#! /bin/sed -f # Last edited on 2004-02-02 20:23:37 by stolfi s/pz_symbol[.]ToInt\>/pz_symbol_to_int/g s/pz_symbol[.]MakeErrorVarTable\>/pz_symbol_make_error_var_table/g s/pz_symbol[.]MakeDecodeTable\>/pz_symbol_make_decode_table/g s/pz_symbol[.]IntgDistSqr\>/pz_symbol_intg_dist_sqr/g s/pz_symbol[.]FromInt\>/pz_symbol_from_int/g s/pz_symbol[.]ErrorVar\>/pz_symbol_error_var/g s/pz_symbol[.]Encode\>/pz_symbol_encode/g s/pz_symbol[.]DistSqr\>/pz_symbol_dist_sqr/g s/pz_symbol[.]Decode\>/pz_symbol_decode/g s/pz_symbol[.]Complement\>/pz_symbol_complement/g s/pz_symbol[.]Valid\>/pz_symbol_valid_chars/g s/pz_symbol[.]Table\>/double_vec/g s/pz_symbol[.]T\>/pz_symbol_t/g s/pz_symbol_chain[.]DoExtractSegment\>/pz_symbol_chain_do_extract_segment/g s/pz_symbol_chain[.]DoTrim\>/pz_symbol_chain_do_trim/g s/pz_symbol_chain[.]ExtractSegment\>/pz_symbol_chain_extract_segment/g s/pz_symbol_chain[.]FindBestMatch\>/pz_symbol_chain_find_best_match/g s/pz_symbol_chain[.]PrintSegment\>/pz_symbol_chain_print_segment/g s/pz_symbol_chain[.]ReadAll\>/pz_symbol_chain_read_all/g s/pz_symbol_chain[.]ReadOld\>/pz_symbol_chain_read_old/g s/pz_symbol_chain[.]Read\>/pz_symbol_chain_read/g s/pz_symbol_chain[.]RefineMatch\>/pz_symbol_chain_refine_match/g s/pz_symbol_chain[.]ReverseAndComplement\>/pz_symbol_chain_reverse_and_complement/g s/pz_symbol_chain[.]Trim\>/pz_symbol_chain_trim/g s/pz_symbol_chain[.]Write\>/pz_symbol_chain_write/g s/pz_symbol_chain[.]ReadData\>/pz_symbol_chain_read_data/g s/pz_symbol_chain[.]ReadAllData\>/pz_symbol_chain_read_all_data/g s/pz_symbol_chain[.]T\>/pz_symbol_chain_t/g s/pz_candidate[.]Empty\>/pz_candidate_empty/g s/pz_candidate[.]IsEmpty\>/pz_candidate_is_empty/g s/pz_candidate[.]Expand\>/pz_candidate_expand/g s/pz_candidate[.]TrimAndPack\>/pz_candidate_trim_and_pack/g s/pz_candidate[.]Read\>/pz_candidate_read/g s/pz_candidate[.]ReadData\>/pz_candidate_read_data/g s/pz_candidate[.]ReadOld\>/pz_candidate_read_old/g s/pz_candidate[.]ChainsUsed\>/pz_candidate_chains_used/g s/pz_candidate[.]Print\>/pz_candidate_print/g s/pz_candidate[.]PrintHalf\>/pz_candidate_print_half/g s/pz_candidate[.]Sort\>/pz_candidate_sort/g s/pz_candidate[.]IndexSort\>/pz_candidate_index_sort/g s/pz_candidate[.]LexicallyBetter\>/pz_candidate_lexically_better/g s/pz_candidate[.]PairMismatchBetter\>/pz_candidate_pair_mismatch_better/g s/pz_candidate[.]MismatchBetter\>/pz_candidate_mismatch_better/g s/pz_candidate[.]RemoveDuplicates\>/pz_candidate_remove_duplicates/g s/pz_candidate[.]RemoveShort\>/pz_candidate_remove_short/g s/pz_candidate[.]PruneCandsPerPair\>/pz_candidate_prune_cands_per_pair/g s/pz_candidate[.]PruneCandsPerChain\>/pz_candidate_prune_cands_per_chain/g s/pz_candidate[.]FindSimilarCands\>/pz_candidate_find_similar_cands/g s/pz_candidate[.]PrintCandidate\>/pz_candidate_print_candidate/g s/pz_candidate[.]PrintSimilarityStatistics\>/pz_candidate_print_similarity_statistics/g s/pz_candidate[.]CountOK\>/pz_candidate_count_ok/g s/pz_candidate[.]PrParm\>/pz_candidate_pr_parm/g s/pz_candidate[.]MergeOverlaps\>/pz_candidate_merge_overlaps/g s/pz_candidate[.]MergePairOverlaps\>/pz_candidate_merge_pair_overlaps/g s/pz_candidate[.]Overlap\>/pz_candidate_overlap/g s/pz_candidate[.]ReallocMatch\>/pz_candidate_realloc_match/g s/pz_candidate[.]PackedMatchOverlap\>/pz_candidate_packed_match_overlap/g s/pz_candidate[.]Join\>/pz_candidate_join/g s/pz_candidate[.]T\>/pz_candidate_t/g s/pz_window[.]Join\>/pz_window_join/g s/pz_window[.]Expand\>/pz_window_expand/g s/pz_window[.]Read\>/pz_window_read/g s/pz_window[.]T\>/pz_window_t/g