_xref="LocusID:182097" // > 12134_NC_003283 protein_id:17563626; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-227"; intron(phase:02201,position:67,122,167,215,319); exon(number:6,size:66,55,45,48,104,33,sum:351); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(3518015..3518212,3518575..3518741,3518791..3518925, 3518975..3519116,3519166..3519478,3519527..3519627) /gene="str-227" /locus_tag="5D995" /codon_start=1 /product="seven TM Receptor (str-227)" /protein_id="17563626" /db_xref="GI:17563626" /db_xref="AceView/WormGenes:str-227" /db_xref="LocusID:192037" // > 12145_NC_003283 protein_id:17564658; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-130"; intron(phase:2020,position:33,232,303,351); exon(number:5,size:32,199,71,48,26,sum:376); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3546795..3546875,3546936..3547077, 3547123..3547337,3547985..3548579,3548627..3548724)) /gene="srw-130" /locus_tag="5E24" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-130)" /protein_id="17564658" /db_xref="GI:17564658" /db_xref="AceView/WormGenes:srw-130" /db_xref="LocusID:188831" // > 12153_NC_003283 protein_id:17564636; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E39"; intron(phase:022,position:15,64,92); exon(number:4,size:14,49,28,33,sum:124); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(3558942..3558983,3559037..3559185,3559477..3559560, 3560247..3560346) /gene="5E39" /locus_tag="5E39" /codon_start=1 /product="putative protein (5E39)" /protein_id="17564636" /db_xref="GI:17564636" /db_xref="AceView/WormGenes:5E39" /db_xref="LocusID:188821" // > 12158_NC_003283 protein_id:17560760; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E52"; intron(phase:200,position:49,81,112); exon(number:4,size:48,32,31,28,sum:139); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3574944..3575030,3575089..3575181, 3575396..3575489,3575532..3575677)) /gene="5E52" /locus_tag="5E52" /codon_start=1 /product="putative secreted or extracellular protein family member precursor (5E52)" /protein_id="17560760" /db_xref="GI:17560760" /db_xref="AceView/WormGenes:5E52" /db_xref="LocusID:185516" // > 12186_NC_003283 protein_id:17564784; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E204"; intron(phase:2101002000,position:25,37,118,148,216,337,373,473,513,608); exon(number:11,size:24,12,81,30,68,121,36,100,40,95,36,sum:643); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3727297..3727407,3727763..3728047, 3728459..3728578,3728629..3728926,3728978..3729087, 3729132..3729494,3730102..3730304,3730357..3730447, 3730496..3730737,3731416..3731450,3731510..3731583)) /gene="5E204" /locus_tag="5E204" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil-4 domain (5E204)" /protein_id="17564784" /db_xref="GI:17564784" /db_xref="AceView/WormGenes:5E204" /db_xref="LocusID:188979" // > 12188_NC_003283 protein_id:17565596; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E214"; intron(phase:21,position:26,78); exon(number:3,size:25,52,43,sum:120); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3738619..3738749,3739057..3739211, 3739317..3739393)) /gene="5E214" /locus_tag="5E214" /codon_start=1 /product="predicted CDS, putative secreted or extracellular protein precursor (5E214)" /protein_id="17565596" /db_xref="GI:17565596" /db_xref="AceView/WormGenes:5E214" /db_xref="LocusID:189775" // > 12197_NC_003283 protein_id:17562976; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E252"; intron(phase:1212121111221,position:13,62,110,271,334,385,486,521,557,635,659,772,804); exon(number:14,size:12,49,48,161,63,51,101,35,36,78,24,113,32,81,sum:884); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3777199..3777443,3778938..3779032, 3779087..3779425,3779844..3779916,3779962..3780195, 3780377..3780484,3781035..3781139,3781187..3781488, 3781537..3781690,3781743..3781930,3782273..3782756, 3783116..3783258,3783888..3784035,3784450..3784486)) /gene="5E252" /locus_tag="5E252" /codon_start=1 /product="predicted CDS, bile acid beta-glucosidase (5E252)" /protein_id="17562976" /db_xref="GI:17562976" /db_xref="AceView/WormGenes:5E252" /db_xref="LocusID:187703" // > 12215_NC_003283 protein_id:17561108; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E334"; intron(phase:101021,position:8,83,115,237,277,319); exon(number:7,size:7,75,32,122,40,42,84,sum:402); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3858274..3858527,3858590..3858714, 3858760..3858881,3859341..3859705,3859752..3859848, 3859912..3860135,3860188..3860209)) /gene="5E334" /locus_tag="5E334" /codon_start=1 /product="nuclear receptor NHR-15 like family member (5E334)" /protein_id="17561108" /db_xref="GI:17561108" /db_xref="AceView/WormGenes:5E334" /db_xref="LocusID:185913" // > 12216_NC_003283 protein_id:17561102; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E336"; intron(phase:010021,position:41,72,157,194,236,278); exon(number:7,size:40,31,85,37,42,42,80,sum:357); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(3860902..3861143,3861200..3861324, 3861380..3861507,3861725..3861835,3861888..3862141, 3862491..3862584,3862627..3862746)) /gene="5E336" /locus_tag="5E336" /codon_start=1 /product="nuclear receptor NHR-51 like family member, possibly N-myristoylated (5E336)" /protein_id="17561102" /db_xref="GI:17561102" /db_xref="AceView/WormGenes:5E336" /db_xref="LocusID:185910" // > 12233_NC_003283 protein_id:17562322; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E391"; intron(phase:210,position:67,141,267); exon(number:4,size:66,74,126,46,sum:312); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(3919402..3919601,3919835..3920055,3920103..3920479, 3920526..3920666) /gene="5E391" /locus_tag="5E391" /codon_start=1 /product="putative protein family member, with at least 6 transmembrane domains (5E391)" /protein_id="17562322" /db_xref="GI:17562322" /db_xref="AceView/WormGenes:5E391" /db_xref="LocusID:187097" // > 12237_NC_003283 protein_id:17562316; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E403"; intron(phase:212,position:67,141,265); exon(number:4,size:66,74,124,61,sum:325); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(3931439..3931638,3932230..3932450,3932502..3932874, 3933479..3933662) /gene="5E403" /locus_tag="5E403" /codon_start=1 /product="predicted CDS, putative endoplasmic reticulum protein family member, with at least 4 transmembrane domains (5E403)" /protein_id="17562316" /db_xref="GI:17562316" /db_xref="AceView/WormGenes:5E403" /db_xref="LocusID:187094" // > 12270_NC_003283 protein_id:17558710; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E503"; intron(phase:11200,position:93,132,190,208,224); exon(number:6,size:92,39,58,18,16,85,sum:308); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4028178..4028454,4028506..4028622,4028707..4028881, 4028925..4028976,4030615..4030662,4030704..4030961) /gene="5E503" /locus_tag="5E503" /codon_start=1 /product="predicted CDS, putative protein family member (5E503)" /protein_id="17558710" /db_xref="GI:17558710" /db_xref="AceView/WormGenes:5E503" /db_xref="LocusID:183623" // > 12274_NC_003283 protein_id:17558704; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E513"; intron(phase:11,position:12,67); exon(number:3,size:11,55,61,sum:127); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4041098..4041131,4041218..4041382,4041523..4041707) /gene="5E513" /locus_tag="5E513" /codon_start=1 /product="putative protein (5E513)" /protein_id="17558704" /db_xref="GI:17558704" /db_xref="AceView/WormGenes:5E513" /db_xref="LocusID:183620" // > 12277_NC_003283 protein_id:17558698; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E525"; intron(phase:01,position:34,121); exon(number:3,size:33,87,128,sum:248); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4046255..4046353,4046405..4046666,4046714..4047099) /gene="5E525" /locus_tag="5E525" /codon_start=1 /evidence=experimental /product="metridin-like ShK toxin family member (25.9 kD) (5E525)" /protein_id="17558698" /db_xref="GI:17558698" /db_xref="AceView/WormGenes:5E525" /db_xref="LocusID:178810" // > 12289_NC_003283 protein_id:17563856; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-132"; intron(phase:0202020,position:44,72,128,170,370,444,492); exon(number:8,size:43,28,56,42,200,74,48,15,sum:506); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(4106186..4106233,4106281..4106422, 4106468..4106691,4107219..4107816,4108543..4108670, 4108738..4108903,4109416..4109501,4109552..4109680)) /gene="srw-132" /locus_tag="5E576" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-132)" /protein_id="17563856" /db_xref="GI:17563856" /db_xref="AceView/WormGenes:srw-132" /db_xref="LocusID:188101" // > 12299_NC_003283 protein_id:17563852; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E609"; intron(phase:01,position:31,118); exon(number:3,size:30,87,131,sum:248); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4129751..4129840,4129900..4130161,4130216..4130610) /gene="5E609" /locus_tag="5E609" /codon_start=1 /evidence=experimental /product="metridin-like ShK toxin family member (25.7 kD) (5E609)" /protein_id="17563852" /db_xref="GI:17563852" /db_xref="AceView/WormGenes:5E609" /db_xref="LocusID:178812" // > 12307_NC_003283 protein_id:25149105; Caenorhabditis elegans chromosome V, complete sequence. /gene="5E659"; intron(phase:1100002010210,position:29,77,111,181,358,406,443,490,656,778,824,945,1003); exon(number:14,size:28,48,34,70,177,48,37,47,166,122,46,121,58,59,sum:1061); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4175738..4175822,4175873..4176016,4176065..4176165, 4176227..4176436,4176476..4177006,4177792..4177935, 4177983..4178095,4178788..4178926,4178973..4179471, 4179539..4179903,4179953..4180092,4180144..4180505, 4180559..4180731,4180784..4180963) /gene="5E659" /locus_tag="5E659" /codon_start=1 /evidence=experimental /product="aminopeptidase P AP-P (122.6 kD) (5E659)" /protein_id="25149105" /db_xref="GI:25149105" /db_xref="AceView/WormGenes:5E659" /db_xref="LocusID:178819" // > 12378_NC_003283 protein_id:25149136; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F42"; intron(phase:02220220,position:18,123,158,235,496,526,664,692); exon(number:9,size:17,105,35,77,261,30,138,28,49,sum:740); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(4562464..4562613,4562669..4562750, 4564181..4564594,4566016..4566107,4566338..4567118, 4568113..4568343,4569249..4569353,4569413..4569729, 4569791..4569841)) /gene="5F42" /locus_tag="5F42" /codon_start=1 /evidence=experimental /product="nuclear protein UKp83 (82.8 kD) (5F42)" /protein_id="25149136" /db_xref="GI:25149136" /db_xref="AceView/WormGenes:5F42" /db_xref="LocusID:178847" // > 12380_NC_003283 protein_id:25149145; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F79"; intron(phase:000000,position:32,89,131,290,413,476); exon(number:7,size:31,57,42,159,123,63,51,sum:526); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4592747..4592839,4598006..4598176,4598708..4598833, 4598882..4599358,4600123..4600491,4600550..4600738, 4601261..4601416) /gene="5F79" /locus_tag="5F79" /codon_start=1 /evidence=experimental /product="glucose transporter 1A (58.4 kD) (5F79)" /protein_id="25149145" /db_xref="GI:25149145" /db_xref="AceView/WormGenes:5F79" /db_xref="LocusID:178849" // > 12398_NC_003283 protein_id:17562118; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F170"; intron(phase:0,position:59); exon(number:2,size:58,57,sum:115); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(4691569..4691742,4692052..4692225)) /gene="5F170" /locus_tag="5F170" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (12.2 kD) (5F170)" /protein_id="17562118" /db_xref="GI:17562118" /db_xref="AceView/WormGenes:5F170" /db_xref="LocusID:178860" // > 12400_NC_003283 protein_id:17566622; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F176"; intron(phase:02,position:30,107); exon(number:3,size:29,77,28,sum:134); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(4699782..4699866,4699931..4700163, 4700207..4700293)) /gene="5F176" /locus_tag="5F176" /codon_start=1 /product="putative protein (5F176)" /protein_id="17566622" /db_xref="GI:17566622" /db_xref="AceView/WormGenes:5F176" /db_xref="LocusID:191134" // > 12419_NC_003283 protein_id:32567037; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F267"; intron(phase:2202211012022021,position:44,116,165,187,257,302,319,342,397,504,566,586,637,680,717,742); exon(number:17,size:43,72,49,22,70,45,17,23,55,107,62,20,51,43,37,25,51,sum:792); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4787280..4787410,4787754..4787969,4788013..4788157, 4789056..4789123,4789426..4789635,4789679..4789812, 4790498..4790548,4790598..4790665,4790712..4790877, 4790933..4791254,4792762..4792945,4794612..4794673, 4794985..4795137,4795434..4795560,4795609..4795721, 4795769..4795842,4796531..4796685) /gene="5F267" /locus_tag="5F267" /codon_start=1 /evidence=experimental /product="protein of unknown function CX and c-type lectin family member (5F267)" /protein_id="32567037" /db_xref="GI:32567037" /db_xref="AceView/WormGenes:5F267" /db_xref="LocusID:187531" // > 12427_NC_003283 protein_id:17558502; Caenorhabditis elegans chromosome V, complete sequence. /gene="cwp-1"; intron(phase:00,position:23,52); exon(number:3,size:22,29,57,sum:108); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(4840481..4840654,4840881..4840967, 4841014..4841079)) /gene="cwp-1" /locus_tag="5F318" /codon_start=1 /evidence=experimental /product="coexpressed With Polycystins (cwp-1)" /protein_id="17558502" /db_xref="GI:17558502" /db_xref="AceView/WormGenes:cwp-1" /db_xref="LocusID:178876" // > 12437_NC_003283 protein_id:17564448; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F352"; intron(phase:1212122,position:17,94,198,287,465,547,606); exon(number:8,size:16,77,104,89,178,82,59,14,sum:619); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(4874737..4874779,4874825..4875001, 4875054..4875300,4875383..4875915,4876262..4876529, 4876573..4876883,4878772..4879003,4879058..4879106)) /gene="5F352" /locus_tag="5F352" /codon_start=1 /product="predicted CDS, gamma-glutamyltranspeptidase family member (5F352)" /protein_id="17564448" /db_xref="GI:17564448" /db_xref="AceView/WormGenes:5F352" /db_xref="LocusID:188617" // > 12448_NC_003283 protein_id:17561924; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F383"; intron(phase:00112,position:51,74,126,156,474); exon(number:6,size:50,23,52,30,318,58,sum:531); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(4906097..4906246,4906289..4906357,4906527..4906683, 4906733..4906822,4906871..4907825,4907898..4908072) /gene="5F383" /locus_tag="5F383" /codon_start=1 /product="UDP-glucoronosyl/UDP-glucosyl transferase family member (5F383)" /protein_id="17561924" /db_xref="GI:17561924" /db_xref="AceView/WormGenes:5F383" /db_xref="LocusID:186767" // > 12490_NC_003283 protein_id:17566028; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F544"; intron(phase:12,position:23,66); exon(number:3,size:22,43,65,sum:130); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5067600..5067795,5067849..5067978, 5068362..5068428)) /gene="5F544" /locus_tag="5F544" /codon_start=1 /product="ctr copper transporter (5F544)" /protein_id="17566028" /db_xref="GI:17566028" /db_xref="AceView/WormGenes:5F544" /db_xref="LocusID:190381" // > 12494_NC_003283 protein_id:17566038; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F566"; intron(phase:0010,position:28,57,111,207); exon(number:5,size:27,29,54,96,50,sum:256); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5087573..5087725,5087972..5088258, 5088347..5088509,5089075..5089161,5089210..5089290)) /gene="5F566" /locus_tag="5F566" /codon_start=1 /product="globin (5F566)" /protein_id="17566038" /db_xref="GI:17566038" /db_xref="AceView/WormGenes:5F566" /db_xref="LocusID:190384" // > 12517_NC_003283 protein_id:17557524; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F642"; intron(phase:0000120,position:40,92,134,204,243,276,304); exon(number:8,size:39,52,42,70,39,33,28,91,sum:394); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5167552..5167827,5168225..5168306, 5168354..5168453,5168564..5168681,5168725..5168934, 5168978..5169103,5169163..5169318,5169368..5169484)) /gene="5F642" /locus_tag="5F642" /codon_start=1 /product="putative protein family member, with at least 7 transmembrane domains (5F642)" /protein_id="17557524" /db_xref="GI:17557524" /db_xref="AceView/WormGenes:5F642" /db_xref="LocusID:182140" // > 12528_NC_003283 protein_id:17558862; Caenorhabditis elegans chromosome V, complete sequence. /gene="5F708"; intron(phase:000211102,position:32,86,115,144,226,267,337,392,482); exon(number:10,size:31,54,29,29,82,41,70,55,90,64,sum:545); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gcag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5230331..5230523,5231233..5231504, 5231548..5231711,5232110..5232319,5232370..5232492, 5232541..5232785,5232834..5232922,5232968..5233054, 5233100..5233261,5233574..5233666)) /gene="5F708" /locus_tag="5F708" /codon_start=1 /evidence=experimental /product="carboxylesterase, type B family member, possibly N-myristoylated (61.5 kD) (5F708)" /protein_id="17558862" /db_xref="GI:17558862" /db_xref="AceView/WormGenes:5F708" /db_xref="LocusID:178909" // > 12576_NC_003283 protein_id:32567166; Caenorhabditis elegans chromosome V, complete sequence. /gene="srg-67"; intron(phase:0010,position:64,136,217,278); exon(number:5,size:63,72,81,61,40,sum:317); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5461340..5461462,5461509..5461690, 5461745..5461988,5462356..5462571,5462618..5462806)) /gene="srg-67" /locus_tag="5F938" /codon_start=1 /product="predicted CDS, serpentine Receptor, class G (gamma) (srg-67)" /protein_id="32567166" /db_xref="GI:32567166" /db_xref="AceView/WormGenes:srg-67" /db_xref="LocusID:191140" // > 12620_NC_003283 protein_id:17557978; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G129"; intron(phase:1021021021121,position:29,66,102,140,178,210,247,297,321,358,390,428,469); exon(number:14,size:28,37,36,38,38,32,37,50,24,37,32,38,41,23,sum:491); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(5650246..5650330,5650378..5650487,5650541..5650650, 5650699..5650811,5650858..5650970,5651301..5651398, 5651629..5651738,5651786..5651934,5652000..5652073, 5652157..5652266,5652320..5652415,5652460..5652574, 5653183..5653304,5653400..5653470) /gene="5G129" /locus_tag="5G129" /codon_start=1 /evidence=experimental /product="putative membrane protein family member (54.6 kD) (5G129)" /protein_id="17557978" /db_xref="GI:17557978" /db_xref="AceView/WormGenes:5G129" /db_xref="LocusID:178950" // > 12622_NC_003283 protein_id:17557982; Caenorhabditis elegans chromosome V, complete sequence. /gene="mut-14"; intron(phase:1100,position:46,222,392,448); exon(number:5,size:45,176,170,56,81,sum:528); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5661469..5661714,5661763..5661930, 5661979..5662487,5662577..5663104,5663164..5663299)) /gene="mut-14" /locus_tag="5G140" /codon_start=1 /evidence=experimental /product="MUTator MUT-14, dead box family member (59.1 kD) (mut-14)" /protein_id="17557982" /db_xref="GI:17557982" /db_xref="AceView/WormGenes:mut-14" /db_xref="LocusID:178952" // > 12636_NC_003283 protein_id:17562452; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G202"; intron(phase:1211,position:22,57,186,405); exon(number:5,size:21,35,129,219,226,sum:630); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5725674..5726353,5726424..5727080, 5727365..5727750,5727819..5727924,5729077..5729140)) /gene="5G202" /locus_tag="5G202" /codon_start=1 /product="putative protein (5G202)" /protein_id="17562452" /db_xref="GI:17562452" /db_xref="AceView/WormGenes:5G202" /db_xref="LocusID:187244" // > 12641_NC_003283 protein_id:17562458; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G232"; intron(phase:12,position:38,262); exon(number:3,size:37,224,61,sum:322); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5755058..5755241,5755293..5755965, 5756016..5756127)) /gene="5G232" /locus_tag="5G232" /codon_start=1 /product="phosphoglycolate phosphatase (5G232)" /protein_id="17562458" /db_xref="GI:17562458" /db_xref="AceView/WormGenes:5G232" /db_xref="LocusID:178963" // > 12648_NC_003283 protein_id:17560964; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G262"; intron(phase:2200,position:60,89,131,262); exon(number:5,size:59,29,42,131,68,sum:329); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5783911..5784117,5784162..5784554, 5784672..5784795,5784841..5784927,5784975..5785153)) /gene="5G262" /locus_tag="5G262" /codon_start=1 /product="cyclin-like F-box and Protein of unknown function DUF38 family member (5G262)" /protein_id="17560964" /db_xref="GI:17560964" /db_xref="AceView/WormGenes:5G262" /db_xref="LocusID:185738" // > 12669_NC_003283 protein_id:17563298; Caenorhabditis elegans chromosome V, complete sequence. /gene="srd-15"; intron(phase:220012,position:68,97,149,242,263,305); exon(number:7,size:67,29,52,93,21,42,33,sum:337); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(5907609..5907708,5907754..5907880, 5907952..5908015,5908060..5908338,5908387..5908540, 5908586..5908672,5908743..5908945)) /gene="srd-15" /locus_tag="5G384" /codon_start=1 /product="predicted CDS, serpentine Receptor, class D (delta) (srd-15)" /protein_id="17563298" /db_xref="GI:17563298" /db_xref="AceView/WormGenes:srd-15" /db_xref="LocusID:191804" // > 12713_NC_003283 protein_id:17559796; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G595"; intron(phase:2220,position:66,94,120,199); exon(number:5,size:65,28,26,79,79,sum:277); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(6119115..6119311,6119361..6119444,6119575..6119652, 6119922..6120156,6120202..6120441) /gene="5G595" /locus_tag="5G595" /codon_start=1 /product="putative cytoplasmic protein family member (5G595)" /protein_id="17559796" /db_xref="GI:17559796" /db_xref="AceView/WormGenes:5G595" /db_xref="LocusID:184610" // > 12732_NC_003283 protein_id:17560428; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G748"; intron(phase:02,position:82,102); exon(number:3,size:81,20,73,sum:174); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6271159..6271378,6271555..6271616, 6272833..6273075)) /gene="5G748" /locus_tag="5G748" /codon_start=1 /product="predicted CDS, putative protein (5G748)" /protein_id="17560428" /db_xref="GI:17560428" /db_xref="AceView/WormGenes:5G748" /db_xref="LocusID:185180" // > 12746_NC_003283 protein_id:17564866; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G809"; intron(phase:2000222,position:16,61,84,182,271,318,436); exon(number:8,size:15,45,23,98,89,47,118,50,sum:485); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(6331808..6331854,6331902..6332034,6332081..6332149, 6332198..6332491,6332536..6332804,6332852..6332992, 6333038..6333391,6333435..6333585) /gene="5G809" /locus_tag="5G809" /codon_start=1 /evidence=experimental /product="putative protein family member, with at least 9 transmembrane domains, of eukaryotic origin (5G809)" /protein_id="17564866" /db_xref="GI:17564866" /db_xref="AceView/WormGenes:5G809" /db_xref="LocusID:179018" // > 12748_NC_003283 protein_id:17564876; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G812"; intron(phase:2012121,position:53,90,117,157,181,244,286); exon(number:8,size:52,37,27,40,24,63,42,48,sum:333); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6337592..6337737,6337792..6337916, 6338098..6338287,6338341..6338411,6338461..6338581, 6338636..6338717,6339146..6339254,6339341..6339498)) /gene="5G812" /locus_tag="5G812" /codon_start=1 /product="predicted CDS, whey acidic protein, core region (5G812)" /protein_id="17564876" /db_xref="GI:17564876" /db_xref="AceView/WormGenes:5G812" /db_xref="LocusID:189040" // > 12751_NC_003283 protein_id:17559618; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G846"; intron(phase:10021012,position:39,64,93,123,205,265,393,436); exon(number:9,size:38,25,29,30,82,60,128,43,69,sum:504); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6369033..6369240,6369359..6369488, 6369535..6369919,6370008..6370186,6370254..6370498, 6370542..6370633,6370705..6370791,6370839..6370912, 6371019..6371133)) /gene="5G846" /locus_tag="5G846" /codon_start=1 /product="esterase cm06b1 family member, possibly N-myristoylated (5G846)" /protein_id="17559618" /db_xref="GI:17559618" /db_xref="AceView/WormGenes:5G846" /db_xref="LocusID:184435" // > 12774_NC_003283 protein_id:17564946; Caenorhabditis elegans chromosome V, complete sequence. /gene="5G979"; intron(phase:0022,position:60,96,241,314); exon(number:5,size:59,36,145,73,46,sum:359); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(6499710..6499886,6499936..6500043,6500090..6500526, 6500581..6500799,6500853..6500991) /gene="5G979" /locus_tag="5G979" /codon_start=1 /product="diacylglycerol O-acyltransferase 2 (5G979)" /protein_id="17564946" /db_xref="GI:17564946" /db_xref="AceView/WormGenes:5G979" /db_xref="LocusID:189077" // > 12786_NC_003283 protein_id:17561066; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H12"; intron(phase:11,position:55,152); exon(number:3,size:54,97,27,sum:178); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6534688..6534770,6534818..6535108, 6535491..6535653)) /gene="5H12" /locus_tag="5H12" /codon_start=1 /evidence=experimental /product="putative protein (5H12)" /protein_id="17561066" /db_xref="GI:17561066" /db_xref="AceView/WormGenes:5H12" /db_xref="LocusID:179044" // > 12799_NC_003283 protein_id:17566990; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H65"; intron(phase:201121,position:22,117,151,170,251,329); exon(number:7,size:21,95,34,19,81,78,41,sum:369); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(6583480..6583544,6585001..6585283,6585333..6585435, 6585555..6585611,6585919..6586162,6586208..6586440, 6586866..6586990) /gene="5H65" /locus_tag="5H65" /codon_start=1 /product="predicted CDS, putative protein family member (5H65)" /protein_id="17566990" /db_xref="GI:17566990" /db_xref="AceView/WormGenes:5H65" /db_xref="LocusID:191514" // > 12807_NC_003283 protein_id:17559068; Caenorhabditis elegans chromosome V, complete sequence. /gene="cpr-4"; intron(phase:0,position:2); exon(number:2,size:1,334,sum:335); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(6617312..6617314,6617364..6618368) /gene="cpr-4" /locus_tag="5H95" /codon_start=1 /evidence=experimental /product="cysteine PRotease related (36.5 kD) (cpr-4)" /protein_id="17559068" /db_xref="GI:17559068" /db_xref="AceView/WormGenes:cpr-4" /db_xref="LocusID:179053" // > 12819_NC_003283 protein_id:17559246; Caenorhabditis elegans chromosome V, complete sequence. /gene="egl-46"; intron(phase:0000,position:85,136,162,216); exon(number:5,size:84,51,26,54,71,sum:286); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6682258..6682473,6682902..6683063, 6683145..6683222,6683543..6683695,6683917..6684168)) /gene="egl-46" /locus_tag="5H160" /codon_start=1 /evidence=experimental /product="nervous fingers, EGg Laying defective EGL-46 (32.5 kD) (egl-46)" /protein_id="17559246" /db_xref="GI:17559246" /db_xref="AceView/WormGenes:egl-46" /db_xref="LocusID:179058" // > 12825_NC_003283 protein_id:25146366; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H188"; intron(phase:011020,position:20,33,60,146,269,420); exon(number:7,size:19,13,27,86,123,151,44,sum:463); {splice:gtag,gtag,gtag,gtag,gtag,gcag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6709896..6710030,6710175..6710625, 6710676..6711046,6711104..6711360,6711412..6711492, 6711540..6711579,6711635..6711691)) /gene="5H188" /locus_tag="5H188" /codon_start=1 /evidence=experimental /product="dihydrolipoamide S-succinyltransferase (49.8 kD) (5H188)" /protein_id="25146366" /db_xref="GI:25146366" /db_xref="AceView/WormGenes:5H188" /db_xref="LocusID:179063" // > 12828_NC_003283 protein_id:17566724; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H198"; intron(phase:02101,position:40,141,176,228,266); exon(number:6,size:39,101,35,52,38,52,sum:317); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6722998..6723155,6723203..6723317, 6723783..6723937,6724620..6724723,6724775..6725079, 6725490..6725606)) /gene="5H198" /locus_tag="5H198" /codon_start=1 /product="putative protein, with at least 4 transmembrane domains (5H198)" /protein_id="17566724" /db_xref="GI:17566724" /db_xref="AceView/WormGenes:5H198" /db_xref="LocusID:191189" // > 12861_NC_003283 protein_id:17564330; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H318"; intron(phase:0012000,position:23,64,111,162,253,289,340); exon(number:8,size:22,41,47,51,91,36,51,36,sum:375); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(6839326..6839436,6839482..6839634, 6839684..6839791,6839835..6840105,6840500..6840653, 6840710..6840851,6840899..6841021,6841080..6841145)) /gene="5H318" /locus_tag="5H318" /codon_start=1 /evidence=experimental /product="putative protein, with 3 coiled coil domains, of bilaterial origin (43.9 kD) (5H318)" /protein_id="17564330" /db_xref="GI:17564330" /db_xref="AceView/WormGenes:5H318" /db_xref="LocusID:179074" // > 12865_NC_003283 