# Last edited on 2013-10-14 18:25:33 by stolfilocal

PROG := dm_lav_to_cdv
PROGDIR := ../..

include ${STOLFIHOME}/programs/c/GENERIC-PROGS-TEST.make

DATA_DIR := ${STOLFIHOME}/programs/c/DNA/DATA

# Format: {SUBDIR}:{SEQA}:{SIZEA}:{SEQB}:{SIZEB}:{TOOL}:{MIN_RUNGS}:{MIN_GOOD_FRAC}

TESTS := \
  match:DSIM:807946:DYAK:1363842:LASTZ:512:0.80
  
MORE_TESTS := \
  match:EDH1:4630707:E933:5521804:LASTZ:512:0.90
  

all: 
	for tt in ${TESTS} ; do \
          ${MAKE} TEST=$$tt single ; \
        done

######################################################################
# For ${TEST}
ifneq "/${TEST}" "/"

TEST_ARGS := ${subst :, ,${TEST}}
SUBDIR      := ${word 1,${TEST_ARGS}}
SEQ_A       := ${word 2,${TEST_ARGS}}
SIZE_A      := ${word 3,${TEST_ARGS}}
SEQ_B       := ${word 4,${TEST_ARGS}}
SIZE_B      := ${word 5,${TEST_ARGS}}
TOOL        := ${word 6,${TEST_ARGS}}
MIN_RUNGS   := ${word 7,${TEST_ARGS}}
MIN_GOOD    := ${word 8,${TEST_ARGS}}

OUT_DIR := out

LAV_NAME := ${SEQ_A}_${SEQ_B}_${TOOL}

OUT_PREFIX := ${OUT_DIR}/${LAV_NAME}-${MIN_RUNGS}-${MIN_GOOD}

CDV_FILE := ${OUT_PREFIX}.cdv
LAV_FILE := ${DATA_DIR}/${SUBDIR}/lav/${LAV_NAME}.lav

single: single-clean ${OUT_PREFIX}.cdv

${CDV_FILE}: ${OUT_DIR} ${LAV_FILE} ${PROGDIR}/${PROG} ${LAV_FILE}
	${PROGDIR}/${PROG} \
          -seqA 101 ${SEQ_A} ${SIZE_A} \
          -seqB 102 ${SEQ_B} ${SIZE_B} \
          -minCandSize ${MIN_RUNGS} \
          -minGoodFrac ${MIN_GOOD} \
          -verbose \
          < ${LAV_FILE} \
          > ${CDV_FILE}

${OUT_DIR}:
	mkdir -p ${OUT_DIR} 

single-clean:: 
	-/bin/rm -fv ${OUT_PREFIX}*.cdv

endif
# end ${TEST}
######################################################################