# Last edited on 2008-06-15 06:22:09 by stolfi # NCBI translation tables in vertical format (see NCBI-TranslationTables.1) ~~~ ncbi-1.tbl # Last edited on DATE TIME by USER # The Standard Code # AAs = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = ---M---------------M---------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF AS # # --- -- # AAA K- # AAT N- # AAC N- # AAG K- # ATA I- # ATT I- # ATC I- # ATG MM # Normal ACA T- # ACT T- # ACC T- # ACG T- # AGA R- # AGT S- # AGC S- # AGG R- # TAA *- # TAT Y- # TAC Y- # TAG *- # TTA L- # TTT F- # TTC F- # TTG LM # Also allowed by NCBI TCA S- # TCT S- # TCC S- # TCG S- # TGA *- # TGT C- # TGC C- # TGG W- # CAA Q- # CAT H- # CAC H- # CAG Q- # CTA L- # CTT L- # CTC L- # CTG LM # Also allowed by NCBI CCA P- # CCT P- # CCC P- # CCG P- # CGA R- # CGT R- # CGC R- # CGG R- # GAA E- # GAT D- # GAC D- # GAG E- # GTA V- # GTT V- # GTC V- # GTG V- # Rare [11,12,13,14,15,16] GCA A- # GCT A- # GCC A- # GCG A- # GGA G- # GGT G- # GGC G- # GGG G- # # [11] Candida albicans ribosomal P prot.; Abramczyk et al. # [12] Mammalian NAT1; Takahashi et al. 2005 # [13] Peabody 1989 # [14] Prats et al. 1989 # [15] Hann et al. 1992 # [6] Sugihara et al. 1990. ~~~ ncbi-2.tbl # Last edited on DATE TIME by USER # The Vertebrate Mitochondrial Code (transl_table=2) # AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG # Starts = --------------------------------MMMM---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA MM- # Alternate: Bos,Homo,Mus ATT IM- # Alternate: Homo,Mus ATC IM- # Alternate: Mus ATG MM- # Normal ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA *-- # AGT S-- # AGC S-- # AGG *-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # Coturnix, Gallus (Desjardins and Morais, 1991) GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # Note: the transcripts of several vertebrate mitochondrial genes end in U # or UA, which become termination codons (UAA) upon subsequent # polyadenylation. ~~~ ncbi-3.tbl # Last edited on DATE TIME by USER # The Yeast Mitochondrial Code (transl_table=3) # AAs = FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = ----------------------------------MM---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA MM- # Common only in gene "var1"; uncertain in Hansenula saturnus (Met or Ile) ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA T-- # Uncertain in Kluyveromyces thermotolerans CTT T-- # Uncertain in Hansenula saturnus, Kluyveromyces thermotolerans [31] CTC T-- # Uncertain in Kluyveromyces thermotolerans CTG T-- # Uncertain in Kluyveromyces thermotolerans CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # Very rare GCT A-- # GCC A-- # Very rare GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [31] Clark-Walker and Weiller, 1994 ~~~ ncbi-4.tbl # Last edited on DATE TIME by USER # The Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code (transl_table=4) # AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = --MM---------------M------------MMMM---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA IM- # Leishmania, Tertrahymena, Paramecium ATT IM- # Leishmania, Tertrahymena, Paramecium ATC IM- # Paramecium ATG MM- # Tertrahymena, Paramecium ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA LM- # Trypanosoma TTT F-- # TTC F-- # TTG LM- # Trypanosoma TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG LM- # Trypanosoma CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # Paramecium(?) [41] GTT V-- # GTC V-- # GTG VM- # Paramecium GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # [41] Pritchard et al., 1990 ~~~ ncbi-5.tbl # Last edited on DATE TIME by USER # The Invertebrate Mitochondrial Code (transl_table=5) # AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG # Starts = ---M----------------------------MMMM---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # Absent in Drosophila ATA MM- # Alternate ATT IM- # Alternate. Not in Mytilus [56] ATC IM- # Apis [51] ATG MM- # Normal ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA S-- # AGT S-- # AGC S-- # AGG S-- # Sometimes lysine or arginine [53] TAA *-- # "ATAA" may be start of cytochrome oxidase subunit I [57] TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG LM- # Ascaris, Caenorhabditis TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # Polyplacophora [52]. Possibly start in Drosophila [54,55] GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [51] Crozier and Crozier, 1993 # [52] Boore and Brown, 1994 GenBank Accession Number: U09810 # [53] Abascal et al., 2006 # [54] Clary and Wolstenholme, 1985 # [55] Gadaleta et al., 1988 # [56] Hoffmann et al., 1992 # [57] Fox, 1987 ~~~ ncbi-6.tbl # Last edited on DATE TIME by USER # The Ciliate, Dasycladacean and Hexamita Nuclear Code (transl_table=6) # AAs = FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA Q-- # Gln only in the Oxytrichidae. TAT Y-- # TAC Y-- # TAG Q-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # ~~~ ncbi-7.tbl # Last edited on DATE TIME by USER # DELETED ~~~ ncbi-8.tbl # Last edited on DATE TIME by USER # DELETED ~~~ ncbi-9.tbl # Last edited on DATE TIME by USER # The Echinoderm and Flatworm Mitochondrial Code (transl_table=9) # AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA N-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA S-- # AGT S-- # AGC S-- # AGG S-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # ~~~ ncbi-10.tbl # Last edited on DATE TIME by USER # The Euplotid Nuclear Code (transl_table=10) # AAs = FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA C-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # ~~~ ncbi-11.tbl # Last edited on DATE TIME by USER # The Bacterial and Plant Plastid Code (transl_table=11) # AAs = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = ---M---------------M------------MMMM---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA IM- # ATT IM- # Rarely, in Bacteria [114]. ATC IM- # ATG MM- # Normal. ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG LM- # E. coli, about 3% proteins [112] TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # Rarely Trp in Bacillus subtilis, E. coli [115] TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG LM- # plasmid protein RepA in Escherichia coli [113] CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # Archaea and Bacteria [111] GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [111] Kozak 1983, Fotheringham et al. 1986, # Golderer et al. 1995, Nolling et al. 1995, # Sazuka & Ohara 1996, Genser et al. 1998, # Wang et al. 2003 # [112] Blattner et al. 1997 # [113] Spiers and Bergquist, 1992 # [114] Polard et al. 1991, Liveris et al. 1993, # Sazuka & Ohara 1996, Binns & Masters 2002 # [115] Hatfiled and Diamond, 1993 Back to top ~~~ ncbi-12.tbl # Last edited on DATE TIME by USER # The Alternative Yeast Nuclear Code (transl_table=12) # AAs = FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = -------------------M---------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # May be start in Candida albicans [121] CTA L-- # CTT L-- # CTC L-- # CTG SM- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [121] Santos et al., 1993 ~~~ ncbi-13.tbl # Last edited on DATE TIME by USER # The Ascidian Mitochondrial Code (transl_table=13) # AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG # Starts = ---M------------------------------MM---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA MM- # Alternative [135] ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA G-- # [131,132,133,134] AGT S-- # AGC S-- # AGG G-- # [131,132,133,134] TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG LM- # Alternative [135] TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # Alternative [135] GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [131] Durrheim et al. 1993 # [122] Kondow et al. 1999, Yokobori et al., 1993, Yokobori et al. 1999 # [133] Yokobori et al. 2003 # [134] Kondow et al. 1999, Yokobori et al. 1999 # [135] Yokobori et al. 1999 ~~~ ncbi-14.tbl # Last edited on DATE TIME by USER # The Alternative Flatworm Mitochondrial Code (transl_table=14) # AAs = FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA N-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA S-- # AGT S-- # AGC S-- # AGG S-- # TAA Y-- # Disputed. TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # ~~~ ncbi-15.tbl # Last edited on DATE TIME by USER # Blepharisma Nuclear Code (transl_table=15) # AAs = FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG Q-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [151] Liang and Heckman, 1993 ~~~ ncbi-16.tbl # Last edited on DATE TIME by USER # Chlorophycean Mitochondrial Code (transl_table=16) # AAs = FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG L-- # Chlorophycean, Spizellomyces punctatus [161] TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # # [160] Hayashi-Ishimaru et al. 1996 # [161] Laforest et al. 1997 ~~~ ncbi-21.tbl # Last edited on DATE TIME by USER # Trematode Mitochondrial Code (transl_table=21) # AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA N-- # AAT N-- # AAC N-- # AAG K-- # ATA M-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA S-- # AGT S-- # AGC S-- # AGG S-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA W-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # ~~~ ncbi-22.tbl # Last edited on DATE TIME by USER # Scenedesmus obliquus mitochondrial Code (transl_table=22) # AAs = FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = -----------------------------------M---------------------------- # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT I-- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG L-- # TTA L-- # TTT F-- # TTC F-- # TTG L-- # TCA *-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG V-- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- # ~~~ ncbi-23.tbl # Last edited on DATE TIME by USER # Thraustochytrium Mitochondrial Code (transl_table=23) # AAs = FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG # Starts = --------------------------------M--M---------------M------------ # Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG # Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG # Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG # DEF ASI # --- --- AAA K-- # AAT N-- # AAC N-- # AAG K-- # ATA I-- # ATT IM- # ATC I-- # ATG MM- # ACA T-- # ACT T-- # ACC T-- # ACG T-- # AGA R-- # AGT S-- # AGC S-- # AGG R-- # TAA *-- # TAT Y-- # TAC Y-- # TAG *-- # TTA *-- # TTT F-- # TTC F-- # TTG L-- # TCA S-- # TCT S-- # TCC S-- # TCG S-- # TGA *-- # TGT C-- # TGC C-- # TGG W-- # CAA Q-- # CAT H-- # CAC H-- # CAG Q-- # CTA L-- # CTT L-- # CTC L-- # CTG L-- # CCA P-- # CCT P-- # CCC P-- # CCG P-- # CGA R-- # CGT R-- # CGC R-- # CGG R-- # GAA E-- # GAT D-- # GAC D-- # GAG E-- # GTA V-- # GTT V-- # GTC V-- # GTG VM- # GCA A-- # GCT A-- # GCC A-- # GCG A-- # GGA G-- # GGT G-- # GGC G-- # GGG G-- #