protein_id:17559002; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H331"; intron(phase:0011,position:65,161,258,269); exon(number:5,size:64,96,97,11,13,sum:281); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(6853139..6853330,6853381..6853668,6853718..6854009, 6854363..6854395,6854461..6854501) /gene="5H331" /locus_tag="5H331" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (5H331)" /protein_id="17559002" /db_xref="GI:17559002" /db_xref="AceView/WormGenes:5H331" /db_xref="LocusID:183854" // > 12889_NC_003283 protein_id:17558384; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H483"; intron(phase:200,position:69,213,300); exon(number:4,size:68,144,87,29,sum:328); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7006751..7006956,7007495..7007924,7007970..7008230, 7008278..7008367) /gene="5H483" /locus_tag="5H483" /codon_start=1 /evidence=experimental /product="putative endoplasmic reticulum protein family member, with at least 4 transmembrane domains (37.6 kD) (5H483)" /protein_id="17558384" /db_xref="GI:17558384" /db_xref="AceView/WormGenes:5H483" /db_xref="LocusID:183177" // > 12906_NC_003283 protein_id:25154123; Caenorhabditis elegans chromosome V, complete sequence. /gene="let-425"; intron(phase:10,position:98,169); exon(number:3,size:97,71,78,sum:246); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7061227..7061463,7061510..7061721, 7061916..7062207)) /gene="let-425" /locus_tag="5H538" /codon_start=1 /evidence=experimental /product="MeDiaTor, of RNA polymerase II transcriptional regulation, yeast Med6 homolog., LEThal LET-425 (28.9 kD) (let-425)" /protein_id="25154123" /db_xref="GI:25154123" /db_xref="AceView/WormGenes:let-425" /db_xref="LocusID:179091" // > 12909_NC_003283 protein_id:17566018; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H543"; intron(phase:0,position:41); exon(number:2,size:40,39,sum:79); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7065780..7065899,7066018..7066137) /gene="5H543" /locus_tag="5H543" /codon_start=1 /evidence=experimental /product="putative protein, with a transmembrane domain, of bilaterial origin (8.7 kD) (5H543)" /protein_id="17566018" /db_xref="GI:17566018" /db_xref="AceView/WormGenes:5H543" /db_xref="LocusID:179094" // > 12930_NC_003283 protein_id:32566922; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H634"; intron(phase:01100,position:55,106,200,241,273); exon(number:6,size:54,51,94,41,32,61,sum:333); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7157163..7157348,7157408..7157503, 7157549..7157670,7157788..7158069,7158118..7158271, 7158614..7158775)) /gene="5H634" /locus_tag="5H634" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein family member (5H634)" /protein_id="32566922" /db_xref="GI:32566922" /db_xref="AceView/WormGenes:5H634" /db_xref="LocusID:179101" // > 12933_NC_003283 protein_id:17563382; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-83"; intron(phase:111,position:59,112,283); exon(number:4,size:58,53,171,70,sum:352); {splice:gcag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7167109..7167283,7167324..7167482,7167726..7168238, 7168283..7168494) /gene="srh-83" /locus_tag="5H643" /codon_start=1 /product="serpentine Receptor, class H (srh-83)" /protein_id="17563382" /db_xref="GI:17563382" /db_xref="AceView/WormGenes:srh-83" /db_xref="LocusID:191875" // > 12950_NC_003283 protein_id:17557644; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H713"; intron(phase:022,position:53,208,312); exon(number:4,size:52,155,104,59,sum:370); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7233790..7233945,7234145..7234611,7234662..7234973, 7235032..7235209) /gene="5H713" /locus_tag="5H713" /codon_start=1 /evidence=experimental /product="rev protein (42.9 kD) (5H713)" /protein_id="17557644" /db_xref="GI:17557644" /db_xref="AceView/WormGenes:5H713" /db_xref="LocusID:179115" // > 12961_NC_003283 protein_id:17557846; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H751"; intron(phase:220202,position:100,143,179,217,288,335); exon(number:7,size:99,43,36,38,71,47,151,sum:485); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7278452..7278750,7279119..7279247,7279293..7279398, 7279440..7279555,7279597..7279807,7279852..7279994, 7280591..7281044) /gene="5H751" /locus_tag="5H751" /codon_start=1 /product="predicted CDS, putative protein family member (5H751)" /protein_id="17557846" /db_xref="GI:17557846" /db_xref="AceView/WormGenes:5H751" /db_xref="LocusID:182553" // > 12995_NC_003283 protein_id:17557550; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H853"; intron(phase:02100,position:14,67,141,199,258); exon(number:6,size:13,53,74,58,59,100,sum:357); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7377000..7377038,7377148..7377308,7377357..7377577, 7377625..7377797,7377844..7378020,7378067..7378369) /gene="5H853" /locus_tag="5H853" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 3 transmembrane domains (5H853)" /protein_id="17557550" /db_xref="GI:17557550" /db_xref="AceView/WormGenes:5H853" /db_xref="LocusID:182168" // > 13016_NC_003283 protein_id:17559848; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-71"; intron(phase:120,position:136,156,195); exon(number:4,size:135,20,39,139,sum:333); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7432320..7432739,7432912..7433026, 7433073..7433133,7433206..7433611)) /gene="srw-71" /locus_tag="5H912" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-71)" /protein_id="17559848" /db_xref="GI:17559848" /db_xref="AceView/WormGenes:srw-71" /db_xref="LocusID:184642" // > 13025_NC_003283 protein_id:17560156; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H931"; intron(phase:0,position:236); exon(number:2,size:235,142,sum:377); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7454320..7455024,7455070..7455498) /gene="5H931" /locus_tag="5H931" /codon_start=1 /product="putative protein family member (5H931)" /protein_id="17560156" /db_xref="GI:17560156" /db_xref="AceView/WormGenes:5H931" /db_xref="LocusID:184925" // > 13028_NC_003283 protein_id:17563390; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-92"; intron(phase:21,position:72,330); exon(number:3,size:71,258,19,sum:348); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7462284..7462342,7462385..7463157, 7463383..7463597)) /gene="srh-92" /locus_tag="5H938" /codon_start=1 /product="serpentine Receptor, class H (srh-92)" /protein_id="17563390" /db_xref="GI:17563390" /db_xref="AceView/WormGenes:srh-92" /db_xref="LocusID:191879" // > 13031_NC_003283 protein_id:17563508; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-28"; intron(phase:0100,position:64,93,186,253); exon(number:5,size:63,29,93,67,86,sum:338); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7474250..7474510,7474584..7474784, 7474828..7475105,7475195..7475282,7475326..7475514)) /gene="str-28" /locus_tag="5H952" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-28)" /protein_id="17563508" /db_xref="GI:17563508" /db_xref="AceView/WormGenes:str-28" /db_xref="LocusID:191971" // > 13035_NC_003283 protein_id:17558088; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H964"; intron(phase:00,position:38,72); exon(number:3,size:37,34,48,sum:119); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7485964..7486110,7486157..7486258, 7486301..7486411)) /gene="5H964" /locus_tag="5H964" /codon_start=1 /product="putative protein family member (5H964)" /protein_id="17558088" /db_xref="GI:17558088" /db_xref="AceView/WormGenes:5H964" /db_xref="LocusID:182772" // > 13043_NC_003283 protein_id:17558948; Caenorhabditis elegans chromosome V, complete sequence. /gene="5H989"; intron(phase:0001,position:21,139,174,258); exon(number:5,size:20,118,35,84,82,sum:339); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7510988..7511047,7511872..7512225,7512273..7512377, 7512460..7512712,7512954..7513201) /gene="5H989" /locus_tag="5H989" /codon_start=1 /product="nuclear receptor NHR-51 like family member (5H989)" /protein_id="17558948" /db_xref="GI:17558948" /db_xref="AceView/WormGenes:5H989" /db_xref="LocusID:183808" // > 13055_NC_003283 protein_id:17559878; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I32"; intron(phase:0100,position:40,84,131,159); exon(number:5,size:39,44,47,28,43,sum:201); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7555494..7555625,7555671..7555754, 7555801..7555940,7555987..7556119,7556433..7556549)) /gene="5I32" /locus_tag="5I32" /codon_start=1 /product="transthyretin-like family member (5I32)" /protein_id="17559878" /db_xref="GI:17559878" /db_xref="AceView/WormGenes:5I32" /db_xref="LocusID:184686" // > 13072_NC_003283 protein_id:17558764; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I85"; intron(phase:02,position:49,100); exon(number:3,size:48,51,29,sum:128); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7609238..7609381,7609423..7609577,7609625..7609712) /gene="5I85" /locus_tag="5I85" /codon_start=1 /product="predicted CDS, putative protein family member (5I85)" /protein_id="17558764" /db_xref="GI:17558764" /db_xref="AceView/WormGenes:5I85" /db_xref="LocusID:183655" // > 13089_NC_003283 protein_id:17559344; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-200"; intron(phase:10,position:110,174); exon(number:3,size:109,64,170,sum:343); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7654937..7655449,7655496..7655686, 7655939..7656266)) /gene="srh-200" /locus_tag="5I132" /codon_start=1 /product="serpentine Receptor, class H (srh-200)" /protein_id="17559344" /db_xref="GI:17559344" /db_xref="AceView/WormGenes:srh-200" /db_xref="LocusID:184135" // > 13099_NC_003283 protein_id:17566780; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I181"; intron(phase:01202220101222,position:43,81,141,168,203,258,365,413,438,466,590,647,687,731); exon(number:15,size:42,38,60,27,35,55,107,48,25,28,124,57,40,44,41,sum:771); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7699807..7699932,7699976..7700090,7700140..7700320, 7700482..7700560,7700736..7700842,7700888..7701052, 7701096..7701416,7701616..7701757,7701818..7701893, 7701935..7702017,7702090..7702462,7702516..7702687, 7702890..7703009,7703057..7703188,7703236..7703359) /gene="5I181" /locus_tag="5I181" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member, with a coiled coil-4 domain, of ancient origin (5I181)" /protein_id="17566780" /db_xref="GI:17566780" /db_xref="AceView/WormGenes:5I181" /db_xref="LocusID:191222" // > 13108_NC_003283 protein_id:25154397; Caenorhabditis elegans chromosome V, complete sequence. /gene="srr-9"; intron(phase:1022,position:14,71,164,270); exon(number:5,size:13,57,93,106,119,sum:388); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7740609..7740648,7740700..7740869,7740920..7741200, 7741447..7741764,7741838..7742195) /gene="srr-9" /locus_tag="5I217" /codon_start=1 /product="predicted CDS, serpentine Receptor, class R (srr-9)" /protein_id="25154397" /db_xref="GI:25154397" /db_xref="AceView/WormGenes:srr-9" /db_xref="LocusID:188110" // > 13125_NC_003283 protein_id:17562592; Caenorhabditis elegans chromosome V, complete sequence. /gene="lbp-4"; intron(phase:20,position:53,88); exon(number:3,size:52,35,58,sum:145); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7823186..7823343,7823600..7823702,7823754..7823930) /gene="lbp-4" /locus_tag="5I301" /codon_start=1 /evidence=experimental /product="lipid Binding Protein LBP-4, fatty acid-binding protein homolog 3 like (17.2 kD) (lbp-4)" /protein_id="17562592" /db_xref="GI:17562592" /db_xref="AceView/WormGenes:lbp-4" /db_xref="LocusID:179161" // > 13135_NC_003283 protein_id:17558468; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I339"; intron(phase:21222,position:103,151,187,224,273); exon(number:6,size:102,48,36,37,49,198,sum:470); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(7860562..7860869,7860917..7861059,7861213..7861321, 7861371..7861481,7861532..7861678,7861727..7862321) /gene="5I339" /locus_tag="5I339" /codon_start=1 /evidence=experimental /product="putative nuclear protein family member, with a coiled coil-4 domain, of ancient origin (5I339)" /protein_id="17558468" /db_xref="GI:17558468" /db_xref="AceView/WormGenes:5I339" /db_xref="LocusID:179166" // > 13156_NC_003283 protein_id:17560230; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I428"; intron(phase:110,position:92,156,194); exon(number:4,size:91,64,38,70,sum:263); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(7954223..7954435,7954477..7954589, 7954634..7954825,7955280..7955553)) /gene="5I428" /locus_tag="5I428" /codon_start=1 /product="predicted CDS, putative protein (5I428)" /protein_id="17560230" /db_xref="GI:17560230" /db_xref="AceView/WormGenes:5I428" /db_xref="LocusID:184976" // > 13193_NC_003283 protein_id:17563574; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-131"; intron(phase:1200,position:92,118,211,254); exon(number:5,size:91,26,93,43,82,sum:335); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(8082965..8083213,8083259..8083387, 8083435..8083711,8083759..8083837,8084003..8084276)) /gene="str-131" /locus_tag="5I560" /codon_start=1 /product="seven TM Receptor (str-131)" /protein_id="17563574" /db_xref="GI:17563574" /db_xref="AceView/WormGenes:str-131" /db_xref="LocusID:192006" // > 13223_NC_003283 protein_id:17562338; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I687"; intron(phase:101,position:39,68,102); exon(number:4,size:38,29,34,53,sum:154); {splice:gtag,gtag,gcag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(8209834..8209948,8210018..8210103,8210150..8210252, 8210351..8210511) /gene="5I687" /locus_tag="5I687" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (17.3 kD) (5I687)" /protein_id="17562338" /db_xref="GI:17562338" /db_xref="AceView/WormGenes:5I687" /db_xref="LocusID:179199" // > 13241_NC_003283 protein_id:17560028; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I746"; intron(phase:0110,position:64,92,107,259); exon(number:5,size:63,28,15,152,92,sum:350); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(8268401..8268679,8268903..8269357, 8269412..8269456,8269538..8269622,8269780..8269968)) /gene="5I746" /locus_tag="5I746" /codon_start=1 /product="predicted CDS, aspartic protease family member (5I746)" /protein_id="17560028" /db_xref="GI:17560028" /db_xref="AceView/WormGenes:5I746" /db_xref="LocusID:184789" // > 13247_NC_003283 protein_id:17563578; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-135"; intron(phase:012001,position:68,97,123,216,259,318); exon(number:7,size:67,29,26,93,43,59,28,sum:345); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(8281972..8282057,8282108..8282285, 8282333..8282461,8282512..8282788,8282845..8282923, 8282971..8283058,8283216..8283416)) /gene="str-135" /locus_tag="5I760" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-135)" /protein_id="17563578" /db_xref="GI:17563578" /db_xref="AceView/WormGenes:str-135" /db_xref="LocusID:192008" // > 13266_NC_003283 protein_id:17560714; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I841"; intron(phase:220220,position:37,100,111,146,195,226); exon(number:7,size:36,63,11,35,49,31,71,sum:296); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(8362415..8362524,8362589..8362777,8363158..8363188, 8363239..8363345,8363446..8363592,8363641..8363731, 8363776..8363991) /gene="5I841" /locus_tag="5I841" /codon_start=1 /product="predicted CDS, putative protein, with at least 6 transmembrane domains (5I841)" /protein_id="17560714" /db_xref="GI:17560714" /db_xref="AceView/WormGenes:5I841" /db_xref="LocusID:185464" // > 13281_NC_003283 protein_id:17564590; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I926"; intron(phase:0111,position:30,68,109,177); exon(number:5,size:29,38,41,68,48,sum:224); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(8449292..8449437,8449792..8449995, 8450087..8450209,8450256..8450370,8450413..8450499)) /gene="5I926" /locus_tag="5I926" /codon_start=1 /product="FGF receptor activating protein 1 like (5I926)" /protein_id="17564590" /db_xref="GI:17564590" /db_xref="AceView/WormGenes:5I926" /db_xref="LocusID:188777" // > 13282_NC_003283 protein_id:17564592; Caenorhabditis elegans chromosome V, complete sequence. /gene="5I938"; intron(phase:2011120,position:87,186,293,400,457,540,636); exon(number:8,size:86,99,107,107,57,83,96,35,sum:670); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(8460346..8460453,8460573..8460858, 8460905..8461154,8461434..8461604,8461652..8461972, 8462029..8462350,8462401..8462695,8462752..8463011)) /gene="5I938" /locus_tag="5I938" /codon_start=1 /evidence=experimental /product="k+ channel tetramerisation containing protein (74.3 kD) (5I938)" /protein_id="17564592" /db_xref="GI:17564592" /db_xref="AceView/WormGenes:5I938" /db_xref="LocusID:179226" // > 13368_NC_003283 protein_id:17559292; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J311"; intron(phase:2,position:189); exon(number:2,size:188,160,sum:348); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(8838205..8838770,8838824..8839304) /gene="5J311" /locus_tag="5J311" /codon_start=1 /product="putative protein family member (5J311)" /protein_id="17559292" /db_xref="GI:17559292" /db_xref="AceView/WormGenes:5J311" /db_xref="LocusID:184115" // > 13372_NC_003283 protein_id:17559304; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J344"; intron(phase:00,position:47,186); exon(number:3,size:46,139,17,sum:202); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(8866554..8866607,8866649..8867065, 8867109..8867246)) /gene="5J344" /locus_tag="5J344" /codon_start=1 /product="predicted CDS, putative protein family member (5J344)" /protein_id="17559304" /db_xref="GI:17559304" /db_xref="AceView/WormGenes:5J344" /db_xref="LocusID:184119" // > 13384_NC_003283 protein_id:17562244; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J397"; intron(phase:011,position:19,40,79); exon(number:4,size:18,21,39,107,sum:185); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(8917509..8917562,8918071..8918134,8918872..8918988, 8919067..8919389) /gene="5J397" /locus_tag="5J397" /codon_start=1 /product="predicted CDS, putative nuclear protein (5J397)" /protein_id="17562244" /db_xref="GI:17562244" /db_xref="AceView/WormGenes:5J397" /db_xref="LocusID:187064" // > 13408_NC_003283 protein_id:17562858; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J487"; intron(phase:02020,position:74,154,199,229,288); exon(number:6,size:73,80,45,30,59,48,sum:335); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9012070..9012288,9012331..9012572,9012618..9012750, 9012798..9012889,9012980..9013154,9013207..9013353) /gene="5J487" /locus_tag="5J487" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 2 transmembrane domains (5J487)" /protein_id="17562858" /db_xref="GI:17562858" /db_xref="AceView/WormGenes:5J487" /db_xref="LocusID:187548" // > 13425_NC_003283 protein_id:17558232; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J534"; intron(phase:21,position:10,27); exon(number:3,size:9,17,82,sum:108); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9060243..9060490,9060801..9060850, 9060898..9060926)) /gene="5J534" /locus_tag="5J534" /codon_start=1 /product="putative protein (5J534)" /protein_id="17558232" /db_xref="GI:17558232" /db_xref="AceView/WormGenes:5J534" /db_xref="LocusID:182895" // > 13439_NC_003283 protein_id:17559998; Caenorhabditis elegans chromosome V, complete sequence. /gene="pqn-31"; intron(phase:100,position:20,220,250); exon(number:4,size:19,200,30,133,sum:382); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9112215..9112272,9112353..9112951,9112998..9113087, 9113135..9113536) /gene="pqn-31" /locus_tag="5J591" /codon_start=1 /evidence=experimental /product="prion-like Q/N-rich domain protein PQN-31, Prion-like Q/N-rich domain protein (42.8 kD) (pqn-31)" /protein_id="17559998" /db_xref="GI:17559998" /db_xref="AceView/WormGenes:pqn-31" /db_xref="LocusID:179291" // > 13457_NC_003283 protein_id:17558152; Caenorhabditis elegans chromosome V, complete sequence. /gene="pqn-16"; intron(phase:00,position:19,250); exon(number:3,size:18,231,79,sum:328); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9176681..9176734,9176797..9177489,9177603..9177842) /gene="pqn-16" /locus_tag="5J655" /codon_start=1 /product="prion-like Q/N-rich domain protein PQN-16, Prion-like Q/N-rich domain protein (pqn-16)" /protein_id="17558152" /db_xref="GI:17558152" /db_xref="AceView/WormGenes:pqn-16" /db_xref="LocusID:182836" // > 13496_NC_003283 protein_id:17559198; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J834"; intron(phase:121,position:48,175,260); exon(number:4,size:47,127,85,54,sum:313); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9357316..9357479,9357909..9358162, 9358223..9358604,9358954..9359095)) /gene="5J834" /locus_tag="5J834" /codon_start=1 /evidence=experimental /product="transthyretin-like protein family member (5J834)" /protein_id="17559198" /db_xref="GI:17559198" /db_xref="AceView/WormGenes:5J834" /db_xref="LocusID:183986" // > 13502_NC_003283 protein_id:17559210; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J860"; intron(phase:0,position:73); exon(number:2,size:72,69,sum:141); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9382025..9382234,9382283..9382498)) /gene="5J860" /locus_tag="5J860" /codon_start=1 /product="putative cytoplasmic protein family member, with a coiled coil-4 domain (5J860)" /protein_id="17559210" /db_xref="GI:17559210" /db_xref="AceView/WormGenes:5J860" /db_xref="LocusID:183990" // > 13514_NC_003283 protein_id:17562210; Caenorhabditis elegans chromosome V, complete sequence. /gene="5J959"; intron(phase:02010,position:31,68,269,285,406); exon(number:6,size:30,37,201,16,121,106,sum:511); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9480803..9480892,9480948..9481060,9481164..9481764, 9481926..9481974,9485042..9485403,9485452..9485772) /gene="5J959" /locus_tag="5J959" /codon_start=1 /product="predicted CDS, astacin family member (5J959)" /protein_id="17562210" /db_xref="GI:17562210" /db_xref="AceView/WormGenes:5J959" /db_xref="LocusID:187045" // > 13539_NC_003283 protein_id:17560112; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K44"; intron(phase:200,position:20,158,274); exon(number:4,size:19,138,116,18,sum:291); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9568218..9568274,9568514..9568861, 9568910..9569321,9570446..9570504)) /gene="5K44" /locus_tag="5K44" /codon_start=1 /product="protein phosphatase family member (5K44)" /protein_id="17560112" /db_xref="GI:17560112" /db_xref="AceView/WormGenes:5K44" /db_xref="LocusID:184915" // > 13567_NC_003283 protein_id:17560790; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K188"; intron(phase:2020,position:23,43,74,105); exon(number:5,size:22,20,31,31,140,sum:244); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9710445..9710867,9711404..9711494, 9711546..9711640,9711693..9711750,9712327..9712394)) /gene="5K188" /locus_tag="5K188" /codon_start=1 /evidence=experimental /product="lifeguard (27.5 kD) (5K188)" /protein_id="17560790" /db_xref="GI:17560790" /db_xref="AceView/WormGenes:5K188" /db_xref="LocusID:179362" // > 13587_NC_003283 protein_id:17561038; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K258"; intron(phase:2200,position:21,78,316,361); exon(number:5,size:20,57,238,45,108,sum:468); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9780473..9780799,9780848..9780982, 9781070..9781781,9781828..9781998,9782044..9782105)) /gene="5K258" /locus_tag="5K258" /codon_start=1 /evidence=experimental /product="GTP-binding protein like (5K258)" /protein_id="17561038" /db_xref="GI:17561038" /db_xref="AceView/WormGenes:5K258" /db_xref="LocusID:179372" // > 13596_NC_003283 protein_id:17558750; Caenorhabditis elegans chromosome V, complete sequence. /gene="sru-29"; intron(phase:000,position:75,145,268); exon(number:4,size:74,70,123,71,sum:338); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9814050..9814271,9814321..9814530,9814577..9814945, 9814993..9815208) /gene="sru-29" /locus_tag="5K291" /codon_start=1 /product="predicted CDS, serpentine Receptor, class U (sru-29)" /protein_id="17558750" /db_xref="GI:17558750" /db_xref="AceView/WormGenes:sru-29" /db_xref="LocusID:183645" // > 13612_NC_003283 protein_id:17564260; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K359"; intron(phase:2,position:202); exon(number:2,size:201,87,sum:288); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9882703..9883307,9883406..9883667) /gene="5K359" /locus_tag="5K359" /codon_start=1 /product="putative endoplasmic reticulum protein family member, with a transmembrane domain (5K359)" /protein_id="17564260" /db_xref="GI:17564260" /db_xref="AceView/WormGenes:5K359" /db_xref="LocusID:188407" // > 13619_NC_003283 protein_id:17558812; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K399"; intron(phase:200,position:17,47,114); exon(number:4,size:16,30,67,160,sum:273); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(9919564..9919613,9919661..9919748,9919801..9920001, 9920052..9920534) /gene="5K399" /locus_tag="5K399" /codon_start=1 /product="putative nuclear protein (5K399)" /protein_id="17558812" /db_xref="GI:17558812" /db_xref="AceView/WormGenes:5K399" /db_xref="LocusID:183688" // > 13630_NC_003283 protein_id:17564050; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K438"; intron(phase:0000,position:9,105,159,185); exon(number:5,size:8,96,54,26,99,sum:283); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(9959721..9960020,9960069..9960146, 9960244..9960405,9960484..9960771,9960866..9960889)) /gene="5K438" /locus_tag="5K438" /codon_start=1 /evidence=experimental /product="phenylethanolamine N-methyltransferase (5K438)" /protein_id="17564050" /db_xref="GI:17564050" /db_xref="AceView/WormGenes:5K438" /db_xref="LocusID:179385" // > 13645_NC_003283 protein_id:17564034; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K514"; intron(phase:20,position:27,50); exon(number:3,size:26,23,55,sum:104); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10038297..10038464,10038521..10038587, 10038923..10039002)) /gene="5K514" /locus_tag="5K514" /codon_start=1 /product="predicted CDS, putative protein (5K514)" /protein_id="17564034" /db_xref="GI:17564034" /db_xref="AceView/WormGenes:5K514" /db_xref="LocusID:188193" // > 13646_NC_003283 protein_id:17561516; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K529"; intron(phase:112,position:18,75,109); exon(number:4,size:17,57,34,197,sum:305); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10046413..10046464,10046884..10047054, 10048205..10048307,10049782..10050373) /gene="5K529" /locus_tag="5K529" /codon_start=1 /evidence=experimental /product="putative nuclear protein (34.4 kD) (5K529)" /protein_id="17561516" /db_xref="GI:17561516" /db_xref="AceView/WormGenes:5K529" /db_xref="LocusID:179399" // > 13647_NC_003283 protein_id:25150296; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K530"; intron(phase:210202,position:41,85,118,251,283,326); exon(number:7,size:40,44,33,133,32,43,24,sum:349); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10053236..10053308,10054029..10054159, 10054210..10054303,10056519..10056919,10057043..10057140, 10057185..10057315,10057375..10057496)) /gene="5K530" /locus_tag="5K530" /codon_start=1 /evidence=experimental /product="yip1 interacting factor homolog (39.1 kD) (5K530)" /protein_id="25150296" /db_xref="GI:25150296" /db_xref="AceView/WormGenes:5K530" /db_xref="LocusID:179400" // > 13651_NC_003283 protein_id:17561526; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K552"; intron(phase:1221112,position:22,68,176,193,239,289,352); exon(number:8,size:21,46,108,17,46,50,63,34,sum:385); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10074533..10074635,10074702..10074891, 10074936..10075085,10075341..10075478,10075528..10075577, 10075653..10075976,10076237..10076375,10076418..10076481)) /gene="5K552" /locus_tag="5K552" /codon_start=1 /evidence=experimental /product="putative protein family member (5K552)" /protein_id="17561526" /db_xref="GI:17561526" /db_xref="AceView/WormGenes:5K552" /db_xref="LocusID:179401" // > 13678_NC_003283 protein_id:17558850; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K629"; intron(phase:21221,position:38,73,114,154,200); exon(number:6,size:37,35,41,40,46,68,sum:267); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10155171..10155283,10155326..10155429, 10155711..10155834,10155879..10155998,10156045..10156181, 10156227..10156432) /gene="5K629" /locus_tag="5K629" /codon_start=1 /product="putative protein family member, with at least 5 transmembrane domains (5K629)" /protein_id="17558850" /db_xref="GI:17558850" /db_xref="AceView/WormGenes:5K629" /db_xref="LocusID:183705" // > 13680_NC_003283 protein_id:17558854; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K633"; intron(phase:202,position:16,46,84); exon(number:4,size:15,30,38,43,sum:126); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10160627..10160673,10160902..10160989, 10161418..10161533,10161579..10161708) /gene="5K633" /locus_tag="5K633" /codon_start=1 /product="predicted CDS, putative protein family member (5K633)" /protein_id="17558854" /db_xref="GI:17558854" /db_xref="AceView/WormGenes:5K633" /db_xref="LocusID:183707" // > 13712_NC_003283 