# Last edited on 2008-06-15 06:52:04 by stolfi

PROJECT GOALS

  This project aims at building data sets for use in bioinformatics
  projects by J. Stolfi, Helena C. G. Leitão and collaborators, at
  IC-UNICAMP and IC-UFF, such as Bayesian detection of coding regions
  (Renatha Capua's diss.), mutual information through Fourier analysis
  (Luciana Pessôa's diss.), and so on.
  
  This project is not connected to IC-UNICAMP's extinct Laboratory for
  Bio-Informatics (LBI) nor current and past bioinformatics
  projects of other researchers at UNICAMP or UFF.

MAIN DIRECTORY STRUCTURE

  The main sub-directories are

    reese - Exon/intron dataset by Martin Reese
    saxon - Exon/intron database (EID) by Saxonov et. al.
    ncbir - Whole genome datasets from NCBI RefSeq
    synth - Synthetic datasets

    tools - general-purpose tools.
    docs  - miscellanelous documents and tables
    codes - translation code tables

  Other tools can be found at ${STOLFIHOME}/programs/c/DNA .
  
  This project used to be the directory ${STOLFIHOME}/programs/c/DATA .
 
MISC TOOLS

  Splitting bibligraphic entries: 
  
    gawk \
        ' // { \
            while(match($0, /[(][^()]*[0-9][\)]/)) \
              { $0 = gensub(/[(]([^()]*[0-9])[\)][. ]*/, "@@ \\1\n", "g", $0); }; \
              print; \
            } \
        ' \
    | gawk \
        ' BEGIN { n = 10; } \
          /[@][@]/ { \
            n++; \
            gsub(/[@][@]/, ("[" n "].\n# [" n "]"), $0); \
          } \
          // { print; } \
        '