protein_id:17557220; Caenorhabditis elegans chromosome V, complete sequence. /gene="col-150"; intron(phase:0,position:40); exon(number:2,size:39,258,sum:297); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10296222..10296998,10297078..10297194)) /gene="col-150" /locus_tag="5K774" /codon_start=1 /product="COLlagen structural gene (col-150)" /protein_id="17557220" /db_xref="GI:17557220" /db_xref="AceView/WormGenes:col-150" /db_xref="LocusID:181814" // > 13754_NC_003283 protein_id:25152823; Caenorhabditis elegans chromosome V, complete sequence. /gene="egl-9"; intron(phase:001000211,position:26,69,228,293,334,362,393,642,663); exon(number:10,size:25,43,159,65,41,28,31,249,21,61,sum:723); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10471115..10471189,10471534..10471662, 10472990..10473467,10473513..10473706,10476270..10476392, 10476523..10476606,10476683..10476777,10477402..10478147, 10478232..10478294,10478869..10479053) /gene="egl-9" /locus_tag="5K955" /codon_start=1 /evidence=experimental /product="EGg Laying defective EGL-9, protein similar to rat SM-20 (79.7 kD) (egl-9)" /protein_id="25152823" /db_xref="GI:25152823" /db_xref="AceView/WormGenes:egl-9" /db_xref="LocusID:179461" // > 13756_NC_003283 protein_id:17565370; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K962"; intron(phase:201121212,position:27,149,268,297,349,474,530,585,680); exon(number:10,size:26,122,119,29,52,125,56,55,95,79,sum:758); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10483804..10484041,10484097..10484382, 10484478..10484641,10484748..10484916,10484964..10485337, 10485384..10485540,10485711..10485797,10485843..10486200, 10486261..10486624,10487186..10487265)) /gene="5K962" /locus_tag="5K962" /codon_start=1 /evidence=experimental /product="solute carrier family 21 member (5K962)" /protein_id="17565370" /db_xref="GI:17565370" /db_xref="AceView/WormGenes:5K962" /db_xref="LocusID:179463" // > 13762_NC_003283 protein_id:17558418; Caenorhabditis elegans chromosome V, complete sequence. /gene="5K987"; intron(phase:21002020,position:22,111,129,253,398,433,694,743); exon(number:9,size:21,89,18,124,145,35,261,49,43,sum:785); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10507101..10507165,10507212..10507477, 10507575..10507627,10507683..10508054,10508463..10508899, 10508944..10509046,10509123..10509907,10510093..10510237, 10510288..10510419) /gene="5K987" /locus_tag="5K987" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 2 transmembrane domains (5K987)" /protein_id="17558418" /db_xref="GI:17558418" /db_xref="AceView/WormGenes:5K987" /db_xref="LocusID:183223" // > 13780_NC_003283 protein_id:17564516; Caenorhabditis elegans chromosome V, complete sequence. /gene="5L56"; intron(phase:11022,position:22,58,102,194,237); exon(number:6,size:21,36,44,92,43,33,sum:269); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10579553..10579652,10579942..10580070, 10580116..10580393,10580444..10580574,10580620..10580727, 10580848..10580911)) /gene="5L56" /locus_tag="5L56" /codon_start=1 /evidence=experimental /product="synaptojanin 2 binding protein like (5L56)" /protein_id="17564516" /db_xref="GI:17564516" /db_xref="AceView/WormGenes:5L56" /db_xref="LocusID:179475" // > 13803_NC_003283 protein_id:17564862; Caenorhabditis elegans chromosome V, complete sequence. /gene="5L194"; intron(phase:221,position:32,477,539); exon(number:4,size:31,445,62,35,sum:573); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(10715724..10715830,10715916..10716100, 10716153..10717487,10717698..10717792)) /gene="5L194" /locus_tag="5L194" /codon_start=1 /evidence=experimental /product="cyclin-like F-box (65.3 kD) (5L194)" /protein_id="17564862" /db_xref="GI:17564862" /db_xref="AceView/WormGenes:5L194" /db_xref="LocusID:179487" // > 13805_NC_003283 protein_id:17566626; Caenorhabditis elegans chromosome V, complete sequence. /gene="5L219"; intron(phase:0020,position:45,251,404,441); exon(number:5,size:44,206,153,37,61,sum:501); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10739711..10739842,10739885..10740502, 10740546..10741006,10741062..10741170,10741519..10741704) /gene="5L219" /locus_tag="5L219" /codon_start=1 /evidence=experimental /product="WD repeat domain 5B (54.5 kD) (5L219)" /protein_id="17566626" /db_xref="GI:17566626" /db_xref="AceView/WormGenes:5L219" /db_xref="LocusID:179489" // > 13823_NC_003283 protein_id:17559104; Caenorhabditis elegans chromosome V, complete sequence. /gene="5L265"; intron(phase:100,position:13,91,156); exon(number:4,size:12,78,65,123,sum:278); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(10786917..10786953,10787009..10787241, 10787301..10787495,10787545..10787916) /gene="5L265" /locus_tag="5L265" /codon_start=1 /evidence=experimental /product="short-chain reductase family member (5L265)" /protein_id="17559104" /db_xref="GI:17559104" /db_xref="AceView/WormGenes:5L265" /db_xref="LocusID:183917" // > 13904_NC_003283 protein_id:32567210; Caenorhabditis elegans chromosome V, complete sequence. /gene="srg-40"; intron(phase:1000,position:83,126,172,276); exon(number:5,size:82,43,46,104,29,sum:304); {splice:gcag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(11165802..11165891,11165945..11166256, 11166335..11166472,11166526..11166653,11166925..11167171)) /gene="srg-40" /locus_tag="5L640" /codon_start=1 /product="predicted CDS, serpentine Receptor, class G (gamma) (srg-40)" /protein_id="32567210" /db_xref="GI:32567210" /db_xref="AceView/WormGenes:srg-40" /db_xref="LocusID:188593" // > 13913_NC_003283 protein_id:17564390; Caenorhabditis elegans chromosome V, complete sequence. /gene="5L700"; intron(phase:22121200,position:130,198,227,257,324,479,533,606); exon(number:9,size:129,68,29,30,67,155,54,73,141,sum:746); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(11225572..11225997,11226049..11226267, 11226410..11226569,11226614..11227079,11227122..11227321, 11227365..11227455,11227504..11227589,11227645..11227848, 11228498..11228886)) /gene="5L700" /locus_tag="5L700" /codon_start=1 /evidence=experimental /product="beta-galactosidase (5L700)" /protein_id="17564390" /db_xref="GI:17564390" /db_xref="AceView/WormGenes:5L700" /db_xref="LocusID:188583" // > 13917_NC_003283 protein_id:17564400; Caenorhabditis elegans chromosome V, complete sequence. /gene="ima-1"; intron(phase:1202,position:20,119,426,483); exon(number:5,size:19,99,307,57,42,sum:524); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11242302..11242359,11242404..11242701, 11242751..11243669,11243715..11243887,11243939..11244065) /gene="ima-1" /locus_tag="5L721" /codon_start=1 /evidence=experimental /product="IMportin Alpha, member of the NLS receptor protein family (59.9 kD) (ima-1)" /protein_id="17564400" /db_xref="GI:17564400" /db_xref="AceView/WormGenes:ima-1" /db_xref="LocusID:179555" // > 13953_NC_003283 protein_id:17562124; Caenorhabditis elegans chromosome V, complete sequence. /gene="5L875"; intron(phase:11002,position:44,101,163,298,350); exon(number:6,size:43,57,62,135,52,61,sum:410); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11398407..11398536,11398782..11398952, 11399010..11399194,11399593..11399997,11400089..11400246, 11400294..11400477) /gene="5L875" /locus_tag="5L875" /codon_start=1 /product="predicted CDS, metalloprotease III family member (5L875)" /protein_id="17562124" /db_xref="GI:17562124" /db_xref="AceView/WormGenes:5L875" /db_xref="LocusID:186924" // > 14005_NC_003283 protein_id:17560520; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M95"; intron(phase:1,position:45); exon(number:2,size:44,175,sum:219); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11615906..11616038,11616716..11617242) /gene="5M95" /locus_tag="5M95" /codon_start=1 /evidence=experimental /product="alpha 3 type vi collagen ; alpha-3 polypeptide family member (24.4 kD) (5M95)" /protein_id="17560520" /db_xref="GI:17560520" /db_xref="AceView/WormGenes:5M95" /db_xref="LocusID:179593" // > 14026_NC_003283 protein_id:17563828; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M241"; intron(phase:21000101,position:29,111,321,342,375,466,505,538); exon(number:9,size:28,82,210,21,33,91,39,33,25,sum:562); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11761544..11761629,11761678..11761922, 11762340..11762968,11763011..11763073,11763525..11763623, 11763672..11763945,11763989..11764104,11764148..11764247, 11764415..11764491) /gene="5M241" /locus_tag="5M241" /codon_start=1 /product="predicted CDS, protein tyrosine phosphatase (5M241)" /protein_id="17563828" /db_xref="GI:17563828" /db_xref="AceView/WormGenes:5M241" /db_xref="LocusID:188063" // > 14028_NC_003283 protein_id:17561404; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M244"; intron(phase:022,position:34,59,146); exon(number:4,size:33,25,87,41,sum:186); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(11766127..11766250,11766363..11766623, 11766669..11766745,11766877..11766975)) /gene="5M244" /locus_tag="5M244" /codon_start=1 /evidence=experimental /product="stem cell derived neuronal survival protein like (5M244)" /protein_id="17561404" /db_xref="GI:17561404" /db_xref="AceView/WormGenes:5M244" /db_xref="LocusID:179610" // > 14030_NC_003283 protein_id:17561408; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M249"; intron(phase:01210,position:77,221,275,338,425); exon(number:6,size:76,144,54,63,87,186,sum:610); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11769941..11770168,11770214..11770646, 11770950..11771112,11771158..11771345,11771398..11771657, 11771704..11772264) /gene="5M249" /locus_tag="5M249" /codon_start=1 /evidence=experimental /product="RING zinc finger containing protein (66.8 kD) (5M249)" /protein_id="17561408" /db_xref="GI:17561408" /db_xref="AceView/WormGenes:5M249" /db_xref="LocusID:179612" // > 14036_NC_003283 protein_id:17559144; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M279"; intron(phase:0100,position:4,88,120,180); exon(number:5,size:3,84,32,60,55,sum:234); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11797420..11797428,11797521..11797773, 11797820..11797914,11802442..11802621,11802679..11802846) /gene="5M279" /locus_tag="5M279" /codon_start=1 /evidence=experimental /product="cytochrome b5 (5M279)" /protein_id="17559144" /db_xref="GI:17559144" /db_xref="AceView/WormGenes:5M279" /db_xref="LocusID:179615" // > 14043_NC_003283 protein_id:17563192; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M312"; intron(phase:0121022011221,position:43,70,109,173,236,281,572,633,725,857,1068,1103,1146); exon(number:14,size:42,27,39,64,63,45,291,61,92,132,211,35,43,51,sum:1196); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(11835001..11835155,11838554..11838681, 11840623..11840727,11840773..11841406,11841586..11841981, 11842908..11843184,11843227..11843407,11843606..11844478, 11844540..11844676,11844846..11845033,11845083..11845273, 11845323..11845440,11845793..11845874,11846096..11846221)) /gene="5M312" /locus_tag="5M312" /codon_start=1 /evidence=experimental /product="nephrocystin 4 (5M312)" /protein_id="17563192" /db_xref="GI:17563192" /db_xref="AceView/WormGenes:5M312" /db_xref="LocusID:179620" // > 14048_NC_003283 protein_id:17563204; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M344"; intron(phase:02,position:141,205); exon(number:3,size:140,64,67,sum:271); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(11869779..11869980,11870026..11870219, 11870411..11870830)) /gene="5M344" /locus_tag="5M344" /codon_start=1 /product="putative protein, with at least 3 transmembrane domains (5M344)" /protein_id="17563204" /db_xref="GI:17563204" /db_xref="AceView/WormGenes:5M344" /db_xref="LocusID:187874" // > 14051_NC_003283 protein_id:17562582; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M369"; intron(phase:00,position:95,278); exon(number:3,size:94,183,72,sum:349); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11890892..11891173,11891217..11891765, 11891815..11892033) /gene="5M369" /locus_tag="5M369" /codon_start=1 /evidence=experimental /product="alcohol dehydrogenase (37.6 kD) (5M369)" /protein_id="17562582" /db_xref="GI:17562582" /db_xref="AceView/WormGenes:5M369" /db_xref="LocusID:179627" // > 14064_NC_003283 protein_id:32566081; Caenorhabditis elegans chromosome V, complete sequence. /gene="cpr-1"; intron(phase:01,position:2,223); exon(number:3,size:1,221,107,sum:329); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(11978176..11978178,11978261..11978924, 11978971..11979293) /gene="cpr-1" /locus_tag="5M457" /codon_start=1 /evidence=experimental /product="cysteine PRotease related (35.4 kD) (cpr-1)" /protein_id="32566081" /db_xref="GI:32566081" /db_xref="AceView/WormGenes:cpr-1" /db_xref="LocusID:179637" // > 14093_NC_003283 protein_id:17562950; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M573"; intron(phase:001021,position:14,57,93,144,207,325); exon(number:7,size:13,43,36,51,63,118,86,sum:410); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(12094660..12094698,12094900..12095028, 12095078..12095186,12095232..12095383,12095427..12095617, 12095660..12096012,12096059..12096318) /gene="5M573" /locus_tag="5M573" /codon_start=1 /product="ecdysone receptor family member (5M573)" /protein_id="17562950" /db_xref="GI:17562950" /db_xref="AceView/WormGenes:5M573" /db_xref="LocusID:187660" // > 14110_NC_003283 protein_id:17564942; Caenorhabditis elegans chromosome V, complete sequence. /gene="5M645"; intron(phase:0002,position:4,134,270,298); exon(number:5,size:3,130,136,28,60,sum:357); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(12167808..12167816,12167928..12168317, 12168475..12168882,12168936..12169021,12169078..12169258) /gene="5M645" /locus_tag="5M645" /codon_start=1 /product="predicted CDS, 7TM chemoreceptor, subfamily 1 (5M645)" /protein_id="17564942" /db_xref="GI:17564942" /db_xref="AceView/WormGenes:5M645" /db_xref="LocusID:189067" // > 14206_NC_003283 protein_id:17557960; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N72"; intron(phase:02121001,position:19,45,90,147,190,228,251,283); exon(number:9,size:18,26,45,57,43,38,23,32,59,sum:341); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(12593627..12593805,12593848..12593944, 12594011..12594079,12594126..12594238,12594294..12594421, 12594475..12594646,12594694..12594827,12594876..12594955, 12595005..12595058)) /gene="5N72" /locus_tag="5N72" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (5N72)" /protein_id="17557960" /db_xref="GI:17557960" /db_xref="AceView/WormGenes:5N72" /db_xref="LocusID:179723" // > 14211_NC_003283 protein_id:32567226; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N91"; intron(phase:2,position:3); exon(number:2,size:2,176,sum:178); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(12612730..12612737,12612808..12613336) /gene="5N91" /locus_tag="5N91" /codon_start=1 /evidence=experimental /product="putative protein (20.4 kD) (5N91)" /protein_id="32567226" /db_xref="GI:32567226" /db_xref="AceView/WormGenes:5N91" /db_xref="LocusID:259343" // > 14228_NC_003283 protein_id:17563104; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N189"; intron(phase:22,position:71,264); exon(number:3,size:70,193,72,sum:335); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(12711974..12712185,12712457..12713035, 12713082..12713298) /gene="5N189" /locus_tag="5N189" /codon_start=1 /product="putative cytoplasmic protein (5N189)" /protein_id="17563104" /db_xref="GI:17563104" /db_xref="AceView/WormGenes:5N189" /db_xref="LocusID:187803" // > 14277_NC_003283 protein_id:17564060; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N348"; intron(phase:000201,position:21,111,128,173,283,337); exon(number:7,size:20,90,17,45,110,54,56,sum:392); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(12870893..12871062,12871458..12871620, 12871704..12872031,12872079..12872215,12872261..12872311, 12872364..12872633,12872693..12872752)) /gene="5N348" /locus_tag="5N348" /codon_start=1 /evidence=experimental /product="RNA binding protein like (5N348)" /protein_id="17564060" /db_xref="GI:17564060" /db_xref="AceView/WormGenes:5N348" /db_xref="LocusID:179765" // > 14280_NC_003283 protein_id:17563208; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N372"; intron(phase:001022201100,position:23,51,73,145,286,336,385,461,534,571,608,704); exon(number:13,size:22,28,22,72,141,50,49,76,73,37,37,96,73,sum:776); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(12894376..12894597,12895247..12895534, 12895589..12895698,12895748..12895858,12895906..12896125, 12896232..12896457,12896509..12896655,12896708..12896857, 12897074..12897498,12897659..12897873,12898071..12898137, 12898263..12898346,12898395..12898460)) /gene="5N372" /locus_tag="5N372" /codon_start=1 /evidence=experimental /product="tau-tubulin kinase (87.2 kD) (5N372)" /protein_id="17563208" /db_xref="GI:17563208" /db_xref="AceView/WormGenes:5N372" /db_xref="LocusID:179768" // > 14303_NC_003283 protein_id:17563264; Caenorhabditis elegans chromosome V, complete sequence. /gene="shw-3"; intron(phase:22000001,position:30,65,86,129,236,371,410,446); exon(number:9,size:29,35,21,43,107,135,39,36,39,sum:484); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(12975999..12976117,12976162..12976270, 12976329..12976445,12977094..12977498,12977548..12977868, 12978402..12978530,12978577..12978637,12978684..12978788, 12978841..12978929)) /gene="shw-3" /locus_tag="5N454" /codon_start=1 /product="SHaW family of potassium channels (shw-3)" /protein_id="17563264" /db_xref="GI:17563264" /db_xref="AceView/WormGenes:shw-3" /db_xref="LocusID:191761" // > 14309_NC_003283 protein_id:17559708; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N488"; intron(phase:0022011,position:47,64,125,162,284,391,446); exon(number:8,size:46,17,61,37,122,107,55,55,sum:500); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13009720..13009886,13009931..13010095, 13010148..13010469,13010998..13011361,13011414..13011524, 13012941..13013125,13013991..13014041,13014095..13014232)) /gene="5N488" /locus_tag="5N488" /codon_start=1 /evidence=experimental /product="putative protein, with a transmembrane domain (5N488)" /protein_id="17559708" /db_xref="GI:17559708" /db_xref="AceView/WormGenes:5N488" /db_xref="LocusID:179787" // > 14313_NC_003283 protein_id:17565168; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N516"; intron(phase:2100211010,position:73,82,136,175,210,244,304,336,365,407); exon(number:11,size:72,9,54,39,35,34,60,32,29,42,28,sum:434); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13036866..13036952,13037004..13037128, 13037505..13037592,13037638..13037732,13037777..13037956, 13038009..13038109,13038155..13038261,13038302..13038418, 13038463..13038623,13038666..13038691,13039081..13039298)) /gene="5N516" /locus_tag="5N516" /codon_start=1 /product="glycosyl transferase, family 11 (5N516)" /protein_id="17565168" /db_xref="GI:17565168" /db_xref="AceView/WormGenes:5N516" /db_xref="LocusID:189284" // > 14314_NC_003283 protein_id:17565170; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N518"; intron(phase:000121011,position:41,82,123,217,353,577,640,728,778); exon(number:10,size:40,41,41,94,136,224,63,88,50,43,sum:820); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13041355..13041485,13041540..13041689, 13041796..13042060,13042108..13042295,13042344..13043014, 13043067..13043475,13043525..13043807,13043857..13043979, 13044025..13044147,13044201..13044320)) /gene="5N518" /locus_tag="5N518" /codon_start=1 /evidence=experimental /product="kinase-like protein (5N518)" /protein_id="17565170" /db_xref="GI:17565170" /db_xref="AceView/WormGenes:5N518" /db_xref="LocusID:179789" // > 14395_NC_003283 protein_id:17564218; Caenorhabditis elegans chromosome V, complete sequence. /gene="5N956"; intron(phase:2100,position:55,115,149,267); exon(number:5,size:54,60,34,118,80,sum:346); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13479983..13480225,13480969..13481322, 13481366..13481466,13481516..13481694,13482249..13482412)) /gene="5N956" /locus_tag="5N956" /codon_start=1 /product="putative protein, with at least 6 transmembrane domains (5N956)" /protein_id="17564218" /db_xref="GI:17564218" /db_xref="AceView/WormGenes:5N956" /db_xref="LocusID:188389" // > 14425_NC_003283 protein_id:17561330; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O104"; intron(phase:22,position:223,363); exon(number:3,size:222,140,181,sum:543); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13624906..13625449,13625984..13626403, 13626454..13627121)) /gene="5O104" /locus_tag="5O104" /codon_start=1 /evidence=experimental /product="cellular senescence inhibited gene protein like (59.9 kD) (5O104)" /protein_id="17561330" /db_xref="GI:17561330" /db_xref="AceView/WormGenes:5O104" /db_xref="LocusID:179849" // > 14465_NC_003283 protein_id:17561280; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O286"; intron(phase:00010,position:92,161,197,242,362); exon(number:6,size:91,69,36,45,120,27,sum:388); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13807355..13807438,13808120..13808478, 13808534..13808669,13808719..13808826,13808871..13809077, 13809536..13809808)) /gene="5O286" /locus_tag="5O286" /codon_start=1 /evidence=experimental /product="WD-repeat protein (42.9 kD) (5O286)" /protein_id="17561280" /db_xref="GI:17561280" /db_xref="AceView/WormGenes:5O286" /db_xref="LocusID:179876" // > 14495_NC_003283 protein_id:17557668; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O389"; intron(phase:100,position:51,168,207); exon(number:4,size:50,117,39,108,sum:314); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(13909094..13909244,13909686..13910035, 13910082..13910198,13910247..13910573) /gene="5O389" /locus_tag="5O389" /codon_start=1 /product="hydroxysteroid dehydrogenase 12 family member (5O389)" /protein_id="17557668" /db_xref="GI:17557668" /db_xref="AceView/WormGenes:5O389" /db_xref="LocusID:182291" // > 14500_NC_003283 protein_id:17557678; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-250"; intron(phase:01220,position:61,90,116,161,208); exon(number:6,size:60,29,26,45,47,134,sum:341); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(13921238..13921417,13921471..13921558, 13921620..13921698,13921749..13921883,13921937..13922075, 13922225..13922629) /gene="str-250" /locus_tag="5O399" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-250)" /protein_id="17557678" /db_xref="GI:17557678" /db_xref="AceView/WormGenes:str-250" /db_xref="LocusID:182295" // > 14505_NC_003283 protein_id:17563060; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O426"; intron(phase:020,position:49,129,173); exon(number:4,size:48,80,44,97,sum:269); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(13947975..13948268,13948409..13948538, 13948588..13948829,13948876..13949019)) /gene="5O426" /locus_tag="5O426" /codon_start=1 /product="predicted CDS, putative endoplasmic reticulum protein family member, with at least 5 transmembrane domains (5O426)" /protein_id="17563060" /db_xref="GI:17563060" /db_xref="AceView/WormGenes:5O426" /db_xref="LocusID:187761" // > 14545_NC_003283 protein_id:17557194; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O629"; intron(phase:02100,position:39,67,109,285,386); exon(number:6,size:38,28,42,176,101,181,sum:566); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(14149245..14149358,14149507..14149592, 14149642..14149766,14149815..14150341,14150484..14150786, 14150835..14151380) /gene="5O629" /locus_tag="5O629" /codon_start=1 /evidence=experimental /product="ligase family member (5O629)" /protein_id="17557194" /db_xref="GI:17557194" /db_xref="AceView/WormGenes:5O629" /db_xref="LocusID:179913" // > 14581_NC_003283 protein_id:17560832; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O767"; intron(phase:0,position:101); exon(number:2,size:100,281,sum:381); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(14288799..14289098,14289579..14290424) /gene="5O767" /locus_tag="5O767" /codon_start=1 /evidence=experimental /product="putative nuclear protein (42.5 kD) (5O767)" /protein_id="17560832" /db_xref="GI:17560832" /db_xref="AceView/WormGenes:5O767" /db_xref="LocusID:179928" // > 14582_NC_003283 protein_id:17559622; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O768"; intron(phase:0,position:50); exon(number:2,size:49,49,sum:98); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(14291535..14291684,14291735..14291881)) /gene="5O768" /locus_tag="5O768" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (5O768)" /protein_id="17559622" /db_xref="GI:17559622" /db_xref="AceView/WormGenes:5O768" /db_xref="LocusID:184462" // > 14609_NC_003283 protein_id:17558008; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O899"; intron(phase:0002001,position:54,157,255,292,332,380,437); exon(number:8,size:53,103,98,37,40,48,57,67,sum:503); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(14420692..14420850,14420989..14421297, 14421345..14421638,14421687..14421799,14421846..14421963, 14422010..14422153,14422200..14422371,14422418..14422620) /gene="5O899" /locus_tag="5O899" /codon_start=1 /evidence=experimental /product="putative protein (58.5 kD) (5O899)" /protein_id="17558008" /db_xref="GI:17558008" /db_xref="AceView/WormGenes:5O899" /db_xref="LocusID:179939" // > 14623_NC_003283 protein_id:17559394; Caenorhabditis elegans chromosome V, complete sequence. /gene="5O942"; intron(phase:0,position:44); exon(number:2,size:43,104,sum:147); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(14464641..14464955,14465237..14465365)) /gene="5O942" /locus_tag="5O942" /codon_start=1 /product="heat shock protein family member (5O942)" /protein_id="17559394" /db_xref="GI:17559394" /db_xref="AceView/WormGenes:5O942" /db_xref="LocusID:184214" // > 14667_NC_003283 protein_id:17558688; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P187"; intron(phase:2102222222222222200,position:82,109,302,417,472,507,616,651,1162,1200,1268,1302,1344,1384,1425,1463,1532,1586,1657); exon(number:20,size:81,27,193,115,55,35,109,35,511,38,68,34,42,40,41,38,69,54,71,19,sum:1675); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(14699616..14699860,14701327..14701406, 14701556..14702133,14702706..14703052,14703293..14703457, 14703503..14703607,14703912..14704238,14704433..14704537, 14704745..14706277,14706327..14706440,14706578..14706781, 14707177..14707278,14707393..14707518,14707590..14707709, 14707973..14708095,14708415..14708528,14708711..14708917, 14709202..14709361,14709592..14709804,14710003..14710062) /gene="5P187" /locus_tag="5P187" /codon_start=1 /evidence=experimental /product="mll5 family member (5P187)" /protein_id="17558688" /db_xref="GI:17558688" /db_xref="AceView/WormGenes:5P187" /db_xref="LocusID:179973" // > 14668_NC_003283 protein_id:17562966; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P195"; intron(phase:001,position:80,117,150); exon(number:4,size:79,37,33,141,sum:290); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(14715228..14715464,14715572..14715682, 14715856..14715955,14716145..14716569) /gene="5P195" /locus_tag="5P195" /codon_start=1 /product="putative protein (5P195)" /protein_id="17562966" /db_xref="GI:17562966" /db_xref="AceView/WormGenes:5P195" /db_xref="LocusID:187694" // > 14678_NC_003283 protein_id:17565934; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P241"; intron(phase:011,position:274,447,526); exon(number:4,size:273,173,79,291,sum:816); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(14765077..14765895,14766063..14766582, 14766638..14766874,14767552..14768426) /gene="5P241" /locus_tag="5P241" /codon_start=1 /product="predicted CDS, RNA-directed DNA polymerase family member (5P241)" /protein_id="17565934" /db_xref="GI:17565934" /db_xref="AceView/WormGenes:5P241" /db_xref="LocusID:190113" // > 14716_NC_003283 protein_id:17563674; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P483"; intron(phase:1012020120,position:13,36,51,75,132,290,332,367,410,501); exon(number:11,size:12,23,15,24,57,158,42,35,43,91,41,sum:541); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15005307..15005343,15005393..15005460, 15005503..15005548,15005596..15005668,15005716..15005884, 15005927..15006402,15006451..15006574,15006620..15006725, 15006770..15006899,15006953..15007223,15007278..15007403) /gene="5P483" /locus_tag="5P483" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil domain (62.2 kD) (5P483)" /protein_id="17563674" /db_xref="GI:17563674" /db_xref="AceView/WormGenes:5P483" /db_xref="LocusID:180000" // > 14726_NC_003283 protein_id:17558194; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P518"; intron(phase:000,position:29,129,213); exon(number:4,size:28,100,84,74,sum:286); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15040389..15040613,15040675..15040926, 15040976..15041275,15041346..15041429)) /gene="5P518" /locus_tag="5P518" /codon_start=1 /evidence=experimental /product="MSP-domain protein like family member (5P518)" /protein_id="17558194" /db_xref="GI:17558194" /db_xref="AceView/WormGenes:5P518" /db_xref="LocusID:180008" // > 14749_NC_003283 protein_id:17563712; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P598"; intron(phase:120220,position:55,94,176,212,285,321); exon(number:7,size:54,39,82,36,73,36,29,sum:349); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15119502..15119591,15119636..15119741, 15120011..15120229,15120279..15120388,15120435..15120678, 15120722..15120839,15121093..15121255)) /gene="5P598" /locus_tag="5P598" /codon_start=1 /evidence=experimental /product="tyrosine kinase 4 family member (5P598)" /protein_id="17563712" /db_xref="GI:17563712" /db_xref="AceView/WormGenes:5P598" /db_xref="LocusID:180021" // > 14759_NC_003283 protein_id:17564154; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P631"; intron(phase:211,position:13,68,109); exon(number:4,size:12,55,41,74,sum:182); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15153555..15153592,15153637..15153800, 15153843..15153965,15154009..15154232) /gene="5P631" /locus_tag="5P631" /codon_start=1 /product="predicted CDS, putative protein (5P631)" /protein_id="17564154" /db_xref="GI:17564154" /db_xref="AceView/WormGenes:5P631" /db_xref="LocusID:188342" // > 14763_NC_003283 protein_id:17564156; Caenorhabditis elegans chromosome V, complete sequence. /gene="str-45"; intron(phase:202,position:164,187,311); exon(number:4,size:163,23,124,34,sum:344); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15161585..15162075,15162124..15162190, 15162343..15162716,15162794..15162896) /gene="str-45" /locus_tag="5P641" /codon_start=1 /product="predicted CDS, seven TM Receptor (str-45)" /protein_id="17564156" /db_xref="GI:17564156" /db_xref="AceView/WormGenes:str-45" /db_xref="LocusID:188343" // > 14781_NC_003283 protein_id:17558570; Caenorhabditis elegans chromosome V, complete sequence. /gene="sri-25"; intron(phase:000012,position:54,97,170,248,274,314); exon(number:7,size:53,43,73,78,26,40,10,sum:323); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15220166..15220324,15220375..15220503, 15220904..15221122,15221181..15221414,15221586..15221664, 15221715..15221835,15221884..15221914) /gene="sri-25" /locus_tag="5P697" /codon_start=1 /product="serpentine Receptor, class I (sri-25)" /protein_id="17558570" /db_xref="GI:17558570" /db_xref="AceView/WormGenes:sri-25" /db_xref="LocusID:183386" // > 14782_NC_003283 protein_id:17558568; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P699"; intron(phase:1201,position:114,125,169,240); exon(number:5,size:113,11,44,71,58,sum:297); {splice:gtag,gtag,gtag,gcag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15222540..15222879,15223008..15223041, 15223097..15223226,15223508..15223721,15223796..15223971) /gene="5P699" /locus_tag="5P699" /codon_start=1 /product="7TM chemoreceptor, subfamily 2 (5P699)" /protein_id="17558568" /db_xref="GI:17558568" /db_xref="AceView/WormGenes:5P699" /db_xref="LocusID:183385" // > 14792_NC_003283 protein_id:17562610; Caenorhabditis elegans chromosome V, complete sequence. /gene="kin-30"; intron(phase:2120220,position:66,171,216,311,347,426,463); exon(number:8,size:65,105,45,95,36,79,37,21,sum:483); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15247357..15247553,15247773..15248086, 15248142..15248277,15248321..15248603,15249113..15249222, 15249267..15249503,15249868..15249976,15250016..15250081) /gene="kin-30" /locus_tag="5P727" /codon_start=1 /evidence=experimental /product="tyrosine kinase receptor family member (kin-30)" /protein_id="17562610" /db_xref="GI:17562610" /db_xref="AceView/WormGenes:kin-30" /db_xref="LocusID:180032" // > 14814_NC_003283 protein_id:17566964; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P796"; intron(phase:0001,position:58,200,249,292); exon(number:5,size:57,142,49,43,43,sum:334); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15317262..15317392,15317435..15317564, 15317609..15317755,15317806..15318231,15318351..15318521)) /gene="5P796" /locus_tag="5P796" /codon_start=1 /product="putative protein family member (5P796)" /protein_id="17566964" /db_xref="GI:17566964" /db_xref="AceView/WormGenes:5P796" /db_xref="LocusID:191498" // > 14844_NC_003283 protein_id:17564010; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P878"; intron(phase:2222102,position:36,255,312,330,405,476,519); exon(number:8,size:35,219,57,18,75,71,43,45,sum:563); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15399979..15400114,15400156..15400286, 15400652..15400863,15400914..15401137,15401240..15401293, 15401340..15401510,15401555..15402211,15402279..15402385)) /gene="5P878" /locus_tag="5P878" /codon_start=1 /product="cyclin-like F-box and Protein of unknown function DUF38 family member (5P878)" /protein_id="17564010" /db_xref="GI:17564010" /db_xref="AceView/WormGenes:5P878" /db_xref="LocusID:188182" // > 14847_NC_003283 protein_id:17564018; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-258"; intron(phase:100,position:100,162,249); exon(number:4,size:99,62,87,96,sum:344); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15407753..15408050,15408099..15408283, 15408752..15409012,15409064..15409354) /gene="srh-258" /locus_tag="5P885" /codon_start=1 /product="serpentine Receptor, class H (srh-258)" /protein_id="17564018" /db_xref="GI:17564018" /db_xref="AceView/WormGenes:srh-258" /db_xref="LocusID:188186" // > 14855_NC_003283 protein_id:17565394; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P902"; intron(phase:220,position:46,74,290); exon(number:4,size:45,28,216,65,sum:354); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15426465..15426662,15426869..15427514, 15427687..15427770,15427876..15428012)) /gene="5P902" /locus_tag="5P902" /codon_start=1 /product="cyclin-like F-box and Protein of unknown function DUF38 family member (5P902)" /protein_id="17565394" /db_xref="GI:17565394" /db_xref="AceView/WormGenes:5P902" /db_xref="LocusID:189597" // > 14856_NC_003283 protein_id:17564762; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P904"; intron(phase:1010021110,position:7,33,55,110,149,187,222,263,333,364); exon(number:11,size:6,26,22,55,39,38,35,41,70,31,29,sum:392); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15429899..15429988,15430037..15430128, 15430173..15430382,15430430..15430552,15434023..15434126, 15434174..15434289,15434333..15434449,15434598..15434761, 15434814..15434880,15434994..15435070,15435142..15435160)) /gene="5P904" /locus_tag="5P904" /codon_start=1 /product="predicted CDS, putative protein family member (5P904)" /protein_id="17564762" /db_xref="GI:17564762" /db_xref="AceView/WormGenes:5P904" /db_xref="LocusID:188959" // > 14864_NC_003283 protein_id:17564628; Caenorhabditis elegans chromosome V, complete sequence. /gene="5P940"; intron(phase:0100122101,position:50,201,506,610,909,944,1025,1079,1169,1225); exon(number:11,size:49,151,305,104,299,35,81,54,90,56,38,sum:1262); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15462097..15462212,15462301..15462469, 15462514..15462782,15462830..15462990,15463040..15463282, 15463327..15463432,15463477..15464374,15464436..15464747, 15464798..15465711,15465758..15466211,15466867..15467013)) /gene="5P940" /locus_tag="5P940" /codon_start=1 /evidence=experimental /product="SP460 like family member (136.8 kD) (5P940)" /protein_id="17564628" /db_xref="GI:17564628" /db_xref="AceView/WormGenes:5P940" /db_xref="LocusID:180041" // > 14865_NC_003283 protein_id:17564630; Caenorhabditis elegans chromosome V, complete sequence. /gene="pqn-71"; intron(phase:0,position:17); exon(number:2,size:16,314,sum:330); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15468294..15468341,15468687..15469631) /gene="pqn-71" /locus_tag="5P947" /codon_start=1 /evidence=experimental /product="prion-like Q/N-rich domain protein PQN-71, Prion-like Q/N-rich domain protein (pqn-71)" /protein_id="17564630" /db_xref="GI:17564630" /db_xref="AceView/WormGenes:pqn-71" /db_xref="LocusID:188802" // > 14876_NC_003283 protein_id:17559972; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-276"; intron(phase:10,position:109,246); exon(number:3,size:108,137,87,sum:332); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15531961..15532285,15532548..15532957, 15533095..15533358) /gene="srh-276" /locus_tag="5Q5" /codon_start=1 /product="serpentine Receptor, class H (srh-276)" /protein_id="17559972" /db_xref="GI:17559972" /db_xref="AceView/WormGenes:srh-276" /db_xref="LocusID:184747" // > 14881_NC_003283 protein_id:17557186; Caenorhabditis elegans chromosome V, complete sequence. /gene="acr-18"; intron(phase:020221001,position:8,116,163,204,238,318,369,408,484); exon(number:10,size:7,108,47,41,34,80,51,39,76,58,sum:541); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15553831..15554006,15554130..15554358, 15555041..15555157,15555445..15555596,15555646..15555884, 15555933..15556034,15556084..15556208,15556301..15556439, 15556719..15557044,15557249..15557269)) /gene="acr-18" /locus_tag="5Q30" /codon_start=1 /evidence=experimental /product="acetylcholine receptor (acr-18)" /protein_id="17557186" /db_xref="GI:17557186" /db_xref="AceView/WormGenes:acr-18" /db_xref="LocusID:191604" // > 14899_NC_003283 protein_id:17558982; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-168"; intron(phase:0001,position:103,142,178,216); exon(number:5,size:102,39,36,38,59,sum:274); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15642270..15642575,15642701..15642817, 15644581..15644688,15644754..15644868,15644913..15645091) /gene="srh-168" /locus_tag="5Q115" /codon_start=1 /product="serpentine Receptor, class H (srh-168)" /protein_id="17558982" /db_xref="GI:17558982" /db_xref="AceView/WormGenes:srh-168" /db_xref="LocusID:183831" // > 14944_NC_003283 protein_id:17564714; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q273"; intron(phase:0102,position:62,136,158,275); exon(number:5,size:61,74,22,117,71,sum:345); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15796445..15796627,15796669..15796891, 15797054..15797118,15797161..15797513,15797573..15797786) /gene="5Q273" /locus_tag="5Q273" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (5Q273)" /protein_id="17564714" /db_xref="GI:17564714" /db_xref="AceView/WormGenes:5Q273" /db_xref="LocusID:188933" // > 14950_NC_003283 protein_id:17564726; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q285"; intron(phase:2,position:206); exon(number:2,size:205,79,sum:284); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15807435..15808051,15808105..15808342) /gene="5Q285" /locus_tag="5Q285" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 5 transmembrane domains (5Q285)" /protein_id="17564726" /db_xref="GI:17564726" /db_xref="AceView/WormGenes:5Q285" /db_xref="LocusID:188939" // > 14961_NC_003283 protein_id:17561372; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q305"; intron(phase:10,position:59,212); exon(number:3,size:58,153,75,sum:286); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15829002..15829176,15829280..15829737, 15829794..15830021) /gene="5Q305" /locus_tag="5Q305" /codon_start=1 /product="putative protein family member, with at least 5 transmembrane domains (5Q305)" /protein_id="17561372" /db_xref="GI:17561372" /db_xref="AceView/WormGenes:5Q305" /db_xref="LocusID:186206" // > 14963_NC_003283 protein_id:17561378; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q308"; intron(phase:0010,position:146,196,270,418); exon(number:5,size:145,50,74,148,91,sum:508); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(15831614..15831889,15831937..15832379, 15832425..15832647,15833250..15833399,15833615..15834049)) /gene="5Q308" /locus_tag="5Q308" /codon_start=1 /product="putative protein family member, with at least 9 transmembrane domains (5Q308)" /protein_id="17561378" /db_xref="GI:17561378" /db_xref="AceView/WormGenes:5Q308" /db_xref="LocusID:186209" // > 15000_NC_003283 protein_id:17563918; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-53"; intron(phase:222,position:95,143,296); exon(number:4,size:94,48,153,46,sum:341); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(15946016..15946299,15946354..15946497, 15946803..15947261,15947307..15947445) /gene="srw-53" /locus_tag="5Q425" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-53)" /protein_id="17563918" /db_xref="GI:17563918" /db_xref="AceView/WormGenes:srw-53" /db_xref="LocusID:188147" // > 15032_NC_003283 protein_id:17564208; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q508"; intron(phase:2202,position:51,94,200,313); exon(number:5,size:50,43,106,113,62,sum:374); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16030092..16030278,16030415..16030755, 16031128..16031443,16031587..16031715,16031778..16031929)) /gene="5Q508" /locus_tag="5Q508" /codon_start=1 /product="cyclin-like F-box family member (5Q508)" /protein_id="17564208" /db_xref="GI:17564208" /db_xref="AceView/WormGenes:5Q508" /db_xref="LocusID:188377" // > 15041_NC_003283 protein_id:17559680; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q538"; intron(phase:000,position:33,54,201); exon(number:4,size:32,21,147,45,sum:245); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16060200..16060337,16060554..16060994, 16061042..16061104,16061375..16061470)) /gene="5Q538" /locus_tag="5Q538" /codon_start=1 /evidence=experimental /product="putative nuclear protein (28.4 kD) (5Q538)" /protein_id="17559680" /db_xref="GI:17559680" /db_xref="AceView/WormGenes:5Q538" /db_xref="LocusID:180077" // > 15046_NC_003283 protein_id:17559690; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q551"; intron(phase:20,position:28,119); exon(number:3,size:27,91,148,sum:266); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16074041..16074123,16074170..16074440, 16074489..16074935) /gene="5Q551" /locus_tag="5Q551" /codon_start=1 /product="nuclear receptor NHR-42 like family member (5Q551)" /protein_id="17559690" /db_xref="GI:17559690" /db_xref="AceView/WormGenes:5Q551" /db_xref="LocusID:184496" // > 15063_NC_003283 protein_id:17560986; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q618"; intron(phase:020,position:45,75,129); exon(number:4,size:44,30,54,33,sum:161); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16141437..16141538,16141586..16141745, 16141791..16141882,16142076..16142207)) /gene="5Q618" /locus_tag="5Q618" /codon_start=1 /product="putative protein family member, with at least 3 transmembrane domains (5Q618)" /protein_id="17560986" /db_xref="GI:17560986" /db_xref="AceView/WormGenes:5Q618" /db_xref="LocusID:185758" // > 15109_NC_003283 protein_id:17560322; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q760"; intron(phase:000002,position:26,50,80,174,234,324); exon(number:7,size:25,24,30,94,60,90,51,sum:374); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16283227..16283380,16283432..16283703, 16283928..16284107,16284172..16284453,16284519..16284608, 16284662..16284733,16284781..16284855)) /gene="5Q760" /locus_tag="5Q760" /codon_start=1 /product="putative protein family member (5Q760)" /protein_id="17560322" /db_xref="GI:17560322" /db_xref="AceView/WormGenes:5Q760" /db_xref="LocusID:185080" // > 15114_NC_003283 protein_id:17558334; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q775"; intron(phase:020,position:133,204,328); exon(number:4,size:132,71,124,78,sum:405); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16300198..16300593,16300651..16300865, 16301799..16302168,16302217..16302453) /gene="5Q775" /locus_tag="5Q775" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 6 transmembrane domains (5Q775)" /protein_id="17558334" /db_xref="GI:17558334" /db_xref="AceView/WormGenes:5Q775" /db_xref="LocusID:183071" // > 15132_NC_003283 protein_id:17565190; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q849"; intron(phase:2002201,position:48,81,109,151,181,254,381); exon(number:8,size:47,33,28,42,30,73,127,67,sum:447); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16371272..16371414,16372195..16372291, 16372450..16372533,16372586..16372713,16372998..16373087, 16373145..16373361,16373434..16373815,16374141..16374343) /gene="5Q849" /locus_tag="5Q849" /codon_start=1 /evidence=experimental /product="protein kinase beta (5Q849)" /protein_id="17565190" /db_xref="GI:17565190" /db_xref="AceView/WormGenes:5Q849" /db_xref="LocusID:189304" // > 15139_NC_003283 protein_id:17559608; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q869"; intron(phase:11,position:27,182); exon(number:3,size:26,155,85,sum:266); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16393606..16393684,16394176..16394640, 16394694..16394950) /gene="5Q869" /locus_tag="5Q869" /codon_start=1 /product="glutathione s-transferase family member (5Q869)" /protein_id="17559608" /db_xref="GI:17559608" /db_xref="AceView/WormGenes:5Q869" /db_xref="LocusID:184405" // > 15140_NC_003283 protein_id:17559596; Caenorhabditis elegans chromosome V, complete sequence. /gene="srd-63"; intron(phase:20001,position:65,98,126,219,245); exon(number:6,size:64,33,28,93,26,58,sum:302); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16395073..16395248,16395300..16395378, 16395524..16395802,16395904..16395987,16396045..16396141, 16396226..16396419)) /gene="srd-63" /locus_tag="5Q870" /codon_start=1 /product="serpentine Receptor, class D (delta) (srd-63)" /protein_id="17559596" /db_xref="GI:17559596" /db_xref="AceView/WormGenes:srd-63" /db_xref="LocusID:184399" // > 15143_NC_003283 protein_id:17560200; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q889"; intron(phase:10112010,position:39,91,194,281,320,357,402,439); exon(number:9,size:38,52,103,87,39,37,45,37,29,sum:467); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16410554..16410668,16410717..16410871, 16411340..16411649,16411696..16411956,16412003..16412120, 16412243..16412351,16412409..16412544,16412612..16412721, 16412772..16412861) /gene="5Q889" /locus_tag="5Q889" /codon_start=1 /evidence=experimental /product="glycosyl transferase, family 14 (5Q889)" /protein_id="17560200" /db_xref="GI:17560200" /db_xref="AceView/WormGenes:5Q889" /db_xref="LocusID:180103" // > 15153_NC_003283 protein_id:17560218; Caenorhabditis elegans chromosome V, complete sequence. /gene="5Q917"; intron(phase:0,position:37); exon(number:2,size:36,233,sum:269); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16438446..16438553,16438626..16439327) /gene="5Q917" /locus_tag="5Q917" /codon_start=1 /product="metridin-like ShK toxin family member (5Q917)" /protein_id="17560218" /db_xref="GI:17560218" /db_xref="AceView/WormGenes:5Q917" /db_xref="LocusID:184968" // > 15160_NC_003283 protein_id:17564096; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-142"; intron(phase:21,position:59,108); exon(number:3,size:58,49,222,sum:329); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16461979..16462646,16463180..16463325, 16463380..16463555)) /gene="srh-142" /locus_tag="5Q936" /codon_start=1 /product="serpentine Receptor, class H (srh-142)" /protein_id="17564096" /db_xref="GI:17564096" /db_xref="AceView/WormGenes:srh-142" /db_xref="LocusID:188294" // > 15239_NC_003283 protein_id:25148299; Caenorhabditis elegans chromosome V, complete sequence. /gene="5R277"; intron(phase:02111,position:40,374,444,478,576); exon(number:6,size:39,334,70,34,98,97,sum:672); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16797922..16798038,16798662..16799665, 16800626..16800834,16800884..16800985,16802452..16802745, 16804109..16804401) /gene="5R277" /locus_tag="5R277" /codon_start=1 /product="predicted CDS, CTP synthase (5R277)" /protein_id="25148299" /db_xref="GI:25148299" /db_xref="AceView/WormGenes:5R277" /db_xref="LocusID:189267" // > 15252_NC_003283 protein_id:17566362; Caenorhabditis elegans chromosome V, complete sequence. /gene="5R330"; intron(phase:00011,position:62,77,137,185,245); exon(number:6,size:61,15,60,48,60,124,sum:368); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(16853018..16853391,16853467..16853646, 16853716..16853860,16853901..16854080,16854213..16854257, 16854486..16854668)) /gene="5R330" /locus_tag="5R330" /codon_start=1 /product="c-type lectin family member (5R330)" /protein_id="17566362" /db_xref="GI:17566362" /db_xref="AceView/WormGenes:5R330" /db_xref="LocusID:190828" // > 15261_NC_003283 protein_id:17561200; Caenorhabditis elegans chromosome V, complete sequence. /gene="srw-23"; intron(phase:0012010,position:18,70,95,307,398,456,490); exon(number:8,size:17,52,25,212,91,58,34,40,sum:529); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16875339..16875389,16875434..16875589, 16876486..16876561,16876619..16877255,16877377..16877647, 16877825..16877999,16878463..16878563,16878610..16878732) /gene="srw-23" /locus_tag="5R351" /codon_start=1 /product="predicted CDS, serpentine Receptor, class W (srw-23)" /protein_id="17561200" /db_xref="GI:17561200" /db_xref="AceView/WormGenes:srw-23" /db_xref="LocusID:186008" // > 15279_NC_003283 protein_id:17566378; Caenorhabditis elegans chromosome V, complete sequence. /gene="5R419"; intron(phase:221,position:66,94,156); exon(number:4,size:65,28,62,18,sum:173); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(16943544..16943740,16943792..16943875, 16943922..16944106,16944495..16944550) /gene="5R419" /locus_tag="5R419" /codon_start=1 /product="predicted CDS, cyclin-like F-box family member (5R419)" /protein_id="17566378" /db_xref="GI:17566378" /db_xref="AceView/WormGenes:5R419" /db_xref="LocusID:190835" // > 15315_NC_003283 protein_id:17560298; Caenorhabditis elegans chromosome V, complete sequence. /gene="5R535"; intron(phase:000,position:96,222,326); exon(number:4,size:95,126,104,25,sum:350); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(17058017..17058301,17058346..17058723, 17059043..17059354,17059593..17059670) /gene="5R535" /locus_tag="5R535" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein family member (5R535)" /protein_id="17560298" /db_xref="GI:17560298" /db_xref="AceView/WormGenes:5R535" /db_xref="LocusID:185041" // > 15362_NC_003283 protein_id:17566180; Caenorhabditis elegans chromosome V, complete sequence. /gene="5R722"; intron(phase:02,position:31,72); exon(number:3,size:30,41,14,sum:85); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(17244293..17244335,17244392..17244516, 17244559..17244648)) /gene="5R722" /locus_tag="5R722" /codon_start=1 /product="putative protein (5R722)" /protein_id="17566180" /db_xref="GI:17566180" /db_xref="AceView/WormGenes:5R722" /db_xref="LocusID:190532" // > 15385_NC_003283 protein_id:17561152; Caenorhabditis elegans chromosome V, complete sequence. /gene="5R824"; intron(phase:22210,position:67,98,131,186,200); exon(number:6,size:66,31,33,55,14,63,sum:262); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(17345521..17345712,17345814..17345854, 17346265..17346428,17346474..17346572,17347150..17347242, 17347288..17347487)) /gene="5R824" /locus_tag="5R824" /codon_start=1 /product="cyclin-like F-box and Protein of unknown function DUF38 family member (5R824)" /protein_id="17561152" /db_xref="GI:17561152" /db_xref="AceView/WormGenes:5R824" /db_xref="LocusID:185954" // > 15428_NC_003283 protein_id:17562138; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-261"; intron(phase:100,position:100,163,240); exon(number:4,size:99,63,77,92,sum:331); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(17500003..17500300,17500349..17500536, 17501004..17501234,17501280..17501558) /gene="srh-261" /locus_tag="5R971" /codon_start=1 /product="serpentine Receptor, class H (srh-261)" /protein_id="17562138" /db_xref="GI:17562138" /db_xref="AceView/WormGenes:srh-261" /db_xref="LocusID:186944" // > 15466_NC_003283 protein_id:17561688; Caenorhabditis elegans chromosome V, complete sequence. /gene="5S159"; intron(phase:0,position:52); exon(number:2,size:51,48,sum:99); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(17687813..17687965,17688512..17688658) /gene="5S159" /locus_tag="5S159" /codon_start=1 /product="putative secreted or extracellular protein precursor (5S159)" /protein_id="17561688" /db_xref="GI:17561688" /db_xref="AceView/WormGenes:5S159" /db_xref="LocusID:186559" // > 15520_NC_003283 protein_id:17566080; Caenorhabditis elegans chromosome V, complete sequence. /gene="5S562"; intron(phase:20,position:21,236); exon(number:3,size:20,215,62,sum:297); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(18085040..18085228,18085274..18085916, 18085966..18086027)) /gene="5S562" /locus_tag="5S562" /codon_start=1 /evidence=experimental /product="cyclin-like F-box and Protein of unknown function DUF38 family member (5S562)" /protein_id="17566080" /db_xref="GI:17566080" /db_xref="AceView/WormGenes:5S562" /db_xref="LocusID:190394" // > 15580_NC_003283 protein_id:17565958; Caenorhabditis elegans chromosome V, complete sequence. /gene="5S847"; intron(phase:1,position:40); exon(number:2,size:39,59,sum:98); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(18375705..18375822,18375880..18376058) /gene="5S847" /locus_tag="5S847" /codon_start=1 /product="putative cytoplasmic protein family member of ancient origin (5S847)" /protein_id="17565958" /db_xref="GI:17565958" /db_xref="AceView/WormGenes:5S847" /db_xref="LocusID:190126" // > 15586_NC_003283 protein_id:17566842; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-209"; intron(phase:102,position:110,175,338); exon(number:4,size:109,65,163,40,sum:377); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(18406128..18406248,18406308..18406798, 18406866..18407059,18407115..18407442)) /gene="srh-209" /locus_tag="5S876" /codon_start=1 /product="serpentine Receptor, class H (srh-209)" /protein_id="17566842" /db_xref="GI:17566842" /db_xref="AceView/WormGenes:srh-209" /db_xref="LocusID:191273" // > 15587_NC_003283 protein_id:17566822; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-207"; intron(phase:10,position:110,179); exon(number:3,size:109,69,165,sum:343); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(18411625..18412122,18412238..18412443, 18412497..18412824)) /gene="srh-207" /locus_tag="5S880" /codon_start=1 /product="serpentine Receptor, class H (srh-207)" /protein_id="17566822" /db_xref="GI:17566822" /db_xref="AceView/WormGenes:srh-207" /db_xref="LocusID:191266" // > 15616_NC_003283 protein_id:17565992; Caenorhabditis elegans chromosome V, complete sequence. /gene="srg-34"; intron(phase:00020,position:52,131,177,212,291); exon(number:6,size:51,79,46,35,79,44,sum:334); {splice:gcag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(18564802..18564936,18565262..18565496, 18566600..18566706,18566763..18566900,18566989..18567225, 18567311..18567463)) /gene="srg-34" /locus_tag="5T42" /codon_start=1 /product="serpentine Receptor, class G (gamma) (srg-34)" /protein_id="17565992" /db_xref="GI:17565992" /db_xref="AceView/WormGenes:srg-34" /db_xref="LocusID:190136" // > 15627_NC_003283 protein_id:17566208; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T137"; intron(phase:0000,position:79,111,189,231); exon(number:5,size:78,32,78,42,40,sum:270); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(18657300..18657533,18657581..18657676, 18658169..18658402,18658455..18658580,18658625..18658747) /gene="5T137" /locus_tag="5T137" /codon_start=1 /product="sodium channel family member (5T137)" /protein_id="17566208" /db_xref="GI:17566208" /db_xref="AceView/WormGenes:5T137" /db_xref="LocusID:190562" // > 15634_NC_003283 protein_id:17565270; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T189"; intron(phase:2021,position:16,54,131,159); exon(number:5,size:15,38,77,28,83,sum:241); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(18710593..18710639,18710699..18710810, 18712261..18712493,18713800..18713882,18713976..18714226) /gene="5T189" /locus_tag="5T189" /codon_start=1 /product="predicted CDS, putative protein (5T189)" /protein_id="17565270" /db_xref="GI:17565270" /db_xref="AceView/WormGenes:5T189" /db_xref="LocusID:189451" // > 15641_NC_003283 protein_id:17559568; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T220"; intron(phase:010,position:91,185,213); exon(number:4,size:90,94,28,32,sum:244); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(18750525..18750623,18750676..18750758, 18750809..18751091,18751139..18751408)) /gene="5T220" /locus_tag="5T220" /codon_start=1 /product="predicted CDS, putative protein family member (5T220)" /protein_id="17559568" /db_xref="GI:17559568" /db_xref="AceView/WormGenes:5T220" /db_xref="LocusID:184354" // > 15672_NC_003283 protein_id:17566294; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T424"; intron(phase:112122,position:44,85,122,150,201,234); exon(number:7,size:43,41,37,28,51,33,46,sum:279); {splice:gtag,gcag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(18955727..18955865,18955962..18956060, 18956984..18957137,18957372..18957454,18958711..18958822, 18958869..18958991,18959758..18959887)) /gene="5T424" /locus_tag="5T424" /codon_start=1 /product="DNA segment Chr 16 expressed (5T424)" /protein_id="17566294" /db_xref="GI:17566294" /db_xref="AceView/WormGenes:5T424" /db_xref="LocusID:190742" // > 15683_NC_003283 protein_id:25151552; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T475"; intron(phase:22,position:33,115); exon(number:3,size:32,82,28,sum:142); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19003601..19003698,19003921..19004166, 19004285..19004369) /gene="5T475" /locus_tag="5T475" /codon_start=1 /evidence=experimental /product="putative protein of bilaterial origin (17.5 kD) (5T475)" /protein_id="25151552" /db_xref="GI:25151552" /db_xref="AceView/WormGenes:5T475" /db_xref="LocusID:180245" // > 15691_NC_003283 protein_id:25155269; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T509"; intron(phase:120,position:53,110,226); exon(number:4,size:52,57,116,40,sum:265); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19036508..19036664,19036710..19036881, 19037481..19037826,19037875..19037997) /gene="5T509" /locus_tag="5T509" /codon_start=1 /product="ET translation product like family member (5T509)" /protein_id="25155269" /db_xref="GI:25155269" /db_xref="AceView/WormGenes:5T509" /db_xref="LocusID:260228" // > 15694_NC_003283 protein_id:25154801; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T516"; intron(phase:0,position:270); exon(number:2,size:269,121,sum:390); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(19045796..19046161,19046628..19047434)) /gene="5T516" /locus_tag="5T516" /codon_start=1 /product="predicted CDS, aspartic protease precursor family member (5T516)" /protein_id="25154801" /db_xref="GI:25154801" /db_xref="AceView/WormGenes:5T516" /db_xref="LocusID:189740" // > 15696_NC_003283 protein_id:25151576; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T541"; intron(phase:21100,position:47,78,147,188,298); exon(number:6,size:46,31,69,41,110,22,sum:319); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19062771..19062910,19064361..19064452, 19065802..19066008,19066139..19066260,19068032..19068361, 19069420..19069488) /gene="5T541" /locus_tag="5T541" /codon_start=1 /evidence=experimental /product="potassium channel TWIK-1 (36.4 kD) (5T541)" /protein_id="25151576" /db_xref="GI:25151576" /db_xref="AceView/WormGenes:5T541" /db_xref="LocusID:180252" // > 15697_NC_003283 protein_id:25151580; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T546"; intron(phase:1222020,position:24,158,831,1061,1103,1181,1221); exon(number:8,size:23,134,673,230,42,78,40,132,sum:1352); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(19071202..19071600,19071743..19071860, 19071910..19072145,19072306..19072429,19072483..19073172, 19073321..19075339,19075385..19075787,19076598..19076667)) /gene="5T546" /locus_tag="5T546" /codon_start=1 /evidence=experimental /product="protein tyrosine phosphatase family member (5T546)" /protein_id="25151580" /db_xref="GI:25151580" /db_xref="AceView/WormGenes:5T546" /db_xref="LocusID:180253" // > 15705_NC_003283 protein_id:25154790; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T613"; intron(phase:10,position:106,175); exon(number:3,size:105,69,56,sum:230); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19139090..19139405,19140161..19140366, 19141397..19141567) /gene="5T613" /locus_tag="5T613" /codon_start=1 /product="putative protein (5T613)" /protein_id="25154790" /db_xref="GI:25154790" /db_xref="AceView/WormGenes:5T613" /db_xref="LocusID:189735" // > 15751_NC_003283 protein_id:17565644; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T860"; intron(phase:02010112,position:29,66,117,171,227,288,366,418); exon(number:9,size:28,37,51,54,56,61,78,52,58,sum:475); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(19387633..19387807,19388416..19388572, 19388812..19389045,19389114..19389297,19390267..19390433, 19390630..19390792,19391065..19391215,19392399..19392511, 19392618..19392701)) /gene="5T860" /locus_tag="5T860" /codon_start=1 /evidence=experimental /product="thymic stromal like, possibly N-myristoylated (53.3 kD) (5T860)" /protein_id="17565644" /db_xref="GI:17565644" /db_xref="AceView/WormGenes:5T860" /db_xref="LocusID:180270" // > 15761_NC_003283 protein_id:32566824; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T920"; intron(phase:12,position:216,597); exon(number:3,size:215,381,10,sum:606); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(19448672..19448702,19449215..19450358, 19450804..19451449)) /gene="5T920" /locus_tag="5T920" /codon_start=1 /evidence=experimental /product="putative nuclear protein family member, with a coiled coil-4 domain, of eukaryotic origin (5T920)" /protein_id="32566824" /db_xref="GI:32566824" /db_xref="AceView/WormGenes:5T920" /db_xref="LocusID:180274" // > 15768_NC_003283 protein_id:17565660; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T963"; intron(phase:21,position:99,120); exon(number:3,size:98,21,4,sum:123); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19493341..19493636,19493686..19493747, 19493798..19493811) /gene="5T963" /locus_tag="5T963" /codon_start=1 /product="predicted CDS, putative mitochondrial protein (5T963)" /protein_id="17565660" /db_xref="GI:17565660" /db_xref="AceView/WormGenes:5T963" /db_xref="LocusID:189872" // > 15769_NC_003283 protein_id:17565658; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T965"; intron(phase:00,position:18,38); exon(number:3,size:17,20,26,sum:63); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19494724..19494774,19494822..19494881, 19497157..19497237) /gene="5T965" /locus_tag="5T965" /codon_start=1 /product="predicted CDS, putative mitochondrial protein (5T965)" /protein_id="17565658" /db_xref="GI:17565658" /db_xref="AceView/WormGenes:5T965" /db_xref="LocusID:189871" // > 15771_NC_003283 protein_id:17565652; Caenorhabditis elegans chromosome V, complete sequence. /gene="5T993"; intron(phase:121111211121111111111120,position:65,92,128,229,367,422,486,523,571,628,857,942,1046,1102,1152,1210,1323,1369,1405,1458,1514,1664,1696,1710); exon(number:25,size:64,27,36,101,138,55,64,37,48,57,229,85,104,56,50,58,113,46,36,53,56,150,32,14,34,sum:1743); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gcag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19505692..19505884,19506334..19506415, 19506578..19506684,19506726..19507028,19507420..19507833, 19508475..19508639,19508951..19509143,19509866..19509975, 19510271..19510414,19510579..19510749,19511554..19512241, 19512607..19512860,19516522..19516833,19516935..19517102, 19517206..19517355,19517441..19517614,19517785..19518123, 19518344..19518481,19519381..19519488,19519650..19519808, 19519856..19520023,19520074..19520523,19520998..19521094, 19521148..19521187,19522202..19522306) /gene="5T993" /locus_tag="5T993" /codon_start=1 /evidence=experimental /product="papilin (5T993)" /protein_id="17565652" /db_xref="GI:17565652" /db_xref="AceView/WormGenes:5T993" /db_xref="LocusID:180277" // > 15786_NC_003283 protein_id:17565690; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U121"; intron(phase:0,position:41); exon(number:2,size:40,68,sum:108); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19648697..19648816,19649659..19649865) /gene="5U121" /locus_tag="5U121" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein precursor (11.7 kD) (5U121)" /protein_id="17565690" /db_xref="GI:17565690" /db_xref="AceView/WormGenes:5U121" /db_xref="LocusID:180288" // > 15817_NC_003283 protein_id:17566514; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U258"; intron(phase:11121212,position:29,42,58,102,172,218,280,323); exon(number:9,size:28,13,16,44,70,46,62,43,59,sum:381); {splice:gtag,gcag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(19796004..19796181,19796231..19796360, 19796406..19796590,19796640..19796778,19797042..19797250, 19797833..19797965,19798872..19798919,19798965..19799003, 19799054..19799138)) /gene="5U258" /locus_tag="5U258" /codon_start=1 /product="predicted CDS, putative endoplasmic reticulum protein (5U258)" /protein_id="17566514" /db_xref="GI:17566514" /db_xref="AceView/WormGenes:5U258" /db_xref="LocusID:191015" // > 15841_NC_003283 protein_id:17566108; Caenorhabditis elegans chromosome V, complete sequence. /gene="srh-172"; intron(phase:101,position:121,184,285); exon(number:4,size:120,63,101,63,sum:347); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(19957007..19957367,19958093..19958280, 19958386..19958689,19958731..19958921) /gene="srh-172" /locus_tag="5U429" /codon_start=1 /product="serpentine Receptor, class H (srh-172)" /protein_id="17566108" /db_xref="GI:17566108" /db_xref="AceView/WormGenes:srh-172" /db_xref="LocusID:190434" // > 15861_NC_003283 protein_id:17566456; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U613"; intron(phase:0,position:77); exon(number:2,size:76,31,sum:107); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(20146205..20146432,20146598..20146693) /gene="5U613" /locus_tag="5U613" /codon_start=1 /product="putative protein (5U613)" /protein_id="17566456" /db_xref="GI:17566456" /db_xref="AceView/WormGenes:5U613" /db_xref="LocusID:190961" // > 15878_NC_003283 protein_id:17566478; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U677"; intron(phase:210002,position:32,58,179,213,248,285); exon(number:7,size:31,26,121,34,35,37,47,sum:331); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(20204675..20204769,20204816..20204892, 20205011..20205372,20205417..20205518,20205566..20205670, 20205766..20205878,20206267..20206408) /gene="5U677" /locus_tag="5U677" /codon_start=1 /product="predicted CDS, putative protein family member, with at least 3 transmembrane domains (5U677)" /protein_id="17566478" /db_xref="GI:17566478" /db_xref="AceView/WormGenes:5U677" /db_xref="LocusID:190974" // > 15904_NC_003283 protein_id:17562080; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U851"; intron(phase:0,position:120); exon(number:2,size:119,4,sum:123); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(20378728..20379084,20379454..20379468) /gene="5U851" /locus_tag="5U851" /codon_start=1 /evidence=experimental /product="aspartic protease, retrovirus (5U851)" /protein_id="17562080" /db_xref="GI:17562080" /db_xref="AceView/WormGenes:5U851" /db_xref="LocusID:180335" // > 15908_NC_003283 protein_id:17561352; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U866"; intron(phase:01110002,position:49,134,196,255,324,434,548,617); exon(number:9,size:48,85,62,59,69,110,114,69,51,sum:667); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(20395167..20395320,20395368..20395576, 20396322..20396663,20397709..20398038,20402582..20402787, 20403820..20403996,20406226..20406411,20407196..20407451, 20408397..20408540)) /gene="5U866" /locus_tag="5U866" /codon_start=1 /evidence=experimental /product="putative protein (5U866)" /protein_id="17561352" /db_xref="GI:17561352" /db_xref="AceView/WormGenes:5U866" /db_xref="LocusID:180338" // > 15929_NC_003283 protein_id:17565468; Caenorhabditis elegans chromosome V, complete sequence. /gene="5U992"; intron(phase:102,position:21,194,239); exon(number:4,size:20,173,45,44,sum:282); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(20518439..20518571,20518690..20518826, 20518880..20519397,20519441..20519501)) /gene="5U992" /locus_tag="5U992" /codon_start=1 /product="putative cytoplasmic protein family member (5U992)" /protein_id="17565468" /db_xref="GI:17565468" /db_xref="AceView/WormGenes:5U992" /db_xref="LocusID:189690" // > 15948_NC_003283 protein_id:17560250; Caenorhabditis elegans chromosome V, complete sequence. /gene="5V59"; intron(phase:22012010001102,position:9,64,90,121,153,209,246,282,410,465,500,565,593,630); exon(number:15,size:8,55,26,31,32,56,37,36,128,55,35,65,28,37,83,sum:712); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(20579100..20579125,20579169..20579333, 20579431..20579506,20579609..20579702,20580139..20580235, 20580593..20580758,20580889..20581000,20581272..20581378, 20582733..20583116,20584689..20584853,20585738..20585843, 20586496..20586690,20587170..20587252,20587302..20587414, 20587883..20588132) /gene="5V59" /locus_tag="5V59" /codon_start=1 /evidence=experimental /product="eukaryotic membrane protein DUF747 (80.7 kD) (5V59)" /protein_id="17560250" /db_xref="GI:17560250" /db_xref="AceView/WormGenes:5V59" /db_xref="LocusID:180347" // > 15960_NC_003283 protein_id:17561032; Caenorhabditis elegans chromosome V, complete sequence. /gene="5V100"; intron(phase:1,position:29); exon(number:2,size:28,31,sum:59); {splice:gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(20631531..20631625,20631670..20631754)) /gene="5V100" /locus_tag="5V100" /codon_start=1 /product="predicted CDS, putative protein (5V100)" /protein_id="17561032" /db_xref="GI:17561032" /db_xref="AceView/WormGenes:5V100" /db_xref="LocusID:185837" // > 15982_NC_003283 protein_id:17559254; Caenorhabditis elegans chromosome V, complete sequence. /gene="elp-1"; intron(phase:101221120000010,position:28,57,90,205,232,265,287,337,450,497,538,626,731,819,852); exon(number:16,size:27,29,33,115,27,33,22,50,113,47,41,88,105,88,33,40,sum:891); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(20763068..20763190,20763595..20763692, 20763741..20764005,20764054..20764368,20764417..20764680, 20764739..20764861,20764907..20765047,20765095..20765431, 20765483..20765633,20765685..20765750,20765799..20765896, 20765957..20766037,20766409..20766754,20766808..20766907, 20766958..20767043,20768110..20768191)) /gene="elp-1" /locus_tag="5V236" /codon_start=1 /evidence=experimental /product="EMAP Echinoderm microtubule associated-Like Protein (98.3 kD) (elp-1)" /protein_id="17559254" /db_xref="GI:17559254" /db_xref="AceView/WormGenes:elp-1" /db_xref="LocusID:180358" // > 15983_NC_003283 protein_id:25153882; Caenorhabditis elegans chromosome V, complete sequence. /gene="hif-1"; intron(phase:21001210,position:7,71,123,228,414,523,607,665); exon(number:9,size:6,64,52,105,186,109,84,58,55,sum:719); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(20778561..20778580,20779374..20779564, 20779691..20779845,20779891..20780205,20780723..20781281, 20781797..20782124,20782201..20782451,20782532..20782704, 20782753..20782920) /gene="hif-1" /locus_tag="5V253" /codon_start=1 /evidence=experimental /product="hypoxia Inducible Factor HIF-1, mammalian HIF (hypoxia inducible factor) homolog, Helix Loop Helix containing protein (79.9 kD) (hif-1)" /protein_id="25153882" /db_xref="GI:25153882" /db_xref="AceView/WormGenes:hif-1" /db_xref="LocusID:180359" // > 15989_NC_003283 protein_id:17565730; Caenorhabditis elegans chromosome V, complete sequence. /gene="5V283"; intron(phase:110,position:25,51,94); exon(number:4,size:24,26,43,30,sum:123); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS join(20809973..20810045,20810099..20810176, 20810229..20810356,20811407..20811499) /gene="5V283" /locus_tag="5V283" /codon_start=1 /product="predicted CDS, putative protein (5V283)" /protein_id="17565730" /db_xref="GI:17565730" /db_xref="AceView/WormGenes:5V283" /db_xref="LocusID:189902" // > 16000_NC_003283 protein_id:17560376; Caenorhabditis elegans chromosome V, complete sequence. /gene="5V318"; intron(phase:122,position:111,150,260); exon(number:4,size:110,39,110,74,sum:333); {splice:gtag,gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(20846019..20846241,20846921..20847250, 20847585..20847702,20848395..20848725)) /gene="5V318" /locus_tag="5V318" /codon_start=1 /product="bone morphogenetic protein 1 family member (5V318)" /protein_id="17560376" /db_xref="GI:17560376" /db_xref="AceView/WormGenes:5V318" /db_xref="LocusID:185147" // > 16003_NC_003283 protein_id:17560380; Caenorhabditis elegans chromosome V, complete sequence. /gene="5V328"; intron(phase:20,position:79,211); exon(number:3,size:78,132,56,sum:266); {splice:gtag,gtag} LOCUS NC_003283 20922239 bp DNA linear INV 18-JUL-2003 DEFINITION Caenorhabditis elegans chromosome V, complete sequence. ACCESSION NC_003283 VERSION NC_003283.3 GI:32967584 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20922239) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 20922239) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..20922239 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="V" _HEADER_END_ CDS complement(join(20857403..20857573,20857618..20858011, 20858806..20859041)) /gene="5V328" /locus_tag="5V328" /codon_start=1 /product="serine protease, trypsin family (5V328)" /protein_id="17560380" /db_xref="GI:17560380" /db_xref="AceView/WormGenes:5V328" /db_xref="LocusID:185148" // > 16016_NC_003284 protein_id:17570369; Caenorhabditis elegans chromosome X, complete sequence. /gene="XA670"; intron(phase:1210122,position:71,88,108,129,176,187,204); exon(number:8,size:70,17,20,21,47,11,17,36,sum:239); {splice:gtag,gtag,gcag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(32470..32578,32807..32857,33997..34030, 34088..34229,34279..34340,34381..34439,35690..35741, 36042..36252)) /gene="XA670" /locus_tag="XA670" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (XA670)" /protein_id="17570369" /db_xref="GI:17570369" /db_xref="AceView/WormGenes:XA670" /db_xref="LocusID:189596" // > 16049_NC_003284 protein_id:17570517; Caenorhabditis elegans chromosome X, complete sequence. /gene="XA839"; intron(phase:0,position:42); exon(number:2,size:41,20,sum:61); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(211441..211563,211614..211676) /gene="XA839" /locus_tag="XA839" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (XA839)" /protein_id="17570517" /db_xref="GI:17570517" /db_xref="AceView/WormGenes:XA839" /db_xref="LocusID:190642" // > 16085_NC_003284 protein_id:17551248; Caenorhabditis elegans chromosome X, complete sequence. /gene="che-2"; intron(phase:2110022201020,position:55,85,122,212,258,299,358,383,459,528,611,698,740); exon(number:14,size:54,30,37,90,46,41,59,25,76,69,83,87,42,21,sum:760); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gcag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(472036..472199,473150..473238,473334..473444, 473497..473765,473813..473950,474171..474295, 474343..474519,474563..474637,475117..475342, 475395..475602,475646..475893,476408..476670, 476716..476839,476953..477018) /gene="che-2" /locus_tag="XB103" /codon_start=1 /evidence=experimental /product="abnormal CHEmotaxis CHE-2, WD40 protein required for sensory cilia formation and chemotaxis (84.9 kD) (che-2)" /protein_id="17551248" /db_xref="GI:17551248" /db_xref="AceView/WormGenes:che-2" /db_xref="LocusID:180401" // > 16113_NC_003284 protein_id:17569871; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB288"; intron(phase:0202,position:26,59,105,141); exon(number:5,size:25,33,46,36,40,sum:180); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(660340..660460,660658..660767, 660812..660947,661114..661214,661310..661384)) /gene="XB288" /locus_tag="XB288" /codon_start=1 /product="misexpression suppressor of KSR 4 like (XB288)" /protein_id="17569871" /db_xref="GI:17569871" /db_xref="AceView/WormGenes:XB288" /db_xref="LocusID:188606" // > 16129_NC_003284 protein_id:17569615; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB396"; intron(phase:0100000000,position:37,82,140,170,252,319,381,430,480,498); exon(number:11,size:36,45,58,30,82,67,62,49,50,18,104,sum:601); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(771111..771425,771668..771721, 771780..771929,771976..772122,772180..772365, 772990..773190,773877..774122,774166..774255, 774751..774923,774968..775103,776100..776207)) /gene="XB396" /locus_tag="XB396" /codon_start=1 /product="predicted CDS, putative protein (XB396)" /protein_id="17569615" /db_xref="GI:17569615" /db_xref="AceView/WormGenes:XB396" /db_xref="LocusID:188069" // > 16136_NC_003284 protein_id:17567571; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB455"; intron(phase:120010000,position:66,90,111,130,218,268,344,396,433); exon(number:10,size:65,24,21,19,88,50,76,52,37,17,sum:449); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(825372..825567,825625..825697,825929..825989, 826234..826290,826366..826630,826681..826829, 826874..827101,827163..827318,828045..828155, 828201..828254) /gene="XB455" /locus_tag="XB455" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with 3 coiled coil-4 domains (XB455)" /protein_id="17567571" /db_xref="GI:17567571" /db_xref="AceView/WormGenes:XB455" /db_xref="LocusID:180432" // > 16147_NC_003284 protein_id:25153542; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB533"; intron(phase:0,position:31); exon(number:2,size:30,62,sum:92); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(903909..903998,904509..904697) /gene="XB533" /locus_tag="XB533" /codon_start=1 /product="predicted CDS, putative protein (XB533)" /protein_id="25153542" /db_xref="GI:25153542" /db_xref="AceView/WormGenes:XB533" /db_xref="LocusID:266942" // > 16148_NC_003284 protein_id:17569443; Caenorhabditis elegans chromosome X, complete sequence. /gene="sel-12"; intron(phase:022111,position:19,82,152,259,287,356); exon(number:7,size:18,63,70,107,28,69,89,sum:444); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(906456..906509,906580..906770,907075..907284, 907330..907649,907711..907794,907844..908050, 908473..908741) /gene="sel-12" /locus_tag="XB535" /codon_start=1 /evidence=experimental /product="Suppressor/Enhancer of Lin-12 SEL-12, SUppressor of Multi-vulva phenotype SUM-1, presenilin, membrane protein facilitator of Notch receptors signaling (50.0 kD) (sel-12)" /protein_id="17569443" /db_xref="GI:17569443" /db_xref="AceView/WormGenes:sel-12" /db_xref="LocusID:180441" // > 16150_NC_003284 protein_id:17567491; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB538"; intron(phase:1210000211,position:31,70,138,177,254,297,360,435,502,544); exon(number:11,size:30,39,68,39,77,43,63,75,67,42,61,sum:604); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(910889..911073,911838..911963, 912019..912218,912274..912500,912593..912781, 912829..912957,913061..913291,913341..913456, 913972..914174,914222..914339,914387..914477)) /gene="XB538" /locus_tag="XB538" /codon_start=1 /evidence=experimental /product="phosphatidylinositol (XB538)" /protein_id="17567491" /db_xref="GI:17567491" /db_xref="AceView/WormGenes:XB538" /db_xref="LocusID:180443" // > 16176_NC_003284 protein_id:17568671; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB686"; intron(phase:01210,position:20,78,110,154,197); exon(number:6,size:19,58,32,44,43,33,sum:229); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1057370..1057471,1057522..1057649, 1058118..1058248,1058291..1058387,1058938..1059112, 1059558..1059614)) /gene="XB686" /locus_tag="XB686" /codon_start=1 /product="putative nuclear protein of bilaterial origin (XB686)" /protein_id="17568671" /db_xref="GI:17568671" /db_xref="AceView/WormGenes:XB686" /db_xref="LocusID:186954" // > 16177_NC_003284 protein_id:17568919; Caenorhabditis elegans chromosome X, complete sequence. /gene="lim-6"; intron(phase:202010,position:29,66,106,150,175,224); exon(number:7,size:28,37,40,44,25,49,96,sum:319); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1065517..1065602,1066448..1066556,1066862..1066983, 1068190..1068319,1068606..1068681,1068727..1068872, 1068930..1069220) /gene="lim-6" /locus_tag="XB697" /codon_start=1 /evidence=experimental /product="LIM domain protein (lim-6)" /protein_id="17568919" /db_xref="GI:17568919" /db_xref="AceView/WormGenes:lim-6" /db_xref="LocusID:180459" // > 16178_NC_003284 protein_id:17568673; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB698"; intron(phase:001,position:38,54,95); exon(number:4,size:37,16,41,32,sum:126); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1070127..1070224,1070277..1070400, 1070447..1070494,1071096..1071206)) /gene="XB698" /locus_tag="XB698" /codon_start=1 /evidence=experimental /product="profilin 1B (XB698)" /protein_id="17568673" /db_xref="GI:17568673" /db_xref="AceView/WormGenes:XB698" /db_xref="LocusID:180460" // > 16185_NC_003284 protein_id:17550158; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB736"; intron(phase:00001,position:22,66,100,138,188); exon(number:6,size:21,44,34,38,50,62,sum:249); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1107928..1108115,1108502..1108652, 1109046..1109159,1109216..1109317,1109739..1109870, 1109916..1109978)) /gene="XB736" /locus_tag="XB736" /codon_start=1 /evidence=experimental /product="putative protein, with at least 3 transmembrane domains (28.1 kD) (XB736)" /protein_id="17550158" /db_xref="GI:17550158" /db_xref="AceView/WormGenes:XB736" /db_xref="LocusID:180465" // > 16194_NC_003284 protein_id:17569783; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB806"; intron(phase:002002,position:62,86,110,196,252,318); exon(number:7,size:61,24,24,86,56,66,17,sum:334); {splice:gtag,gtag,gtag,gcag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1178772..1178823,1180048..1180247, 1180423..1180590,1180796..1181051,1181101..1181174, 1181262..1181333,1182172..1182354)) /gene="XB806" /locus_tag="XB806" /codon_start=1 /product="predicted CDS, homocysteine S-methyltransferase MmuM (XB806)" /protein_id="17569783" /db_xref="GI:17569783" /db_xref="AceView/WormGenes:XB806" /db_xref="LocusID:188484" // > 16199_NC_003284 protein_id:17551058; Caenorhabditis elegans chromosome X, complete sequence. /gene="XB827"; intron(phase:1111,position:19,71,99,126); exon(number:5,size:18,52,28,27,90,sum:215); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1199990..1200044,1200186..1200341,1200733..1200816, 1200863..1200943,1200991..1201262) /gene="XB827" /locus_tag="XB827" /codon_start=1 /product="putative protein (XB827)" /protein_id="17551058" /db_xref="GI:17551058" /db_xref="AceView/WormGenes:XB827" /db_xref="LocusID:183519" // > 16228_NC_003284 protein_id:17568515; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC12"; intron(phase:1,position:25); exon(number:2,size:24,25,sum:49); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1386932..1387008,1387058..1387130)) /gene="XC12" /locus_tag="XC12" /codon_start=1 /product="putative protein (XC12)" /protein_id="17568515" /db_xref="GI:17568515" /db_xref="AceView/WormGenes:XC12" /db_xref="LocusID:186809" // > 16231_NC_003284 protein_id:17570657; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC21"; intron(phase:2,position:71); exon(number:2,size:70,39,sum:109); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1394323..1394534,1394579..1394696) /gene="XC21" /locus_tag="XC21" /codon_start=1 /product="predicted CDS, SPK containing protein family member (XC21)" /protein_id="17570657" /db_xref="GI:17570657" /db_xref="AceView/WormGenes:XC21" /db_xref="LocusID:191312" // > 16280_NC_003284 protein_id:17551452; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC339"; intron(phase:000000,position:51,70,107,132,152,179); exon(number:7,size:50,19,37,25,20,27,13,sum:191); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1717935..1718084,1718151..1718207,1718683..1718793, 1718840..1718914,1718966..1719025,1719089..1719169, 1719517..1719558) /gene="XC339" /locus_tag="XC339" /codon_start=1 /product="predicted CDS, putative secreted or extracellular protein precursor (XC339)" /protein_id="17551452" /db_xref="GI:17551452" /db_xref="AceView/WormGenes:XC339" /db_xref="LocusID:184150" // > 16282_NC_003284 protein_id:17570525; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC361"; intron(phase:2,position:83); exon(number:2,size:82,98,sum:180); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1733427..1733674,1733808..1734102) /gene="XC361" /locus_tag="XC361" /codon_start=1 /product="putative nuclear protein (XC361)" /protein_id="17570525" /db_xref="GI:17570525" /db_xref="AceView/WormGenes:XC361" /db_xref="LocusID:190722" // > 16286_NC_003284 protein_id:17567399; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC395"; intron(phase:22,position:144,251); exon(number:3,size:143,107,40,sum:290); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1770017..1770447,1770616..1770936,1770986..1771106) /gene="XC395" /locus_tag="XC395" /codon_start=1 /product="putative protein family member (XC395)" /protein_id="17567399" /db_xref="GI:17567399" /db_xref="AceView/WormGenes:XC395" /db_xref="LocusID:185139" // > 16298_NC_003284 protein_id:17551246; Caenorhabditis elegans chromosome X, complete sequence. /gene="ceh-41"; intron(phase:012,position:16,133,202); exon(number:4,size:15,117,69,77,sum:278); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1837735..1837966,1838333..1838540, 1838623..1838974,1839209..1839253)) /gene="ceh-41" /locus_tag="XC466" /codon_start=1 /evidence=experimental /product="C.Elegans Homeobox (ceh-41)" /protein_id="17551246" /db_xref="GI:17551246" /db_xref="AceView/WormGenes:ceh-41" /db_xref="LocusID:180503" // > 16303_NC_003284 protein_id:17570411; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC497"; intron(phase:00010,position:28,44,71,133,152); exon(number:6,size:27,16,27,62,19,30,sum:181); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(1869955..1870035,1870092..1870139,1870199..1870279, 1870370..1870556,1870865..1870920,1870978..1871070) /gene="XC497" /locus_tag="XC497" /codon_start=1 /product="putative nuclear protein (XC497)" /protein_id="17570411" /db_xref="GI:17570411" /db_xref="AceView/WormGenes:XC497" /db_xref="LocusID:190411" // > 16307_NC_003284 protein_id:17570573; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC526"; intron(phase:222221,position:15,51,107,159,222,306); exon(number:7,size:14,36,56,52,63,84,101,sum:406); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(1901979..1902283,1902365..1902615, 1902722..1902910,1903221..1903376,1903425..1903592, 1903639..1903746,1903791..1903834)) /gene="XC526" /locus_tag="XC526" /codon_start=1 /product="putative protein (XC526)" /protein_id="17570573" /db_xref="GI:17570573" /db_xref="AceView/WormGenes:XC526" /db_xref="LocusID:191066" // > 16333_NC_003284 protein_id:17570553; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC658"; intron(phase:110111,position:2,32,77,144,195,484); exon(number:7,size:1,30,45,67,51,289,58,sum:541); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(2030286..2030461,2030518..2031384, 2031592..2031744,2031857..2032058,2033151..2033284, 2036413..2036502,2036757..2036760)) /gene="XC658" /locus_tag="XC658" /codon_start=1 /evidence=experimental /product="growth factor receptor (62.1 kD) (XC658)" /protein_id="17570553" /db_xref="GI:17570553" /db_xref="AceView/WormGenes:XC658" /db_xref="LocusID:180518" // > 16349_NC_003284 protein_id:17551382; Caenorhabditis elegans chromosome X, complete sequence. /gene="dpy-3"; intron(phase:0,position:56); exon(number:2,size:55,247,sum:302); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(2135233..2135976,2136059..2136223)) /gene="dpy-3" /locus_tag="XC764" /codon_start=1 /evidence=experimental /product="DumPY : shorter than wild-type DPY-3, collagen family member (29.6 kD) (dpy-3)" /protein_id="17551382" /db_xref="GI:17551382" /db_xref="AceView/WormGenes:dpy-3" /db_xref="LocusID:180529" // > 16355_NC_003284 protein_id:17567885; Caenorhabditis elegans chromosome X, complete sequence. /gene="XC790"; intron(phase:02202,position:56,90,125,166,218); exon(number:6,size:55,34,35,41,52,46,sum:263); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(2164606..2164744,2165375..2165532, 2165579..2165699,2165748..2165852,2165900..2166003, 2166802..2166966)) /gene="XC790" /locus_tag="XC790" /codon_start=1 /product="predicted CDS, autosomal Highly Conserved Protein like (XC790)" /protein_id="17567885" /db_xref="GI:17567885" /db_xref="AceView/WormGenes:XC790" /db_xref="LocusID:185970" // > 16394_NC_003284 protein_id:17569661; Caenorhabditis elegans chromosome X, complete sequence. /gene="XD36"; intron(phase:11110,position:52,126,176,223,282); exon(number:6,size:51,74,50,47,59,2,sum:283); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(2409003..2409011,2409155..2409330, 2409373..2409513,2409558..2409707,2410299..2410520, 2411075..2411228)) /gene="XD36" /locus_tag="XD36" /codon_start=1 /product="predicted CDS, soluble guanylyl cyclase GCY-31a like (XD36)" /protein_id="17569661" /db_xref="GI:17569661" /db_xref="AceView/WormGenes:XD36" /db_xref="LocusID:188220" // > 16413_NC_003284 protein_id:17568041; Caenorhabditis elegans chromosome X, complete sequence. /gene="XD178"; intron(phase:000202,position:73,120,203,290,416,475); exon(number:7,size:72,47,83,87,126,59,51,sum:525); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(2550697..2550850,2550896..2551074, 2551118..2551493,2552592..2552854,2553092..2553340, 2554321..2554461,2554508..2554723)) /gene="XD178" /locus_tag="XD178" /codon_start=1 /evidence=experimental /product="24-dehydrocholesterol reductase (XD178)" /protein_id="17568041" /db_xref="GI:17568041" /db_xref="AceView/WormGenes:XD178" /db_xref="LocusID:186134" // > 16476_NC_003284 protein_id:17568855; Caenorhabditis elegans chromosome X, complete sequence. /gene="XD726"; intron(phase:2221000120002002,position:89,142,184,217,270,293,331,377,425,457,498,570,613,639,670,713); exon(number:17,size:88,53,42,33,53,23,38,46,48,32,41,72,43,26,31,43,45,sum:757); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3097209..3097344,3097391..3097521, 3098370..3098462,3098512..3098587,3098822..3098952, 3099000..3099215,3099266..3099388,3099506..3099599, 3099644..3099788,3099832..3099970,3100024..3100137, 3100195..3100263,3100517..3100674,3100720..3100817, 3100878..3101003,3101045..3101203,3101651..3101916)) /gene="XD726" /locus_tag="XD726" /codon_start=1 /evidence=experimental /product="glycerophosphoryl diester phosphodiesterase family member (XD726)" /protein_id="17568855" /db_xref="GI:17568855" /db_xref="AceView/WormGenes:XD726" /db_xref="LocusID:180600" // > 16496_NC_003284 protein_id:25150395; Caenorhabditis elegans chromosome X, complete sequence. /gene="pqn-37"; intron(phase:1111,position:71,92,147,181); exon(number:5,size:70,21,55,34,52,sum:232); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3237791..3237948,3238262..3238363, 3238502..3238666,3239212..3239274,3239324..3239534)) /gene="pqn-37" /locus_tag="XD866" /codon_start=1 /product="predicted CDS, prion-like Q/N-rich domain protein PQN-37, Prion-like Q/N-rich domain protein (pqn-37)" /protein_id="25150395" /db_xref="GI:25150395" /db_xref="AceView/WormGenes:pqn-37" /db_xref="LocusID:185539" // > 16507_NC_003284 protein_id:17568789; Caenorhabditis elegans chromosome X, complete sequence. /gene="XD905"; intron(phase:221221002102000,position:57,97,152,214,239,281,304,341,379,406,444,488,513,528,546); exon(number:16,size:56,40,55,62,25,42,23,37,38,27,38,44,25,15,18,15,sum:560); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(3273248..3273417,3273463..3273582,3273631..3273794, 3273839..3274025,3274088..3274162,3274208..3274332, 3274386..3274453,3274521..3274631,3274678..3274793, 3274841..3274920,3275484..3275596,3275647..3275780, 3275829..3275901,3275952..3275996,3276057..3276110, 3276168..3276215) /gene="XD905" /locus_tag="XD905" /codon_start=1 /evidence=experimental /product="sugar transporter family member (63.1 kD) (XD905)" /protein_id="17568789" /db_xref="GI:17568789" /db_xref="AceView/WormGenes:XD905" /db_xref="LocusID:187195" // > 16543_NC_003284 protein_id:17550370; Caenorhabditis elegans chromosome X, complete sequence. /gene="XE132"; intron(phase:011,position:15,236,247); exon(number:4,size:14,221,11,23,sum:269); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3505014..3505084,3505259..3505291, 3505541..3506204,3506266..3506307)) /gene="XE132" /locus_tag="XE132" /codon_start=1 /product="predicted CDS, RNA-directed DNA polymerase family member (XE132)" /protein_id="17550370" /db_xref="GI:17550370" /db_xref="AceView/WormGenes:XE132" /db_xref="LocusID:182548" // > 16549_NC_003284 protein_id:17570197; Caenorhabditis elegans chromosome X, complete sequence. /gene="vit-3"; intron(phase:00201,position:289,384,1396,1473,1518); exon(number:6,size:288,95,1012,77,45,86,sum:1603); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3558030..3558289,3558341..3558476, 3558526..3558754,3558804..3561841,3561889..3562173, 3562249..3563112)) /gene="vit-3" /locus_tag="XE184" /codon_start=1 /evidence=experimental /product="yolk protein VITellogenin structural gene (vit-3)" /protein_id="17570197" /db_xref="GI:17570197" /db_xref="AceView/WormGenes:vit-3" /db_xref="LocusID:180647" // > 16584_NC_003284 protein_id:17567825; Caenorhabditis elegans chromosome X, complete sequence. /gene="XE388"; intron(phase:0011,position:27,66,115,158); exon(number:5,size:26,39,49,43,58,sum:215); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3760300..3760475,3760527..3760655, 3760706..3760853,3760907..3761023,3761135..3761212)) /gene="XE388" /locus_tag="XE388" /codon_start=1 /product="predicted CDS, putative nuclear protein (XE388)" /protein_id="17567825" /db_xref="GI:17567825" /db_xref="AceView/WormGenes:XE388" /db_xref="LocusID:185893" // > 16598_NC_003284 protein_id:17568917; Caenorhabditis elegans chromosome X, complete sequence. /gene="lim-4"; intron(phase:0222002,position:91,116,151,201,256,289,337); exon(number:8,size:90,25,35,50,55,33,48,19,sum:355); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3860318..3860375,3860419..3860564, 3860613..3860711,3860758..3860920,3860973..3861122, 3862935..3863039,3863086..3863162,3863591..3863860)) /gene="lim-4" /locus_tag="XE490" /codon_start=1 /evidence=experimental /product="LIM domain protein (39.6 kD) (lim-4)" /protein_id="17568917" /db_xref="GI:17568917" /db_xref="AceView/WormGenes:lim-4" /db_xref="LocusID:180672" // > 16603_NC_003284 protein_id:17569943; Caenorhabditis elegans chromosome X, complete sequence. /gene="XE526"; intron(phase:0,position:38); exon(number:2,size:37,47,sum:84); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(3899863..3900006,3900113..3900223)) /gene="XE526" /locus_tag="XE526" /codon_start=1 /product="predicted CDS, putative nuclear protein (XE526)" /protein_id="17569943" /db_xref="GI:17569943" /db_xref="AceView/WormGenes:XE526" /db_xref="LocusID:188721" // > 16623_NC_003284 protein_id:17551562; Caenorhabditis elegans chromosome X, complete sequence. /gene="XE728"; intron(phase:000,position:47,83,118); exon(number:4,size:46,36,35,48,sum:165); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(4101126..4101272,4101336..4101440, 4101488..4101595,4101832..4101969)) /gene="XE728" /locus_tag="XE728" /codon_start=1 /product="putative protein (XE728)" /protein_id="17551562" /db_xref="GI:17551562" /db_xref="AceView/WormGenes:XE728" /db_xref="LocusID:184263" // > 16657_NC_003284 protein_id:17550600; Caenorhabditis elegans chromosome X, complete sequence. /gene="pqn-15"; intron(phase:02100110000000000,position:43,116,165,201,234,275,318,359,398,591,607,625,642,660,677,744,769); exon(number:18,size:42,73,49,36,33,41,43,41,39,193,16,18,17,18,17,67,25,449,sum:1217); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(4293836..4295185,4295239..4295313, 4295780..4295980,4296031..4296081,4296152..4296205, 4296250..4296300,4296577..4296630,4296679..4296726, 4296948..4297526,4298023..4298139,4298757..4298878, 4298926..4299054,4299106..4299229,4299278..4299376, 4299611..4299717,4299785..4299930,4300872..4301092, 4302200..4302325)) /gene="pqn-15" /locus_tag="XE922" /codon_start=1 /product="predicted CDS, prion-like Q/N-rich domain protein PQN-15, Prion-like Q/N-rich domain protein (pqn-15)" /protein_id="17550600" /db_xref="GI:17550600" /db_xref="AceView/WormGenes:pqn-15" /db_xref="LocusID:182830" // > 16666_NC_003284 protein_id:17567001; Caenorhabditis elegans chromosome X, complete sequence. /gene="XE980"; intron(phase:2,position:33); exon(number:2,size:32,67,sum:99); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(4352485..4352686,4352744..4352841)) /gene="XE980" /locus_tag="XE980" /codon_start=1 /product="putative protein (XE980)" /protein_id="17567001" /db_xref="GI:17567001" /db_xref="AceView/WormGenes:XE980" /db_xref="LocusID:184503" // > 16699_NC_003284 protein_id:17550180; Caenorhabditis elegans chromosome X, complete sequence. /gene="amt-1"; intron(phase:11002001,position:43,151,183,230,339,395,424,490); exon(number:9,size:42,108,32,47,109,56,29,66,45,sum:534); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(4562024..4562150,4562196..4562519,4562585..4562679, 4562735..4562875,4562922..4563250,4563294..4563459, 4563505..4563591,4563986..4564184,4564231..4564367) /gene="amt-1" /locus_tag="XF191" /codon_start=1 /evidence=experimental /product="AMmonium Transporter homolog (58.4 kD) (amt-1)" /protein_id="17550180" /db_xref="GI:17550180" /db_xref="AceView/WormGenes:amt-1" /db_xref="LocusID:180729" // > 16706_NC_003284 protein_id:25153231; Caenorhabditis elegans chromosome X, complete sequence. /gene="XF222"; intron(phase:00012,position:19,136,177,496,701); exon(number:6,size:18,117,41,319,205,20,sum:720); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(4593904..4593964,4594011..4594626, 4594682..4595639,4595689..4595811,4595859..4596209, 4596399..4596452)) /gene="XF222" /locus_tag="XF222" /codon_start=1 /evidence=experimental /product="ring finger protein (XF222)" /protein_id="25153231" /db_xref="GI:25153231" /db_xref="AceView/WormGenes:XF222" /db_xref="LocusID:259704" // > 16717_NC_003284 protein_id:17568637; Caenorhabditis elegans chromosome X, complete sequence. /gene="XF308"; intron(phase:221212101201,position:23,80,113,174,215,248,290,323,371,435,480,605); exon(number:13,size:22,57,33,61,41,33,42,33,48,64,45,125,51,sum:655); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(4678646..4678800,4679240..4679615, 4679661..4679793,4679855..4680047,4680091..4680235, 4680283..4680380,4680426..4680550,4680598..4680697, 4680745..4680866,4680964..4681147,4681192..4681289, 4681577..4681747,4681804..4681871)) /gene="XF308" /locus_tag="XF308" /codon_start=1 /evidence=experimental /product="solute carrier family 21 member (XF308)" /protein_id="17568637" /db_xref="GI:17568637" /db_xref="AceView/WormGenes:XF308" /db_xref="LocusID:180742" // > 16731_NC_003284 protein_id:17567695; Caenorhabditis elegans chromosome X, complete sequence. /gene="XF407"; intron(phase:111,position:23,71,115); exon(number:4,size:22,48,44,45,sum:159); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(4776791..4776857,4779390..4779533,4780050..4780181, 4780567..4780703) /gene="XF407" /locus_tag="XF407" /codon_start=1 /evidence=experimental /product="calmodulin (18.2 kD) (XF407)" /protein_id="17567695" /db_xref="GI:17567695" /db_xref="AceView/WormGenes:XF407" /db_xref="LocusID:180753" // > 16786_NC_003284 protein_id:17570635; Caenorhabditis elegans chromosome X, complete sequence. /gene="zig-6"; intron(phase:211,position:55,105,152); exon(number:4,size:54,50,47,43,sum:194); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(5178682..5178812,5178857..5178997, 5179049..5179197,5179250..5179413)) /gene="zig-6" /locus_tag="XF804" /codon_start=1 /product="2 (Zwei) IG-domain protein (zig-6)" /protein_id="17570635" /db_xref="GI:17570635" /db_xref="AceView/WormGenes:zig-6" /db_xref="LocusID:192089" // > 16821_NC_003284 protein_id:17550094; Caenorhabditis elegans chromosome X, complete sequence. /gene="XG10"; intron(phase:021112,position:91,133,171,227,262,309); exon(number:7,size:90,42,38,56,35,47,8,sum:316); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(5385113..5385137,5385182..5385323, 5385787..5385891,5385940..5386107,5386167..5386279, 5386516..5386643,5387209..5387478)) /gene="XG10" /locus_tag="XG10" /codon_start=1 /product="metallo-beta-lactamase like (XG10)" /protein_id="17550094" /db_xref="GI:17550094" /db_xref="AceView/WormGenes:XG10" /db_xref="LocusID:182165" // > 16839_NC_003284 protein_id:17551176; Caenorhabditis elegans chromosome X, complete sequence. /gene="XG140"; intron(phase:022010,position:28,76,102,186,283,385); exon(number:7,size:27,48,26,84,97,102,96,sum:480); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(5510729..5511019,5511287..5511591, 5511642..5511933,5511981..5512230,5512930..5513007, 5513077..5513222,5513276..5513356)) /gene="XG140" /locus_tag="XG140" /codon_start=1 /evidence=experimental /product="membrane bound O-acyl transferase, MBOAT (55.3 kD) (XG140)" /protein_id="17551176" /db_xref="GI:17551176" /db_xref="AceView/WormGenes:XG140" /db_xref="LocusID:180824" // > 16860_NC_003284 protein_id:17570215; Caenorhabditis elegans chromosome X, complete sequence. /gene="XG314"; intron(phase:01200210,position:132,189,217,282,317,347,407,445); exon(number:9,size:131,57,28,65,35,30,60,38,67,sum:511); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(5685375..5685578,5685630..5685742, 5685791..5685969,5686039..5686130,5686182..5686286, 5686354..5686546,5687000..5687084,5687224..5687395, 5687449..5687841)) /gene="XG314" /locus_tag="XG314" /codon_start=1 /evidence=experimental /product="putative secreted protein family member (57.6 kD) (XG314)" /protein_id="17570215" /db_xref="GI:17570215" /db_xref="AceView/WormGenes:XG314" /db_xref="LocusID:180836" // > 16877_NC_003284 protein_id:25147413; Caenorhabditis elegans chromosome X, complete sequence. /gene="XG452"; intron(phase:21020120010,position:25,43,81,108,138,166,213,239,284,307,348); exon(number:12,size:24,18,38,27,30,28,47,26,45,23,41,32,sum:379); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(5822593..5822691,5822739..5822860, 5823145..5823214,5823268..5823402,5823673..5823748, 5824152..5824293,5824336..5824420,5824468..5824555, 5824919..5825001,5825134..5825246,5825295..5825347, 5826732..5826805)) /gene="XG452" /locus_tag="XG452" /codon_start=1 /evidence=experimental /product="oxidoreductase (XG452)" /protein_id="25147413" /db_xref="GI:25147413" /db_xref="AceView/WormGenes:XG452" /db_xref="LocusID:184416" // > 16905_NC_003284 protein_id:17550276; Caenorhabditis elegans chromosome X, complete sequence. /gene="hsp-25"; intron(phase:21120,position:13,61,107,142,184); exon(number:6,size:12,48,46,35,42,36,sum:219); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6025289..6025399,6025522..6025645, 6026211..6026316,6028099..6028236,6029636..6029778, 6029968..6030005)) /gene="hsp-25" /locus_tag="XG654" /codon_start=1 /evidence=experimental /product="heat shock protein (hsp-25)" /protein_id="17550276" /db_xref="GI:17550276" /db_xref="AceView/WormGenes:hsp-25" /db_xref="LocusID:180872" // > 16934_NC_003284 protein_id:17569771; Caenorhabditis elegans chromosome X, complete sequence. /gene="XG806"; intron(phase:001,position:5,90,139); exon(number:4,size:4,85,49,82,sum:220); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6182147..6182394,6182447..6182594, 6182645..6182899,6183479..6183490)) /gene="XG806" /locus_tag="XG806" /codon_start=1 /product="aristaless (XG806)" /protein_id="17569771" /db_xref="GI:17569771" /db_xref="AceView/WormGenes:XG806" /db_xref="LocusID:188474" // > 16935_NC_003284 protein_id:25147214; Caenorhabditis elegans chromosome X, complete sequence. /gene="daf-9"; intron(phase:011002221,position:22,134,153,228,274,312,345,430,524); exon(number:10,size:21,112,19,75,46,38,33,85,94,34,sum:557); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(6188636..6188698,6188880..6189216,6189270..6189326, 6189637..6189860,6189909..6190046,6190091..6190206, 6190256..6190354,6190408..6190662,6190714..6190994, 6191043..6191146) /gene="daf-9" /locus_tag="XG819" /codon_start=1 /evidence=experimental /product="cytochrome P450, regulates dauer larva development, cell migration and adult lifespan, abnormal DAuer Formation DAF-9, abnormal cell MIGration MIG-8 (64.8 kD) (daf-9)" /protein_id="25147214" /db_xref="GI:25147214" /db_xref="AceView/WormGenes:daf-9" /db_xref="LocusID:180889" // > 16949_NC_003284 protein_id:25151766; Caenorhabditis elegans chromosome X, complete sequence. /gene="XG906"; intron(phase:11011211111,position:14,75,118,143,201,287,341,376,437,490,542); exon(number:12,size:13,61,43,25,58,86,54,35,61,53,52,34,sum:575); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6277080..6277183,6277229..6277384, 6277427..6277585,6279361..6279543,6279591..6279695, 6279740..6279900,6279955..6280213,6280591..6280764, 6280834..6280909,6280962..6281089,6281639..6281821, 6281887..6281926)) /gene="XG906" /locus_tag="XG906" /codon_start=1 /evidence=experimental /product="sushi domain/SCR domain/CCP module (XG906)" /protein_id="25151766" /db_xref="GI:25151766" /db_xref="AceView/WormGenes:XG906" /db_xref="LocusID:180903" // > 16974_NC_003284 protein_id:17568859; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH50"; intron(phase:012,position:22,81,120); exon(number:4,size:21,59,39,89,sum:208); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6422850..6423117,6423731..6423848, 6424022..6424199,6424265..6424327)) /gene="XH50" /locus_tag="XH50" /codon_start=1 /product="putative endoplasmic reticulum protein, with at least 3 transmembrane domains (XH50)" /protein_id="17568859" /db_xref="GI:17568859" /db_xref="AceView/WormGenes:XH50" /db_xref="LocusID:187252" // > 16977_NC_003284 protein_id:17568863; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH66"; intron(phase:02110,position:29,104,186,238,323); exon(number:6,size:28,75,82,52,85,96,sum:418); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6437371..6437661,6437766..6438019, 6438145..6438300,6438347..6438591,6439085..6439311, 6439364..6439447)) /gene="XH66" /locus_tag="XH66" /codon_start=1 /evidence=experimental /product="fumarylacetoacetate hydrolase (46.0 kD) (XH66)" /protein_id="17568863" /db_xref="GI:17568863" /db_xref="AceView/WormGenes:XH66" /db_xref="LocusID:180918" // > 17014_NC_003284 protein_id:17567509; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH311"; intron(phase:0210022,position:33,84,114,152,188,212,240); exon(number:8,size:32,51,30,38,36,24,28,29,sum:268); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(6682797..6682892,6684260..6684414,6684466..6684554, 6685230..6685342,6685693..6685800,6685848..6685921, 6685972..6686055,6686100..6686187) /gene="XH311" /locus_tag="XH311" /codon_start=1 /product="predicted CDS, putative protein (XH311)" /protein_id="17567509" /db_xref="GI:17567509" /db_xref="AceView/WormGenes:XH311" /db_xref="LocusID:185453" // > 17023_NC_003284 protein_id:17568881; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH342"; intron(phase:010100,position:34,94,133,163,210,237); exon(number:7,size:33,60,39,30,47,27,54,sum:290); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6714529..6714693,6714752..6714832, 6714944..6715083,6715551..6715641,6715687..6715802, 6715873..6716053,6716099..6716197)) /gene="XH342" /locus_tag="XH342" /codon_start=1 /evidence=experimental /product="oxoglutarate/malate carrier protein (32.0 kD) (XH342)" /protein_id="17568881" /db_xref="GI:17568881" /db_xref="AceView/WormGenes:XH342" /db_xref="LocusID:180940" // > 17039_NC_003284 protein_id:17567611; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH454"; intron(phase:000,position:18,69,89); exon(number:4,size:17,51,20,46,sum:134); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6826096..6826236,6826285..6826344, 6826390..6826542,6826590..6826640)) /gene="XH454" /locus_tag="XH454" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (XH454)" /protein_id="17567611" /db_xref="GI:17567611" /db_xref="AceView/WormGenes:XH454" /db_xref="LocusID:180954" // > 17046_NC_003284 protein_id:17569125; Caenorhabditis elegans chromosome X, complete sequence. /gene="odr-10"; intron(phase:0220001,position:66,120,165,188,213,255,314); exon(number:8,size:65,54,45,23,25,42,59,26,sum:339); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(6854938..6855017,6855067..6855244, 6855289..6855414,6855459..6855533,6855576..6855642, 6855685..6855819,6856066..6856229,6856277..6856471)) /gene="odr-10" /locus_tag="XH484" /codon_start=1 /evidence=experimental /product="ODoRant response abnormal ODR-10, seven transmembrane domains olfactory receptor (39.2 kD) (odr-10)" /protein_id="17569125" /db_xref="GI:17569125" /db_xref="AceView/WormGenes:odr-10" /db_xref="LocusID:180959" // > 17062_NC_003284 protein_id:17550488; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH561"; intron(phase:001012201,position:16,78,132,186,231,271,301,431,509); exon(number:10,size:15,62,54,54,45,40,30,130,78,59,sum:567); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(6931013..6931057,6931128..6931313,6931465..6931627, 6931670..6931830,6931873..6932008,6932535..6932655, 6932734..6932823,6932871..6933258,6933309..6933543, 6933931..6934109) /gene="XH561" /locus_tag="XH561" /codon_start=1 /evidence=experimental /product="cartilage matrix protein precursor (XH561)" /protein_id="17550488" /db_xref="GI:17550488" /db_xref="AceView/WormGenes:XH561" /db_xref="LocusID:182693" // > 17072_NC_003284 protein_id:17549966; Caenorhabditis elegans chromosome X, complete sequence. /gene="ubc-17"; intron(phase:022001,position:65,123,154,276,328,409); exon(number:7,size:64,58,31,122,52,81,15,sum:423); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(7043783..7043974,7044024..7044199,7044429..7044521, 7044708..7045071,7045364..7045519,7045568..7045811, 7045858..7045904) /gene="ubc-17" /locus_tag="XH675" /codon_start=1 /evidence=experimental /product="ubiquitin conjugating enzyme (ubc-17)" /protein_id="17549966" /db_xref="GI:17549966" /db_xref="AceView/WormGenes:ubc-17" /db_xref="LocusID:181979" // > 17093_NC_003284 protein_id:17551188; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH821"; intron(phase:012100122,position:38,71,96,129,199,248,290,380,412); exon(number:10,size:37,33,25,33,70,49,42,90,32,93,sum:504); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(7190918..7191028,7191083..7191182,7191809..7191884, 7191934..7192031,7192135..7192343,7192396..7192542, 7192590..7192716,7192947..7193217,7193921..7194016, 7194075..7194354) /gene="XH821" /locus_tag="XH821" /codon_start=1 /evidence=experimental /product="glycerol kinase (XH821)" /protein_id="17551188" /db_xref="GI:17551188" /db_xref="AceView/WormGenes:XH821" /db_xref="LocusID:180984" // > 17109_NC_003284 protein_id:17569689; Caenorhabditis elegans chromosome X, complete sequence. /gene="XH933"; intron(phase:0,position:103); exon(number:2,size:102,55,sum:157); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(7303142..7303447,7303726..7303893) /gene="XH933" /locus_tag="XH933" /codon_start=1 /product="predicted CDS, putative protein family member (XH933)" /protein_id="17569689" /db_xref="GI:17569689" /db_xref="AceView/WormGenes:XH933" /db_xref="LocusID:188264" // > 17140_NC_003284 protein_id:25147840; Caenorhabditis elegans chromosome X, complete sequence. /gene="gly-12"; intron(phase:00201220202,position:42,63,94,134,173,199,287,329,348,372,433); exon(number:12,size:41,21,31,40,39,26,88,42,19,24,61,35,sum:467); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(7476700..7476822,7476875..7476937,7477007..7477101, 7477153..7477270,7477320..7477437,7477501..7477579, 7478155..7478418,7478584..7478707,7478756..7478814, 7478855..7478924,7478968..7479152,7479198..7479303) /gene="gly-12" /locus_tag="XI107" /codon_start=1 /evidence=experimental /product="GLYcosylation related, UDP-N-acetylglucosamine:a-3-D-mannosideb-1, 2-N-acetylglucosaminyltransferase I (54.4 kD) (gly-12)" /protein_id="25147840" /db_xref="GI:25147840" /db_xref="AceView/WormGenes:gly-12" /db_xref="LocusID:181005" // > 17158_NC_003284 protein_id:17551478; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI186"; intron(phase:00200,position:38,86,107,146,319); exon(number:6,size:37,48,21,39,173,37,sum:355); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7558794..7558907,7558989..7559507, 7559582..7559696,7559765..7559829,7559946..7560089, 7560136..7560246)) /gene="XI186" /locus_tag="XI186" /codon_start=1 /evidence=experimental /product="apyrase (40.3 kD) (XI186)" /protein_id="17551478" /db_xref="GI:17551478" /db_xref="AceView/WormGenes:XI186" /db_xref="LocusID:181019" // > 17159_NC_003284 protein_id:25153139; Caenorhabditis elegans chromosome X, complete sequence. /gene="unc-98"; intron(phase:000000,position:9,35,72,95,140,201); exon(number:7,size:8,26,37,23,45,61,110,sum:310); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7561166..7561498,7562302..7562484, 7562527..7562661,7563451..7563519,7563750..7563860, 7563951..7564028,7564077..7564100)) /gene="unc-98" /locus_tag="XI190" /codon_start=1 /evidence=experimental /product="UNCoordinated locomotion UNC-98, C2H2 zinc finger containing muscle protein (35.4 kD) (unc-98)" /protein_id="25153139" /db_xref="GI:25153139" /db_xref="AceView/WormGenes:unc-98" /db_xref="LocusID:181020" // > 17160_NC_003284 protein_id:25147640; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI199"; intron(phase:21100,position:7,77,116,241,287); exon(number:6,size:6,70,39,125,46,76,sum:362); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(7562883..7562902,7569293..7569501,7569765..7569881, 7569931..7570304,7570351..7570488,7571029..7571259) /gene="XI199" /locus_tag="XI199" /codon_start=1 /evidence=experimental /product="cytidylyltransferase (XI199)" /protein_id="25147640" /db_xref="GI:25147640" /db_xref="AceView/WormGenes:XI199" /db_xref="LocusID:181021" // > 17166_NC_003284 protein_id:17567343; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI276"; intron(phase:210000,position:26,58,125,342,438,673); exon(number:7,size:25,32,67,217,96,235,52,sum:724); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7648327..7648485,7648540..7649244, 7649300..7649587,7649635..7650285,7651027..7651226, 7651277..7651371,7651424..7651500)) /gene="XI276" /locus_tag="XI276" /codon_start=1 /evidence=experimental /product="propionyl-coa carboxylase (79.8 kD) (XI276)" /protein_id="17567343" /db_xref="GI:17567343" /db_xref="AceView/WormGenes:XI276" /db_xref="LocusID:181026" // > 17179_NC_003284 protein_id:17568847; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI346"; intron(phase:02210,position:26,56,220,350,371); exon(number:6,size:25,30,164,130,21,38,sum:408); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7723833..7723949,7724089..7724150, 7724346..7724734,7724987..7725478,7725979..7726070, 7726596..7726670)) /gene="XI346" /locus_tag="XI346" /codon_start=1 /product="SET-domain transcriptional regulator family (XI346)" /protein_id="17568847" /db_xref="GI:17568847" /db_xref="AceView/WormGenes:XI346" /db_xref="LocusID:187229" // > 17182_NC_003284 protein_id:17551064; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI365"; intron(phase:0,position:33); exon(number:2,size:32,41,sum:73); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(7744502..7744597,7744681..7744806) /gene="XI365" /locus_tag="XI365" /codon_start=1 /product="predicted CDS, putative protein (XI365)" /protein_id="17551064" /db_xref="GI:17551064" /db_xref="AceView/WormGenes:XI365" /db_xref="LocusID:183538" // > 17189_NC_003284 protein_id:17570645; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI402"; intron(phase:001002,position:49,127,163,629,834,915); exon(number:7,size:48,78,36,466,205,81,191,sum:1105); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7773959..7774532,7774837..7775081, 7775132..7775746,7776364..7777760,7777806..7777914, 7778026..7778259,7778304..7778447)) /gene="XI402" /locus_tag="XI402" /codon_start=1 /evidence=experimental /product="putative protein family member (125.2 kD) (XI402)" /protein_id="17570645" /db_xref="GI:17570645" /db_xref="AceView/WormGenes:XI402" /db_xref="LocusID:181039" // > 17212_NC_003284 protein_id:25151965; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI576"; intron(phase:22212,position:49,103,194,237,271); exon(number:6,size:48,54,91,43,34,49,sum:319); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7946900..7947047,7947092..7947194, 7947245..7947372,7947887..7948159,7948245..7948406, 7948677..7948822)) /gene="XI576" /locus_tag="XI576" /codon_start=1 /evidence=experimental /product="sideroflexin 2 (35.3 kD) (XI576)" /protein_id="25151965" /db_xref="GI:25151965" /db_xref="AceView/WormGenes:XI576" /db_xref="LocusID:181054" // > 17215_NC_003284 protein_id:17567723; Caenorhabditis elegans chromosome X, complete sequence. /gene="his-71"; intron(phase:01,position:25,76); exon(number:3,size:24,51,61,sum:136); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(7972071..7972255,7972308..7972461, 7972508..7972579)) /gene="his-71" /locus_tag="XI600" /codon_start=1 /evidence=experimental /product="histone, 3 (his-71)" /protein_id="17567723" /db_xref="GI:17567723" /db_xref="AceView/WormGenes:his-71" /db_xref="LocusID:181057" // > 17232_NC_003284 protein_id:17570189; Caenorhabditis elegans chromosome X, complete sequence. /gene="vem-1"; intron(phase:100,position:14,57,141); exon(number:4,size:13,43,84,58,sum:198); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(8078258..8078434,8078651..8078902, 8078962..8079089,8079815..8079854)) /gene="vem-1" /locus_tag="XI706" /codon_start=1 /evidence=experimental /product="mammalian VEntral Midline antigen related (vem-1)" /protein_id="17570189" /db_xref="GI:17570189" /db_xref="AceView/WormGenes:vem-1" /db_xref="LocusID:181066" // > 17280_NC_003284 protein_id:17567579; Caenorhabditis elegans chromosome X, complete sequence. /gene="XI993"; intron(phase:200000,position:31,84,113,165,239,263); exon(number:7,size:30,53,29,52,74,24,63,sum:325); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(8365808..8365899,8365943..8366099,8366144..8366230, 8366734..8366889,8366932..8367153,8367512..8367583, 8367633..8367824) /gene="XI993" /locus_tag="XI993" /codon_start=1 /product="neprilysin (XI993)" /protein_id="17567579" /db_xref="GI:17567579" /db_xref="AceView/WormGenes:XI993" /db_xref="LocusID:185512" // > 17286_NC_003284 protein_id:17551222; Caenorhabditis elegans chromosome X, complete sequence. /gene="XJ33"; intron(phase:222122,position:12,30,69,101,122,169); exon(number:7,size:11,18,39,32,21,47,23,sum:191); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(8402218..8402252,8403465..8403518,8403822..8403938, 8404011..8404105,8404156..8404219,8404267..8404407, 8404457..8404526) /gene="XJ33" /locus_tag="XJ33" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (XJ33)" /protein_id="17551222" /db_xref="GI:17551222" /db_xref="AceView/WormGenes:XJ33" /db_xref="LocusID:181095" // > 17288_NC_003284 protein_id:17551488; Caenorhabditis elegans chromosome X, complete sequence. /gene="XJ36"; intron(phase:100,position:13,45,102); exon(number:4,size:12,32,57,24,sum:125); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(8408099..8408173,8408228..8408398, 8408727..8408821,8408873..8408909)) /gene="XJ36" /locus_tag="XJ36" /codon_start=1 /product="putative protein (XJ36)" /protein_id="17551488" /db_xref="GI:17551488" /db_xref="AceView/WormGenes:XJ36" /db_xref="LocusID:184191" // > 17338_NC_003284 protein_id:17570173; Caenorhabditis elegans chromosome X, complete sequence. /gene="unc-27"; intron(phase:000201,position:38,65,115,205,253,296); exon(number:7,size:37,27,50,90,48,43,11,sum:306); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(8778513..8778623,8779843..8779923,8779976..8780125, 8780177..8780448,8780529..8780670,8780726..8780855, 8780903..8780937) /gene="unc-27" /locus_tag="XJ409" /codon_start=1 /evidence=experimental /product="UNCoordinated locomotion UNC-27, troponin I (unc-27)" /protein_id="17570173" /db_xref="GI:17570173" /db_xref="AceView/WormGenes:unc-27" /db_xref="LocusID:181124" // > 17355_NC_003284 protein_id:17550200; Caenorhabditis elegans chromosome X, complete sequence. /gene="XJ495"; intron(phase:00,position:23,40); exon(number:3,size:22,17,52,sum:91); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(8870170..8870235,8870284..8870334,8870768..8870926) /gene="XJ495" /locus_tag="XJ495" /codon_start=1 /product="predicted CDS, putative protein (XJ495)" /protein_id="17550200" /db_xref="GI:17550200" /db_xref="AceView/WormGenes:XJ495" /db_xref="LocusID:182320" // > 17366_NC_003284 protein_id:17550590; Caenorhabditis elegans chromosome X, complete sequence. /gene="XJ613"; intron(phase:0011212,position:39,67,132,177,223,286,343); exon(number:8,size:38,28,65,45,46,63,57,139,sum:481); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(8982925..8983038,8983116..8983199,8983247..8983442, 8983487..8983621,8984524..8984662,8984718..8984905, 8985005..8985176,8985817..8986234) /gene="XJ613" /locus_tag="XJ613" /codon_start=1 /evidence=experimental /product="l-carnitine dehydratase/bile acid-inducible protein F (XJ613)" /protein_id="17550590" /db_xref="GI:17550590" /db_xref="AceView/WormGenes:XJ613" /db_xref="LocusID:181140" // > 17389_NC_003284 protein_id:17549996; Caenorhabditis elegans chromosome X, complete sequence. /gene="XJ787"; intron(phase:0,position:48); exon(number:2,size:47,140,sum:187); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(9162078..9162218,9162298..9162720) /gene="XJ787" /locus_tag="XJ787" /codon_start=1 /product="putative protein, with a coiled coil-4 domain (XJ787)" /protein_id="17549996" /db_xref="GI:17549996" /db_xref="AceView/WormGenes:XJ787" /db_xref="LocusID:182038" // > 17403_NC_003284 protein_id:17567127; Caenorhabditis elegans chromosome X, complete sequence. /gene="XJ880"; intron(phase:00,position:64,112); exon(number:3,size:63,48,21,sum:132); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(9253067..9253132,9253767..9253910, 9254650..9254838)) /gene="XJ880" /locus_tag="XJ880" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil-4 domain (15.2 kD) (XJ880)" /protein_id="17567127" /db_xref="GI:17567127" /db_xref="AceView/WormGenes:XJ880" /db_xref="LocusID:184656" // > 17413_NC_003284 protein_id:17569875; Caenorhabditis elegans chromosome X, complete sequence. /gene="apt-4"; intron(phase:1002020,position:45,93,201,466,597,790,901); exon(number:8,size:44,48,108,265,131,193,111,25,sum:925); {splice:gtag,gtag,gtag,ggcg,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(9329192..9329324,9329403..9329545,9329753..9330076, 9330252..9331048,9331098..9331488,9331781..9332361, 9332429..9332759,9332872..9332949) /gene="apt-4" /locus_tag="XJ961" /codon_start=1 /evidence=experimental /product="AdaPTin or adaptin-related protein (apt-4)" /protein_id="17569875" /db_xref="GI:17569875" /db_xref="AceView/WormGenes:apt-4" /db_xref="LocusID:181163" // > 17418_NC_003284 protein_id:17550568; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK11"; intron(phase:000002,position:32,48,70,90,115,134); exon(number:7,size:31,16,22,20,25,19,10,sum:143); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(9382646..9382738,9383047..9383094,9383369..9383434, 9383516..9383575,9383656..9383730,9384586..9384644, 9385186..9385216) /gene="XK11" /locus_tag="XK11" /codon_start=1 /product="predicted CDS, putative protein (XK11)" /protein_id="17550568" /db_xref="GI:17550568" /db_xref="AceView/WormGenes:XK11" /db_xref="LocusID:182811" // > 17433_NC_003284 protein_id:17550230; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK134"; intron(phase:000,position:22,43,80); exon(number:4,size:21,21,37,37,sum:116); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(9507023..9507136,9507193..9507303, 9507346..9507408,9507544..9507606)) /gene="XK134" /locus_tag="XK134" /codon_start=1 /product="putative protein (XK134)" /protein_id="17550230" /db_xref="GI:17550230" /db_xref="AceView/WormGenes:XK134" /db_xref="LocusID:182359" // > 17441_NC_003284 protein_id:17567933; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK192"; intron(phase:2001,position:28,75,164,196); exon(number:5,size:27,47,89,32,21,sum:216); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(9564560..9564624,9564675..9564771, 9564826..9565092,9565309..9565447,9566300..9566382)) /gene="XK192" /locus_tag="XK192" /codon_start=1 /product="globin, possibly N-myristoylated (XK192)" /protein_id="17567933" /db_xref="GI:17567933" /db_xref="AceView/WormGenes:XK192" /db_xref="LocusID:186039" // > 17470_NC_003284 protein_id:17567807; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK444"; intron(phase:220002212011,position:24,74,118,146,189,286,398,439,508,589,648,690); exon(number:13,size:23,50,44,28,43,97,112,41,69,81,59,42,29,sum:718); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(9814478..9814566,9814814..9814939, 9815517..9815694,9815932..9816172,9816219..9816426, 9816472..9816593,9816847..9817182,9817226..9817518, 9817999..9818127,9819102..9819185,9819235..9819364, 9819600..9819749,9821654..9821724)) /gene="XK444" /locus_tag="XK444" /codon_start=1 /evidence=experimental /product="RhoGAP domain containing protein (XK444)" /protein_id="17567807" /db_xref="GI:17567807" /db_xref="AceView/WormGenes:XK444" /db_xref="LocusID:181195" // > 17484_NC_003284 protein_id:17567247; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK516"; intron(phase:0000,position:32,114,176,198); exon(number:5,size:31,82,62,22,49,sum:246); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(9888281..9888430,9888610..9888675, 9888992..9889177,9889227..9889472,9889891..9889983)) /gene="XK516" /locus_tag="XK516" /codon_start=1 /evidence=experimental /product="zn-finger-like, PHD finger (27.8 kD) (XK516)" /protein_id="17567247" /db_xref="GI:17567247" /db_xref="AceView/WormGenes:XK516" /db_xref="LocusID:184793" // > 17488_NC_003284 protein_id:17550500; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK539"; intron(phase:010,position:43,100,213); exon(number:4,size:42,57,113,68,sum:280); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(9912071..9912196,9912244..9912415,9912690..9913027, 9913073..9913279) /gene="XK539" /locus_tag="XK539" /codon_start=1 /product="putative membrane protein (XK539)" /protein_id="17550500" /db_xref="GI:17550500" /db_xref="AceView/WormGenes:XK539" /db_xref="LocusID:182741" // > 17489_NC_003284 protein_id:17550502; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK542"; intron(phase:0102022,position:51,124,242,318,394,439,471); exon(number:8,size:50,73,118,76,76,45,32,60,sum:530); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(9913456..9913636,9913679..9913774, 9913819..9913955,9914021..9914246,9914351..9914580, 9914632..9914984,9915170..9915389,9915452..9915601)) /gene="XK542" /locus_tag="XK542" /codon_start=1 /evidence=experimental /product="UDP-glucoronosyl/UDP-glucosyl transferase family member (XK542)" /protein_id="17550502" /db_xref="GI:17550502" /db_xref="AceView/WormGenes:XK542" /db_xref="LocusID:181205" // > 17503_NC_003284 protein_id:17567687; Caenorhabditis elegans chromosome X, complete sequence. /gene="mkk-4"; intron(phase:200000022,position:42,96,137,177,237,260,282,310,332); exon(number:10,size:41,54,41,40,60,23,22,28,22,32,sum:363); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(10018374..10018498,10018552..10018711, 10018756..10018878,10018992..10019111,10019158..10019337, 10019590..10019658,10019703..10019768,10019819..10019904, 10019959..10020024,10020074..10020170) /gene="mkk-4" /locus_tag="XK651" /codon_start=1 /evidence=experimental /product="MKK MAPK kinase homolog (mkk-4)" /protein_id="17567687" /db_xref="GI:17567687" /db_xref="AceView/WormGenes:mkk-4" /db_xref="LocusID:185682" // > 17504_NC_003284 protein_id:17570207; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK653"; intron(phase:200000022,position:40,94,133,173,233,256,278,306,328); exon(number:10,size:39,54,39,40,60,23,22,28,22,32,sum:359); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(10021665..10021783,10021877..10022036, 10022084..10022200,10022364..10022483,10022536..10022715, 10022760..10022828,10022880..10022945,10022994..10023079, 10023125..10023190,10023410..10023506) /gene="XK653" /locus_tag="XK653" /codon_start=1 /product="kinase (XK653)" /protein_id="17570207" /db_xref="GI:17570207" /db_xref="AceView/WormGenes:XK653" /db_xref="LocusID:189074" // > 17508_NC_003284 protein_id:17570591; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK676"; intron(phase:102,position:24,69,104); exon(number:4,size:23,45,35,19,sum:122); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10048324..10048381,10048484..10048590, 10048676..10048809,10048862..10048931)) /gene="XK676" /locus_tag="XK676" /codon_start=1 /evidence=experimental /product="putative mitochondrial protein (XK676)" /protein_id="17570591" /db_xref="GI:17570591" /db_xref="AceView/WormGenes:XK676" /db_xref="LocusID:181216" // > 17520_NC_003284 protein_id:17551522; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK758"; intron(phase:12102,position:82,196,379,627,655); exon(number:6,size:81,114,183,248,28,56,sum:710); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10129984..10130152,10130199..10130284, 10130331..10131073,10131288..10131835,10131886..10132228, 10132273..10132516)) /gene="XK758" /locus_tag="XK758" /codon_start=1 /evidence=experimental /product="acyltransferase 3 family (80.6 kD) (XK758)" /protein_id="17551522" /db_xref="GI:17551522" /db_xref="AceView/WormGenes:XK758" /db_xref="LocusID:181226" // > 17524_NC_003284 protein_id:17550216; Caenorhabditis elegans chromosome X, complete sequence. /gene="XK787"; intron(phase:2001,position:54,80,120,142); exon(number:5,size:53,26,40,22,129,sum:270); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(10159418..10159578,10159906..10159981, 10160060..10160179,10160226..10160292,10161448..10161836) /gene="XK787" /locus_tag="XK787" /codon_start=1 /product="predicted CDS, cytotoxic granule-associated RNA binding protein 1 like (XK787)" /protein_id="17550216" /db_xref="GI:17550216" /db_xref="AceView/WormGenes:XK787" /db_xref="LocusID:182350" // > 17593_NC_003284 protein_id:25147457; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL288"; intron(phase:012011000111100101,position:22,65,111,150,176,231,275,332,411,457,478,520,539,578,617,648,681,706); exon(number:19,size:21,43,46,39,26,55,44,57,79,46,21,42,19,39,39,31,33,25,24,sum:729); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10658788..10658861,10658909..10658984, 10659219..10659316,10659360..10659453,10659710..10659826, 10659874..10659989,10660033..10660089,10660366..10660491, 10660756..10660818,10660869..10661007,10661572..10661808, 10661850..10662020,10662089..10662219,10662268..10662432, 10662479..10662557,10662725..10662839,10662994..10663132, 10663622..10663751,10664661..10664723)) /gene="XL288" /locus_tag="XL288" /codon_start=1 /evidence=experimental /product="adenylate kinase (80.6 kD) (XL288)" /protein_id="25147457" /db_xref="GI:25147457" /db_xref="AceView/WormGenes:XL288" /db_xref="LocusID:181264" // > 17600_NC_003284 protein_id:25153569; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL332"; intron(phase:0,position:46); exon(number:2,size:45,47,sum:92); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10706902..10707045,10707479..10707613)) /gene="XL332" /locus_tag="XL332" /codon_start=1 /product="predicted CDS, putative nuclear protein (XL332)" /protein_id="25153569" /db_xref="GI:25153569" /db_xref="AceView/WormGenes:XL332" /db_xref="LocusID:266948" // > 17606_NC_003284 protein_id:17569277; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL375"; intron(phase:011111,position:30,53,142,168,229,253); exon(number:7,size:29,23,89,26,61,24,43,sum:295); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(10745423..10745509,10745562..10745631, 10745680..10745946,10746605..10746682,10746730..10746912, 10748420..10748491,10748543..10748673) /gene="XL375" /locus_tag="XL375" /codon_start=1 /evidence=experimental /product="putative protein (XL375)" /protein_id="17569277" /db_xref="GI:17569277" /db_xref="AceView/WormGenes:XL375" /db_xref="LocusID:181270" // > 17609_NC_003284 protein_id:17569623; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL407"; intron(phase:10010110,position:50,77,99,131,168,242,294,385); exon(number:9,size:49,27,22,32,37,74,52,91,22,sum:406); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(10778054..10778201,10778254..10778333, 10778379..10778444,10778489..10778585,10778632..10778741, 10778785..10779007,10779049..10779204,10779259..10779530, 10779989..10780057) /gene="XL407" /locus_tag="XL407" /codon_start=1 /evidence=experimental /product="esophageal gland cell secretory protein 11 like family member (48.9 kD) (XL407)" /protein_id="17569623" /db_xref="GI:17569623" /db_xref="AceView/WormGenes:XL407" /db_xref="LocusID:181272" // > 17616_NC_003284 protein_id:17550142; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL446"; intron(phase:102112212,position:25,42,76,97,138,172,229,280,311); exon(number:10,size:24,17,34,21,41,34,57,51,31,78,sum:388); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10817856..10818090,10818607..10818700, 10819025..10819176,10819308..10819478,10820334..10820436, 10821143..10821265,10821321..10821382,10822706..10822809, 10824025..10824074,10824481..10824553)) /gene="XL446" /locus_tag="XL446" /codon_start=1 /product="predicted CDS, ankyrin (XL446)" /protein_id="17550142" /db_xref="GI:17550142" /db_xref="AceView/WormGenes:XL446" /db_xref="LocusID:182244" // > 17618_NC_003284 protein_id:17550138; Caenorhabditis elegans chromosome X, complete sequence. /gene="pgp-5"; intron(phase:102200001000000,position:109,146,190,289,347,385,589,619,652,742,863,898,941,1096,1164); exon(number:16,size:108,37,44,99,58,38,204,30,33,90,121,35,43,155,68,120,sum:1283); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gcag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10844887..10845249,10845306..10845509, 10845556..10846020,10846066..10846194,10846245..10846349, 10846396..10846758,10846804..10847072,10847119..10847218, 10847267..10847356,10847404..10848015,10848258..10848371, 10848418..10848589,10848631..10848927,10848973..10849106, 10849153..10849262,10849358..10849682)) /gene="pgp-5" /locus_tag="XL474" /codon_start=1 /evidence=experimental /product="P-GlycoProtein related (pgp-5)" /protein_id="17550138" /db_xref="GI:17550138" /db_xref="AceView/WormGenes:pgp-5" /db_xref="LocusID:181276" // > 17631_NC_003284 protein_id:32566435; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL524"; intron(phase:01021,position:67,98,135,161,187); exon(number:6,size:66,31,37,26,26,51,sum:237); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(10895893..10896047,10896098..10896174, 10896226..10896305,10896360..10896469,10896591..10896684, 10896889..10897086)) /gene="XL524" /locus_tag="XL524" /codon_start=1 /evidence=experimental /product="putative endoplasmic reticulum protein, with at least 3 transmembrane domains (XL524)" /protein_id="32566435" /db_xref="GI:32566435" /db_xref="AceView/WormGenes:XL524" /db_xref="LocusID:181282" // > 17658_NC_003284 protein_id:17570239; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL681"; intron(phase:00010,position:186,260,302,432,520); exon(number:6,size:185,74,42,130,88,46,sum:565); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11052761..11053315,11053364..11053585, 11053633..11053758,11053805..11054195,11054245..11054507, 11054565..11054705) /gene="XL681" /locus_tag="XL681" /codon_start=1 /evidence=experimental /product="putative protein family member (60.5 kD) (XL681)" /protein_id="17570239" /db_xref="GI:17570239" /db_xref="AceView/WormGenes:XL681" /db_xref="LocusID:181297" // > 17666_NC_003284 protein_id:25153319; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL723"; intron(phase:20,position:53,107); exon(number:3,size:52,54,36,sum:142); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11099170..11099327,11099409..11099568, 11099618..11099728) /gene="XL723" /locus_tag="XL723" /codon_start=1 /evidence=experimental /product="putative protein, with at least 2 transmembrane domains (XL723)" /protein_id="25153319" /db_xref="GI:25153319" /db_xref="AceView/WormGenes:XL723" /db_xref="LocusID:259725" // > 17685_NC_003284 protein_id:17550824; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL838"; intron(phase:11111001120,position:121,242,627,655,724,758,838,939,986,1036,1130); exon(number:12,size:120,121,385,28,69,34,80,101,47,50,94,52,sum:1181); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(11208983..11209141,11209221..11209500, 11209557..11209707,11209752..11209892,11209943..11210246, 11210293..11210532,11210579..11210679,11210739..11210945, 11210996..11211079,11211125..11212279,11212331..11212693, 11212793..11213153)) /gene="XL838" /locus_tag="XL838" /codon_start=1 /evidence=experimental /product="ubiquitin carboxyl-terminal hydrolase like (XL838)" /protein_id="17550824" /db_xref="GI:17550824" /db_xref="AceView/WormGenes:XL838" /db_xref="LocusID:181312" // > 17687_NC_003284 protein_id:25152309; Caenorhabditis elegans chromosome X, complete sequence. /gene="XL877"; intron(phase:000000,position:58,78,133,176,212,261); exon(number:7,size:57,20,55,43,36,49,67,sum:327); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11248026..11248196,11248448..11248507, 11248567..11248731,11248791..11248919,11249005..11249112, 11249169..11249315,11250284..11250487) /gene="XL877" /locus_tag="XL877" /codon_start=1 /evidence=experimental /product="putative protein, with at least 4 transmembrane domains (XL877)" /protein_id="25152309" /db_xref="GI:25152309" /db_xref="AceView/WormGenes:XL877" /db_xref="LocusID:181314" // > 17713_NC_003284 protein_id:17567673; Caenorhabditis elegans chromosome X, complete sequence. /gene="tni-1"; intron(phase:00120,position:21,63,105,153,203); exon(number:6,size:20,42,42,48,50,48,sum:250); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(11366668..11366814,11367144..11367291, 11367375..11367519,11367566..11367692,11367737..11367862, 11367909..11367968)) /gene="tni-1" /locus_tag="XL994" /codon_start=1 /evidence=experimental /product="troponin I (28.9 kD) (tni-1)" /protein_id="17567673" /db_xref="GI:17567673" /db_xref="AceView/WormGenes:tni-1" /db_xref="LocusID:181329" // > 17727_NC_003284 protein_id:17567379; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM128"; intron(phase:00000012,position:16,71,130,161,207,253,278,320); exon(number:9,size:15,55,59,31,46,46,25,42,50,sum:369); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(11499966..11500116,11500164..11500290, 11500352..11500427,11500475..11500612,11500689..11500826, 11500869..11500961,11501322..11501498,11501556..11501720, 11501804..11501848)) /gene="XM128" /locus_tag="XM128" /codon_start=1 /product="putative protein, with 3 coiled coil-4 domains, of bilaterial origin (XM128)" /protein_id="17567379" /db_xref="GI:17567379" /db_xref="AceView/WormGenes:XM128" /db_xref="LocusID:185121" // > 17734_NC_003284 protein_id:17569065; Caenorhabditis elegans chromosome X, complete sequence. /gene="mig-2"; intron(phase:210,position:40,118,172); exon(number:4,size:39,78,54,24,sum:195); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11539112..11539230,11539306..11539538, 11540058..11540218,11540614..11540688) /gene="mig-2" /locus_tag="XM167" /codon_start=1 /evidence=experimental /product="abnormal cell MIGration MIG-2, ras-related C3 botulinum toxin substrate 1 Rac1 (mig-2)" /protein_id="17569065" /db_xref="GI:17569065" /db_xref="AceView/WormGenes:mig-2" /db_xref="LocusID:181344" // > 17764_NC_003284 protein_id:17551304; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM347"; intron(phase:11,position:119,156); exon(number:3,size:118,37,57,sum:212); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11718655..11719009,11719064..11719174, 11719245..11719417) /gene="XM347" /locus_tag="XM347" /codon_start=1 /product="putative mitochondrial protein family member (XM347)" /protein_id="17551304" /db_xref="GI:17551304" /db_xref="AceView/WormGenes:XM347" /db_xref="LocusID:183912" // > 17779_NC_003284 protein_id:17570131; Caenorhabditis elegans chromosome X, complete sequence. /gene="xtr-1"; intron(phase:20,position:89,165); exon(number:3,size:88,76,172,sum:336); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11841272..11841537,11841975..11842200, 11843449..11843967) /gene="xtr-1" /locus_tag="XM471" /codon_start=1 /product="predicted CDS, tra-2 Related on X, MX region of TRA-2 Related (xtr-1)" /protein_id="17570131" /db_xref="GI:17570131" /db_xref="AceView/WormGenes:xtr-1" /db_xref="LocusID:192057" // > 17806_NC_003284 protein_id:17551088; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM600"; intron(phase:011,position:22,54,257); exon(number:4,size:21,32,203,87,sum:343); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(11970757..11971019,11971069..11971677, 11971731..11971827,11972426..11972488)) /gene="XM600" /locus_tag="XM600" /codon_start=1 /product="nuclear receptor NHR-116 like family member (XM600)" /protein_id="17551088" /db_xref="GI:17551088" /db_xref="AceView/WormGenes:XM600" /db_xref="LocusID:183613" // > 17810_NC_003284 protein_id:25152365; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM615"; intron(phase:0,position:13); exon(number:2,size:12,76,sum:88); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(11985353..11985388,11986056..11986286) /gene="XM615" /locus_tag="XM615" /codon_start=1 /evidence=experimental /product="putative cytoplasmic protein (9.9 kD) (XM615)" /protein_id="25152365" /db_xref="GI:25152365" /db_xref="AceView/WormGenes:XM615" /db_xref="LocusID:183615" // > 17854_NC_003284 protein_id:17570283; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM917"; intron(phase:0,position:70); exon(number:2,size:69,70,sum:139); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(12289195..12289401,12289592..12289804) /gene="XM917" /locus_tag="XM917" /codon_start=1 /product="putative nuclear protein (XM917)" /protein_id="17570283" /db_xref="GI:17570283" /db_xref="AceView/WormGenes:XM917" /db_xref="LocusID:189243" // > 17856_NC_003284 protein_id:17570285; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM920"; intron(phase:120021,position:33,77,119,168,237,321); exon(number:7,size:32,44,42,49,69,84,45,sum:365); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(12292094..12292230,12292299..12292549, 12292606..12292814,12292861..12293007,12293052..12293175, 12293221..12293353,12293701..12293797)) /gene="XM920" /locus_tag="XM920" /codon_start=1 /product="predicted CDS, dot1l Histone Methyltransferase family member (XM920)" /protein_id="17570285" /db_xref="GI:17570285" /db_xref="AceView/WormGenes:XM920" /db_xref="LocusID:189244" // > 17861_NC_003284 protein_id:17567091; Caenorhabditis elegans chromosome X, complete sequence. /gene="XM941"; intron(phase:1,position:167); exon(number:2,size:166,85,sum:251); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(12312170..12312668,12313026..12313282) /gene="XM941" /locus_tag="XM941" /codon_start=1 /evidence=experimental /product="putative nuclear protein, with a coiled coil-4 domain (XM941)" /protein_id="17567091" /db_xref="GI:17567091" /db_xref="AceView/WormGenes:XM941" /db_xref="LocusID:181390" // > 17869_NC_003284 protein_id:17570629; Caenorhabditis elegans chromosome X, complete sequence. /gene="zig-2"; intron(phase:01,position:24,135); exon(number:3,size:23,111,104,sum:238); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(12331073..12331386,12331436..12331769, 12331819..12331887)) /gene="zig-2" /locus_tag="XM956" /codon_start=1 /evidence=experimental /product="2 (Zwei) IG-domain protein (26.3 kD) (zig-2)" /protein_id="17570629" /db_xref="GI:17570629" /db_xref="AceView/WormGenes:zig-2" /db_xref="LocusID:192087" // > 17892_NC_003284 protein_id:17569845; Caenorhabditis elegans chromosome X, complete sequence. /gene="XN84"; intron(phase:2112010,position:34,72,142,193,255,290,326); exon(number:8,size:33,38,70,51,62,35,36,57,sum:382); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(12455273..12455446,12455491..12455597, 12455909..12456014,12456096..12456279,12456550..12456703, 12456751..12456960,12457028..12457140,12457579..12457679)) /gene="XN84" /locus_tag="XN84" /codon_start=1 /product="zinc transporter ZnT-8 family member (XN84)" /protein_id="17569845" /db_xref="GI:17569845" /db_xref="AceView/WormGenes:XN84" /db_xref="LocusID:188574" // > 17900_NC_003284 protein_id:17550482; Caenorhabditis elegans chromosome X, complete sequence. /gene="XN144"; intron(phase:1,position:42); exon(number:2,size:41,132,sum:173); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(12515889..12516286,12516601..12516724)) /gene="XN144" /locus_tag="XN144" /codon_start=1 /product="predicted CDS, putative protein (XN144)" /protein_id="17550482" /db_xref="GI:17550482" /db_xref="AceView/WormGenes:XN144" /db_xref="LocusID:182683" // > 17911_NC_003284 protein_id:17568511; Caenorhabditis elegans chromosome X, complete sequence. /gene="XN269"; intron(phase:111110,position:8,46,107,152,203,247); exon(number:7,size:7,38,61,45,51,44,200,sum:446); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(12639444..12639465,12639511..12639624, 12639681..12639863,12640344..12640478,12640523..12640675, 12640716..12640846,12641387..12641989) /gene="XN269" /locus_tag="XN269" /codon_start=1 /product="matrix (XN269)" /protein_id="17568511" /db_xref="GI:17568511" /db_xref="AceView/WormGenes:XN269" /db_xref="LocusID:186805" // > 17958_NC_003284 protein_id:17568655; Caenorhabditis elegans chromosome X, complete sequence. /gene="XN673"; intron(phase:111121110001102,position:33,116,162,185,256,359,494,580,739,766,805,841,877,904,938); exon(number:16,size:32,83,46,23,71,103,135,86,159,27,39,36,36,27,34,32,sum:969); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(13042565..13042661,13042966..13043214, 13043320..13043457,13043553..13043621,13043677..13043890, 13043938..13044245,13044297..13044701,13044843..13045100, 13045145..13045620,13046806..13046886,13046955..13047071, 13047129..13047237,13047283..13047390,13047445..13047524, 13048420..13048523,13048580..13048676) /gene="XN673" /locus_tag="XN673" /codon_start=1 /evidence=experimental /product="metridin-like ShK toxin family member (XN673)" /protein_id="17568655" /db_xref="GI:17568655" /db_xref="AceView/WormGenes:XN673" /db_xref="LocusID:181434" // > 17988_NC_003284 protein_id:17568759; Caenorhabditis elegans chromosome X, complete sequence. /gene="XN866"; intron(phase:0010,position:21,69,90,113); exon(number:5,size:20,48,21,23,30,sum:142); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13237766..13237858,13238240..13238307, 13238372..13238435,13238678..13238821,13238870..13238929)) /gene="XN866" /locus_tag="XN866" /codon_start=1 /product="predicted CDS, putative cytoplasmic protein (XN866)" /protein_id="17568759" /db_xref="GI:17568759" /db_xref="AceView/WormGenes:XN866" /db_xref="LocusID:187177" // > 17994_NC_003284 protein_id:17568781; Caenorhabditis elegans chromosome X, complete sequence. /gene="XN892"; intron(phase:00011111022,position:21,58,166,199,242,274,310,423,461,494,516); exon(number:12,size:20,37,108,33,43,32,36,113,38,33,22,34,sum:549); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13265837..13265939,13266429..13266494, 13266707..13266807,13266905..13267017,13267291..13267629, 13267696..13267803,13268099..13268194,13268288..13268416, 13268626..13268725,13268769..13269092,13269262..13269372, 13269420..13269479)) /gene="XN892" /locus_tag="XN892" /codon_start=1 /product="chromodomain helicase DNA binding protein 4 like (XN892)" /protein_id="17568781" /db_xref="GI:17568781" /db_xref="AceView/WormGenes:XN892" /db_xref="LocusID:187186" // > 18015_NC_003284 protein_id:17551416; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO8"; intron(phase:101211,position:24,61,101,123,164,243); exon(number:7,size:23,37,40,22,41,79,68,sum:310); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13382453..13382658,13382971..13383207, 13383272..13383393,13383444..13383510,13383570..13383690, 13384446..13384555,13385506..13385575)) /gene="XO8" /locus_tag="XO8" /codon_start=1 /product="epidermal growth-factor receptor , L domain containing protein precursor family member (XO8)" /protein_id="17551416" /db_xref="GI:17551416" /db_xref="AceView/WormGenes:XO8" /db_xref="LocusID:184077" // > 18016_NC_003284 protein_id:17551414; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO15"; intron(phase:2,position:30); exon(number:2,size:29,9,sum:38); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(13387972..13388060,13388105..13388132) /gene="XO15" /locus_tag="XO15" /codon_start=1 /evidence=experimental /product="putative protein (XO15)" /protein_id="17551414" /db_xref="GI:17551414" /db_xref="AceView/WormGenes:XO15" /db_xref="LocusID:181460" // > 18027_NC_003284 protein_id:17551434; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO65"; intron(phase:2,position:336); exon(number:2,size:335,71,sum:406); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(13437225..13438231,13438521..13438734) /gene="XO65" /locus_tag="XO65" /codon_start=1 /product="predicted CDS, huntingtin interacting protein B HYPB like (XO65)" /protein_id="17551434" /db_xref="GI:17551434" /db_xref="AceView/WormGenes:XO65" /db_xref="LocusID:184086" // > 18030_NC_003284 protein_id:17551430; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO76"; intron(phase:010000022000,position:26,40,96,115,128,146,166,227,254,295,306,327); exon(number:13,size:25,14,56,19,13,18,20,61,27,41,11,21,43,sum:369); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13447538..13447669,13448008..13448070, 13448274..13448306,13448352..13448472,13448720..13448800, 13448963..13449147,13449204..13449263,13449613..13449666, 13449783..13449821,13449895..13449951,13450014..13450180, 13450262..13450304,13450358..13450432)) /gene="XO76" /locus_tag="XO76" /codon_start=1 /product="predicted CDS, putative nuclear protein (XO76)" /protein_id="17551430" /db_xref="GI:17551430" /db_xref="AceView/WormGenes:XO76" /db_xref="LocusID:184084" // > 18034_NC_003284 protein_id:17567005; Caenorhabditis elegans chromosome X, complete sequence. /gene="col-184"; intron(phase:0,position:51); exon(number:2,size:50,241,sum:291); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(13459959..13460108,13460155..13460880) /gene="col-184" /locus_tag="XO89" /codon_start=1 /evidence=experimental /product="COLlagen structural gene (col-184)" /protein_id="17567005" /db_xref="GI:17567005" /db_xref="AceView/WormGenes:col-184" /db_xref="LocusID:181470" // > 18048_NC_003284 protein_id:32566183; Caenorhabditis elegans chromosome X, complete sequence. /gene="odr-1"; intron(phase:21010010120001222000,position:23,146,173,205,263,287,328,379,410,434,462,559,583,641,705,761,808,850,873,922); exon(number:21,size:22,123,27,32,58,24,41,51,31,24,28,97,24,58,64,56,47,42,23,49,95,sum:1016); {splice:gtag,taac,atag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,tggc,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13535789..13536076,13536122..13536268, 13536317..13536385,13536432..13536555,13537056..13537196, 13537245..13537412,13537464..13537656,13537893..13538067, 13538119..13538190,13538243..13538533,13538588..13538669, 13538862..13538934,13538978..13539071,13539370..13539521, 13539619..13539742,13540000..13540071,13540119..13540291, 13540359..13540455,13540499..13540578,13540623..13540990, 13541159..13541226)) /gene="odr-1" /locus_tag="XO162" /codon_start=1 /evidence=experimental /product="ODoRant response abnormal ODR-1, guanylyl cyclase (115.7 kD) (odr-1)" /protein_id="32566183" /db_xref="GI:32566183" /db_xref="AceView/WormGenes:odr-1" /db_xref="LocusID:181479" // > 18052_NC_003284 protein_id:17568127; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO195"; intron(phase:102101220,position:22,57,90,131,163,242,319,430,569); exon(number:10,size:21,35,33,41,32,79,77,111,139,30,sum:598); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(13569315..13569378,13569437..13569540, 13569591..13569691,13569740..13569861,13570187..13570281, 13570373..13570610,13570658..13570889,13571120..13571452, 13571502..13571916,13572138..13572230) /gene="XO195" /locus_tag="XO195" /codon_start=1 /evidence=experimental /product="putative secreted or extracellular protein family member precursor (XO195)" /protein_id="17568127" /db_xref="GI:17568127" /db_xref="AceView/WormGenes:XO195" /db_xref="LocusID:186218" // > 18058_NC_003284 protein_id:17568115; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO214"; intron(phase:2020,position:30,70,122,139); exon(number:5,size:29,40,52,17,63,sum:201); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13585071..13585262,13585640..13585688, 13585823..13585980,13586030..13586147,13586481..13586569)) /gene="XO214" /locus_tag="XO214" /codon_start=1 /evidence=experimental /product="finger protein, possibly N-myristoylated (XO214)" /protein_id="17568115" /db_xref="GI:17568115" /db_xref="AceView/WormGenes:XO214" /db_xref="LocusID:186213" // > 18069_NC_003284 protein_id:17550924; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO269"; intron(phase:00,position:15,30); exon(number:3,size:14,15,42,sum:71); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(13641750..13641791,13641840..13641884, 13642111..13642239) /gene="XO269" /locus_tag="XO269" /codon_start=1 /product="predicted CDS, putative protein, with a coiled coil-4 domain (XO269)" /protein_id="17550924" /db_xref="GI:17550924" /db_xref="AceView/WormGenes:XO269" /db_xref="LocusID:183359" // > 18083_NC_003284 protein_id:17568201; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO384"; intron(phase:011000,position:14,47,94,186,229,265); exon(number:7,size:13,33,47,92,43,36,53,sum:317); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13756566..13756727,13757076..13757183, 13757231..13757359,13757405..13757679,13758287..13758427, 13758990..13759089,13760978..13761016)) /gene="XO384" /locus_tag="XO384" /codon_start=1 /evidence=experimental /product="nervous system antigen like (35.7 kD) (XO384)" /protein_id="17568201" /db_xref="GI:17568201" /db_xref="AceView/WormGenes:XO384" /db_xref="LocusID:181494" // > 18097_NC_003284 protein_id:17569927; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO516"; intron(phase:02020,position:53,104,147,209,277); exon(number:6,size:52,51,43,62,68,99,sum:375); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(13891568..13891867,13891971..13892172, 13892218..13892405,13893384..13893510,13893557..13893711, 13893777..13893932)) /gene="XO516" /locus_tag="XO516" /codon_start=1 /product="putative protein family member, with at least 5 transmembrane domains (XO516)" /protein_id="17569927" /db_xref="GI:17569927" /db_xref="AceView/WormGenes:XO516" /db_xref="LocusID:188708" // > 18125_NC_003284 protein_id:25152533; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO700"; intron(phase:000022222222220,position:33,115,277,304,346,360,382,406,420,444,467,491,519,547,579); exon(number:16,size:32,82,162,27,42,14,22,24,14,24,23,24,28,28,32,46,sum:624); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(14071171..14071311,14071359..14071452, 14071507..14071590,14071792..14071875,14072068..14072139, 14072183..14072251,14072463..14072534,14072584..14072625, 14072719..14072790,14072896..14072961,14073007..14073048, 14073099..14073226,14073274..14073354,14073539..14074024, 14074163..14074408,14074723..14074818)) /gene="XO700" /locus_tag="XO700" /codon_start=1 /evidence=experimental /product="putative protein, with a coiled coil-4 domain (72.9 kD) (XO700)" /protein_id="25152533" /db_xref="GI:25152533" /db_xref="AceView/WormGenes:XO700" /db_xref="LocusID:181518" // > 18131_NC_003284 protein_id:17567049; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO727"; intron(phase:1000,position:93,151,172,256); exon(number:5,size:92,58,21,84,62,sum:317); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(14099048..14099324,14099367..14099539, 14099590..14099652,14099726..14099977,14100029..14100217) /gene="XO727" /locus_tag="XO727" /codon_start=1 /product="kinase 1 family member (XO727)" /protein_id="17567049" /db_xref="GI:17567049" /db_xref="AceView/WormGenes:XO727" /db_xref="LocusID:184566" // > 18133_NC_003284 protein_id:17567375; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO733"; intron(phase:2,position:25); exon(number:2,size:24,51,sum:75); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(14106614..14106687,14107101..14107254) /gene="XO733" /locus_tag="XO733" /codon_start=1 /product="predicted CDS, putative protein (XO733)" /protein_id="17567375" /db_xref="GI:17567375" /db_xref="AceView/WormGenes:XO733" /db_xref="LocusID:185087" // > 18144_NC_003284 protein_id:17550886; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO799"; intron(phase:0000221,position:43,79,127,163,213,235,285); exon(number:8,size:42,36,48,36,50,22,50,11,sum:295); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(14169491..14169616,14169671..14169778, 14170951..14171094,14171146..14171253,14171620..14171771, 14171818..14171883,14171968..14172116,14172174..14172208) /gene="XO799" /locus_tag="XO799" /codon_start=1 /product="predicted CDS, androgen induced protein like (XO799)" /protein_id="17550886" /db_xref="GI:17550886" /db_xref="AceView/WormGenes:XO799" /db_xref="LocusID:183293" // > 18147_NC_003284 protein_id:17568725; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO837"; intron(phase:10210022102,position:14,72,103,135,200,243,268,306,377,431,461); exon(number:12,size:13,58,31,32,65,43,25,38,71,54,30,47,sum:507); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(14205477..14205516,14205868..14206040, 14206091..14206185,14206229..14206323,14206958..14207151, 14207676..14207804,14207853..14207929,14207974..14208087, 14208352..14208563,14208888..14209048,14209096..14209187, 14209345..14209486) /gene="XO837" /locus_tag="XO837" /codon_start=1 /evidence=experimental /product="extracellular CUB domain containing protein precursor (54.7 kD) (XO837)" /protein_id="17568725" /db_xref="GI:17568725" /db_xref="AceView/WormGenes:XO837" /db_xref="LocusID:181531" // > 18148_NC_003284 protein_id:17568729; Caenorhabditis elegans chromosome X, complete sequence. /gene="XO838"; intron(phase:0000000000000,position:23,69,92,109,132,155,180,204,237,261,281,303,321); exon(number:14,size:22,46,23,17,23,23,25,24,33,24,20,22,18,24,sum:344); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(14210071..14210145,14210812..14210865, 14211034..14211099,14211205..14211264,14211392..14211463, 14211547..14211645,14211763..14211834,14212054..14212128, 14212401..14212469,14212681..14212749,14212817..14212867, 14213093..14213161,14213339..14213476,14213694..14213759)) /gene="XO838" /locus_tag="XO838" /codon_start=1 /product="predicted CDS, putative nuclear protein (XO838)" /protein_id="17568729" /db_xref="GI:17568729" /db_xref="AceView/WormGenes:XO838" /db_xref="LocusID:187069" // > 18180_NC_003284 protein_id:17567313; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP63"; intron(phase:2,position:39); exon(number:2,size:38,184,sum:222); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(14435504..14435619,14436074..14436626) /gene="XP63" /locus_tag="XP63" /codon_start=1 /product="cyclin-like F-box (XP63)" /protein_id="17567313" /db_xref="GI:17567313" /db_xref="AceView/WormGenes:XP63" /db_xref="LocusID:184897" // > 18189_NC_003284 protein_id:17551294; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP132"; intron(phase:00,position:50,81); exon(number:3,size:49,31,68,sum:148); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(14504694..14504900,14505286..14505378, 14505427..14505573)) /gene="XP132" /locus_tag="XP132" /codon_start=1 /evidence=experimental /product="glycine cleavage system H protein (16.5 kD) (XP132)" /protein_id="17551294" /db_xref="GI:17551294" /db_xref="AceView/WormGenes:XP132" /db_xref="LocusID:183902" // > 18211_NC_003284 protein_id:17568135; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP260"; intron(phase:10120011,position:34,62,87,124,204,261,293,350); exon(number:9,size:33,28,25,37,80,57,32,57,36,sum:385); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(14631893..14632002,14632295..14632465, 14633182..14633278,14633335..14633505,14633560..14633797, 14633848..14633959,14634461..14634536,14634590..14634672, 14634807..14634906)) /gene="XP260" /locus_tag="XP260" /codon_start=1 /product="metridin-like ShK toxin family member (XP260)" /protein_id="17568135" /db_xref="GI:17568135" /db_xref="AceView/WormGenes:XP260" /db_xref="LocusID:186247" // > 18221_NC_003284 protein_id:17567431; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP341"; intron(phase:1120,position:65,168,193,406); exon(number:5,size:64,103,25,213,22,sum:427); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(14711898..14712090,14712412..14712720, 14712874..14712949,14712993..14713629,14713869..14713937) /gene="XP341" /locus_tag="XP341" /codon_start=1 /product="predicted CDS, putative protein (XP341)" /protein_id="17567431" /db_xref="GI:17567431" /db_xref="AceView/WormGenes:XP341" /db_xref="LocusID:185222" // > 18256_NC_003284 protein_id:17567711; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP580"; intron(phase:002,position:22,69,211); exon(number:4,size:21,47,142,31,sum:241); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(14951146..14951239,14951283..14951710, 14951764..14951904,14951953..14952015)) /gene="XP580" /locus_tag="XP580" /codon_start=1 /evidence=experimental /product="putative protein (XP580)" /protein_id="17567711" /db_xref="GI:17567711" /db_xref="AceView/WormGenes:XP580" /db_xref="LocusID:181589" // > 18308_NC_003284 protein_id:17570331; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP934"; intron(phase:0222,position:23,66,144,208); exon(number:5,size:22,43,78,64,10,sum:217); {splice:gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(15305484..15305514,15305565..15305756, 15305884..15306117,15306749..15306879,15307653..15307718)) /gene="XP934" /locus_tag="XP934" /codon_start=1 /product="putative nuclear protein (XP934)" /protein_id="17570331" /db_xref="GI:17570331" /db_xref="AceView/WormGenes:XP934" /db_xref="LocusID:189438" // > 18311_NC_003284 protein_id:25153333; Caenorhabditis elegans chromosome X, complete sequence. /gene="XP963"; intron(phase:1,position:39); exon(number:2,size:38,45,sum:83); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(15333695..15333809,15333912..15334048) /gene="XP963" /locus_tag="XP963" /codon_start=1 /evidence=experimental /product="putative protein (9.6 kD) (XP963)" /protein_id="25153333" /db_xref="GI:25153333" /db_xref="AceView/WormGenes:XP963" /db_xref="LocusID:181624" // > 18338_NC_003284 protein_id:17568767; Caenorhabditis elegans chromosome X, complete sequence. /gene="XQ221"; intron(phase:02110,position:60,115,147,318,347); exon(number:6,size:59,55,32,171,29,104,sum:450); {splice:gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(15591574..15591750,15592065..15592231, 15592638..15592732,15592819..15593331,15593381..15593466, 15593511..15593825) /gene="XQ221" /locus_tag="XQ221" /codon_start=1 /evidence=experimental /product="delayed-early response protein/equilibrative nucleoside transporter family member (50.5 kD) (XQ221)" /protein_id="17568767" /db_xref="GI:17568767" /db_xref="AceView/WormGenes:XQ221" /db_xref="LocusID:181648" // > 18346_NC_003284 protein_id:17568299; Caenorhabditis elegans chromosome X, complete sequence. /gene="XQ264"; intron(phase:102221,position:40,112,158,202,252,306); exon(number:7,size:39,72,46,44,50,54,51,sum:356); {splice:gcag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(15638764..15638918,15639077..15639237, 15639879..15640028,15640076..15640207,15640257..15640396, 15640445..15640659,15641603..15641720)) /gene="XQ264" /locus_tag="XQ264" /codon_start=1 /product="putative protein family member (XQ264)" /protein_id="17568299" /db_xref="GI:17568299" /db_xref="AceView/WormGenes:XQ264" /db_xref="LocusID:186618" // > 18395_NC_003284 protein_id:17570097; Caenorhabditis elegans chromosome X, complete sequence. /gene="XQ675"; intron(phase:1,position:151); exon(number:2,size:150,32,sum:182); {splice:gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(16048763..16049213,16049271..16049368) /gene="XQ675" /locus_tag="XQ675" /codon_start=1 /product="aminopeptidase 2 (XQ675)" /protein_id="17570097" /db_xref="GI:17570097" /db_xref="AceView/WormGenes:XQ675" /db_xref="LocusID:188968" // > 18397_NC_003284 protein_id:17570099; Caenorhabditis elegans chromosome X, complete sequence. /gene="XQ678"; intron(phase:11,position:19,39); exon(number:3,size:18,20,59,sum:97); {splice:gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(16053147..16053325,16053379..16053438, 16053487..16053541)) /gene="XQ678" /locus_tag="XQ678" /codon_start=1 /product="predicted CDS, putative protein (XQ678)" /protein_id="17570099" /db_xref="GI:17570099" /db_xref="AceView/WormGenes:XQ678" /db_xref="LocusID:188969" // > 18402_NC_003284 protein_id:17570763; Caenorhabditis elegans chromosome X, complete sequence. /gene="XQ738"; intron(phase:100020,position:46,125,154,180,223,268); exon(number:7,size:45,79,29,26,43,45,58,sum:325); {splice:gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(16110478..16110654,16111505..16111637, 16111684..16111814,16112165..16112242,16113354..16113440, 16113642..16113877,16114757..16114892)) /gene="XQ738" /locus_tag="XQ738" /codon_start=1 /evidence=experimental /product="misexpression suppressor of KSR (35.6 kD) (XQ738)" /protein_id="17570763" /db_xref="GI:17570763" /db_xref="AceView/WormGenes:XQ738" /db_xref="LocusID:181689" // > 18433_NC_003284 protein_id:17567519; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR73"; intron(phase:1200020,position:24,69,98,112,142,198,263); exon(number:8,size:23,45,29,14,30,56,65,307,sum:569); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(16457449..16457518,16457778..16457913, 16457987..16458071,16458208..16458249,16458417..16458506, 16459052..16459221,16459268..16459460,16459513..16460436) /gene="XR87" /locus_tag="XR87" /codon_start=1 /evidence=experimental /product="putative protein of eukaryotic origin (65.4 kD) (XR87)" /protein_id="17567519" /db_xref="GI:17567519" /db_xref="AceView/WormGenes:XR87" /db_xref="LocusID:181712" // > 18457_NC_003284 protein_id:17550310; Caenorhabditis elegans chromosome X, complete sequence. /gene="hda-7"; intron(phase:22110000,position:85,220,269,305,520,577,725,756); exon(number:9,size:84,135,49,36,215,57,148,31,41,sum:796); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(16726524..16726777,16726866..16727270, 16727317..16727462,16727515..16727622,16727803..16728446, 16728490..16728660,16728705..16729148,16729564..16729656, 16730372..16730497) /gene="hda-7" /locus_tag="XR357" /codon_start=1 /evidence=experimental /product="histone deacetylase (hda-7)" /protein_id="17550310" /db_xref="GI:17550310" /db_xref="AceView/WormGenes:hda-7" /db_xref="LocusID:181723" // > 18487_NC_003284 protein_id:17550706; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR527"; intron(phase:102,position:17,47,99); exon(number:4,size:16,30,52,136,sum:234); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(16901918..16901966,16902085..16902173, 16902234..16902391,16902469..16902877) /gene="XR527" /locus_tag="XR527" /codon_start=1 /product="putative protein family member, with at least 3 transmembrane domains (XR527)" /protein_id="17550706" /db_xref="GI:17550706" /db_xref="AceView/WormGenes:XR527" /db_xref="LocusID:183049" // > 18495_NC_003284 protein_id:17568023; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR585"; intron(phase:1111010101020,position:36,81,157,228,284,308,439,519,573,692,781,1060,1151); exon(number:14,size:35,45,76,71,56,24,131,80,54,119,89,279,91,22,sum:1172); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(16950221..16950326,16951270..16951404, 16952090..16952317,16952566..16952778,16954029..16954195, 16954320..16954392,16954580..16954971,16955194..16955434, 16955498..16955658,16955993..16956350,16956405..16956670, 16956891..16957729,16958096..16958366,16958477..16958545) /gene="XR585" /locus_tag="XR585" /codon_start=1 /evidence=experimental /product="HLA-B associated (128.0 kD) (XR585)" /protein_id="17568023" /db_xref="GI:17568023" /db_xref="AceView/WormGenes:XR585" /db_xref="LocusID:181741" // > 18496_NC_003284 protein_id:17568029; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR588"; intron(phase:11111210,position:31,49,104,117,220,241,307,371); exon(number:9,size:30,18,55,13,103,21,66,64,45,sum:415); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(16959396..16959533,16959582..16959772, 16960168..16960364,16960457..16960520,16960866..16961174, 16961222..16961260,16961311..16961475,16961535..16961588, 16962117..16962207)) /gene="XR588" /locus_tag="XR588" /codon_start=1 /evidence=experimental /product="metridin-like ShK toxin family member (XR588)" /protein_id="17568029" /db_xref="GI:17568029" /db_xref="AceView/WormGenes:XR588" /db_xref="LocusID:181742" // > 18514_NC_003284 protein_id:17550258; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR714"; intron(phase:120,position:100,188,248); exon(number:4,size:99,88,60,84,sum:331); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(17085451..17085705,17085755..17085932, 17085984..17086248,17086519..17086816)) /gene="XR714" /locus_tag="XR714" /codon_start=1 /evidence=experimental /product="putative mitochondrial protein family member (XR714)" /protein_id="17550258" /db_xref="GI:17550258" /db_xref="AceView/WormGenes:XR714" /db_xref="LocusID:181750" // > 18535_NC_003284 protein_id:17570077; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR840"; intron(phase:212100220020102220,position:23,46,69,115,240,269,304,364,396,424,490,543,591,616,653,681,708,729); exon(number:19,size:22,23,23,46,125,29,35,60,32,28,66,53,48,25,37,28,27,21,43,sum:771); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS complement(join(17211311..17211442,17211486..17211546, 17211595..17211675,17211917..17212000,17212046..17212158, 17212208..17212281,17212325..17212469,17212609..17212765, 17212984..17213183,17213232..17213315,17213364..17213457, 17213506..17213685,17214117..17214223,17214276..17214362, 17214407..17214780,17214842..17214978,17215095..17215164, 17215945..17216012,17216057..17216124)) /gene="XR840" /locus_tag="XR840" /codon_start=1 /evidence=experimental /product="von Willebrand factor, type A (XR840)" /protein_id="17570077" /db_xref="GI:17570077" /db_xref="AceView/WormGenes:XR840" /db_xref="LocusID:181760" // > 18546_NC_003284 protein_id:17550774; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR889"; intron(phase:11101111112211,position:10,52,107,177,193,230,352,375,394,433,453,506,520,539); exon(number:15,size:9,42,55,70,16,37,122,23,19,39,20,53,14,19,50,sum:588); {splice:gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(17259009..17259036,17259081..17259206, 17259276..17259440,17259588..17259796,17260524..17260572, 17260618..17260728,17260996..17261361,17262534..17262602, 17262646..17262702,17262852..17262968,17263057..17263117, 17263407..17263565,17263666..17263706,17263915..17263971, 17265456..17265607) /gene="XR889" /locus_tag="XR889" /codon_start=1 /product="predicted CDS, putative nuclear protein, with a coiled coil-4 domain (XR889)" /protein_id="17550774" /db_xref="GI:17550774" /db_xref="AceView/WormGenes:XR889" /db_xref="LocusID:183162" // > 18549_NC_003284 protein_id:17550772; Caenorhabditis elegans chromosome X, complete sequence. /gene="XR913"; intron(phase:220,position:12,38,248); exon(number:4,size:11,26,210,58,sum:305); {splice:gtag,gtag,gtag} LOCUS NC_003284 17705013 bp DNA linear INV 12-JUL-2003 DEFINITION Caenorhabditis elegans chromosome X, complete sequence. ACCESSION NC_003284 VERSION NC_003284.3 GI:32566600 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17705013) AUTHORS . CONSRTM The C. elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (bases 1 to 17705013) AUTHORS The NCBI REFSEQ group. TITLE Direct Submission JOURNAL Submitted (02-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from WormBase genome release WS97. The annotations are based on data from the C.elegans Genome Sequencing Consortium, the Worm Transcriptome Project, the Worm ORFeome project and other publicly available sources The genomic sequence, imported from Wormbase release WS97 (Mars 7 2003), has been produced by the C.elegans Genome Sequencing Consortium, led by John Sulston and Bob Waterston. Their coding sequences were predicted by integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST project of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) the C.elegans ORFeome cloning project led by Marc Vidal (http://worfdb.dfci.harvard.edu/), as well as similarity to other proteins using BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs were predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964.). The mitochondria was sequenced by David Wolstenholme (Genbank X54252). NCBI annotations consisted in replacing, whenever possible, the predicted CDS by the complete mRNAs available in Genbank and in enhancing the analysis of all proteins, predicted or confirmed by the Kohara Worm Transcriptome Project. The analysis uses BLASTP, TaxBlast, PFAM (Bateman et al., Nucleic Acids Res 2002 Jan 1 ;30 (1):276-80), PSORT2 (Nakai, K. and Kanehisa, M., Genomics 14, 897-911, 1992 ; Nakai, K., Advances in protein chemistry 54, 277-344, 2000) and Expasy (pI and molecular weight). COG were provided for 2841 predicted CDS by Tatusov et al. (Nucleic Acids Res 29, 22-28, 2001). More information about those genes is available from LocusLink, AceView/WormGenes and Wormbase. FEATURES Location/Qualifiers source 1..17705013 /organism="Caenorhabditis elegans" /mol_type="genomic DNA" /db_xref="taxon:6239" /chromosome="X" _HEADER_END_ CDS join(17288827..17288861,17288929..17289006, 17289053..17289680,17289728..17289904) /gene="XR913" /locus_tag="XR913" /codon_start=1 /product="cyclin-like F-box and Protein of unknown function DUF38 family member (XR913)" /protein_id="17550772" /db_xref="GI:17550772" /db_xref="AceView/WormGenes:XR913" /db_xref="LocusID:183161" //